LOCUS       DAZAND010000001        45183 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.001, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000001 DAZAND010000000
VERSION     DAZAND010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 45183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 45183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..45183
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.001"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..645)
                     /locus_tag="ACHDOB_000001"
     CDS             complement(<1..645)
                     /locus_tag="ACHDOB_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3324970.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRTVFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRISMGDFYLYIFSFFLAIFGLISLFLNFLNLEKID
                     FVFIFIILPLLMIFLKKELHLQFVDNAYNDFRIVVIASFFTALFYAFYGLFFTYNEIL
                     NLELFSRKIIAYKSASFVYFDFLSEFLHFISNLKFFIFSYFGYLGFRVLNFIFDF"
     gene            complement(626..2569)
                     /gene="ligA"
                     /locus_tag="ACHDOB_000002"
     CDS             complement(626..2569)
                     /gene="ligA"
                     /locus_tag="ACHDOB_000002"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HFN3324971.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESEFRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGLGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCVNLDEVLKAYDELLALREKKPMMMDGMVV
                     RIDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWHKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRSRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LIKAKELEIKCIDESAFNELVKE"
     gene            complement(2570..3712)
                     /gene="folP"
                     /locus_tag="ACHDOB_000003"
     CDS             complement(2570..3712)
                     /gene="folP"
                     /locus_tag="ACHDOB_000003"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HFN3324972.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNVLLMASKEQIQKLIVKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYEAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASVIRVHDLYEHKQLFALAQAMDNIGV"
     gene            complement(3714..4313)
                     /locus_tag="ACHDOB_000004"
     CDS             complement(3714..4313)
                     /locus_tag="ACHDOB_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HFN3324973.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFMPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            complement(4319..4855)
                     /locus_tag="ACHDOB_000005"
     CDS             complement(4319..4855)
                     /locus_tag="ACHDOB_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HFN3324974.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKAARPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSAFDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSRVQLG"
     gene            complement(4856..6058)
                     /gene="lysC"
                     /locus_tag="ACHDOB_000006"
     CDS             complement(4856..6058)
                     /gene="lysC"
                     /locus_tag="ACHDOB_000006"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HFN3324975.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGYPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNVEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            complement(6060..6530)
                     /gene="nudH"
                     /locus_tag="ACHDOB_000007"
     CDS             complement(6060..6530)
                     /gene="nudH"
                     /locus_tag="ACHDOB_000007"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HFN3324976.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEEKGYI"
     gene            6630..7697
                     /gene="hemW"
                     /locus_tag="ACHDOB_000008"
     CDS             6630..7697
                     /gene="hemW"
                     /locus_tag="ACHDOB_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HFN3324977.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFKALKEDIVFQLK
                     QFNIQSNQIKTLFIGGGTPSCVDAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVNRISFGAQSFHPKKLHFLGRIHNQEMIIKALENANKVGFKNINLDLIYDT
                     KLDNKKMLEFELLHLKQIKALITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQ
                     LLELDFFQYEISNFSKTKSQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKN
                     YIENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYK
                     NKRYFNPNFLISDELALYLSS"
     gene            7756..8163
                     /gene="tatB"
                     /locus_tag="ACHDOB_000009"
     CDS             7756..8163
                     /gene="tatB"
                     /locus_tag="ACHDOB_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008320 - protein transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HFN3324978.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDNTKNNLSGQNLNTEEKPNLSKLETQDKTEK"
     gene            8164..8901
                     /gene="tatC"
                     /locus_tag="ACHDOB_000010"
     CDS             8164..8901
                     /gene="tatC"
                     /locus_tag="ACHDOB_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HFN3324979.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAILVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            8894..9922
                     /gene="queA"
                     /locus_tag="ACHDOB_000011"
     CDS             8894..9922
                     /gene="queA"
                     /locus_tag="ACHDOB_000011"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HFN3324980.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKVSGGKIELFLHQPFLNSHNPLFLAQIK
                     GRVKKDEILYFKKDLKIRVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYARTKTKSG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(9911..10876)
                     /gene="lpxD"
                     /locus_tag="ACHDOB_000012"
     CDS             complement(9911..10876)
                     /gene="lpxD"
                     /locus_tag="ACHDOB_000012"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HFN3324981.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAIKFKEKSQD"
     gene            complement(10873..11337)
                     /gene="ilvN"
                     /locus_tag="ACHDOB_000013"
     CDS             complement(10873..11337)
                     /gene="ilvN"
                     /locus_tag="ACHDOB_000013"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HFN3324982.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(11334..13034)
                     /gene="ilvI"
                     /locus_tag="ACHDOB_000014"
     CDS             complement(11334..13034)
                     /gene="ilvI"
                     /locus_tag="ACHDOB_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HFN3324983.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHATDAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYPKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELVKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISNKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(13052..13495)
                     /locus_tag="ACHDOB_000015"
     CDS             complement(13052..13495)
                     /locus_tag="ACHDOB_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HFN3324984.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(13507..14526)
                     /gene="ribA"
                     /locus_tag="ACHDOB_000016"
     CDS             complement(13507..14526)
                     /gene="ribA"
                     /locus_tag="ACHDOB_000016"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HFN3324985.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            14619..14693
                     /locus_tag="ACHDOB_000017"
     tRNA            14619..14693
                     /locus_tag="ACHDOB_000017"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14651..14653,aa:Gln,seq:ttg)
     gene            14728..14803
                     /locus_tag="ACHDOB_000018"
     tRNA            14728..14803
                     /locus_tag="ACHDOB_000018"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14761..14763,aa:Met,seq:cat)
     gene            complement(14825..15697)
                     /locus_tag="ACHDOB_000019"
     CDS             complement(14825..15697)
                     /locus_tag="ACHDOB_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFN3324986.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALGKLSFKDIQNFATLSGIAKLYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLIFFYKEKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKFRTKNENFIPNEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNYQIIDEDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKTR
                     LENILKSYLNNLSK"
     gene            complement(15694..16761)
                     /locus_tag="ACHDOB_000020"
     CDS             complement(15694..16761)
                     /locus_tag="ACHDOB_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HP0729 family protein"
                     /protein_id="HFN3324987.1"
                     /translation="MNHLLILYNPYYQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEK
                     QNFLEEIYQSTNEENFLQLFLSDYANLFVAKVVKISKNVDESLIPSYYKEKNLEVEDF
                     FIISDLRELVREDFSLLRDKFLANFITPNDHTYAIYGNNYTYPLPVRLKEECSYFLGD
                     EKHYLSVYKSKEYLVMQENFIRFVFGKRIFYLLHPDSISNIIHAELELLQSENDLLND
                     FTSIVVKYSKTLEYEIYAFAKKVLLKACMKDPSLYDLAYNVQGKSFILKDFFTQKPNL
                     GSIKFLLRHENIQCHLGKSLTQFINYPFSKSLTLIQEIRNEAVHAKAPSLNEVKKLRN
                     EILGIEGVSLLKSILTHKEIS"
     gene            complement(16770..17075)
                     /locus_tag="ACHDOB_000021"
     CDS             complement(16770..17075)
                     /locus_tag="ACHDOB_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3324988.1"
                     /translation="MFSKIFSSLSLANAFKGFLFKRISSPMQSARIISMVLDIKNAFN
                     DSKDQASSICKTLDLIVNFKKEHPQDFNELFEILKDLIQEYEQNPNEIKQNLKEILK"
     gene            complement(17082..17546)
                     /locus_tag="ACHDOB_000022"
     CDS             complement(17082..17546)
                     /locus_tag="ACHDOB_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004316478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3324989.1"
                     /translation="MNFLSSLKDKAVNASEAIKDKTIKTAEVVKDIGMEVKCGIGWHA
                     GEYQNEKDKPKCFFSKICPDCGKYLTKNQHDFEAPEILNPDNCYGYRRCTLCSIQVFD
                     NFHNYYEIKKDSKCRMHEKCNLCGHERLGQTRHNWKYDESGQKICLDCKETV"
     gene            complement(17550..18332)
                     /locus_tag="ACHDOB_000023"
     CDS             complement(17550..18332)
                     /locus_tag="ACHDOB_000023"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3324990.1"
                     /translation="MLELITQKDQDFLQNIENLDEEYIQKFINKKISEIAIAIETAAE
                     NADKAKDRTQKAKNLNTDSDWQTYIPIFGRWLGETSEEKKEIKSNMILEVAELQNESM
                     NQMTTILKEVVIFFTSSFCIATRMNQALSLIIAQGFVKSDGKVIRLSKAAKEQFQQIQ
                     KFTLSFIEDHEKHKDTINNIQVELDKKNQIDDEQYKLIEKHYQEFIQYKNYNDKIVQE
                     QECKINELKDILNKRKNVFTNSISILALIVSVASIVLYFIGR"
     gene            complement(18332..20014)
                     /locus_tag="ACHDOB_000024"
     CDS             complement(18332..20014)
                     /locus_tag="ACHDOB_000024"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3324991.1"
                     /translation="MNNYIHLEELDLKANYADLEKELENLSKKECLRIEIDKGLENSL
                     KELEDLMEKLPEQQTQTLFEQCTKNAMDAVTGHFGLASTILNAKDGGNVTTLHNFEKG
                     IVATEEDLQKLTKYQQGYKRDSNYDKIKDNIRDNSPKIVRSEYTGEEMERGAGKNKAQ
                     LDHVISLKEIDRDPNMHLFLDDAIRAEIANHPDNLKWLDASANASKGDRDLMEWGKEI
                     DPKTGKTNFEKYGIDEKKAEKIYNTAKSNLKKKVIKEKIVKYSNEVLSTGAKDSMKIF
                     VYSAFGVVLKDFIEAVVIELKTTFREFGKENIKEIFKRFARRMEKVWEKIKAKWKDIF
                     KGSLEAGIQAFFSNLLVFIINTIFTTLKKIVQIIRAGFTSLYQAVKIIINPPKNIPKD
                     EIYFEASKIFVSGMISAISMLGSEMIHKFLLSIPGFNVFLSLPIPFTDETIGDALSLC
                     ISAAGGAVLSTIAIFYMDKWRSNSKIGNLQIQIVTQKNLIVQYKIAKTWFALNDAYHI
                     VKNETLATIQQIKKDNQIREQSSQEVETAIEEFENCNITKKLYKKLNQTKEN"
     gene            complement(20090..20296)
                     /locus_tag="ACHDOB_000025"
     CDS             complement(20090..20296)
                     /locus_tag="ACHDOB_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3324992.1"
                     /translation="MGIILGILSLIAGFVAIVLMCSLYFIVFMVFVGMAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            complement(20287..20889)
                     /locus_tag="ACHDOB_000026"
     CDS             complement(20287..20889)
                     /locus_tag="ACHDOB_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3324993.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGGIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDMINTEEYKLKRELEVEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFECLSAFLETQSEKNDLAVVKM
                     ISESMERKTQRFYLQTKFQTFPQYIFPSVWSSPMWNKQWE"
     gene            complement(20949..22325)
                     /gene="dnaB"
                     /locus_tag="ACHDOB_000027"
     CDS             complement(20949..22325)
                     /gene="dnaB"
                     /locus_tag="ACHDOB_000027"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HFN3324994.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELREKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKILRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            22479..23408
                     /locus_tag="ACHDOB_000028"
     CDS             22479..23408
                     /locus_tag="ACHDOB_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HFN3324995.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSYNADNSDSSFIPFIGVELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYATGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            complement(23456..24784)
                     /locus_tag="ACHDOB_000029"
     CDS             complement(23456..24784)
                     /locus_tag="ACHDOB_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HFN3324996.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMYLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMAKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDFIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAMGDAMQPALSYNYAKKDFSRIKAIIKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLFLSYFIGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
     gene            complement(24965..25900)
                     /locus_tag="ACHDOB_000030"
     CDS             complement(24965..25900)
                     /locus_tag="ACHDOB_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HFN3324997.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLANEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            25971..27203
                     /gene="proA"
                     /locus_tag="ACHDOB_000031"
     CDS             25971..27203
                     /gene="proA"
                     /locus_tag="ACHDOB_000031"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HFN3324998.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAHIEDPIGKISKGWKNYAGLNIQ
                     KISIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIRQDKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLEVFKADENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGV
                     EDICTYKYIISGEGQIRE"
     gene            27200..28285
                     /locus_tag="ACHDOB_000032"
     CDS             27200..28285
                     /locus_tag="ACHDOB_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HFN3324999.1"
                     /translation="MNKIEMLKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGLVAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYICFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELVLLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSKAANFMSENADTLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKRKA"
     gene            complement(28282..29079)
                     /locus_tag="ACHDOB_000033"
     CDS             complement(28282..29079)
                     /locus_tag="ACHDOB_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HFN3325000.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYGFDK
                     GVLVQPSFLGVDNEFLLQSIEKDENIKAIVVVDEGIKFDELKKLKERKACGVRLNLIG
                     KELPNFKTMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVKNLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYVNNEQAVKFAKKIYEILKEYFPLSNFV
                     FGSDWPHTNFEANVNFSSALAAFNEVVVSKKEQEQILGDNACALFDF"
     gene            complement(29090..30382)
                     /locus_tag="ACHDOB_000034"
     CDS             complement(29090..30382)
                     /locus_tag="ACHDOB_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HFN3325001.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFVNSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDSFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGVIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(30501..31505)
                     /locus_tag="ACHDOB_000035"
     CDS             complement(30501..31505)
                     /locus_tag="ACHDOB_000035"
                     /inference="COORDINATES: protein motif:HMM:NF022646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HFN3325002.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLALEINLLAKENDKAKIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLPKNDFVKFFKVYLPNLEAKEPVTLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNAIEHFDKAIAHIEDDYLGSHWLGSFALLAMDVDIL
                     "
     gene            complement(31515..32468)
                     /locus_tag="ACHDOB_000036"
     CDS             complement(31515..32468)
                     /locus_tag="ACHDOB_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HFN3325003.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(32455..33147)
                     /locus_tag="ACHDOB_000037"
     CDS             complement(32455..33147)
                     /locus_tag="ACHDOB_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HFN3325004.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(33306..33875)
                     /gene="efp"
                     /locus_tag="ACHDOB_000038"
     CDS             complement(33306..33875)
                     /gene="efp"
                     /locus_tag="ACHDOB_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HFN3325005.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            33989..34309
                     /gene="rnpB"
                     /locus_tag="ACHDOB_000039"
     ncRNA           33989..34309
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="ACHDOB_000039"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(34307..34582)
                     /locus_tag="ACHDOB_000040"
     CDS             complement(34307..34582)
                     /locus_tag="ACHDOB_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325006.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLTKESPSED
                     FLKENANDLFYQVQALLQEAVMLIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(34563..34949)
                     /gene="fliS"
                     /locus_tag="ACHDOB_000041"
     CDS             complement(34563..34949)
                     /gene="fliS"
                     /locus_tag="ACHDOB_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HFN3325007.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(34961..36889)
                     /gene="fliD"
                     /locus_tag="ACHDOB_000042"
     CDS             complement(34961..36889)
                     /gene="fliD"
                     /locus_tag="ACHDOB_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009421 - bacterial-type flagellum
                     filament cap [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HFN3325008.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSQGLANDGGFVNAKLNGTADLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDAQGQYKSDSEA
                     EKIFKSLGWELDTTSSIDPANDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNGL
                     EFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYNQNNVTGFRLNFSGDGSSDFSIKGDANILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLNTVTNMINAANNSNN"
     gene            complement(36892..37257)
                     /gene="flaG"
                     /locus_tag="ACHDOB_000043"
     CDS             complement(36892..37257)
                     /gene="flaG"
                     /locus_tag="ACHDOB_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlaG family protein"
                     /protein_id="HFN3325009.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(37413..39215)
                     /gene="ubiD"
                     /locus_tag="ACHDOB_000044"
     CDS             complement(37413..39215)
                     /gene="ubiD"
                     /locus_tag="ACHDOB_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HFN3325010.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPMLKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPVKLTPCENGIFVPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYILNRFDAEKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(39212..40135)
                     /gene="hemC"
                     /locus_tag="ACHDOB_000045"
     CDS             complement(39212..40135)
                     /gene="hemC"
                     /locus_tag="ACHDOB_000045"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HFN3325011.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLEIVSLRGNVNSRIEKLKNNKF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILKLLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(40132..40521)
                     /gene="fxsA"
                     /locus_tag="ACHDOB_000046"
     CDS             complement(40132..40521)
                     /gene="fxsA"
                     /locus_tag="ACHDOB_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family membrane protein"
                     /protein_id="HFN3325012.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLIFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(40518..42227)
                     /gene="proS"
                     /locus_tag="ACHDOB_000047"
     CDS             complement(40518..42227)
                     /gene="proS"
                     /locus_tag="ACHDOB_000047"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HFN3325013.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEIKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDVDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCAKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEANHDEKGCIWNKTLAPFVLEIIISNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVIGKGLENNEIEFIQREGLIKELIKTDELMEILKK
                     KVL"
     gene            complement(42211..43509)
                     /gene="hemA"
                     /locus_tag="ACHDOB_000048"
     CDS             complement(42211..43509)
                     /gene="hemA"
                     /locus_tag="ACHDOB_000048"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HFN3325014.1"
                     /translation="MYYCISFTHKNTDIALREKLSFFNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNP
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELPYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(43509..44402)
                     /locus_tag="ACHDOB_000049"
     CDS             complement(43509..44402)
                     /locus_tag="ACHDOB_000049"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HFN3325015.1"
                     /translation="MQKIDELIKQFLQELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKASKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(44416..44952)
                     /locus_tag="ACHDOB_000050"
     CDS             complement(44416..44952)
                     /locus_tag="ACHDOB_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HFN3325016.1"
                     /translation="MFKISPCLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(44955..>45183)
                     /locus_tag="ACHDOB_000051"
     CDS             complement(44955..>45183)
                     /locus_tag="ACHDOB_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HFN3325017.1"
                     /translation="KEKFIEIIQNGNLGALEKVFEEFFADHIAMVELLEKQGLTEMDV
                     KNFILENGDFIEERQNDIYIELGAKILGHEG"
BASE COUNT        15343 a         8167 c         5650 g        16023 t
ORIGIN      
        1 aaaatcaaaa ataaaattta aaaccctaaa tcccaaatat ccaaaataag aaaaaataaa
       61 aaattttaaa tttgaaataa aatgtaaaaa ttcagacaaa aaatcaaaat aaacaaaaga
      121 agcgctctta taagcaatga ttttcctaga aaaaagttct aaatttaaaa tttcattgta
      181 agtaaaaaaa agcccataaa atgcataaaa taaagcagta aaaaaactag cgataacaac
      241 tattctaaaa tcattataag cattatctac aaattgcaaa tgtaattctt tttttaaaaa
      301 tatcatcaat aaaggcaaaa ttataaatat aaaaacaaaa tcaatttttt caagatttaa
      361 aaaatttaaa aataaagaaa taagtccaaa aatcgccaag aaaaaactaa aaatataaag
      421 ataaaaatcc cccatactaa tacgataaaa caaacttccc ttaatcaaag tagcttcttt
      481 tataatattt tttctaagct ttaaaaataa aaagaattcc caaaaaagtg ttaaaaaaat
      541 aggaattaaa aaaaataaag aaaaaacagt cctttgccaa gttagtaaaa agccaaaaag
      601 gcttaaaagc gttaaaatat aagaactatt ctttaacaag ctcattaaaa gcactttcat
      661 ctatacattt tatttcaagc tctttagcct taatcagctt agaacctgcc tcttctccaa
      721 aaagcacata gtcagtcttt ttagaaactg agccacttac cttaccccca agcttttcta
      781 tcaaagcctt aaactcatct cttgagcgtg aaagagtacc tgtaattaca aaagttttac
      841 caaaaatcac accatcgctt ttgatttcaa gtttttctat tttcaaattt aaaagcttgt
      901 aaaactcatc aattcttgta cgattaacac gcgtaaattc gcaaagactt aaagccattt
      961 gctctccaaa accttctaaa ttggcataag cttcaaagct ttgcttgtgc cactctttac
     1021 caaaacttaa acttaatttt ttagccgcaa cctcgccaat atgctctatc cctaaagctg
     1081 tgataaaacg aaaaagctca cattctcttg cttgttctat agcatttaaa agattgttaa
     1141 ttttcttttc cttaaagcct tccaaacctt caaaatcact aaattttaaa tgaaaaatgc
     1201 tctcaagcgt agtgattttt ttgtgtttgt ataaaagctc tactatattt tctccaagcc
     1261 cgtcgatatt aagacatttt ttagaaacaa aatgaatgat agaatttaca agtctatcct
     1321 cacaatctat attttgacat tttattaaag ttccttcatc taaaagctca ctttggcaag
     1381 taggacaaag cttagggcgt gaaatttcca tctctaaacc ttctctacga tctttaaaaa
     1441 ccttagtgat tttagggata acatcgccac ttcttatcac gcttacaaaa tcattgattt
     1501 taacatcaag tcttgcaatc tcatcaaaat tatggagtgt ggctgatttt actacaaccc
     1561 catctaaatt tacaggttct aaaaccgcca caggagtgat cactccactt cttcccactt
     1621 gtaaatttac gcctattaaa cgcgtggttt tttcaagtgc aggaaattta aaagctgcca
     1681 taaattttgg aaattttacc gtatagccta attcttcaca aagtgcaaga tcatcaattc
     1741 ttaccaccat accatccatc atcataggct ttttttctct taaagctaaa agctcatcat
     1801 aagcttttaa aacctcgtct aaattaacac aaagtcttac aaaatcatct tttaaaaaac
     1861 cgagctctct gataaattgc atcacctcac tgtgtttagt aaaatttaag gtattttccc
     1921 ctagtcccca aggataaaat ttcaaattcc tttctttggt gatgcttgta tcaagctgcc
     1981 ttaaactccc acttgcagca ttgcgtggat tggcaaataa actttgattt aaaagggctc
     2041 ttttttcgtt gattttctca aaatcatctt ttaaaatcac cacttctcca cgaatttcta
     2101 tcctttcttt ataggctata tttttaggta tattttctat ctcaaaaaca ttaagcgtta
     2161 tatcctcacc cacttcgcca tcgcccctag tggcaccgct tactaattta ccattttcat
     2221 aaagcaaatt taaactcgct ccatcaaatt taggctctat aaaaaagttt ttttcacatt
     2281 ttgcgcgttt tgcccaagcc ctaaactcac tctcatcaaa cacatcttcc atcgaccaca
     2341 tacgctttaa atgagctatt tttttaaact cgctttgtat agtaggagct attttttgcg
     2401 ttggagagtc ttttgaaatt tcatctttat tttgttcttc aaaagctctt aattctctga
     2461 ttaaagcatc gtattcttca tcgctagcca agggttcatc tttttcataa tatgccctca
     2521 tccacaaatt tgctaaagca actttttcta aatactcttc ttttttcatc taaactccta
     2581 tattatccat tgcctgtgct aaagcaaaaa gttgtttgtg ctcatataaa tcatgcactc
     2641 ttataacact agcaccattt tcaaaagcct ttaaatgcaa atacaaagtt cctgctaaac
     2701 gatctttaat ctcgctttga aaatacgcat taatcacact tttgcgactc gcacctataa
     2761 gcaaaggctt attaaattgt aaaaaatgtt ctaagtgttt gattaaaatc atattatggc
     2821 ccgcactctt tccaaaacca atacctacat ctaaaatact ttcttttact ccaaaacttt
     2881 ctaaaagctc aagtttttct ttaaaaaaca aagtcatctc atcaagcaaa tcttcataaa
     2941 aaggattatc ttgcatgtta tttggattgt tttgcatgtg cattaagcaa tattttgcct
     3001 catacttact tgcaagtttg gctagattaa gatttcttaa acttgtaata tcattaatga
     3061 gtttaaaacc cttatttaaa gcatattcta gacaatattc atcaaaacta tctaaactaa
     3121 aaattgcttg ttcgtaataa tttttctcat aaattaagtc aagtactttt ttcagtcttt
     3181 taaattcctc ttccttacca caatactcac tcccaggtct tgaactaacc gcacctatat
     3241 cgatatattc aggctttaaa gcaagaaagt cattaagtct tttttcaaag tcttcttcac
     3301 tcacacgact ttttgcatta aaactgtctt cattaacatt aatcactgcc ataagctcgg
     3361 cttttttcgg ttttaaaaaa tctttttgca aaaaaagagc caaattttta agtccaaaat
     3421 cttgaagttt ttctttgaca ataagctttt gaatttgctc tttacttgcc attaaaagca
     3481 catttgaatg agtgattttt gcagtaatta cttctttatg agtaataagt tcagctccta
     3541 ctcttaaagc atcttgtttt aaaatatttg ccgcaggagt agaaatatct ttgataaaaa
     3601 taaaatgaat ttttgttttt tcactcataa tcttttgtcc cattttatga gggtttatga
     3661 aagaacaaag caaattaaaa tcggtgtttg gattgatttt aaaaaatttc attttatttc
     3721 tttgtatagt aatttagcaa aagagtagct aaaagcaccc cgcttttaga atttaatttt
     3781 gcaagctcat aactttcata aaaaaactct aattcttcag cattaaaatc tttatatttc
     3841 acacattctt tagcaagcaa tgcgatttga tccataagtt catttttatc caaattttca
     3901 tttttttgca aaaaatcaaa aagcattctt aaatccattc ttttaagatc taaatcaagt
     3961 tttttaactt ccttttcaac ttttcttttt tcacaaataa gacgtgattt tatagtaggt
     4021 aaaagtaaat ttttagaagg tatcacaata agaaatttaa tattttttgg aggttcttca
     4081 agaagtttaa gtaaaaaatt ttgtgcttct atcctataag aatccgccat taaaacaata
     4141 attttttctt cggtttctgc gatatagctt tctttttcaa ctgctcttgc atcatcaagt
     4201 aaaaattcat tttgtggcat aaaaaatctt aattttttaa taccaaaatt attaatcatt
     4261 tcttctttaa tacctaaaaa atcttcactg ataataatct tactaataaa caaaatattt
     4321 atcctaattg caccctggaa aataatattg catccaaact tacatcaaaa agttgatata
     4381 aactaataag cttgatatcc aagtctttat ctttagaatt taaataaaaa ctatcttgta
     4441 actgctcatc aaaaagccac aataaactat catctcttga tttagcgatt aaagatttat
     4501 tatcaaaagc acttcctata taaaaataca cataaccatt aggaaaagaa atgtcaagca
     4561 agtcattaag taaagctata tcttctgaac tttgtacttt cttcttgcat aaagaattta
     4621 acgacacaaa aggaagcatg ggacgagcgg cttttgaatt tatatttttt aaaaaatact
     4681 cttcatacca agatctttgt tcatcgcaca ttaagacaaa agtgcgtccc tctaaaagat
     4741 atttaagtct tgcagccatc aaaggagccc attctaaacg acgcgactcc aaccatgcca
     4801 taaaagctcc gccattgcga atattttcaa gagtaaaact taaaaaatca ctcatttatt
     4861 tatcaagtcc gtagcactca tgtagtgctc taactgcaag ttctccgtat ttttcatgaa
     4921 ctatcattga aatttttatt tcactagtag aaatcatacc gatattaatc ccctcatcag
     4981 ctaaagcttt aaaagcttta cttgccactc ctgaatgtga tttcatgcct acgccgacta
     5041 tagaaacttt tactacagca ctatcacttt ctatagttgt ttttgagctt aaaatttttt
     5101 gcatagcatt tttagctaat tcaagttcat tctgaggaac cgtaaaaccc aaatttgtag
     5161 cgccatcaac tccaacattt tgtataatca tatctacatt aatattttca tttgctaaaa
     5221 cagaaaaaat ttcagctgcg attccaggct tatcttctac atttcttaaa gttactcttg
     5281 cttgattttt atccaaagca ataccactta ctaaagcttg ttccattcca tcttcctttg
     5341 ttatcattgt tccttcgtta ttgttaaaac tacttctagt tactaagtta acatttaatt
     5401 tttttgcaag ctctacagag cgattttgca aaacttttgc acccaaactt gcaagttcaa
     5461 gcatttcttc ataagaaatt ttatccaatt tctttgcctt tggttcaatt cttggatctg
     5521 ttgtataaac cccatcaaca tcggtataaa tttcacacaa atccgcattt aaggcacctg
     5581 ctaccgccac agcacttaag tcgcttccac cacgccctaa ggtagttaca ttaccttcct
     5641 catctacacc ttgaaaacct gctataacga ctattttacc attttgaagt tctgatttta
     5701 tcgcttttgt atcaatatga tgaattcttg cctttgtaaa aacactatct gtaataattc
     5761 ccgcttttct cccagaaaat gatatagcag gataaccctt ttcatttaaa gcaatagaaa
     5821 gtaaagcact tgttacacgc tctccactgc ttaaaagcat atccatatct ttaccattag
     5881 gagttttact aaaatattca gcttgctcaa taagagtatt tgtcacccca ctcattgcag
     5941 atactacaac aacaagttga ttaccctgtt gcgcactttg gataacccta ttggctactg
     6001 cttcaatacg ctcaagtgtt ccaacgcttg ttccaccata tttttgaact ataagcattt
     6061 tagatataac ctttctcttc aaaatatttg atcactttaa cataaatatt ttttttgaaa
     6121 tgattaatca tttcaaaaat ttgtttaaca ctcacaaatt gataatcatc aaattcagga
     6181 tgtttggtat tgatattgat tgtagcaccg tgctttaaac gcactaaaaa atatttttga
     6241 atctgcccat cataaggata cattttttta acaattttac tcggaaaatc ataactcaac
     6301 cattctggat actcagcaat gatttcaacc tcatcagtac ctatttcttc ttttagttct
     6361 ctaaataaag cgtttttgac actttcacct ttatcaatac ctccttgtgg aaattgccaa
     6421 atattatcca tatcacttct tttagctata aaaatcttac actcaaaagg ataagaactt
     6481 gataaaacaa tagctgcaac atttggtcta taatttttct cgttttccac aatatttttc
     6541 cttaatttca aggatataat tttaacctaa atcaaatcaa atttttatta aaatacatta
     6601 aaaatttaat aaaatatttt agggttttta tgcattttta tattcatatt ccattttgtg
     6661 aaagcaaatg taattattgc gcttttacaa gtttgaaaaa aaatgattat gaaaaagcct
     6721 attttaaggc tttaaaagaa gatattgttt ttcaattaaa acaatttaac attcaatcaa
     6781 atcaaattaa aaccttattt ataggcggag gaacaccaag ttgtgtcgat gcgtataatt
     6841 atgaagatat ttttaaaatt ttatatccct tactagataa aaatgtagaa atttcatgcg
     6901 aagccaatcc caactcagca acattaaatt ggcttaaaaa tatgaaaaat ctaggagtta
     6961 atcgcatttc ttttggagct caaagttttc atcctaaaaa acttcacttt cttggaagaa
     7021 ttcacaatca agaaatgatt atcaaagcat tagaaaatgc aaataaagta ggttttaaaa
     7081 atatcaattt agatcttatt tatgatacaa aattagacaa taaaaaaatg cttgaatttg
     7141 aactcttaca cttaaaacaa atcaaggctt taatcacaca ccttagtgct tataatttaa
     7201 ccatagaatc aaacacagcc tttgccaaaa aagaacattt caaaaaaaat gctcctaatt
     7261 taatgaaatt ttttatcaaa caacttctag agcttgactt ttttcaatat gaaatcagta
     7321 atttttcaaa aactaaatct caaatttgca agcataatct tgcttattgg caaggaaaaa
     7381 actacctagc ttgtggatta agtgcagtag gattttatga aaataagcgt ttttatacag
     7441 caaaaaattt aaaaaattac atagaaaatc ctacttttag atctatagag caactaagct
     7501 ctaaagactt gaatttagaa cacctatttt taggacttag aagtatagta gggattgatg
     7561 aaacaaaact caatcaatgg caaaaagaca aaataaatat attattaaaa gaaaaaaaac
     7621 ttttttacaa aaataaaaga tattttaatc ctaattttct cattagcgat gaacttgctt
     7681 tatatctctc atcttaaatt taagtttttt aagtaaaata tttatttaaa atatcaaatt
     7741 aaagagtaac gattaatgag ttttggtgaa attatagtta ttttagttgt agcgatttta
     7801 gtcttagggc ctgataaact tccagaagct atagtacaaa tagcaaaaat tctaaaggct
     7861 gtaaaacgca acatagatga tgcaaaatca agcatagaaa aagaaatacg catcaatgac
     7921 ttaaaagaag aagctaagaa atacaaagat gaattttcaa gcactaatga aaatatacgc
     7981 aaaaaactca gttttgaaga atttgatgac cttaaaagag atattttaga taaaacaaag
     8041 gtagatttaa cctttgatag cagagatgat aacacaaaaa ataaccttag cggacaaaat
     8101 ttaaatacag aagaaaaacc aaatcttagc aaattagaaa cacaagataa aacggaaaaa
     8161 taaatgtttg aagaattaag acctcattta atagaactta gaaaacgcct ttttataagc
     8221 gttgcttgca ttgtagttat gtttattgta tgttttgctc tacgaagcta tatcttagat
     8281 attctaaaag ctccacttat agctgtttta cccgaagtag ccaaacatgt gaatgtaatt
     8341 gaagtacaag aagccttatt taccgcaatg aaggttagtt tttttgcagc ctttatcttt
     8401 tctctacctg taattttttg gcaattttgg aaatttgtag ctccaggact ttatgataat
     8461 gaaaaacgcc ttgtggtgcc ttttgttagc tttgcaagca ttatgtttgc cttgggggct
     8521 tgtttttgct attttgttgt agtgcctttg gcttttaaat ttttgattaa ttttggttta
     8581 aatgaagatt ttaatcctgt gattaccata ggaacttatg tagatttttt taccaaagtt
     8641 gttgtggctt ttggcttagc ttttgaaatg cctgtaattg cctttttctt tgctaaaatt
     8701 ggacttatag atgatagttt tttaaaacgc cattttcgca tagctatttt agttattttt
     8761 gttttttcag cctttatgac tccacctgat gttttatctc aatttttaat ggcaggacca
     8821 ctttgcggac tttatggact ttctatttta attgttcaaa aggtaaatcc tgctccaaaa
     8881 gataaagaaa gtgatgaata aagacttact tctttcaagc tatgattaca ctctagctaa
     8941 tgaactcata gccaactatc ctacaaatcc aaaagaagat gctaggcttt tggtttttga
     9001 tcgcaaaaac aaagaaattt ttcatactac ttttaaaaat ttacaagact ttttacccaa
     9061 ctgcgcgatt tttttcaatg ataccaaagt tattaaagca agaatttatg gcaataaagt
     9121 aagcggagga aaaatagagc ttttcttgca tcagcctttt ttaaattctc acaatccact
     9181 ttttctagct caaattaaag ggcgtgttaa aaaagatgaa atcttatatt ttaaaaagga
     9241 tttaaaaata cgcgttgtag aacttttaaa tgatggtctt cgaaaagttc aattttttca
     9301 aaatgataaa accttagaca cctcaaatct ttacaacctg cttgacaaga taggacatat
     9361 acccttgcct ccttatatta aaagggagga tgaaaaaagc gatttaaaag attatcaaag
     9421 tatctttgca aaaaatttag gcgcagtggc tgctccgact gcaagtttac attttagtga
     9481 gactatgctt gaaaatttaa gaaaaaaaca cgaaatttat catttaacct tgcatgtagg
     9541 agctggaacc tttaaaagcg tggaatgcga aaatatacaa gagcataaaa tgcatagtga
     9601 attttttaat attccgcagc aagcatgtga aattatagat tctaaacaag ctattttagg
     9661 cgtaggaaca acggtaacaa gaaccataga atattatgca agaactaaaa caaaaagcgg
     9721 tttttgcgat ctttttttac acccgcaaaa tccacctata agacaaaatc atcttttaac
     9781 caattttcat ttaccaaaat ctactcttat catgctagtt tcagctttta tcggtagaga
     9841 acagtgttta aaactttatg aactcgccat aaaagaaaaa tatcgctttt actcttatgg
     9901 cgatgcgatg ttaatcttgt gatttttctt taaattttat tgctatttta gcttgaagtt
     9961 ttagccaatc tttttgaagc atgataggaa aacctccata aacacgcccg ccttctaaat
    10021 ttttactcac accacctctt gcagctatag tgctaaaatc gcctattttt aaatgtccac
    10081 tcgttgcact ttgaccaccc ataataacat tgcgtcctaa ctcacttgaa cctgaaattc
    10141 cagtttgcgc cacaatgatg caattttgac ctatattgca attatgtccg atttgaacta
    10201 gattgtctac cttagtacct gctttgataa tagtactatc aaaaactgct ctatctatag
    10261 ttgtacaagc ccccacttct acaaaatctt ctaaaaccac attaccatta tgataaattt
    10321 tataatgttc gccgttttta ttgtgcgcat aaccaaaacc gtcacttcct attacacaat
    10381 tggcaagcaa atgacatttt ttaccgattt tagtgtcatt ataaatcact acattaggat
    10441 ggataatact ctcatcacca atgctgacat tatcgcctat ataagctcct gccataataa
    10501 ttacattttc accgatattt acattatcgc ctatataaac attaggcatg attcttgcgc
    10561 tttttgcgat attttgtact ttttctttag ctgtgcttat caaaggttta gcaaaaagct
    10621 tgcttaaaaa agcaaaactc aaatgtggac tttgagtaat caaagcttta gtatctttag
    10681 gtactaaatt ttcatattct ttagatacta aaatagcagc agctcctgtg tgaggtatat
    10741 ctttggtatt tttctcacca tcacaataag taagctctgt aaaatttgct ttcaataaag
    10801 aatttaaagc actgatttct atatcctcgc ctttatattc caagcttaaa aattctgcta
    10861 tttcacttaa tttcatttaa tctccatcaa aacagatcca ctgcgaacta tatcactagg
    10921 attgtatttt ttaattgttt ttaaaaaatt atcaattcga tttgcatcat cagcaaccat
    10981 taaaaacaaa aaattctcat tgctatttgc aatagtacca ttataagctt tcaaaacggc
    11041 atcaagtcca cctaaatttt catttaaagg aattttcacc aaagccattt ctttgtcaat
    11101 aaattcttcg ctttctatca ctttataagt aggaataagc ttatgaagtt gtttgactat
    11161 ctgctcaaaa gttctttcat ttcctgaagt gactatatta atacgagaaa attctttatt
    11221 ttccaaaggt gctactgtaa gcgagtcaat attataacct cttcctgaaa aaagtcctac
    11281 tatacgagat aaaaccccat gctcatttaa aacaattacc gataaaaccc ttctcattgt
    11341 ctatcctttg cctttggtaa aatcatatta taaatcgcac ctcctgcagg caccataggt
    11401 aaaacatctt caaagcgatc aatttttaca tttaaaagag aggttttatc actttttaaa
    11461 gcttggctaa aagcttgaat gaattcttct ttgtttgaaa tttcataacc ttcacaacca
    11521 aaaccttgag ctattttgat aaaatcaggc tgagtgctta aatcagtttg tgaaaaatgc
    11581 tctttataaa acatactttg ccattgtctt accataccta aaaaggcatt atttaaaata
    11641 atatttatag tttttatacc atactcatag gcagtcataa gctcttggat attcatcaaa
    11701 accgatccat cacctacgaa attaatcacc acttcttcac ccacagcaag ttttgcaccc
    11761 aaagccgcag gtaaagaata tcccatagtt ccttgccctc cacttgttgc aagttgtctt
    11821 ggataattaa aaggataaaa ctgcgccacc cacatttgat gctgacccac atcagtaata
    11881 atccttgcat ctggagccat tttcgcacat tcttcaatca cccattgcgg ttttaaaatc
    11941 tcattgctat cttcataaga aagcggataa agttcattat aacgctttaa agtttcgtgc
    12001 cattctttaa aagttgtgtt gaaattttcc tttttaagct cttctaaaag ctctttaaga
    12061 acttctttaa tatctcctac tataggataa tgcgcattga taatctttga aatagaacta
    12121 ggatcaatat caacatgaac tatagtcgca tgtttagcaa attcacttgt ttttcctgta
    12181 atcctatcat caaatctcgc tcctacactc acaagcaaat cacactcact taaagccata
    12241 ttagcagcat agcttccatg catgcctgcc attttaagat taaaaacatc atcacttctt
    12301 aaagttccaa gcgccatcaa ggtttcaact gctggaattt ttgtaaattt tacaagctct
    12361 ctgatttgct cacttgcatt agaactgata catcctccac ccaagtaaaa caaaggtctt
    12421 tttgcttctt ttaaaagctc tgcaaatttt ttaatttgct ttgagttacc cttataaacg
    12481 ggcttataag ttttcataga aatttcttta ggatattccc aaagtcccaa agttgcactt
    12541 acatcttttg gcacatctat atgcacaggc ccaggtctac cacttcttgc tatataaaaa
    12601 gcctctttta aaatgcgtgg aaactcttct atgcaagtaa ctaaataatt atgcttcacg
    12661 caaggtcttg aaatgcctac tgcatcaatt tcttgaaaag catctgtacc aataagagaa
    12721 tttgccacct gccctgaaat caacaccaaa gggatagaat cactataagc cgtagctaga
    12781 cctgtaatgg tatttgtaaa acctggtccg cttgtaacta tagctacgcc cacttctcca
    12841 ctcattcttg cataagcatc agtagcatgc aaagctgctt gttcatgacg cactaaaata
    12901 tgtttaaagt acttttgatt gtaaatttca tcataaatat taagcgcagc gcctccagga
    12961 taaccaaaaa caattttaac attttcttct tttaaagcct cgcaaatcat tgctgaaccg
    13021 cttaactctt tcataataac actccaaaaa attattgtaa aagctcttta agtgctaaat
    13081 taagtctttt gccatcaaca ctcgcaccta attttatttt agcttctttc attaccaaac
    13141 cttgttcttt tagtgaactt acacccaatt cttctataag ttgttttaag gctaaagtta
    13201 actcctcatc acttagttgt ttaggcaaat aaatttcaaa aagacttatt tcattttgtt
    13261 ctttttgtgc taaatcttca cgatttgcct taagataaag ttcgattgcg tctttgcgtt
    13321 ttttgatttc acttgcaatg attttataaa ttctttcatt atctaattct attctttcat
    13381 ccacttctat ttgcttaaaa gctgcattta gagttcttaa actatctctt ttaaaatcat
    13441 ctttttgttt cattgcctct ttgatatcgt ttaaaatttg ttcttttaaa gtcatttttt
    13501 tcctttttag ttaaaattac aagctttaag gtttaaacca aaaccttcta agcctatata
    13561 gtctttatca caactttgag ataaaagttt aatttcttct ataccaaaat atcttaaaat
    13621 ctgtgctcct ataccatagt ttttgtattg agtggtactg gatttttctc cttgcatgaa
    13681 aactataacg ccaccatttt cactaagaaa tttgatttgc tctaaaagtt ttgaaaattt
    13741 atctgaagtt aaaagctcaa aatcactacc actgatatga aatttaacat tttcacattt
    13801 tttaatatct ttaaagcaaa aagctatgtg ttgggtttga ttatgatcgc taaagataaa
    13861 tttttctgct ttaaagcctg ctaaaacact ttgacttttt tcttcaagct taataaggct
    13921 ttcatgtttt aggcgatatt ctataagatc gcttacggct atcatgttta gatcatgttt
    13981 ttggcaaaaa atttctagat cttctcttct tgccatatct ccattatctt ttacgatttc
    14041 acaaatcaca catgcacctt ttaatcctgc taatttacaa agatcaaccg tgccttctgt
    14101 atgacctgtg cgttctaaaa ccccaccttt ttttgcgatt aaaggattga tatgccctgg
    14161 tcttacaaaa tcactcgctt tagcattatc gtcagcaaaa atttgtatag tcatatttct
    14221 ttcataagca ctaactcctg ttgtagcatc ttttgcatct acggttatgg taaaagcagt
    14281 ttcgtggttt gaagtatttt taggcaccat taaaggaagt tcaaattttt ttgccaaagt
    14341 ttcatctaag gctacacaaa ccacaccacg agcttctttt atcatgaaat ttactttttc
    14401 ttgagtgcta aattgcgcag gaaagattaa atcgccttca ttttctctat cttctgcatc
    14461 taccataaca agcatttttc ctgcttgtaa atccttaatc gcttgttcta cgctaacaaa
    14521 tttcattttt atttccttaa aatttttaaa attataactt aaattgcttg acaaataaat
    14581 taaaattcat tataatcaca cttttaaaaa atatttattg gggtatcgcc aagcggtaag
    14641 gcaacaggtt ttggtcctgt cattcagggg ttcgaatccc tttaccccat ccacttctta
    14701 ttttatattt caaagtatct tatatgccgc gaagtagagc agtggttagc tcgtcgggct
    14761 cataacccga aggtcgggag ttcaaatctc cccttcgcaa ccagttatgg atttaaaata
    14821 aattttattt agatagattg tttaaataac tttttaaaat attttccagc cgtgttttca
    14881 gttctatagg ggctagaatt tttatataag gaatccactg cttaaccaaa tgcaaaattt
    14941 catcttcata ggaaacttga gtgcttaaag tatagcttgt ttcatcttca tcaatgattt
    15001 gataattact tagtatttct tttctaaaaa aatattcctt agcattttta tcaagtttta
    15061 aaatcacttc tttactttct ccaagccaga tattaggatc attttggatt tgttcctcaa
    15121 gtttttcatt gggaataaaa ttttcatttt tagtgcgaaa ttttgaaatt ttatccaaat
    15181 taaaatgttt taatttatca ttttcatccc ctaaaagata ccaaattcct ttgtaattta
    15241 cgagtttgta aggtttgatt tggcgttctt tttccttgta gaaaaaaatc aatacattgt
    15301 gtttgagtat agctacacta agatctttaa aaagctcata atccaccttt tgaaaacctt
    15361 cgttttttac catcaaaact ttatttaccc tatggcttaa aagatcaact ataaagcctt
    15421 gatcgagttt tggataaagc ttagcaatac cacttaaggt ggcgaaattt tgtatatctt
    15481 taaagcttaa ttttcccaaa gcaaagcttt ctaaaacata tcttccattt tcttttttaa
    15541 taggcataaa agtaagtctt tcgttaagat ctctttgtat ggttcttgta tcgacattaa
    15601 actcttgtgc aagctcttgg gcgcttagac tttccccatt gttaaatttt gataaaatct
    15661 gcaccaagcg tatgcttaat ttgtcgtatt ctttcatgaa atttccttgt gggttaaaat
    15721 gctttttaac aaacttacgc cttctatacc taaaatttca tttctaagtt ttttgacttc
    15781 atttaaactt ggagcttttg catgaacggc ttcattgcgg atttcttgaa tgagagtaag
    15841 actttttgaa aaaggataat tgataaattg agttaaactt tttcctaaat gacattggat
    15901 attttcatgt ctgagtagaa atttaatact tccaagattg ggtttttggg taaaaaaatc
    15961 tttaagtata aaagatttac cttggacatt ataagctaaa tcataaaggc taggatcttt
    16021 catacaagct tttaaaagaa cttttttggc aaaagcgtaa atttcatatt ctaaggtttt
    16081 ggagtatttg actacaatgc ttgtaaaatc atttaaaaga tcgttttcgc tttgtaaaag
    16141 ctctaattct gcatgaatga tattgcttat gctatcaggg tgcaagagat aaaaaatcct
    16201 tttgccaaaa acaaagcgta tgaaattttc ttgcatgact aggtattctt tgcttttata
    16261 cacacttaga taatgctttt catctcctaa aaaataagaa cactcttctt ttaatctcac
    16321 aggtaaagga taggtgtaat tattgccata gatagcatag gtgtgatcgt ttggggtgat
    16381 gaaattggct aaaaatttat ctcttaaaag actaaaatct tccctgacca attctcttaa
    16441 atcactgata ataaaaaagt cttccacttc taaatttttt tctttataat aactaggaat
    16501 caaactttca tcaacatttt tagaaatttt taccacctta gcgacaaata aattagcata
    16561 atcgcttaaa aaaagttgta agaaattttc ttcatttgta ctttggtaaa tttcttctaa
    16621 gaaattttgc ttttcttgat cgttgagttt tgatttgatt ttgccaaagg caacttggga
    16681 tttttcttgt aaaatgctta aatgttgctt gatgacatct tcttgataat agggattata
    16741 aaggattaaa aggtggttca tgctttgcct tattttagga tttctttgag attttgcttg
    16801 atttcattag gattttgctc gtattcttgt atgagatctt ttaaaatttc aaacaactcg
    16861 ttaaaatcct gcggatgttc ttttttaaaa tttactatca aatccaaagt tttgcaaata
    16921 ctacttgctt gatctttgct gtcattaaaa gcatttttta tatccaaaac catactaata
    16981 atacgagcac tttgcatagg gcttgaaatg cgtttaaata aaaatccttt aaacgcattt
    17041 gcaaggctaa gagatgagaa aattttagaa aacatctgtc tttatactgt ttctttgcaa
    17101 tctagacaaa ttttttgccc gctttcgtcg tatttccaat tgtgtcttgt ttgtcctaat
    17161 ctttcatgtc cgcataaatt acatttttcg tgcattctgc attttgaatc ttttttgatt
    17221 tcataataat tatgaaaatt atcaaacact tgaatagaac aaagagtaca tcgtctatat
    17281 ccataacaat tatcaggatt taatatttca ggagcttcaa aatcatgttg attttttgta
    17341 agatattttc cacaatcagg gcaaattttg gaaaaaaaac attttggttt atctttttca
    17401 ttttgatatt cacccgcgtg ccaaccaatc ccacatttta cttccattcc aatatcttta
    17461 acaacttcag cagtcttaat agttttgtct ttaattgctt ctgaagcatt taccgcctta
    17521 tcttttaaag aacttaaaaa attcataaat taacgcccta taaaatataa tacaatcgac
    17581 gcaacagaaa ctatcaaagc taaaattgaa atgctatttg taaaaacatt ttttctttta
    17641 tttaaaatat ctttcagttc attgatttta cattcttgct cttgaacaat tttgtcatta
    17701 taatttttat attgtataaa ttcttgataa tgtttttcta tgagtttata ttgttcatca
    17761 tcaatttgat tttttttatc taattctact tggatattat ttatcgtatc tttgtgtttt
    17821 tcatgatctt ctataaaact cagtgtgaac ttttgtattt gttgaaattg ttctttagcg
    17881 gctttagata aacgaattac cttgccatcg ctctttacaa aaccttgcgc aataataaga
    17941 gataaagctt gattcatacg cgtagcaata caaaaactgg aagtaaaaaa tattacaact
    18001 tcttttagaa ttgttgtcat ttgattcatt gattcattct gtaactctgc tacttcaagg
    18061 atcatattgg atttaatttc ttttttttct tctgatgttt ctccaagcca acgtccaaaa
    18121 attggtatat aagtttgcca atcactatct gtattaagat ttttggcttt ttgtgttcta
    18181 tcttttgctt tatcagcatt ctctgctgct gtttcaatag ctatagctat ttcactgatt
    18241 tttttattaa taaatttttg aatatattct tcatcaaggt tttcaatatt ttgcaaaaaa
    18301 tcttgatctt tttgtgtgat aagttctagc atcagttctc cttagtttga ttaagttttt
    18361 tgtataattt tttagtgata ttacaatttt caaattcttc aattgctgtt tctacttctt
    18421 gagaactttg ctctcttatt tggttatctt ttttgatttg ttgtatagtt gctaaagttt
    18481 cgttttttac aatatgataa gcatcattca atgcaaacca agttttggca attttgtatt
    18541 gtactatcaa atttttttga gttacaattt gtatttgtaa attgccaatt ttggaattgc
    18601 ttctccactt atccatataa aaaatagcta tagtgctcaa tacagcacca ccagccgctg
    18661 aaatacataa agaaagggca tcccctattg tttcatcggt aaaagggata ggtagtgaca
    18721 aaaatacatt aaatccaggt attgacagca gaaacttgtg gatcatttca cttcctaaca
    18781 ttgaaattgc agaaatcatc ccgctaacaa aaattttcga tgcttcaaag taaatttcat
    18841 cttttggtat atttttaggt ggattaataa tgatttttac agcttgatat agagaagtaa
    18901 agcctgcacg tatgatttgc actatttttt ttaaagttgt aaaaatagtg ttaataataa
    18961 aaaccaacaa attagaaaaa aatgcttgaa ttcctgcttc taaagaacct ttgaatatat
    19021 ccttccattt tgcctttatc ttttcccaaa ctttttccat tctgcgtgca aatcgtttaa
    19081 aaatttcttt aatattttct tttccaaact ctctaaaggt ggtttttaat tcaataacaa
    19141 cagcttcaat aaaatctttt aagacaactc caaaggcaga ataaacaaag attttcattg
    19201 aatctttagc acctgtactt aaaacttcat tagaatattt gacaattttt tcttttataa
    19261 ctttcttttt taggtttgat ttggctgtat tgtaaatttt ttcagctttt ttttcatcga
    19321 ttccatattt ttcaaaattg gtttttcctg tttttggatc aatttcttta ccccactcca
    19381 taagatctct atcaccttta gaagcattag cacttgcatc aagccactta agattgtcag
    19441 ggtgatttgc tatttctgcc ctaattgcat catctaaaaa taaatgcata ttaggatctc
    19501 tatcaatttc ctttaaagaa ataacatgat ctagttgcgc tttattcttt ccagcacccc
    19561 tttccatttc ttcacctgtg tattcactac gtacaatttt tggagaatta tctcttatat
    19621 tatcttttat tttatcatag tttgaatctc gtttatagcc ttgttgatat tttgtaagct
    19681 tttgtaaatc ttcttctgtt gctacaatac ctttttcaaa gttatgtagt gttgttacat
    19741 tcccaccatc ttttgcattt aatattgttg aagcgagtcc aaaatgccct gtcacagcat
    19801 ccatagcatt tttagtgcat tgttcaaaaa gtgtttgggt ttgctgttcg ggtaattttt
    19861 ccattaaatc ttcaagttct ttaagtgaat tttccaaacc tttatcaatt tctattctta
    19921 gacattcttt tttagataaa ttttccaact ctttttctaa atccgcataa ttggctttta
    19981 aatccaattc ttctaaatgt atataattat tcatatttta ataattcctt gtttttaatt
    20041 tttatatttt atcaaatccc cccccccagt caagggggaa gtgaaatttt taagttttac
    20101 gccatagcac tagcgctaaa attgtgatta aatatatagc acaaaatatt atattgtaag
    20161 gataaggttg catagaaaga aaaataagta tcgccatacc aacaaaaacc ataaacacta
    20221 taaaatataa actacacatc aacactatag caacaaagcc ggctataaga cttaaaattc
    20281 caagtattat tcccattgtt tattccacat aggagaactc cacacagaag gaaaaatata
    20341 ctgaggaaaa gtttgaaatt ttgtttgcag ataaaatctc tgtgtttttc tctccatact
    20401 ttcgcttatc atttttacaa ccgctaagtc atttttttcg ctttgtgttt ccaaaaaagc
    20461 acttaagcat tcaaattttt tagcatagtc gatcactttt atcatttgat ctttataaga
    20521 tgacaaaaga aattctgttt tatgattatt tttagaggta aaattttgct caaattctaa
    20581 aaattcctta gaattaaaat attttgaaaa gccgctataa cactccatgc attcgcaaag
    20641 aaattcttga atttgatttt tcttttgttc gacttcaagc tctcttttaa gtttgtattc
    20701 ttcggtattg atcatatcct tacagcttgg aacaatagca tgtgtatcaa attttctttc
    20761 tggcttggat aatttttcgt ataatttttt tatgccatat cctgtagctg taagagctat
    20821 accaccaaat gcgatttgtt ttaacatttt ctctccttgt tttaaaataa caaagaaagt
    20881 ataaaacacc cttgcgacag gttgtgtcgt aaaaaataac tttaaaatat taaattattt
    20941 gattaaagct agcctgtaaa ttcagtagtt tcatagccta taggtttatc tacaaaacaa
    21001 gatttttctt ttaaaaatac aacttctata gttccaacag gcccatttct attttttcca
    21061 acaataattt cagcattttc ttgcatagga tttggtataa aaagcctttg ataagcttta
    21121 ccttcagctt tagctttatt ctctctttct ttttcttctt gttctctata aacctcatcg
    21181 cgatatacaa acaaaatagc atccgcatct tgctctatag ctccactttc tcgcaaatca
    21241 ctcatcaaag gacgcttatt tgccctttgc tctaagccac gattaagttg tgaaagtgcg
    21301 ataataggca tatcaagctc cctagccaaa agcttaagtc ctcttgaaat ttcactaact
    21361 tgcaaatgtc tatcattaaa atttgaatta ctcatcataa gtcctatata gtcaatcaca
    21421 caaagtccta tactttcatc ttgagatttt aaacgcctta aaatagccct tacatcagcg
    21481 atagttgcat aaccactatc gtaaatatat aatttctttt gactataatc attacaagca
    21541 tctcctaaac gctcccattc atcatcgttt aaatctgcag ttaaaatttt ttgcaaagga
    21601 atggaagttt tggaagatag cattctttgc atgatttgag ttgcaggcat ttcaagagaa
    21661 aacaaagcca cgcctttttt ttgtcttaaa atcttgtcaa tgaaatttaa acaaagagtt
    21721 gtctttccca tacctgggcg cgcagcgatt attataagtt cacccccttt aaaacctttt
    21781 gtcattttat ttagaccttc aaaacctgta tcaagcccta taataccttt attttctaaa
    21841 gttttttgct ttttaaattc ttcaaaaagt tctgatatta ccatatcaac atctttaata
    21901 tctctagaat tcacacgatt tgtaatgcta aaaatttctt taccaatttc atctgcgatt
    21961 tcacttacag cacgatcttc attgatacga gttggcaaaa gatgcgcaaa actcaagagc
    22021 tgtcttttta cagacttttc gcgaagttca tttacataag caggcaaatc tatcatagaa
    22081 ggagtagcaa gaatttctgc taaaatttgc tcatctattt ttttatgttt tcttaaaaaa
    22141 cttacagaaa taggctcttt gttattacta caagctataa ccgctttaaa aatatcttgg
    22201 tgagctttaa gactaaaatc ttttgggcta atatcacctg ctatactagc ataagcttct
    22261 tcactcatga tacaactgct taaaatagct cgttctaaat ccaagtcata atactcttgc
    22321 tgcactaaat ttccttataa atataaatta attctaaaaa ttctatctaa aaaaacttaa
    22381 attataaaac ttaatttttt tataaatatt taatgtaata ttagttacaa ttataaatgt
    22441 aatttaatta caaacaacaa acatttcaag gagaacattt gaaaaaatat ttattttcct
    22501 gtgttttagc ctccatttta acccaatcag ctacggctgt agaatttcaa gaaggtttta
    22561 gtggaaattt aagcataggt gtgggtgcaa gggatattaa aagtaatatt tcaaccttgg
    22621 caaacagtga ttatctaagc agttacaatg ctgataattc agactcctct ttcattcctt
    22681 ttatcggtgt agaactttac tatggcaacc ttatagataa tgatagaatt tttattaaaa
    22741 actacaatgg aagagatatc agcggtatag ctttaggcta cgaaagagct tatttagagc
    22801 gttttagcac ttctttttct gtgatttcct ctttaagaga aaaagcttat gcaaatcctt
    22861 atgcaacagg aaatagagaa gaaactgatg ttgatagata tggttttaaa atctctcaac
    22921 tttatgaaag tgattttggg aaatttacca cttcatattt atttagcaaa aacaaatatg
    22981 ataaagacac tatcgcacaa agctctttaa aaagggaggg gtattatcac gaatttgaat
    23041 taaactataa ttatagctta ttaaacctag ggttaaatta tgattacaat gatgcagacg
    23101 gaaaagctca aagctattca agatatggtt ttagcatagg aacaaatttg gcttttgcta
    23161 atgattacat cttcactcca aatttaaatc ttagcaaata tgaagcagta ggaactgatc
    23221 ctatcttcca taaaaaacaa gatggtaata tagttaagct taatctaaaa gttgttaaaa
    23281 atcaattttt gggttataac ggactttatg gttttgcaaa ttatggtata gaaaaaagaa
    23341 atagtgatat aggattttat gatgaaacct atcaaattgt cctaactggt ataggatata
    23401 aattctaaaa attataaaaa agctcctttg ataaaattta aaaaagatct atctcctata
    23461 aagatagatc tttaaaaatt cttttaagaa aaatccaagc taaaatcaaa acacaaaatt
    23521 cagcaaaaaa tggacttagc catactccat ttaaacctat aaaataagat aaaaacaaaa
    23581 gaaagaacaa aggtataaat aaattttgcg ccaaacttaa aaccaaagaa aagcttgcct
    23641 tattaaaagc tgtcaaaaaa gaaccactta aaacattaaa ccatgcaaaa aaataattaa
    23701 aagcaaaaag catcaaagct gtataagcaa aagttttaaa ttcttgattg ttttcttttg
    23761 taaaaagcgt gattaaattt tctccaaata tcaatataag cactatagag aataaagata
    23821 aaaatccccc tgcaaaaaat accactttta taatagcttt gattcttgaa aaatcttttt
    23881 tagcatagtt gtaactaagc gcaggctgca ttgcatcacc catagcaata ataagcatta
    23941 taataaaact atcaatatat aaaactatag aaaaggctgc cacggcttga gtatcagaaa
    24001 tttttaataa aacaaaattc gcaaaaatac tatataaaga tcctgaaata ttgccaaaaa
    24061 actcactgct tccgttataa agaatatttt taaaaatttt taaattcata tataggctcg
    24121 aaattttaag ctctaaattt tgaaacaaga aaggaaaaat tccaaaaata ccacctaaaa
    24181 caagtcccaa acaagttgca agagcagctg aaaataagcc ccaacccaac tcgactataa
    24241 aaataaaatc aagcactata ttgctcaatg ctataatcac attcattacc atactataag
    24301 cagtttttcc gcaaattctt aaataattat ccaaagcaaa agaaagcata gtaaagggtg
    24361 caaacaaagc aaaaacaaac atacattctt tagccatcgt tttaatctca tcgctaacat
    24421 ttaaacaatc aatcaaaaca ggacctaaaa aatactctaa aattccaata aaacaagaga
    24481 ttataaaaat aatcaacata cttgagctaa atatctttct agctaaattc ttcttgccta
    24541 aacctaaata catcgaaatt tgcactgctg atcctatagc tatcatatca gccaaagcaa
    24601 aagacatcat gataaaggga ataatcaagg ctagtgccgc taaagcatca cttcctagat
    24661 attttccaac aaaaattcca tcaactatat aataaaaaga aataaaagcc atgcttataa
    24721 catttggcac ggcacatttt acaaaaagcc taaaagggct taaggtgcta aaaatacttg
    24781 acataataat ccttaaaata tttaaaatta aaaatatttt aaaccgctaa taaaatgcca
    24841 aaagtcctag tatgtaagaa tttaaataaa gtaatttcgc aataagttta ttaatattta
    24901 ttttattttg catatgaatt ttctagatta aactaaaata aaaatttagc ccaaaggcta
    24961 aattttaaag cacagaaaga attttcacag cgtcatttaa ccctgtaact atacttgctc
    25021 catttttagt agcaatatct cctgctacaa agatgccttt aacattgctt tgtttatttt
    25081 catccattaa aggcacgcct ttatcatcaa cattaatccc acatttttgt aaaaaatcaa
    25141 gtggagtaga accaccaata gcataaatga ttctatcata aatatcgctt gtaccatcgg
    25201 taaaatttac cttagccttg ccattatcat cctctacttc attaatgtca attcctagtt
    25261 ttaactctac cttacccgaa tttccagctt catgaatatc tttaagattt atatcattta
    25321 atcttgtgaa ttctttttta cgataacaaa ggctaacttg atttgaatta gccaaatcca
    25381 cagcgtattc tgctgctgaa tttccaccac ctacaacaag aattttttca tttgctaaaa
    25441 ctgaattggc attaaaatta atgatttttg ttaaagtcat aggaagtttg taatcaggtt
    25501 tattaggttt acccattcta cctatagcaa caataatgtt tttacactca taaacacctt
    25561 tagctgtgct tactaaaaaa actccatttt catttttaac actctcaact tcagaaccaa
    25621 attcaacttc tatattgtgc tcttttaaag cgttttgaaa agtttctata gtgctttctt
    25681 tggtgccatc ttcaaaagga acatgtccgt gattggttcc ttcacatccc ttataagctt
    25741 tatctactct tttgccatcc ttataaaatt gcattaaagt ttgacaaatg ttatttgatt
    25801 tttctagtat caaaacttct ttgtttttaa gcttggcttc aaccgcacag cctatgcccg
    25861 ttggacctgc acctactacg attaaatcta tttttttcat ttatatttac ctttcaattc
    25921 taaatttttt tgtataattt atcaagtttt ttgtaaataa aggattaaaa atgcgaaatt
    25981 tgcttgaaaa tattaagaaa aattctcaaa aactacttaa cttaacaccc aaagataaag
    26041 aaaaaattat tctaaaatta gctcaaattt taagagaaaa tttcaaaatt atcctagaag
    26101 caaataaaaa agatatggca aatttcacaa aaagcggagc aatgaaagat aggcttttat
    26161 tagatgaaaa acgtatttta gctctttgtg aaggcctaga aaaaatcgct cacatcgaag
    26221 atcctatagg caaaatttct aaaggctgga aaaattatgc gggtttaaac atacaaaaaa
    26281 taagcattcc tttaggactc atttgtgtta tttacgaagc aaggcctagt cttagcgctg
    26341 aaatcgcagc tttaatgata aaaagttcca atgcttgtgt atttaaaggt ggaagtgaag
    26401 caaaatttac aaatgaggct atatttactc ttgttaataa agtacttaag gaatttgatt
    26461 tgcaagattg ttttgctatg tttactcaaa gagatgagat cttgcaaatt ctagcttttg
    26521 atgatttaat cgatgtgatc atacctcgcg gaagttcaaa catgatacaa gaaattgcaa
    26581 acaatactaa aattcctctc ataaggcaag ataaaggctt gtgccatgct tttgtagatc
    26641 aaagtgctaa cttagatatg gctttaaaaa taatccttaa tgcaaagtgt caaagagtaa
    26701 gtgtttgtaa cgctttagaa acgcttttaa tccatgaaaa aattgctaaa aattttataa
    26761 gtcttttaat ccctgaattt gaaaaattta aggtaaaaat tcacgcccat gaaaacgctt
    26821 tggcttattt taacaactca aatttagaag tttttaaagc agatgaaaat acctttgata
    26881 cagaatggct tgattttgct ttaagtgtaa aattagtaaa agattgcgat gaagctatag
    26941 agcatatcaa taaacacagc tccttgcatt ctgaaaccat tatctcaaat gatgcttcaa
    27001 atatcgctaa atttcaacgc cttataaact catcttgtat ttatgctaat gcttcaacgc
    27061 gttttagcga tggaggagaa tttggctttg gtggagaagt tggaatttca accagcaaat
    27121 tgcatgcaag aggtcctatg ggagttgaag atatttgcac ttataaatat ataatcagtg
    27181 gggaaggaca aattcgagag tgaataaaat agaaatgcta aagcaacact ttaaagaaat
    27241 tgctaaatta aattcaagcg aacaagtttg gcaaatgcct ttttttgcgg ctttaggcgt
    27301 gggtatagtt ttagggctta gtgtattttt tggaaaatta aactatggac tcattgccat
    27361 gataggagct ttgtcttttt tatatgttcc aaacactcct ttatatcata gaatggctgt
    27421 tgtgatgtgc tgttcttttg gcatagtttc tagttttttc ttaggaattt taacccattt
    27481 tttgcctgca atttttgcct tcatccctat aggacttgtg gccatgggaa gttctatttt
    27541 aattagatat tataacattg gtgcacctgg atattttttc tttgtatttt cttgtgtttt
    27601 aggagcttat tctccttttg aagctaagga ttttatcttt ttagtgggtc ttgtttttct
    27661 tggggcaatg gtagctaatt taatggcttt gttatattct atcgttgtga tttatggatt
    27721 taaaaatgct ttacctagcg aaattccacc tagagaatac atatgttttg atgcagtttt
    27781 tgtggattct ttgatcatgg gttcttttgt ggctttttct atatttatag gaactttttt
    27841 agaacttgaa agaagttatt ggatagccat ttcttgcaca gctattatgc aaggtgtaac
    27901 tttaaattct atatggatta aacaaattca acgcatcata ggaacggcct taggagtatg
    27961 ttttgcatgg tggcttttat ctaaacaatt tcacgatata gagcttgttt tacttatgat
    28021 gtctttgttt tttataggac aatttttagt caatcgaaac tatgctttag ctatgatttt
    28081 ctttactcct tatgctactt atctttcaaa agcagctaat tttatgagtg aaaatgcaga
    28141 tacattgata ctcgctcgtt taattgatgt cgtaatagga agcattttag gacttttggg
    28201 tggttttgta atttataaac cttatctaag agtacatttt gaacgcattg caaaatacat
    28261 ctttaggata aaacgaaaag cttaaaagtc aaataaagca caagcattat cccctaaaat
    28321 ttgctcttgt tcttttttag atacaacaac ttcattaaaa gctgctagag ccgatgaaaa
    28381 attaacattt gcttcaaaat ttgtatgtgg ccaatcgctt ccaaaaacaa aattgctaag
    28441 tggaaaatat tcttttaaaa tttcatatat tttctttgca aattttacag cttgttcatt
    28501 attgacatag tctatttttg ctctataaaa accgctaatt ttaaaaaata ttctagaatt
    28561 ttttaaacaa attagatcct ctaaatttgt taagtttgca ttagctcttg ctaaatgatc
    28621 gataacaata ttacaaccat aaggaattaa atttttaaca atatcaacaa gattattatc
    28681 taaatctctt tgaatttcta tttgcatttt aagcttactt aaattttcaa aaaattgagt
    28741 ccaaaccata gttttaaaat ttggcaattc tttgccaatt aaatttaatc taactccaca
    28801 agcttttctt tcttttagtt ttttaagctc atcaaattta ataccttcat caaccacaac
    28861 tatagctttt atattttcat ctttttcgat actctgaagc aaaaattcat tgtcaacacc
    28921 taaaaaactt ggctgaacta aaaccccttt atcaaaacca taatgatcta aatttgcttt
    28981 ataatcttta aaactagcat cataatcagg cttatatctt gcatttgcaa ccgtatttaa
    29041 ctttttcaaa aatatatgtg catgagtatc aatcttcatt aaattatcct tataaaataa
    29101 aactcattat aatagtagct aaaatcgccg ctataaatcc tataggcaca gctttaataa
    29161 gtaaatcttt aaataatttt tccttatatt tgtcaggaca agatcctaaa attaaacttc
    29221 ctccagaaga aaaaggagaa atagcagaag cttgagcccc tacaacaata caagaaaaaa
    29281 gcaatgcctc gcttaatcca ctacttgcag caatgcttgg aactatagga aaaagcgctg
    29341 gagtaaccac gcccaaagtg cttgaaaaaa gcgacataaa agctgcaata gcacacatta
    29401 ttaacggaat aaaaatcaca ttgatctcat tttctacaag atctgaaaat aattttataa
    29461 cccctgcttc aaccgctatg ctaattaaca tccctactcc acaaatcatt atcaaggttc
    29521 cccaaggaat taaagcaaca acttgtttct catcggccaa ttttaaaaat aaagcaatgg
    29581 caacaaaaat catggctatc atagctatat ctattttttt attaaaataa ctaattgtct
    29641 cattatgtgg aaaaataata tttagcacag gaaagattaa aacaacaaca atcatcataa
    29701 acataagaat taaagtagtt ttttgtttat aatcaaatga atcaggtttt gaaataacac
    29761 tgatttttat attattttta aaagcattaa acacaaaaaa agataatacc acaataggca
    29821 aaattatagt aaaagcaaaa ataatactag aatttacaaa agcttcattt gcttcaatgc
    29881 ctgaattttc catcaatcct cgaaaaataa tcccactttg agaagtcata aaatttgctc
    29941 ctcccaaagc accatagttt atagccatag ctccagcaat tttgcttaaa ccgattttat
    30001 cgcaaagtaa aaaagtaagt ggtgccataa aagctaaaac cgtataaaaa cctgctccta
    30061 aagcagctat aatagcacta accacaaaaa taacaaaagg aagcaaataa ggatgattag
    30121 caaaacgata catcaaatgt ccagctaatt tttcaagagt tccatttacg gttgcaaaat
    30181 tataaaacaa tgaaacagca aaaataacaa aaaatataga aataggccaa aaagctatga
    30241 tttttttagg agctaaatcc ataaaaaaag ctcctataat ataagcaaaa atcatagcaa
    30301 aaattccaac attatgtcta gtaatatagc ccaaaataat agccactata atactagaga
    30361 tgattaaaaa aaccattatc atcctttaaa atattatagg gcttataata tcaaaaaata
    30421 tatttttcaa agcataaaaa caaaatctaa atttaaaaaa tatctattta gtaacaaatc
    30481 tactcatctt atgaaatttt ttataaaata tccacatcca tagcaagcaa agcaaagctt
    30541 cctaaccaat gcgacccaag ataatcatct tctatatgag ctatggcttt atcaaaatgc
    30601 tctatagcat tatttcttaa aagaattttt aaattttcat cgcaaaaatt tgaaagtatt
    30661 ttaaaacacc aagcacgact taaatttagc ccatctagat gtgctatttt accatcgctc
    30721 ctatcactca cactcacagg ggtaaataaa gttacaggct cttttgcttc taaatttggc
    30781 aaatatactt taaaaaattt tacaaaatca tttttaggta aaacagcact taaaagcacc
    30841 gcttccatca aaacaggaga taaaaactca tctccacaag gctctaaagc ttgcatattt
    30901 ttatcattta aaaaccactt tttagcactt tggatgatgc aatactctaa ttcttgatct
    30961 tttttaaatc ttgcatactc taaagcaaaa tacaaagcaa aagagctatt aaaatgggtt
    31021 ccaactcgta taggataatc catcttaggc aaaaactcct taaattcttt aacaaaaaaa
    31081 tcagctatgc cttctaaatt tttagcccaa attttagctt tgtcattttc tttagcaagt
    31141 aaatttatct ccaaagccag ttttaaaaac catccccatc cataaggtct ttcaaaacct
    31201 ttgtgcgcag ggttttgaag atacttaagc tctccttctg ctttttcttt gctaaattga
    31261 gaatctaagg ctttgatgat ttcatccttt ggggcaaaat gagaaaaatc ttttaaaatt
    31321 ttcaccaaaa gccagtgaga atgcacgcta gaatgccaat cataagaacc ataaaatata
    31381 ggatacataa gttttggcgg tttaatatca ttgatatcat taaaagaatg tgtgatttta
    31441 tttggcaatt ctctaaaaat attttctagt gcaataaagc taaattgttt tataaatttt
    31501 tccattgttt ctccttaaaa tctaaaagct aaaaaataca ttaaaaagat attagctaca
    31561 agcaaaacaa gtcctgacat aaactgggct ttaattacgc catttttatc atctaaattt
    31621 aaaagtgccg caggaactat attaaaattt gcagccatag gcgtcattaa agttccgcaa
    31681 aatccactaa gcattccaat cgctcctata atagcaggat ttgcatgcat ttgtatgatt
    31741 aaaatcggca aagcaatagc agcagtaatc acaggaaaag ctgcaaaagc attacccatt
    31801 actatagtaa aaagcgccat agcaatacaa tacacagcta ctgcaataaa agcattatct
    31861 aaactaatat aactagataa aagtttagat acttgatcgc ccattcccgt agaaacaaaa
    31921 actactccaa gtgtagccaa aatttgcggt aaaagcgccg cccaactaat gtgatccata
    31981 gtatgtgctg catccttaac ggctctttta ggagaagcct taaacataaa acaagcaacc
    32041 actgaagaaa taattatacc tataatcaaa gccatcaatg tagcattttt attttcaaaa
    32101 aaactcaaat agggaaataa aaaagtccca ataagtgtaa tcaaaggaac cattaaagca
    32161 ggaataaaaa gtttattttt ataaatattt gcatgtttta tctcgtattc tttttcttct
    32221 ttactaactt caatctttgc tggttttaat aaattaaatc ctgctataag tgctagtaaa
    32281 atcactatac aacccatcac aaaatgaggc aaaactcctg ctagtaaaaa agtaaaacta
    32341 taacttatcc agaatacccc gccgcttatt cttgatttta tatctttagc ttgattagaa
    32401 aaacttaaaa ttccaaaaac taaaaataaa attcctacaa tataataaag caaatcaaga
    32461 cttatcatca ctcaaccctt tataagtttt ttctaatctt ttatcaaata aataaagtct
    32521 agaacaatgg ataattaaag ccaaaattcc agttggtata gcccaaactg ataaatgcaa
    32581 tggctcaaca ataataccat tgctctcata aaaagcttta ataaataaaa tagaatgcac
    32641 ggctataaaa atatcctctc caaaaaatac agcaacatta tccgttcccg cagaaaaagc
    32701 tttgattttt tgactatctt tatgtgttaa gtttttaaat ttaagcttag ctgcagcttc
    32761 tgccataggg gctattaaag gtcttatcat ctgtgcatgt ccgcctaaag ataaaagccc
    32821 taaagctgca gtaacttgtc taaaaacaaa ataacacatt aaaattcgtc ctgtactggc
    32881 aacttttatt ttggatatta aatttttagc ctgctctctt aagcctttgc gttccaaaac
    32941 agcaagtaaa ggtaaaataa gccaaattat agcaacatag cgattatcta caaaagattt
    33001 tcctatatca ctaacaacct taacaaaatc aaaacctgaa acaagtccag cataaattcc
    33061 aactgaagtt accactaaaa aggggttaat ctttaaagca aaacctaaaa caatcaaagg
    33121 tatagaagca agaagtaacc attccatcaa ccatctccac aatataaatt agaaatatta
    33181 tagaaatttt aaattaaaga aaagtttaaa aaaatatttt taagaatgga atgagaaatt
    33241 aagtaacaaa ataaatttta tataaattta aaaaagcctt ggaatagtcc aaaagctttt
    33301 ttgtattact tgttcgctct ttctatatac tcaccacgca cagtatcaac gcgtataact
    33361 tcaccttcta gcacgtgaaa aggaatttgc actactgcac ctgtttctaa tgtagctggt
    33421 tttttatttg atccttgagt atcaccctta aaatttggag ctgtttcgat gattttgagt
    33481 tcaacaactt gtggaacttc tacgccgata gctttaccat tgtggaaaag cacatctacc
    33541 atcataccat caagcatcca tttttttgcc tcacctacat catcatcact gatagctact
    33601 tgttcatatg tttgtgtatc cataaattgg caattttcac catcatcata aagatactgc
    33661 atagttttat cttctaaatt tggagcttca catttatcac ctgcatggaa agttttttca
    33721 agtactttac catcaataaa agatttgatt ttaatacgca caaaagcagg acctttgcct
    33781 ggttttacat gctgatactc aactatttta aaaggaattc catcgatttc tattttaagt
    33841 ccctttttta aatcacccat tgaataagat gccataaatt tcctttgtta aaaaataaaa
    33901 aataatttta tcaaattttg attgatatca caataaaatt attttatttg atgaaaaaat
    33961 aagtaaaatt acgttaaaat ccaaatttaa agcatagtaa atgctcgctt ctttttagaa
    34021 gaggaaagtc cgggctgcta aagacaaaca ttccatctaa cagatggcta gggtaaccta
    34081 agggatagtg caacagaaag aaaactacca cgcaagtgga aaaggtgaaa cggcggggta
    34141 aaagcccacc agcgattttg gtaacaattt cggctatgta aacccaatgt gcagcaagaa
    34201 gggatggtta gcgtctttgt tttaaccctt cgcttgattt tgtttgcaaa aacaaaacta
    34261 gataaatgag cattcaagac agaactcggc ttatcgctat gcttttttaa gatttaaaat
    34321 atgtcaacgc tttttgaaat ttttgaattt caacggcttt tgtttttttc ttttgttcaa
    34381 tcagcataac agcttcttgc aaaagagctt gaacttgata aaatagatca tttgcatttt
    34441 cttttaaaaa atcttctgaa ggcgattctt tggttaaatt tttaataaaa gctttcatat
    34501 caagttcatc aagtaaattt tcaagtttat tgacatcttc ttggattaat gcaagtttaa
    34561 aatcactgag ccactgtttc attgttatgc acttctctcc aagcttctag caaacctttg
    34621 gttacattta taacttcatt gattctatct tcgttatttt ctaaatttgc caaagataaa
    34681 agttgaattt ctcttgtata aagcccgctt aaataatgtg ccacttctcc gcctttttca
    34741 tagtttaaag tattaataag ctctataaaa atagccgtgg ttctttttac aaaatacact
    34801 ctttgttcta tatcttcatt tcttatggct actttagctc ttgcacaaaa acgcaaaatt
    34861 ccctcataaa gcatttcaat aagtttttgc ggggactcta tccccacttg attttgagaa
    34921 taagcattat aggctaaatt attttgcatc ttttttatcc ttaattatta gaattgtttg
    34981 ccgcattaat catattagtc acagtattta gctgttgatt gagtttattt aaaatactct
    35041 catattgcaa ccattgattc gccattgtat catatcttgt atcaatcata gcctgagtcg
    35101 agtctttaga ggtatttaat gatttaatat catttgtcaa actctcatca tattttgtaa
    35161 ttgaaccatc ttttccagtc atctcttgca acgtggcttt taattttgaa aaaatacctt
    35221 taccttctat aggcttagag gttatattta cgtcagacaa acctaattcc ttgagaatgt
    35281 tagcatctcc tttgattgaa aaatccgagc taccatctcc actaaaattc aacctaaacc
    35341 ctgtaacatt gttttgatta taggattcaa ccttaacttt taagccttca atacctttac
    35401 tgtttatatg attagctaaa ttttgaagca attcttcctc tgttttccct gttaatttaa
    35461 aattagtacc atcagaattt ttagataaat catatgtttg attattaaaa actatagtaa
    35521 aatctcctgg tttaaattct aaaccattag tattacctcc attggaatta agatatttac
    35581 ttaaacttcc tgtcttaatt acctctcctg tgtgattaat gtcttcgtat ttagtaatat
    35641 ttgaaaaaaa actttcagta gagtctggat cttctttaac tttttgttca aatttagaag
    35701 aatcaaaact caaagtgcct gcatcattta aacttaagcc aaaatcctgc atagaaagca
    35761 taaccttagt gtttacttta ttaccatttg catcttcagt agttccatca acaacttgag
    35821 aatcaaacaa atcagcaaga atgcttgagc gtattgaatt tacttcactg atgccttgta
    35881 aagttccttt tgttccagtt tcactattat agtcagttgc agcattaaga ttggttacta
    35941 aatcattata agcatccacc aaatcttgca tggcttttgt cacaccttca aaatcttgct
    36001 gtacatcaaa attaatttca cctgttttat ttaaagttaa agtcattcct acaccaagat
    36061 cggtaacagt attacttgat ctaaacatct taataccatc aagtgtgaat tctgcatttt
    36121 gcgcagtttg gatatgcaaa gaagcatcct taataccata acctttttta tcgttagctg
    36181 gatcaataga actcgtcgta tctaattccc atccaagact tttgaatatt ttttctgcct
    36241 ctgaatcact tttatactga ccctgcgcat ctttttttcc tgcatagaaa cttatcgcac
    36301 tgtcttcgcc tgtttcttta ctggttaaag ttaagcggta aggagtacct ttctctcctg
    36361 tgtttacaat cttagcgaca atctctcctc cactagcttc attaatttta tcagctaaat
    36421 ctctataggt tgtgttttta tctaccgtaa cagtatattc tttgccattt gaaaaaaaag
    36481 taagatcggc agttccattt aattttgcat taacaaaacc accatcattt gccaatcctt
    36541 gactttgata tacatctttt tgtgcaagtt gagtaacatt gatattcatg ctttgtaaag
    36601 caacacccga attaactgta agacttgctg gaggattatc gctaatactt cctacaactt
    36661 ttcttttcgc aaaaaccgta gcatcggcta atgatgaaac agccgtctga aaacttagta
    36721 atttagtttt gatttctgtt aaatcttttt gtttggttgt attttcttca atttttttag
    36781 tataaggatc aatacgagct ttttgctctg cttcttttaa tttatctata gtatcttgag
    36841 ttaaaacccc agaaccaaat cctaaactag atagactacc aaatgccatt tttaactctc
    36901 cttatcaaat atcattccta tcacatccct aaaatactca gctaatctca tagcttcttc
    36961 actaggaatt tgacggattt cccttccagt gcttttttca gtcacgctaa tatacataga
    37021 accgatttta tcactataac caaaacgaac attggtatct agagaatcca tttgctcatt
    37081 taactttttt gtaatatcag ccaacttttc actcacacct cgttgctgtc catcatcgcc
    37141 ttcttggcct tgacttctat cggtttgaat gtttaaacta gcctgtgtct cacttgttct
    37201 ttggctaatg tttgccaaag ctgtatccat ttgcccattt gccttcgata tttccatttt
    37261 aaaatccttt ttaaaatttc ctattgctag ttaaaagctt atatcgacaa atttataaat
    37321 ttatgaacac ctataaagaa aattttattt ttcaataata aaaaataata agcaaaaact
    37381 gtgccaaaat tttaaaataa atctcaatta tcttaaaaaa tttcaaattt attaaaaaga
    37441 tctggattat tttctaaaat attacgcaag atcaaatctt ctatcacgct tttagtgcaa
    37501 tctgtttgct taggccaagc tcttaaataa ccctcagctt cacctttagc acttgcatct
    37561 actccaagtc tttcttcttt gataaaaata tctcttttag catctatatt atttaccaca
    37621 cgccaaacaa gcatataaga attttcaagc ttattttcag catctaaaaa tactaaaatc
    37681 ctaaaatgtt ttttaaattc taaaagtttg tcaaaacttt gttcgatttt ttctttttta
    37741 tcaagcaaaa tacaaactat aggactttta ctttctttat aaaattgctt taaatttaaa
    37801 agttctacct tagttttaaa aagttctagt aatttttcat cttctaaaat ttcaagctct
    37861 tcaacttgta tttcttcaca agcatcaagt cctgctttac ccccaaaaca agaattaggc
    37921 gaagcatgat ctaattgatc acaaattcct tctgaaatta aaattttttc cgcatcaaaa
    37981 cgatttaaaa tataaggaat taaagcatca taatctttca aagaaggtgc atttttatcc
    38041 acaaaaattg catgtttaac aaaactcatt tgccctactc cccaaaatgc atgcataatt
    38101 tgttgcgcat gagcaggata ttttgcatcg atttttgcta agataagatt atgaaagact
    38161 ccattttcag gcatattata atcaattaaa tcaggcaccg aagtttgaag caagggtaaa
    38221 aaaattcttt cagtaccaag ccccatgatc ttatcttcta aaggaggttt ccctacaacc
    38281 gttgcttgat agatcgcatc ttttttagca taaatttttt ctactttcat cacaggaaaa
    38341 agttcagcag gagtataaaa acccgtatga tctccaaaag gaccttcgat tttaaactct
    38401 tctaaatcca cataaccttc aataactaca tcactatcat aaggcacaaa aataccattt
    38461 tcacaaggag taagttttac aggagttttt ttaataaaac cataaagcaa aagttcaaaa
    38521 attcccttag gtaaaggtgc ttgagaacac caaatataaa gcggatctcc acctatggct
    38581 atacttacag gcattttttt aaaaccagca tttttgtatt cgtgataaaa atttgctcca
    38641 tctttatgaa tttgccaatg cattaaaagt tcatttttat cactcatttg caaacgatac
    38701 attccaagat tattttgagt tttatctaaa ttttgtgtat aaacttgccc catggtaata
    38761 aatttacccg catcatcttc ccaagttttt agcatgggaa gttcttcaag ggagtttaaa
    38821 atttcataat catacaaggc tttatttttt ttcagtcttt taggaggaat atttttaaaa
    38881 cttaacaaat tcataaaaaa atccattttt gctttaaaac tcgtaggaat atgaagcttg
    38941 gtgagttttg aaatttcttc agccacctct tcataatcac gcccaaaagc taaatttaaa
    39001 gccttttcat tgcaaaaagt attcatcaaa acaggaaatt tatattgttt atttaatttt
    39061 ttatctatag gatttttaaa taataaagcc ttaccttttt ctcctttttt agcttctata
    39121 taagctaaat gagcgatttc aagatctaca tctacaggct cttcaattac ccttaaaaga
    39181 tcattttctt ttaaaatttg aataaattct ttcatatcat actctcagct ttttttaaaa
    39241 gttctttagc acctttagca ataaactcct tagccaaact ctccccaaaa cctttaaaat
    39301 cattcttttt aatcattctt ttatctttta aaatttcact tccatcgggt agtccaagta
    39361 ccgcacgcac acaaatttca tctcctaaaa gctctgcgtt aatacctata ggaacttgac
    39421 aacccccttc taaagtagca ataaattctc tttcaatgct tgtttcaatc aaagcatttt
    39481 catcatttaa acattttaaa agttttaaaa ttttttcatc atttatactt tctataccta
    39541 aagctccttg agaagctgca ggaataagct catctttact aaattcataa acaaaattca
    39601 cttgcttatc taagtttaag cgtttaattc ccgccatagc taaaataatc gcatcaaatt
    39661 tattattttt taatttctct atacgagaat taacattacc acgcaaagaa acaatttcta
    39721 aatcaggtct taacaataaa agctgcatct tgcgtctaag actagtagtg cctatttttg
    39781 caccttttgg caaagaaaga aaatctttat aattttgact tagcatagca tcattgcttt
    39841 gctctctttt acttaccgcc gccaaaacta aaccttgagg aaaaaaacta ggcacatctt
    39901 ttaaactatg tactgctaag tgtgcttctt ttctcaacat actttcttca agttcttttg
    39961 taaaaagtcc tttaccacca atttttgcca aaggagaatc cagcaaaaca tcgccttttg
    40021 ttttaaaacc ttctaaaagc acttcaattt gatgtgtatt ttttaaaatt tgggctacat
    40081 gctcactttg ccaaagagct aattgacttt ttcttgttgc gataataagc ttcattttct
    40141 atcctctata atttcaacat caataatttc ttcattagaa ttttgatact cttgcttggt
    40201 gtattgatat tttgatttag ttattaattt caaagcaata ccaaagaaaa atacaaaaat
    40261 tccaaaaaca cttgtaataa tccctggaaa aataagtaaa aaccctgcaa taacaaaaga
    40321 aaattgtgtt aacatatcct ttaagccgcc catttgaaat tcaagcatat ttttccaaaa
    40381 aattcccaat aaaaccgcac caaaaatcat actcaaaagt atgaaaaata aaaaattacc
    40441 aaaaccaaaa aacactataa aaagtatact tgcaataatt tcaagtacaa ataaagggct
    40501 taaacttaat ttataattca taacactttc tttttaagaa tttccataag ttcatcagtt
    40561 tttataagtt cttttatcaa accttctctt tggataaact ctatttcatt attttctaat
    40621 cctttaccaa taactaatgc ataaggaaaa cccataagtt caaaatcatt cattttaacc
    40681 ccaaaacgct catttctatc atcaagcaat acttctaatc caagattagt taaatcctca
    40741 taaagcttat tagcaaattc taaagccttt tcatctttga gatttgaaat aataatttca
    40801 agcacaaaag gagctaaagt tttattccaa atacatcctt tttcatcatg atttgcttca
    40861 atagctacag ccaataagcg tgaaacacct ataccgtaac atcccatgta aaaaggctgg
    40921 cttttgccat tttcatctaa aaaatttgca ttcatcgctt tagaatattt ttgtccgagt
    40981 ttaaaaatat gccctacttc tatacctttg ctttgtttta attttgctcc acatttagca
    41041 cagcaatccc cttccttaac ttcaatcaaa tctttaaaac gatctttgtt taaatttaca
    41101 acatcaatgc cgattaaatg ataatctttt tcattcgcac ccataatcat ctgcttttcg
    41161 ttttcaagct caaaatctat ataaaaatct acatctttta atcccacaaa acctataaaa
    41221 ccagctacca aaccagcttt ttctaattct tcttcgctcg catcgactag ttcaagggca
    41281 ctacaagcat tttgagcctt gatttcttgt aaatcatcac ttcctcttat aaaaaacaca
    41341 actaatttgc tttcattttc gtaaatagct ttttttacca ctgctttaat cgtataaaaa
    41401 gcattgattt taaaaaattg tgctaaagaa tctatagttt taatatttgg agtgtgaaat
    41461 ttactcgcat aatttgcttc aggacgctca tcttgacaag tttttttagc tctttttgca
    41521 gcttcaacat tagccgcata atcacaattt tcacaaatta aaatatcatc ttctccattt
    41581 tttgctaaaa ccataaattc cttagaacca cttccaccaa tagccccact atcagcttca
    41641 actgctctaa aatcaagccc cattctttgt aaaatttgag aataagtttt atacataagc
    41701 tcaaactcac gccctaaatc ttcttcatta gcatgaaaac tgtatccatc tttcattaga
    41761 aattcacgac atcttaaaag cccaaatcta ggccttgctt catcacgaaa tttaagtcca
    41821 atttgatata aatgcaaagg aagttgttta tagcttgtga ttttgttttt taccaaagaa
    41881 agcatagctt cttcatgtgt tggacctaaa acaaattcat tttcttttct gtctttaaaa
    41941 cgcaaaagtt cttttccaaa aacattataa cgcccacttt cttgccacaa acttgcagga
    42001 gtgataaaac taagatttac ttcttgtgct ccagccttat ccatttcttc tttaactata
    42061 tttttaatct tatctaaaac tctttttccc aaaggcaaga aattataaag tccactgcca
    42121 atttgttcta caaaacccgc acgcgttaaa aaaatatgac taggcaaact cgcatctttt
    42181 ggtgcttctt ttaaacttgg tgcataaaat ttagtaaatc tcatcattat tctccatatc
    42241 aaattcacat ttatattgat ttaaaccttc aagattattt tgtaaatcaa aaacataacg
    42301 catagcatta atcactgtat cgctttgcat tttaccttgt aaatgtttca aattcacagt
    42361 aggtgtgtgt aaaaaagcct taaaaacttg atgaatcaac tttctagcct cttctttatc
    42421 agattttttc aaatatcctt tttttaacgc aatttcaagt tgtttatctg catattcttt
    42481 agcttgcaag cgtatggctt tgataatagg catcaaagcc aaatcgttta aatacctaaa
    42541 aaattcactt gtttcacgac ctattatccc ataagccata cgagcttctt gttctcttag
    42601 tgctaaattt ttttgaacca caatctcaag atcatctacg gcaaaaacag atatattttc
    42661 attttcattg atatcaatat cccttggaac tgcaatatca aaaaaatacc ttttataagg
    42721 aagttcttct attagagaat ttgtaataat agcatttggt gcattagtag ctgagaaaaa
    42781 aaactcgtat tgatttaaat atttttttaa attttctaaa ctatcatatt cgcttaaaac
    42841 accaagtctc tcacacaaat ctttagcttt ttgtaaatca cgatttaaaa taatcacttt
    42901 agcacccgca gcaattaaat gttttgccgc aagttctccc atctctccag ctccaataac
    42961 aacagctttt ttttgcgtta aatctgcaag ttcttttgct tttgccacgg caacactagc
    43021 tacagagata ggatttttag aaatttgagt ttcattgcgt accttagcag cacatttaaa
    43081 agcactatgt actgctcttg aaagatgtac tccgcaaaaa ttatttttta ctgcaaaagc
    43141 aaaggcatct tttaattgcc ctgctatctg agtttctcca accaccaaac tatccaaaga
    43201 acttgctacg gaaaaaagat gatggattgc tccactatct tcaaaaatat cagctttttc
    43261 aagtaaaata tctttatcca catcacaaag caaagccaaa gatttaacaa taaactccgc
    43321 acaagccatt tttacaaaag caacaatttc aacacgattg caagtactta taaccaaaca
    43381 ttcttcaata ttttcatgag tgctaatgat ttttaaaaac tcactttttt tagcttcatt
    43441 gaaaaagctt aacttttccc ttaaggcaat atctgtattt ttatgagtaa aagatataca
    43501 ataatacatt aaaattccct atctatcata gctttaataa tatcattaag cttgttatta
    43561 tcatattttt caatcgcttt actagccttt tttgcataag ttttagcttc taaaatagct
    43621 ttttctaaag ctttttgttc ttcaaattta gtttttagcc actctttttc attttcattt
    43681 aaatcttttt taaataaagt ctgcaaatat atcctatctt gttcttgcaa attttcataa
    43741 agataaatat aaggtaaggt agtcttaccc tctttaaaat cattcatagc aggttttcca
    43801 agaatttttt catcactctt aatatctaaa atatcatcaa tcatctgaaa agcgagtcct
    43861 aaattttttc catattctgc aaaatctttt tcatataatc cagccaaaat agctccgcat
    43921 ctcgcacttg cttcaatcaa aacagctgtt ttattataga tcattttcaa ataagcttct
    43981 ttattgatat taaatttctc tcccaaatca acatccataa gttcgcctat agcaagcttt
    44041 acaacagcat ctgaaataat acttgcaaat ctagcatcca ttttgcttaa ttcataaaag
    44101 gcttttgaat acaaaatatc gcccaacata agagcatttt ttgtaccaaa ttcagcatta
    44161 acagatcttg ctccacgcct taattcactc tcatcgataa tatcatcatg taacaaacta
    44221 gcaagatgta tcaattctat agccgcacaa attttaaaag caatctcact ctcatctgcg
    44281 atagctaata ataatttaga gcgtaatttc tttcctgatt ttacatttga aagcatattt
    44341 aaaataggtt catagccaag ctcttgtaaa aactgtttta ttaattcatc tattttttgc
    44401 actatctttt ccttgttaat tgctattatt attttctttg cttgttaatg gttttacctg
    44461 aggttcgtta aaattaatca taggaacaac ctgattattt tgcggtggat tttgtaaagc
    44521 tttttttctc ggatctaaaa attctaccat taagcgagat tccttatctt ctatataaac
    44581 cgtaaaagtt gccaaacctt tattataacc actaaattct aaaataagtc ttgctctatc
    44641 aatatgtgga ttagtataat caggtattaa agtttgagtt acccaatcta aatttcttct
    44701 taaactcatc acaaattgac gcggatattt gcgaaatttc gaatgtacga tgatattagt
    44761 attatcaaac aaagtccaat aaaaatcaaa attttgcacc ttatcttcat agcctatttc
    44821 tttaatctgc acactagctc tctcatcttt tttaagtata aatttataag tataatcaaa
    44881 agttggttca gatgctaaaa cattactaaa aataaaaaaa atacaaatta aacaagggct
    44941 tattttaaac aattttagcc ttcgtgtcct aaaatttttg cgcccaattc tatataaata
    45001 tcattttgcc tttcttctat aaaatcacca ttttctaata tgaaattttt tacatccatt
    45061 tctgttagac cttgtttttc caaaagttcc accatggcaa tatgatcagc aaaaaattcc
    45121 tcaaaaactt tttctaaggc tcctaaattt ccattttgta taatttctat aaatttttct
    45181 ttt
//
LOCUS       DAZAND010000002        42482 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.002, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000002 DAZAND010000000
VERSION     DAZAND010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 42482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42482
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.002"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1977
                     /locus_tag="ACHDOB_000052"
     CDS             <1..1977
                     /locus_tag="ACHDOB_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HFN3325018.1"
                     /translation="DDLFFGWGRKKSGLKAMNLAKKYNTKFILLEDGFIRSLNLGVEN
                     SPSFSMVKDDIGIYYDATMPSKLENLLNTYEFKGEEIKQAKKAIELIKKYKISKYNNN
                     LDIPDDYFQKDEKRVLIIAQTANDASLEFGLAKDFKTVDMIKDAIKENPDSKIYIKIH
                     PDVLSGKKQSDLDINSLPKECILISENFNPIALLEFFDKVYTKTSGMGFEALIQECEC
                     VCYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYSEYFNPYLNQKSNIFDTI
                     QTLAKYKSIEKANSNRLFMLGFTLWKRYFIKPFFKAKNNEIIFLNSIKSLARYKLKED
                     DKFFIWGKKYDENTLKNLLLVKAKEQNLTSFTPKVSLVEDGFIRSISLGSDLTRPFSL
                     IVDDKGLYIDPNKVSKLEELLQNEIFDKNMLNRAKNIIKTLLENRFSKYNGLKHEDLK
                     INAKIGQKVILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSG
                     NRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMP
                     FYAGWGLTKDKYRCERRTRKLSLEELVAGALITYPRYINPKTKTLCEIEVCLDIMLNL
                     QKAYFSKKYIKLAIDFKTFILRKIRRFYEFLAKK"
     gene            1974..3158
                     /gene="kpsS"
                     /locus_tag="ACHDOB_000053"
     CDS             1974..3158
                     /gene="kpsS"
                     /locus_tag="ACHDOB_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HFN3325019.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHLLAIKMKKKQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKE
                     LGVEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPILACNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            3230..4351
                     /locus_tag="ACHDOB_000054"
     CDS             3230..4351
                     /locus_tag="ACHDOB_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HFN3325020.1"
                     /translation="MNREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIEADLSKIE
                     KNEQFPFFKISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKIGTMQERIKLFANVIVEKLKQNESKQDYE
                     LILVAHSVGTIVCIEVLEYILRQHLDLSLLCKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSKFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            4348..5709
                     /locus_tag="ACHDOB_000055"
     CDS             4348..5709
                     /locus_tag="ACHDOB_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HFN3325021.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEGKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRTKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            5706..6125
                     /locus_tag="ACHDOB_000056"
     CDS             5706..6125
                     /locus_tag="ACHDOB_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325022.1"
                     /translation="MKRVRVKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(6126..6473)
                     /gene="acpS"
                     /locus_tag="ACHDOB_000057"
     CDS             complement(6126..6473)
                     /gene="acpS"
                     /locus_tag="ACHDOB_000057"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HFN3325023.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAIV"
     gene            complement(6473..7009)
                     /gene="fliL"
                     /locus_tag="ACHDOB_000058"
     CDS             complement(6473..7009)
                     /gene="fliL"
                     /locus_tag="ACHDOB_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HFN3325024.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            7112..8502
                     /gene="pgmL"
                     /locus_tag="ACHDOB_000059"
                     /pseudo
     CDS             7112..8502
                     /gene="pgmL"
                     /locus_tag="ACHDOB_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344790.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
     gene            8550..8927
                     /locus_tag="ACHDOB_000060"
     CDS             8550..8927
                     /locus_tag="ACHDOB_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HFN3325025.1"
                     /translation="MKKILVLLLLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(8958..9284)
                     /gene="rsfS"
                     /locus_tag="ACHDOB_000061"
     CDS             complement(8958..9284)
                     /gene="rsfS"
                     /locus_tag="ACHDOB_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HFN3325026.1"
                     /translation="MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(9312..9857)
                     /gene="nadD"
                     /locus_tag="ACHDOB_000062"
     CDS             complement(9312..9857)
                     /gene="nadD"
                     /locus_tag="ACHDOB_000062"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_function: GO:0004515 - nicotinate-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HFN3325027.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFK
                     QNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNI
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            9917..10915
                     /gene="gap"
                     /locus_tag="ACHDOB_000063"
     CDS             9917..10915
                     /gene="gap"
                     /locus_tag="ACHDOB_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HFN3325028.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDE
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            10918..12120
                     /gene="pgk"
                     /locus_tag="ACHDOB_000064"
     CDS             10918..12120
                     /gene="pgk"
                     /locus_tag="ACHDOB_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HFN3325029.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            12117..12788
                     /locus_tag="ACHDOB_000065"
     CDS             12117..12788
                     /locus_tag="ACHDOB_000065"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HFN3325030.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVVFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEVIDLNYEKLIIAYEPIYSIGTGV
                     SAQATDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            12792..13616
                     /gene="fabI"
                     /locus_tag="ACHDOB_000066"
     CDS             12792..13616
                     /gene="fabI"
                     /locus_tag="ACHDOB_000066"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004318 - enoyl-[acyl-carrier-protein]
                     reductase (NADH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HFN3325031.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEVHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            13620..15113
                     /locus_tag="ACHDOB_000067"
     CDS             13620..15113
                     /locus_tag="ACHDOB_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HFN3325032.1"
                     /translation="MTKLSNEELKNILEGRIKKLENSILKEDKIVNEESVKILAKHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKVGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQ
                     NFDENPMLSKDFWKYLEISFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS"
     gene            complement(15110..16951)
                     /gene="feoB"
                     /locus_tag="ACHDOB_000068"
     CDS             complement(15110..16951)
                     /gene="feoB"
                     /locus_tag="ACHDOB_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HFN3325033.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSVLSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLYIAKILLN"
     gene            complement(16948..17172)
                     /locus_tag="ACHDOB_000069"
     CDS             complement(16948..17172)
                     /locus_tag="ACHDOB_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HFN3325034.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            complement(17254..18594)
                     /locus_tag="ACHDOB_000070"
     CDS             complement(17254..18594)
                     /locus_tag="ACHDOB_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HFN3325035.1"
                     /translation="MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKE
                     ECVLNAFKAFENLSTDKNTPIWVNDQKLVPIYAAMLDGIASHALDFDDTHTEAILHAS
                     AILTPLCLSYGFHVNKDAKKIIKAFIVGWEIAARVGIASKGTFHKRGFHTTAIAGIFG
                     SVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIMVAHF
                     AKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELGKALGEIWQTMQVSIKPYPSCHFAH
                     GLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLM
                     ALGFFDGKITLDSYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRIIQ
                     KDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF"
     gene            complement(18603..19970)
                     /gene="purB"
                     /locus_tag="ACHDOB_000071"
     CDS             complement(18603..19970)
                     /gene="purB"
                     /locus_tag="ACHDOB_000071"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HFN3325036.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQPARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTISNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            complement(19980..21143)
                     /locus_tag="ACHDOB_000072"
     CDS             complement(19980..21143)
                     /locus_tag="ACHDOB_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HFN3325037.1"
                     /translation="MNSKTKLIHCGRGDQGAEVRSVNPTLMRASTILFKDHATWQKYR
                     ELRKTDRVLSYGARGTTTNFELEKLICTLEGGYRAQLFPTGLAALAMVLLNYASKDAH
                     FLITDAIYGPVRTICELFLDKMGVEIDFLKADASDVEEKIKPNTKLILCESPGSILYE
                     VIDLPKLCKIAHAHNIPVAIDNTYSSGYFLNPLELGVDISVIAATKYLSGHSDVTMGI
                     VVINEKEWKNFDKLPEALGFTTSPDDAYLVLRGMRTLDVRMKAHEKSADEIVEFLQSR
                     KEIKTIFYPKLKSHPNHEIFMRDHKGANGMITIEFTEGYSKDDAIKFVDKLEYFSIGA
                     SWGGYESLATVTTPPRTATDWSARGPFVRFHIGLEDTKDLIADLTQAFDSIKK"
     gene            complement(21156..22595)
                     /gene="dcuC"
                     /locus_tag="ACHDOB_000073"
     CDS             complement(21156..22595)
                     /gene="dcuC"
                     /locus_tag="ACHDOB_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
                     /protein_id="HFN3325038.1"
                     /translation="MLGIVFSLFSVFLLVFMLYKKINAHMALLLSGLLLLSLAALFGL
                     SPHIVTKGSLNLGFFDIFQVFNQTMSSTLAGLGLTLMTIAGFSAYMDHVGASYALFKV
                     FEKPLKAVKSPYVLLIVAYFIVQFLVLFIPSHAGLALLLMVTMYPILVRSGVSKLSAL
                     SVIAICQYIDHGPGSGNVIMASKVAEVDPAIYFVHYQLPTTLPIIIAVGIAIYLCNKF
                     FDKKDNFVFNAQEIEKELNENEGKEKELKKPPRIYAILPIIPLVLILGFSSVLDSILV
                     LMGISSAEEVKAVASTAIKMNVPVAMVISTFVAIIFEMIRYKSIVETLNSIMIFFKGM
                     GHLFVITVSLIVCGQVFASGLLSVGFVDTLIEFCKNAGFGVLAIIIAVSILLAVCAFL
                     MGSGNAAFFSFAPLIPNIAKHFGVETITMIAPIQIMTGFGRCVSPIAPAILAISAIAK
                     VSPFAVVKRTAIPMLVAAIVNVIMTYIYL"
     gene            complement(22599..22961)
                     /locus_tag="ACHDOB_000074"
     CDS             complement(22599..22961)
                     /locus_tag="ACHDOB_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFN3325039.1"
                     /translation="MSNYPKAIGPYSAYREANGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            23129..23785
                     /locus_tag="ACHDOB_000075"
     CDS             23129..23785
                     /locus_tag="ACHDOB_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HFN3325040.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANN
                     HISGRSLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSNYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK
                     "
     gene            complement(23786..24256)
                     /locus_tag="ACHDOB_000076"
     CDS             complement(23786..24256)
                     /locus_tag="ACHDOB_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HFN3325041.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNANLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKTSLKILKFIKKF"
     gene            complement(24313..25737)
                     /locus_tag="ACHDOB_000077"
     CDS             complement(24313..25737)
                     /locus_tag="ACHDOB_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HFN3325042.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
     gene            25908..26222
                     /locus_tag="ACHDOB_000078"
     CDS             25908..26222
                     /locus_tag="ACHDOB_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HFN3325043.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            26225..26920
                     /locus_tag="ACHDOB_000079"
     CDS             26225..26920
                     /locus_tag="ACHDOB_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325044.1"
                     /translation="MLFGFDDKREFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     LYAKNTKSLKMIFGNFLHNIMHVSFGKIQNINIKLNTYAFYFQKRKSLIFNTKISKNI
                     DLLRLLRIYLYGICFDAQILFSSYVYDKVSFQNNGKNIDQDGDLIIIDKKFAILPLCK
                     EINAHNLKIENEIHGLLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTMLKL
                     VPYKISNQIIRRK"
     gene            26920..27411
                     /gene="fldA"
                     /locus_tag="ACHDOB_000080"
     CDS             26920..27411
                     /gene="fldA"
                     /locus_tag="ACHDOB_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HFN3325045.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWVEQIKP
                     YFA"
     gene            complement(27456..27986)
                     /locus_tag="ACHDOB_000081"
     CDS             complement(27456..27986)
                     /locus_tag="ACHDOB_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325046.1"
                     /translation="MSKITLILSFFIALFMSACTNATFIQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLRTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(27992..28702)
                     /locus_tag="ACHDOB_000082"
     CDS             complement(27992..28702)
                     /locus_tag="ACHDOB_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin fold domain-containing protein"
                     /protein_id="HFN3325047.1"
                     /translation="MKKLSLILACSASLFAASSSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDDELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDTELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            complement(28751..30556)
                     /gene="selB"
                     /locus_tag="ACHDOB_000083"
     CDS             complement(28751..30556)
                     /gene="selB"
                     /locus_tag="ACHDOB_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HFN3325048.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSICLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENNEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKKMSNLLDFQNGIYFKKGIDFEKLQEKNNNQMYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVNKEAEKRFLTNI"
     gene            complement(30553..31875)
                     /gene="selA"
                     /locus_tag="ACHDOB_000084"
     CDS             complement(30553..31875)
                     /gene="selA"
                     /locus_tag="ACHDOB_000084"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004125 - L-seryl-tRNA(Sec) selenium
                     transferase activity [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HFN3325049.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYNKEIIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEKKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILIINQMENL"
     gene            31953..33626
                     /locus_tag="ACHDOB_000085"
     CDS             31953..33626
                     /locus_tag="ACHDOB_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN3325050.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEVLVCNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYKARASVYDLGLDLEQSKEVQNRLILADSDTQTV
                     EFLKEHGFKVIALSSVEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSAVRK
                     DFTRQSGCYNLLNFENLEVLLEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLALLQNSGANLVFYTDFVS
                     RGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFACIECGKE
                     FATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN"
     gene            complement(33629..34930)
                     /locus_tag="ACHDOB_000086"
     CDS             complement(33629..34930)
                     /locus_tag="ACHDOB_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3325051.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIVFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDALNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     SFSTFSENLGVVDIYKNSKNLVVKFDSKLINKEELEGKIKI"
     gene            35097..35699
                     /gene="rdgB"
                     /locus_tag="ACHDOB_000087"
     CDS             35097..35699
                     /gene="rdgB"
                     /locus_tag="ACHDOB_000087"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035870 - dITP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0036222 - XTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HFN3325052.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSDKGDDKSNR
                     DKLVNEMIKKGFNQSRAHYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            complement(35730..38201)
                     /locus_tag="ACHDOB_000088"
     CDS             complement(35730..38201)
                     /locus_tag="ACHDOB_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HFN3325053.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKAQNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNNLIEKRDLASDEKEKDQIRLAIKEHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLILSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYGISVLAIILALIGIL
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSDTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGENINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMVSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQYKEHILKQ"
     gene            complement(38201..38770)
                     /locus_tag="ACHDOB_000089"
     CDS             complement(38201..38770)
                     /locus_tag="ACHDOB_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HFN3325054.1"
                     /translation="MKKIFLILTLFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAANGIFKLFDSIIDYKLMAKLSLSKNYSKLTPKEQEKFTTAFETSLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSTVVDGEEKNIIFKFYNDNNNWLIYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            complement(38780..39478)
                     /locus_tag="ACHDOB_000090"
     CDS             complement(38780..39478)
                     /locus_tag="ACHDOB_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HFN3325055.1"
                     /translation="MRIKFISFILIFFTIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNAITPEFIRLGARNFFDNLLAPLRFVGNVLQFKFEE
                     AGEEFKRFAANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLTLPATWYTSFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            complement(39523..39966)
                     /locus_tag="ACHDOB_000091"
     CDS             complement(39523..39966)
                     /locus_tag="ACHDOB_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HFN3325056.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKKDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDDTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKIATIFYKKTALLKPDFKVKEATEWVDFYWDINLD"
     gene            complement(39980..41299)
                     /locus_tag="ACHDOB_000092"
     CDS             complement(39980..41299)
                     /locus_tag="ACHDOB_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HFN3325057.1"
                     /translation="MDFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFIFGVLVSSIIAWIFHLDNASFPVQIF
                     SLPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            complement(41309..42373)
                     /gene="mqnE"
                     /locus_tag="ACHDOB_000093"
     CDS             complement(41309..42373)
                     /gene="mqnE"
                     /locus_tag="ACHDOB_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HFN3325058.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKGKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDNSFIQTDKIMDSEEILKTIAIARLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
BASE COUNT        14592 a         6175 c         6864 g        14851 t
ORIGIN      
        1 gatgatcttt tctttggctg gggacgtaaa aaatcaggtt taaaagctat gaatttagct
       61 aaaaaatata atactaaatt catactttta gaagatggat ttatccgctc attaaactta
      121 ggggttgaaa atagcccaag tttttctatg gttaaagatg atataggcat ttattatgat
      181 gcaacaatgc cttcaaaact tgaaaatctt ttaaatactt atgaatttaa aggtgaagaa
      241 atcaagcaag ctaaaaaagc tatagagctt atcaaaaaat ataaaattag caagtataat
      301 aacaatcttg atatcccaga tgattatttt caaaaagatg aaaaacgtgt tttaattatt
      361 gctcaaacgg ccaatgatgc ctctcttgaa tttgggcttg ctaaagattt taaaactgtc
      421 gatatgataa aagatgccat aaaagaaaat cctgattcta aaatttatat aaaaatccat
      481 cctgatgttt taagtggtaa aaaacaaagt gatttagata taaattcctt acctaaagaa
      541 tgtattttaa tcagtgaaaa ttttaatccc atagccttgc ttgagttttt tgataaggtt
      601 tatactaaaa cttctggtat gggttttgaa gctttgatac aagaatgcga gtgtgtttgt
      661 tatggcatgc cattttatgc aggttggggt ctaacaaaag ataaattaga gtgtaaaaga
      721 aggatgcaaa aaagaagttt agaagaagtt ttctatgctg cttatatact ttatagcgag
      781 tattttaatc cttatttaaa tcaaaaaagt aatatttttg atactattca aactttagca
      841 aaatataaaa gcatagaaaa ggcaaattct aatagacttt ttatgctagg ctttacctta
      901 tggaaaaggt attttatcaa gccttttttt aaggctaaaa ataatgaaat tattttttta
      961 aattctatta aatctttagc tagatacaag cttaaagaag atgataaatt ctttatttgg
     1021 ggtaaaaaat atgatgaaaa tactcttaaa aatttgcttt tagtaaaggc aaaagagcaa
     1081 aatttaacta gttttacccc taaagtttct ttagtggaag atggttttat ccgctcaatt
     1141 tcactaggtt ctgatcttac gcgccctttt tctttaatcg ttgatgataa aggactttac
     1201 atagatccaa ataaagtaag caaattagaa gaacttttgc aaaatgaaat ttttgataaa
     1261 aatatgctaa atagggcaaa aaatattata aaaaccttac ttgagaaccg cttttcaaaa
     1321 tataatggtt taaagcatga agacttaaaa atcaatgcca aaataggaca aaaggttatt
     1381 ttaatccccg ctcaagttga agatgatgct tcgatgattt taggaggttt tggcttatct
     1441 actcttgatt tgcttaagga ggtacgttct aaaaatcaag atgcttatat catctttaaa
     1501 ccccatcctg atgtgttaag cggcaaccgt gtaggtttaa aagatgaaac actcatcttg
     1561 gaattttgtg atgagattgt aaaagattgc agtattgata gtgctataaa aattgctgat
     1621 gaaattcaca ctattacttc tacaagtggt tttgatgctc ttttaagagc taaaaaagtt
     1681 tttacttatg gcatgccttt ttatgcgggc tggggtttaa caaaagataa atatagatgc
     1741 gaaagaagaa caagaaaact aagcctagaa gagcttgtag caggtgcttt gatcacatat
     1801 ccaagatata taaatcctaa aacaaaaact ttatgtgaaa ttgaagtttg tttagatata
     1861 atgctaaatt tacaaaaagc ttatttttca aaaaaatata taaaattggc aatagatttt
     1921 aaaactttta tacttagaaa aataagaaga ttttatgaat ttttagcaaa gaaatgagat
     1981 ttagcactaa aattaaaaaa gaatttagcg gtaaaaatgt tttactcttg caaggacctg
     2041 tgggaaattt ttttcacctt cttgcaataa aaatgaaaaa aaaacaaacc aaagttttta
     2101 aactcaattt taacggtgga gatttttttt tctatcctag tggaacgagg tgtaagtgcg
     2161 atgaaaaaga tcttgaaaat ttctatagag atttttttca aagcaaaaaa atcgatgcta
     2221 ttttaatgta taatgattgt cgtattatcc atgctaaggc tattaaagtg gctaaagaat
     2281 taggagttga aatatggatt tttgaagaag gatatttaag gccttattgt attactttgg
     2341 aaaaagatgg ggtgaatgca aattcttctt taccgcgtga taaaaatttt tatctttctc
     2401 aaaatatttt taccaaagaa agcataaaag aaattccagg tggatttaaa tttatggctt
     2461 ttgatgcctt tttgtattgg ttgtttgctt ttattttggc cccatttttt aacaacaaac
     2521 ttcatcatcg cactttatat ccttttgaat ttttattttg gtttagatct ttatacagaa
     2581 aatatcttta caagattaca gaaaaaaaac taaatgaaaa gatttataat ttagaaaaaa
     2641 agtacttttt ggcgatttta caagtttata gcgatacgca aattaaatat cattacaaaa
     2701 aaagcataga gcactttata gaggaaacca tactttcttt tgcaaaccat gcaagagcta
     2761 aatcttatct agtttttaaa caccatccca tggatagggg ttataagaat tattctaaac
     2821 tcataaatga tttaagtcaa aaatatcatg tagaaggaag ggttttatat gttcatgata
     2881 cccacttgcc agttctttta agaaaggctt taggttgtat tactataaat tcaacagtag
     2941 gccttagtgc tattttagaa ggctgtccga ctaaggtttg tggcaatgct ttttatgatt
     3001 ttgaaggctt atcttatcca aagaagcttc aatttttttg gcgtgaagct catgcttata
     3061 aacccaatcc tattttggca tgtaatttta agaaatacct tttacaaact aatcaattca
     3121 acggcaattt ttacaaaaat ttctttttag acaaataaga ctaaaaagct ttgattaaga
     3181 gagcttttaa agcaaagttg ttataattaa aagtaaaaag aaatattgta tgaataggga
     3241 agtattttat atagcaggat atgatcctaa aagttataga ttttattatg atttatttaa
     3301 aaaaaaccta aaagattatt ctcatgcttt taacattgaa gctgatttaa gtaaaattga
     3361 aaaaaatgag caatttcctt tttttaaaat ttcttgcgag ggagtgcaaa ctaaatatca
     3421 ttttttaaca tggaatgata ttgttaagaa aaattggtca gaaaattata aagatgcctt
     3481 agcagattgt tatagttttt ttagaattta tactatcaca gggcttttta tcaaatttgg
     3541 caaagagtcg atttatcaac ttatcacagg ttattatcct tttttttatg tgttattttc
     3601 tttactattt tctttggttt tagcttttgg aagttttgct tttttgcaaa attatatgca
     3661 tttttcttta gctatcatca taggatgttt tttaggattt ttactaaatc attttttatt
     3721 taaattgggt aagaaattag ctgtattttg gatagcaaga atttgtgctt tttgtgctac
     3781 ttggcaagat aaaaaaatag gtactatgca agaaagaatc aaactttttg caaatgttat
     3841 agtggagaag ctaaaacaaa acgaaagcaa acaagattat gagcttattt tagtagcgca
     3901 tagtgttgga actatagttt gtatagaagt tttggagtat attttaagac aacatttaga
     3961 tttatctttg ctttgtaaat taaaaattct tactttagga gaatgcatac ctttagtgag
     4021 ttatcaaaaa aaagcagatg aatttagaaa gaagcttgaa tttgtttcaa agtttgattt
     4081 aaaatggtat gattacacat cgattattga tggagcatgt tttcctcaag tggatttttt
     4141 ccgcacgagt ggtgtaaatg ctaaatttac acccccattt ttaagtgcta aatttcacac
     4201 tttatatgaa aaacatgagt ataaaaaaat aaaaagagat aaaaacaaag cgcacttttt
     4261 atatctttat agtattagtg ttaaaggtga ttatgatttt ttttctttca tcataatgcc
     4321 taaattttta gaagaaaagg taaaaatatg agtgaatgtc ccttttttcc aaaaccttat
     4381 aaaaacaagg cttctacact tttaactttt ttgctaaagc gtagatcttg gcttgatggc
     4441 ctttatgagc gtagttataa aatgcaaaca ggctatgtga agatgccaaa ttttgatctt
     4501 tatgttataa atgacactaa agaagttaaa agaatgatgg ttgatgaggt tagagaattt
     4561 cctaaaagtg catttttgca tgagctttta agtccgcttt taggagagag catttttact
     4621 acaaatggtg aagtttggaa aaaacaaaga gaacttttgc gtccaagttt tgaaatgact
     4681 cgtatcaata aagtgtttaa tcttatgagt gaagctgtgg cagatatgat ggatcgtttt
     4741 agcaagtatc caaatcatgc tgttatcgaa gtagatgaag ctatgacttt tattaccgct
     4801 gatgtgattt ttcgcaccat tatgtcttca aaactcgatg agggaaaagg taaaaaaatc
     4861 ttaaacgcct ttgtgacttt tcaagagcaa agcgtgcata cagccatgcg tcgtatgttt
     4921 cgttttccaa aatggctttc ttatgtatta ggagatcgta agcgtactaa ggccggagat
     4981 gtgattaggc aggttttaag tgacatcata aaaccaagat atgatatggc agataatgca
     5041 gaatttgaag atattttagg atctttgctt ttagtagtgg atgcggatac gaataagcgt
     5101 ttttcttttg aggaaatttt agatcaagtg gctatgcttt ttttagcagg acatgaaacc
     5161 acagcaagtt ctttgacttg gacgctttat ttgcttagtc tttatcctaa ggagcaagaa
     5221 aaagcttatg aggagattac tcaggtttta cagggtggag ctattgaaat ttcgcatcta
     5281 agacagttta aatacttaac aaatattttt aaagaatctt taaggcttta tcctcctgtt
     5341 ggattttttg caagagaggc aaaaaaagat acccaagtta gagataagct tataaaaaaa
     5401 ggttctgggg tggtgattgc tccttggttg atacacagac atgaagaatt ttggacaaat
     5461 ccgcatggat ttaatccttc tcgttttgaa ggagaataca aaaaagatgc ttatttgcct
     5521 tttggggtag gggagagaat ttgtatagga caaggttttg ctatgcaaga agcgattttg
     5581 attttggcta atattttaaa aacttacaaa ctagaacttg aagaaggttt tgtacctgat
     5641 gtagtagggc gtttaacagt gcgttcggct aatggtatga ggataaaatt tagcaaaaga
     5701 aagctatgaa aagagttaga gttaaaattc gcgccaattt tcgtcgtcgt gtaaaacgca
     5761 ccttaaaagg aagcttaaaa gaaaaattag cagggactat cctgctttgt gcgatagtac
     5821 ctttagcagt tttaggatat ctttttatcg tgattatagg aacttttttt aataccgcgc
     5881 gagcaagaca gggtgttaga gctttagatc attttgtaaa tgcaagcttg tttaatggct
     5941 atgcttggga gagcgtttct tctcatgcgt ggcgtgaaag aaatcgcaaa aaatgggcaa
     6001 ggattgttat aaaaatcaca gatttttttc aaaaagatca ttgtaaaaga gcaaataaaa
     6061 gagaacaacc tgtggtggat ttcatacttt caagaaattt agacaagcaa actataggaa
     6121 aataatcaaa ctatagccac tatggctata gcaaaaccat tatcatgaga aatgcttagg
     6181 gaagtttgag tgatattaaa atcttttgta attttttgag aatattttaa tttaggcgcg
     6241 tttttttcat cttttgatat ttcaatatca aaaaaactgc ataattcaca aattccaaca
     6301 cccaaagcct tgctagcggc ttctttagca gcccaaagac ctgctagagt tgctggattt
     6361 ttaatgagta tttgttcttt tgggcttaga aatttatcca aaaaattttt gccatgtcta
     6421 gaatgaattt tttctatcct agaaatggcg atgatatcac agcctacacg cattaagaaa
     6481 ctacaaaatc cgtaaaataa acatttttaa taaagccatc ggttaaaatt tcattgattt
     6541 ttccaactag ctcatctttt aaacgttctt tgcctttttg tgtacttact tcttcaaaag
     6601 ttttagctgt taatgtacga ataataatat cacgaatcac tgggactttt ttatcaagtt
     6661 caggttttaa aagttcgcta ttttgttcta attctatagt gcattttaca tatcttgagc
     6721 cactatcgct aagtaaattt agggtaaaag gatcaagtgg atacatagga cctatattag
     6781 caaaatcact acctcgttga gtaggggctg aaaccttagg tttatcggct tttgcctctt
     6841 cttttggagc ttctttgact tcactttcat cacttgaact gcttgaaata agccaagcaa
     6901 tcactcccat aatactaaga agtaaaacaa aaagtaaaat aacaataata attacaagtg
     6961 aaccgccttt tttctttttc gtttcttcgt tttctaattc ttcatccata aattttcctt
     7021 catttagtga aattaatgta aaattgtagc aaaaatttct tttctatcca aatttgcttt
     7081 agaaaaacga taaatttagg tcaaagaaga gatgaatttg aaggaaaaaa aatgttagat
     7141 gtgattttta gagaatatga tataagagga ctttatggca aagaactgaa tgaaaaaagt
     7201 gttaaggcta taggtttttg cttgggacaa accatgctaa ataaaggctg taaaaatgta
     7261 agtgtgggct atgatgcaag atatagtgca aatgaacttt ttaattatct agtgagtgga
     7321 cttaacaaag cgggaataaa aatctatgat atagggcttg taccaactcc attgggatat
     7381 tttagtcttt atgagggctt gaaatttgat gcaaatgtta tgataacagg ctctcataac
     7441 ccaaaagatt ataatggttt taaaatcact atcaataaag aaagtttttt tggcgaggaa
     7501 ttaaaagagt tttcaaaaga agtttataag catttggatg atgagattga agaaaattta
     7561 gaagtagaaa aatacgatat tttaagcctt tatgtgaagt ttatgtgcga gcaatttagc
     7621 tttttaaagg attttaatta taaatttggt gttgattgca caaatggtgc ggctggagtg
     7681 gtgataaagc ctttaatcaa ggctttaaat ttaaaagctc atgtaatgtt tgcagagcct
     7741 gatggacagt ttccaaacca cgctccagat cctacagaag aagaaaactt aagtgcgatt
     7801 agagagtttt taaatcaaaa tcaagattat tctttagctt ttgcttttga tggggatgct
     7861 gatagaatgg ttgctttgag taaaactcat gtattttgtg gagatgagct ttgttatttg
     7921 tttgctaaaa atattcctaa tccacgcatt ttaggtgagg taaaatgttc taaaaatctt
     7981 tttgatgaag tggctaaatt tggaactatt tttatgggaa aaacaggaca ttctaatatc
     8041 aaaaaaatga tgaaagaaaa agatattgat ttagctgctg aagtgagtgg gcatattttc
     8101 tttaaacata gatattttgg ttatgatgat ggaatttacg catttttaag agccttagaa
     8161 cttgtttata aaggttttga tttagaaagt atgattaaag ctttaccaaa actctatact
     8221 acacctgaaa ttaaaattca tgtaaatgaa gaagaaaaat ttaaacttgt ggaagaattt
     8281 caaaaagaga ttgaaaaagg agctttaaaa ggtgttaaaa gtctttgtga aattgatgga
     8341 gctaggatag attttggcga tggatgggct ttgcttcgcg catctaacac cagcccttat
     8401 cttatcacac gctttgaagc aacttcttta gaaagagcaa aagagcttga aagtacggta
     8461 tttagtttat ttaatgagat aaaagctagg cttaagaatt gatgagataa tatttcgcga
     8521 tttaaattta ttttaaaaag gaattaaaaa tgaaaaaaat acttgttcta cttttgttat
     8581 gtgcgtttgc ttttggcgca agtgaatgtg atagaaaaat cgatcgtatc aataaagaaa
     8641 tcagtttttc taaagcgcat aatgatacag ctagaacctt aagcttagag cttgctttaa
     8701 aacaagtaca aaatgattgt gctaaagatc ctatgtttta tgataaaaag ttagaagcta
     8761 aaaaacttaa agaacaagaa gtagaaaaaa tcgaaaaaga acttgatgct ttaaaagaac
     8821 aaaaagatta tatgagtaag gctgagtata aagctaaaaa agaagcttta aaagaacaaa
     8881 aagagaaaat caaaaaagaa attaaagaat atattgataa tctctaaaaa ttaaaaggct
     8941 aattaaattt agccttttta aaccctacct tttttaagat tttctagtaa ttcttctata
     9001 ttataaattc ctctgtgttc tggtgttaaa agatggatta aaatatcacc aagatcaatc
     9061 acactccatt cttcgctact atctatgttt aaaaattcct cacctttggc tttaagttgt
     9121 gttttaagct catcgatcaa ggatagagcg tgtctttctc ctaaagtagc tgcgataatg
     9181 acatatttta caaagtattc ttgctcgctc atgtcaatgg ttttgatatc ttcagctttt
     9241 ttttcatcta aaattttaac gattaaatct attctttctt gcattctttt cctttaattt
     9301 ttgaaattgt atcaattttt ttgtaatttt tcataatatt tttttacttc atctttaatt
     9361 tcttcacaaa cttcatttat atttaaagtg ttgcgtatga aagaagatgc gattttttta
     9421 tcagttttta aatctttaaa atttttagga atttctatat cattgcgatt agcaataaca
     9481 aattctacta aagaatttaa tttttcaaaa tcatgccaaa gatgaagttt ctctaaatga
     9541 tctgcgccaa ttaaaagata aaatttgcta ggattataaa gcttataaag atatttaaca
     9601 ctttctatac taggaacagg gcgtttttgc ttggtttcaa aatcacaaat ttcaactttt
     9661 ggaaaatgtc cccaaagttt tttaacccat aagaatcttt gcttttcatc agcactaaag
     9721 ttttgtttaa aagggttgat ataagtaggc ataataataa gcttatcaat atctaatttt
     9781 tccaaagcct ctaaaacaac gctattgtgt ccattatgtg gtggatcaaa actgccacca
     9841 aaaagtgcta tcttcattaa aattttaacc ttttttttgt agaatattag cattatattt
     9901 tgcaaaagga aattaaatgg ctgtaaaagt tgctataaat ggttttggac gcataggcag
     9961 atgtgttgca agaatcatct tagaaagaaa tgatattgag cttgtggcga taaatgatac
    10021 tacggatatt gaacttacaa aatacctttt taaatacgat acagtacatg gtgaatttaa
    10081 aggcagtgtt gatagtgaag gcgatgattt agtggtaaat ggtaaaaaaa tcaaagtatt
    10141 taaaagtcgc aatgtaaaag atcttgactt tgcaaaacac ggcgcacaaa ttgttttaga
    10201 gtgcacagga gcgcatttaa ctatggcaaa atgtcaagaa tttatagata tgggagtaca
    10261 aaaagtgatc atgagtgctc ctgcaaaaga tgatactcct acttatgttt taggagtaaa
    10321 ttcagaactt tacaagggtg aaagcattat ttctaatgca agttgtacaa caaattgttt
    10381 aggtcctgtt tgtcgtgttt tacaagataa ttttggcata gaaaaaggac ttatgacaac
    10441 aatacatgct tatacaaatg gacaaagtat tattgatgct aaagctaaag ataaacgccg
    10501 ttctcgtgct gcagcgcaaa atatcattcc aacttctaca ggcgcagcaa aagctatgaa
    10561 acttgttatg cctgaactta atggcaagct tcatggacaa agtatgcgtg tgccagtgat
    10621 tgatgtatca agcgtggatt taactgcaca actaagccgt aaagtcagca aagatgaaat
    10681 caatgaagct tttagaaaag ctgcaactac aaatttaaaa ggcattttaa tggtagatga
    10741 tgaagaaaga gtttcaagcg attttatcac ttgttcttat ggagctattg tagcaagtga
    10801 tttaactcaa gtgattgcgg atgattttat caaggtaatt gcttggtatg ataatgaatg
    10861 gggctattca agtcgtctag tagatatggc agtatatatt gcaaataagg cttaatcatg
    10921 agtgatatta tttctataaa agacattgat ttagctaaga aaaaagtttt tataagatgt
    10981 gattttaatg ttcctcaaga tgatttttta aatatcactg atgatagacg cataagatca
    11041 gctattccta cgataagata ttgtttggat aatggctgta gtgtgatttt agcctctcat
    11101 ttagggcgtc caaaagaaat tagctctaaa tattctttag aacctgtggc taagcgtctt
    11161 gctagacttt tagataaaga aattattatg gcaaaagatg ttatcggcga agatgcaaaa
    11221 accaaagcta tgaatttaaa agcgggtgaa attttacttc ttgaaaattt gcgttttgaa
    11281 aaaggcgaaa ctaaaaatga tgaaaattta gccaaagaac ttgcttctat ggttcaagtt
    11341 tatatcaatg atgcttttgg agtatgccat agagcacatt ctagtgtaga ggcgattact
    11401 aaattttttg atgaaaaaca caaaggcgca ggatttttac tccaaaaaga aattgatttt
    11461 gcaagcaatc ttatcaaaca tccagcacgt ccttttgtcg ctgttgttgg aggttcaaag
    11521 gtaagtggaa aacttcaagc attgacaaat ttattaccaa aggtagataa attaatcata
    11581 ggcggaggta tggcatttac ttttttaaaa gctttaggtt atgatatagg aaattcactt
    11641 ttagaagaag aacttttaga agaagctaat aaaattctta ccaagggtaa aaatttagga
    11701 gtgaaaattt atcttccagt agacgttgta gccgctcctg cgtgctcaca agatgcgccg
    11761 atgaaatttg ttccagcgca agaaattcca aatggttgga tgggtttaga tataggacct
    11821 gcgagtgtga gactttttaa ggaggtgatt tctgatgcgc aaacgatttg gtggaatgga
    11881 cctatgggtg tttttgaaat tgataaattt tcaaaaggta gcattaaaat gagtcattat
    11941 atcagcgaag gacatgcaac ttctgttgtt ggaggcggtg atacggctga tgtggttgcg
    12001 cgtgcaggtg atgcagatga aatgactttt atttccactg gaggtggtgc ttctcttgaa
    12061 cttatagagg gtaaagaact tccaggtgta aaagctttaa gatctaagga aaatgaatga
    12121 tctttgctgc aaatttaaaa tgcaatcaca caagggcaag ctttaaaatt tatgctgaaa
    12181 ttttaaataa aactatgggg gcaaaatgcg atgatattat cgttttccca cctagcgtag
    12241 tatttttaga aaatgaaaat aacttcatac aaggagcgca aaatttttat ccttgtgtta
    12301 atggagcttt tacaggcgag cttggaaaag aacatttgga cgaatttggg atcaaatgtg
    12361 ttttaatcgg gcattctgaa agaagagctt taggagatga agaatttatt aaggctaaat
    12421 ttgattttgc taaagagcat ggttataaaa ttgttttttg tataggtgaa aatttagata
    12481 caaaaaattc aggcaagact ttagagtttt taaaaaaaca acttgaagtt attgatttaa
    12541 attatgaaaa actcatcatc gcttatgagc ctatttattc tataggaacg ggagtgagtg
    12601 cacaagctac agatattgct aaagtgcttg aatttttagc gagtttaacc aaagcacctt
    12661 tgctttatgg tggaagtgtg aatgaaaata atattaaaga aattttaagt gtaaatcatt
    12721 gtggtggagt tttgataggc tctgcagctt taaaagtaga aaattttata aaattaatca
    12781 aaggataaaa gatgattatg aagggtaaaa aaggtcttat tgtaggggtt gcaaataata
    12841 aatctatcgc ttatggcata gcaaaagcat gttttgatca aggagccgag cttgctttta
    12901 cttttttaaa tgatgcttta aaaaaacgcg tagaacctat agcacaagag tttaattcta
    12961 attttgttta cgagcttgat gtaaacaata atgagcattt agattctatc gctgaaaaaa
    13021 tcaaaaaaga tttaggtgag attgattttg tggtacatgc ggttgctttt gctccaaaag
    13081 aggctttaga aaattctttt ttagaaactt caaaagaagc ttttgatata gctatgcaaa
    13141 cttctgtgta ttctttactt tctttaacac gtgcggtttt acctatttta aaagataagg
    13201 gttcgatttt gactttaagt tatcttggtg gggttaaata tgtgcctcat tataatgtta
    13261 tgggtgtagc aaaagctgca cttgaaagtt ctgtgcgtta tttagcaaga gatttagggg
    13321 taaaaggaat tcgtgttaat gctatttcag caggtcctat taaaacttta gcagcaagtg
    13381 gaataggaga ttttagaatg attttaaaat acaatgaaat caattctcct ttaaaacgca
    13441 atgtgagtat agaagatgta ggaaattcgg ctatgtattt acttagcgat ttggcaaatg
    13501 gtgttacagg tgaagtacat tatgtcgatg caggatataa catcatgggt atgggtgatg
    13561 ttgaaaaaaa tgaagaaggg caaactgttc tttgttggga taatcaaaaa ggataaaaaa
    13621 tgacaaagct tagcaatgaa gaattaaaaa atatacttga aggtcgcatt aaaaaacttg
    13681 aaaattccat tttaaaagag gataagattg tcaatgaaga aagtgtaaaa attcttgcta
    13741 agcatttatc tttaggcaat gaaattccag ctcttgctca aagatttttt caaatcgcac
    13801 ctaaaacaaa gttagtatgg cttcatcttt gtgaatgtac agggtgtagt gagagtttgt
    13861 tgcgttctga gttgccaagt tttgatgagc ttatttttga ttttttttct ttagaatatc
    13921 atgaaacttt aatggcagca aatggcacta aagctgaaga gcttttagag catgttttag
    13981 aagaagattt tattttagcg gttgaaggtg gtgttgcagc cattgatacc ttttttctta
    14041 ctataggagc acaaggagag agtggctatg aaattttaga aaaactagcc gctaaagcca
    14101 aggctatctt tgcagtgggt acttgttcaa gttatggtgg tattcaggct gcttatccaa
    14161 atcctagtaa aacttgtggt attagtgaag ttttaagtca gaaagtagta aatatcccag
    14221 gttgtcctcc aagtgatata aatatcattg cgactttaag tttttttgct ttatttggag
    14281 ttttacctga acttgatgag caaaatcgtc ctgtttgggc ttatggtaaa tgcctgcatg
    14341 atatgtgtga aagaaaggca aaatttgaaa gtgggatttt tgctgaacat tttgacgatg
    14401 aggctgcaaa gaatggagct tgtttattta aggtaggttg taaaggacct tatacttaca
    14461 ataactgtcc taaagtgaaa tttaatgcta aaacttcttg gccagtggcc gcaggacatg
    14521 gttgtatagc ctgtagtgag aaaaattttt gggatgagtt tgggaattat gaaaagccta
    14581 tggcaaatat tttttcttac gctaaacttt gtaatgaaga gttaaaacaa gaattttttc
    14641 tagaagagca aattaaaatt ttagaacaaa tagattttga atttgaaagc aatataaaac
    14701 ttattttaca aaatatagct aaaaataaat taggcgcttt gcttgtagaa aattataaaa
    14761 aatcctttga aaaaaactat gcttttatag aacaaaattt tgatgaaaat cctatgcttt
    14821 caaaagattt ttggaaatat cttgagataa gctttatttt ggttaaaggc gcatttttaa
    14881 aagataagaa tgatttttta attgcggcaa aaaattatgc ttttaaacat gcaagtcctt
    14941 atgattttaa gttaaatatg aacgctgaaa aaccaaagct tgatgtgagc aaatcttttc
    15001 gtatgacttt aatctatctt tgcggcggac ttgattttga aggtgttgct tatagcattt
    15061 taaaagcttt tgaagataat atcgctaaaa tttcatcatt aaaagcaagt tagtttaata
    15121 aaattttagc gatataaagt cctataaaag ctactatata agcacttgtg caggtaaaaa
    15181 gaaagagaaa gagagtgtat tttagctttc cactttcttt tgaaaaaact atagttgctg
    15241 caaagcaggg attataaatc attacaaata aaataaaagc cactgcactt ggtatgggta
    15301 tatttttagc gataattcct tttaaatcat tatttgtttc atctacatct tttcctagtg
    15361 aataaagcac gcccatagtt gagatcatca cttctttagc agccaaacca ctgattaaag
    15421 atacgcttaa tttccaatct aactcaaggg gtttaaaaat aggttctatg cctttgccaa
    15481 attgtcctaa ataactttgt tctatagctc tttcttgagc attaaaatca tttaaatttt
    15541 cttcactttt tggaaaattg ctagcaaacc atatgagcaa agaggccaaa agtatgaaag
    15601 ttcctgcttt tttaagatac attttggctt tattataaac cataaaccaa actaaatgcc
    15661 aatttggcat acgatatttt ggcatttcca taacaaaagg ttcatcaagt ccacgaaatg
    15721 ctgtcattct taaaaatttt gcagcacaaa gtcctaaaat cgcacctaaa atataaattc
    15781 caaaaagata atttcctgct ttttcacttg gaaaaaaagc accgataaaa agcacatata
    15841 caggaagtct tgccccgcaa ctcataaaat tgatcacaaa aagagttaaa agtctatctc
    15901 ttttgttctt aagagtgcgt gtagccataa aagcaggtac tgaacaacca aaaccagtga
    15961 ttagtggaat aaaactttta ccatgcaaac caaatttatg taaaatccca tcaagtaaaa
    16021 aagctactct tgacatatag cctgtggttt ctaaaagagc tatgcctaaa aataaaatca
    16081 ttatattagg caaaaaaagt atcacagcac caacacctgc gataatccca tcagccaaag
    16141 ctgaagcgat aaaggtatta gaaatattgt ttttaacaaa ttcacctaag gtattaaagc
    16201 ccgattctat ataatccata ggaatttgcc ctaagctaaa ggtgagttga aataaaagcc
    16261 acattaaaaa taaaaatata ggtaagccaa agaatttatg gataagcaag gcatcgattt
    16321 ttttggttaa atttctttct tcttttttgt gtgtaataat tttttttgaa agttcattaa
    16381 taaaatataa taaatcttct ttttctggac ttttttcgca aagcggagtg taaaattggg
    16441 atcttggaat aaatttactt tcaaataaaa taataatttt ttgcagcaaa agttctaaat
    16501 tttcttttgt ttttgctgaa atttcaacaa cttgactttg aaattcttgg cttaaaacag
    16561 aagtgtcaag ctctatacct tcttttttgg cttcatcaca catatttaaa gctaaaagca
    16621 tttttttatt aaggcttaaa agttctgcac taaggataag attacgttct aaattggtag
    16681 catctaaaac attaacaata acatcatagt cattttgatt taaaaaatga cgtgtgattt
    16741 tttcttcttc gctatatcca tctaaagaat aagttcctgg caaatcaatg acttcaaatt
    16801 catagttttt ataaaaagtt tttgcgcttg ctttttctat agtaactccg ctaaaatttc
    16861 ctactttcat attggctttg caaagcgcat taataagaag acttttgcct acattaggct
    16921 gacctacaag ggctattttg atttttttca tataagattc acttctatgg ttttagcttc
    16981 atcagatctt aggataacac aacttgtatc aagttctacc attatggtgg cattttttaa
    17041 agaggagtga atttttttca agtttttatt tttaataaat ccaaagctta aaagtctatt
    17101 tttgagttct ttgtgagcgt ttaaattgac aataatagct ttttgtccat cttttaactc
    17161 gtttaaagtc attgtaattc ctaaattaat aataaatatt ataataaaaa agtgtaatga
    17221 aattatcctt cttgtaaaaa gaaggataaa tatttaaaaa gaaaagtggt ttaaattttc
    17281 tagattgatg atttgatcta gaattttgtt agctttagca ttatcaaggt aaatttgtgc
    17341 attggctaaa aatttagctt ttaattcttc aaaacttagt ggattatcaa aattaccttt
    17401 attgataaaa acatcttttt ggattatgcg tccatcttgc aaactggctt ctaaatgccc
    17461 tggaaaatat tttggaaagc cttgagattt tcttttttcg taactgattt ttttagcaaa
    17521 ttctagtact tcttcacgct ttaaattttc ataagaatca agagtgattt tgccatcaaa
    17581 gaatcctaga gccattaaaa aaggcatgga aaatttagct tcataagcac tatttggagt
    17641 gtattttgct tccaaaggat cacagataaa agaaatagga acttcatcta caaaacaatg
    17701 aatactttta atttcatcag cttttaaacc atcatttttt aaagcaatgg cacaatcaat
    17761 aagcccatga gcaaaatgac agcttggata aggtttgatt gaaacttgca tggtttgcca
    17821 aatttcacct aaggctttgc caagttctgt tttatcgcat tcttcttcta tgccaaaaca
    17881 tttaaagata ttatccctac cttcaaaaat actcaaaggc ccactcatat tgtttttagc
    17941 aaaatgagcc accataatgc cgtttttaat agcattggca atatgtaaaa cttttgaatt
    18001 agatccattg gataaaaact cattaacccc acttgcaaaa cttcctgcaa gtcctaaagc
    18061 attaatgatt tgttctttgt taagatctag caagattgca cttgcactca cgcttccaaa
    18121 aattcctgca atagcagtag tatgaaaacc acgcttatga aaagtacctt tgcttgcaat
    18181 gcctactcta gctgcaattt cccagcctac tataaaagct ttgatgattt tttttgcatc
    18241 tttgttaaca tgaaaaccat aacttaaaca aagtggagtt aaaatcgcac ttgcatgcaa
    18301 aatcgcttct gtatgcgtat cgtcaaaatc taacgcatga gaagcaatgc catctagcat
    18361 agctgcgtat ataggaacta gtttttgatc atttacccaa ataggagtat ttttatctgt
    18421 gcttaaattt tcaaaagctt taaaagcatt taaaacacat tcttctttgc ttgctgctat
    18481 ggctgttcca aggctatcaa gcataagctc tttagccctt tgaacaactg tattagggat
    18541 attttcatat ttaagattga aaataaaatc cgctaaaatt tcactataga acatgatttt
    18601 tcctatttta agatagcgct atttttgatt tttgctaaaa attcatctac aagttttggt
    18661 gcatatccta cataggttgt tgcatcaagt aaagcatcaa tttctttttc tttcaatacc
    18721 ttagatactc ttttatctgc aagtaaaact tctttaaaag ttttttgttt ttctatacct
    18781 agcatagcat tttcataaac aatttcatgg gcatgttgtt ttccataatg atcgcttaat
    18841 gcaaacataa cacgctcggc taaaacaaaa ccattaagag tatttaaatt tttaagcatt
    18901 ttgtcttttt ttacttctaa atcactaaga gcgaatttca tatttgctaa aaccacagaa
    18961 agcattaaaa acatttcagg taaaagcttc cattccattt tccaaacttg accatctctt
    19021 tcatgttcat gtctttcaat atcgcttaaa atggctaaat ttgctttaaa ggcattgctt
    19081 attgtaaccg cattttcgct tactgcagga tttcttttgt gtggcatagt gcttgatcct
    19141 acttgtcctt ttccaaaagg ttcagcaact tcatcaattt cattatgcga aaggattaaa
    19201 atttcatgag cgattttgtt aaaggttgcg ttgatattac ctagtacaaa accaagctct
    19261 ataaagcgat cacgtgcggg ttgccaagaa atattaggca catcaagtcc taaattttct
    19321 aaagtgagtt tttctacttc attgcactca tcacttaaac ttgctttagt tcctacagca
    19381 cctactatac tacctacata aagtcttttt tcaagctcaa gtattctttc aaaatgacgc
    19441 tcaagttcgc ttaaccaaat agccacttta tgtccaaaag taataggcaa agcttgaagt
    19501 gctaaagttc ttcccatcat agcagtgttt ttatgggttt tagctagttt cgctaaggct
    19561 tttgcgatag cttttaattc actttttaca agagtcattg cttctttaaa ttgtaaaacc
    19621 agtcctgtat cgatgatatc ttgagtggtt actccaaaat gtacatattc gcctaaatta
    19681 ttatcgcaag ctttttctaa tcctcttaca gtaggaacta aagggtgttt ggtcttttta
    19741 aattcagcaa agataaagtc catatccata aatttataat gagctttttt tgcgatctca
    19801 tcagctgctt ttttagggat aattttaagt tttgcttgtg cttttgctaa agctgcttca
    19861 acatcgagcc atttttgtat gcggttttgt tcgcaaaaaa tagcacgcat ttcctgcgtg
    19921 ctccatgagt ctgctagtaa tctatgatca aatacgctaa ttcctgtcat cttatctcct
    19981 tattttttaa tactatcaaa agcttgtgtt aaatcagcaa ttaaatcttt agtatcttca
    20041 agacctatat gaaatcttac aaatggtcct cttgcactcc aatctgttgc agttctaggt
    20101 ggagtagtta cggtggctaa gctttcatat ccaccccagc tagcaccaat tgaaaagtat
    20161 tctagtttat ctacaaattt aatagcatca tctttgctat aaccttctgt aaattctatg
    20221 gtaatcatac catttgcacc tttatgatca cgcatgaaaa tttcatgatt tgggtgggat
    20281 ttgagttttg gatagaaaat tgttttaatt tcttttctac tttgtaaaaa ctctacaatt
    20341 tcatcagcac ttttttcatg agctttcatt ctcacatcta gtgttctcat accacgaagt
    20401 actaagtaag catcatcagg acttgttgta aagcctaaag cttctggaag tttgtcaaaa
    20461 tttttccatt ctttttcgtt gattactact atacccatgg ttacatcaga gtgtccacta
    20521 agatattttg tagcagcgat aactgaaata tccactccaa gttctaaagg atttaaaaaa
    20581 tatccactag aataagtatt gtcaatagct acagggatat tatgcgcatg ggcaattttg
    20641 caaagttttg gtaaatctat gacttcataa agtatagaac ctggactttc acataagata
    20701 agcttggtat taggtttgat tttttcttct acatcacttg catcagcttt taaaaaatca
    20761 atttcaactc ccattttgtc taaaaataat tcgcaaatcg ttcttacagg cccataaatt
    20821 gcatcagtga ttaaaaaatg tgcatctttg cttgcatagt ttaaaagcac catagctaat
    20881 gctgcaagtc ctgttgggaa aagttgtgct ctataaccac cctctagagt gcaaataagt
    20941 ttttcaagtt caaaattggt tgttgttcct ctagccccat agcttaaaac acgatctgtt
    21001 tttcttaatt ctctgtattt ttgccaagtt gcgtgatctt taaaaagtat ggttgatgca
    21061 cgcataagtg taggattgac tgatcttact tcagcgcctt gatcgcctct gccacaatga
    21121 ataagtttag tttttgagtt cattttttct cctttttaaa gatagatata agtcataata
    21181 acatttacaa tagccgctac aagcatagga atagctgttc ttttaaccac ggcaaaagga
    21241 cttacttttg caatagctga gatagctaaa atcgctggtg caataggact aacacatctt
    21301 ccaaagcccg tcatgatttg aattggtgct atcatggtga tagtttcaac tccaaagtgt
    21361 tttgctatat ttgggataag tggagcaaag ctaaaaaatg ccgcatttcc tgaacccatt
    21421 aagaaagcac aaactgcaag caagattgaa acggcgataa taatagccaa aactccaaat
    21481 cctgcatttt tgcaaaattc tattaaagta tctacaaaac ctacagataa aagaccgctt
    21541 gcaaatactt gaccacaaac gatgagtgaa actgtgataa caaataaatg tcccattcct
    21601 ttaaagaaaa tcataataga attaagagtt tctactatac ttttatagcg tatcatttca
    21661 aaaataatag ccacaaaagt tgaaatcacc attgctactg gaacattcat tttaatggca
    21721 gtgctagcaa ctgctttaac ttcttcagca ctacttattc ccattaaaac caagatgcta
    21781 tcaagcacgg aactaaatcc taggattaaa accaaaggaa ttataggtaa aatcgcataa
    21841 attctaggag gctttttaag ttctttttct ttaccttcat tttcatttag ttctttttca
    21901 atttcttgtg cattgaagac aaaattatct tttttgtcaa aaaatttatt gcaaagatat
    21961 atcgcaatac ctacagctat aatgataggc aaggttgtag ggagttgata atgaacaaaa
    22021 taaattgcag gatcaacttc agctactttt gatgccatga tcacatttcc acttccaggc
    22081 ccatgatcga tatattgaca aatagcaatc acacttaagg cagaaagttt tgaaacacca
    22141 gagcgtacaa gtataggata catagtaacc ataagtaaaa gtgccaagcc tgcgtgagaa
    22201 gggatgaaaa gaactaaaaa ttgcacgata aaataagcaa ctatgagtaa aacataagga
    22261 gattttacgg cttttaaagg tttttcaaaa actttaaaaa gtgcataaga agcccctaca
    22321 tgatccatat aagcagaaaa acctgctata gtcataagtg taagtccaag ccctgctaat
    22381 gtacttgaca tggtttgatt gaaaacttga aaaatatcaa aaaaacctaa atttaaagaa
    22441 cctttagtga caatgtgtgg agaaagtcca aaaagagcag ctaaggaaag taaaagtaaa
    22501 ccacttaaaa gcaatgccat gtgagcattg atttttttat aaagcataaa aacaagtaaa
    22561 aaaacactaa ataaagaaaa aacaatacct agcatgtttt atcctttttg agcgatgatc
    22621 tctatctcta ctttagcttt ttttggcaga tcttttactg caaaagcact tcttgctgga
    22681 taaggagctt taaaaaattc agcataaatt tcattaaatg ctacaaaatc attaatatca
    22741 gctaaaaagc aagtggtttt aatcacttta tcataactga taccattttc ttctaagata
    22801 gcaccgatat tttttaaaga ttgtttggtt tgttctttga tatcagagct ttctatttct
    22861 cctgaagcag ggttgatagg aagttgtcct gatataaata aaagtccatt tgcttcccta
    22921 taagctgagt atggaccaat ggcctttgga tagtttgaca tgaattctcc tttgttaaat
    22981 atagattaaa cagaatgcat tttatcacta caataataat ttgtcaatag tttattatca
    23041 taataataaa attttatttt taagaaatgt tttaaagtat aaagagtaga atttaatatt
    23101 atattaattt tttattgaag gcagttttat ggatgaggga caaaaacaac aatttataaa
    23161 gttgacatat tttttaggag aagttttagg tgagcaatat gagatagttt ttcatgtaat
    23221 tactgaagat ggggcttata ttgcggcaat tgctaacaat cacattagtg ggagaagttt
    23281 agattctccc ttgactgctt ttgcaagtga gcttatgcaa aataaaaaat atttagaaaa
    23341 agatttttta tgtgattata aggctcttgt tggaaaatca aaattaatta gaggatctac
    23401 tttttttatt aaaaatcatg acaaattagt aggtattttg tgtatcaatc atgatactag
    23461 cattatgaga gatttaatat gcaagatgat tgatttagaa aaaattggag atatgggtga
    23521 tattttagga aatattagtt tttctcaaaa tgattcaagc atagaaacat taagtcactc
    23581 gatagaggat attttagttc aaagtgtaga ttctagttat ttaaattcta attatcaatt
    23641 aagcattact caaaaagaag aaattgctga aaagctatat gaaaaaggta tttttaatat
    23701 aaaaggagcg gttcctatcg tagcaaaatt tttaaaaatt tcagaaccta gtgtttatag
    23761 gtatctgaag aaatttaaaa aataactaaa attttttgat aaattttagt atttttaggc
    23821 tcgttttctt taaaaaatta tttttagatt ttttgagtaa aaattctgcc acatctttgc
    23881 gtccaaacat aatagcaaaa gtataaggtg tcattcctaa accattgttt tcatcaatat
    23941 ttgctccata tttaactaaa agttcacaca taggtaagta tcctttaaaa caaactcccg
    24001 ctaatggggt ttgtccacga tcgttttttt catctacttt tgcacctttt tctaaaagca
    24061 ttttagcgct ttcataagaa ttattataag ctgcaagcat aagcaagcta tcgcctttat
    24121 gagtttttaa atttgcattt aaacctgctt ctatcatgat tttaagattt tcacattcat
    24181 tatttcttgc aaaattaaaa gccattttgc aaagctcttc aaatcttttt tcttcttcta
    24241 aactaagagt tgtcattgtt tttccttaat tattataatc tttagtttgc caccaaaagt
    24301 ggcaagtaaa aattattttt ctaaagcttt tttaattcct tttgcataat caggtgaaat
    24361 tttttcaaaa tgttctaaag ctctagtgat aattttttca tcaactccct ccatagaagc
    24421 ggcgatatta tgaaaaagtt gagttttttg atcatcattc ataagattaa ataaagctct
    24481 tggttgagta taaaagtcat tatctagtgg agcatatctt tgtgctacgc cttctaagac
    24541 taaatcaggt tcaagatagc ttttgtcttc ttttgggcta ttatcatagc tgtttggttc
    24601 ataataagct gcatcatttt tataactatc aaaattcata gcaccagcga cattgtaagt
    24661 attcacttcg ctttttgcac gatttacggg caaaagatga taattagttc ctattctata
    24721 tctttgtgca tcaggatatg aaaaaattct agcttgcaac attttatcag ggctaaagcc
    24781 aattccagga acgatattgc ttggactaaa ggcagcttgt tcaacttcat taaaataatt
    24841 ttgaggattt ttgtttagaa tcatttcgcc tatatccatc aaaggcacaa gactatgagg
    24901 ccaaattttt gttaaatcaa aaggattaaa tccaagtttt tctatatctt tttcagcaag
    24961 aatttgaact tgaactttcc attttggaaa atctttattt tctatagcat tatagagatc
    25021 tctttgatga ctttctctat cttttgctat aagctcggca gcttcttggt tggtaagatt
    25081 tttaatccct tgttgggttt taaaatggaa tttcacccaa aatctttcat ttttatcatt
    25141 aataaaacta taagtatggc ttccaaatcc atgcatatga cgataacttg caggaattcc
    25201 tctatcgctc ataagaatgg ttacttgatg taaactttca ggacataaac tccaaaaatc
    25261 ccaagcagca ttattgcttc ttaaatgtgt tcttggatct cttttttgag tatggatgaa
    25321 atcagggaat ttataagcat cacggatgaa gaatgtcgga gtgttatttc ctaccaagtc
    25381 ccagtttcct tctttggtgt aaaatttaat agcaaaacct ctcacatcgc gttcagcatc
    25441 tgctgcacct gcttcacctg caacagtaga aaagcgtagg aaaagaggag ttatttctcc
    25501 tttttgaaat atttttgcct tagtataagc agataaatca gcggtgattt ttatttctcc
    25561 ataagcccca cttcccttgg catgaacggt tctttctgga attctttctc tattttgatg
    25621 agcaagtttt tcaagcaaaa gataatcttg cataagcaaa ggtccttttg cgcctgcact
    25681 taatgaattt tggttatcgg ctataatgtt tccaaaatcg ttagttaatt ttttcattgt
    25741 tttctcctaa ataataaatt ttattaattg gtaaattata tctattaaaa attaaaatta
    25801 actgaataat tgcattttat tgataataaa tttcaaaata aatttagttt ttttatatta
    25861 taataataat tatcaaaata tattttaaaa atcacaaagg agaatttatg tcagttttgg
    25921 ttattggtgc agatgaaatc actcctatta gagctgtttt acatgattta ggtgctaaaa
    25981 aaatagaaca ctgggatgca cgtaatgaaa atagagttaa tcgcaagccg attccttgtg
    26041 atacagaatg tatagtaatg ttaacaagct ttttaaatca taatactatg aaaaaaatca
    26101 aaaatgaagc taaaaagcgc aaaattccat tagtatgtgc aaaaagaagt gtaagttgtg
    26161 tgtattgtga atattgtaaa atttttaatc ttaataaaga attttcttgc tataaaggtt
    26221 aaagatgtta tttggatttg atgataagcg agaatttata ccgcaaattt atcgctattt
    26281 aaacaatcaa gagcttatgt tgactttttt aactcaatat aatgcgagcg ttgatagtgc
    26341 tctaaaaatt cctcttttat atgcaaaaaa taccaagagt ttaaaaatga tatttggaaa
    26401 ttttttgcat aatataatgc atgtttcatt tggtaagatt caaaatataa atatcaagct
    26461 taatacatac gctttttact ttcaaaaaag aaaaagcttg atttttaata ctaaaatatc
    26521 taagaatatc gatcttttaa gacttttaag aatttatctt tatggcattt gttttgatgc
    26581 acaaatttta tttagctctt atgtttatga taaggtttct tttcaaaata atggaaaaaa
    26641 tatagatcaa gatggtgatc ttattataat agataagaaa tttgcaattt taccactttg
    26701 taaagagatt aatgcacata atttaaaaat tgaaaatgaa attcatggat tattgaattt
    26761 aataaaagaa aacaattttg aaaaatttta tattgtttgt ccgcgtaaca aaaatttcac
    26821 acattttatt gaaataaaac attttttgtg tgatttaaac aaaactatgt taaaattagt
    26881 tccgtataaa atatcaaatc aaattataag gagaaaataa tgtcagtagc agtaatctat
    26941 ggtagtgcta tgggaaatac agaaggagcg gctaatacaa ttgcttcaaa acttggaatt
    27001 agcgatgttt ttaatatctc agatattgat gcggctaaaa tgaattctta cgataaatta
    27061 atttgtggaa cttcaacttg gggaagtggt gatttacaag atgattggga tggttttgat
    27121 ttttcagggc ttagtcttgg tggaaaaact gtagctgtat ttggtatggg tgatagtgaa
    27181 agttattctg acactttttg tggcggcatg ggtaaattag ctcaaaattt aaaagatgca
    27241 ggtgcaaatt tggtaggaga agtttcaact gatggttata catttgaagc aagcgatgcg
    27301 gttgtagatg gtaaatttgt tggacttgct cttgacaatg ataatcaaga agatcaaact
    27361 gaatcaagaa ttgatgcttg ggtagaacaa atcaaacctt attttgctta ataattctta
    27421 aaatcaagag tttttatact cttgattgtc ttttcttaaa aataaaaaaa actcactatt
    27481 tgatttataa ttttattttc taaagataat tgacagcgtt ctttatttcc aagataagct
    27541 gttcttgcaa gaagacttgt tttttgagaa ttgtgatttt tagagttgat ttgtaaatta
    27601 acttgcatag tatagtagtt ttctaccatc cattctccat cactttccaa aggatcaaaa
    27661 tcataaaaaa atcttgctga agttgtgatt ttttgagcat aagaatgctt tttcatatct
    27721 acaagattga ttaaaatttc ataatctgca ttctctttta cttcttttaa gcctaaattt
    27781 ttaagtttta aagccaaatc tctatccaaa gtagttcgaa gttggctagg attttgaaag
    27841 gaaattttaa aactttgttg tttttgtgat ctgataaaaa tgccttcatt gcttgtttga
    27901 ataaagcttt gtatgaaagt tgcattggtg caagcactca taaagagtgc tataaaaaag
    27961 cttaaaatta aagtaatttt agacattagg tttatttaat aatagttgga gtagcgctaa
    28021 gacctaatga gcgatatttt tcatataagg aaaaaacttc ttttaattct gtatcgctta
    28081 cttttggata atttttgata tttgcatcat agtatttgtt taaaattgcg attttttctt
    28141 tgtcattttt tgcttttttt gcttctttgt agattagagc ggatttttca aaagcagatt
    28201 ttccatgtac tggagttaaa atataattaa cttgatagtt tttaagttca tcatcaattt
    28261 gagctaaatg ttctctacaa taaggacatt caggatctga aaaaacataa atcgcaggtt
    28321 tatttttatc tcccaaagct attaccatgg tttctttttg tgctacagct ttagcatttt
    28381 ttgtaaaatt ttctcttgct tcttgaaatt ttttcatttc atattcttga gcataagaaa
    28441 ttcccgtttt caagtcgata agatcagggg taataagact atcttttgta aaaagaatgt
    28501 tttcttgttt ttgcccattt aattcaacgc ttacaataac actttcaaaa cccgtattac
    28561 caaccttttg acgatttgat acactaacgg tagcatttgg aaattgtgct ttaatgcttt
    28621 ttgaataaaa atcactaatt tctgaactac ttgcagcaaa caaagatgct gaacaggcaa
    28681 gaattaaact taattttttc atagtttata aatcctttaa ataaattatg tttaattcta
    28741 taatgatttt ctaaatgttt gttaaaaatc ttttttcagc ttctttgttt acttgaggaa
    28801 atttgtctaa gtattctaaa taagcaatag catattttct tgaaagattg aaatattctt
    28861 tcatactttg cacatcaaga ctttgatttt ttaataaatt taaacattct tgcataagtt
    28921 tttcaagagc ttgtttttct ataaaaagat tgtgtgaaag tcttacaacc aagccttttt
    28981 gggtaagttt tttgagtata ttatctccgc tttttctgtc aagttctaaa aaatcataaa
    29041 gattataagg agcttcgggt ttaatacctt gtttttttaa aatttcatac atttggttat
    29101 tgtttttttc ttgaagtttt tcaaaatcta tacctttttt aaaataaatt ccattttgaa
    29161 aatccaataa atttgacatt tttttaagcc caagttcgca aaaattttca cttgcccaag
    29221 taatccttaa agctaaagaa tgtgctgaaa gcatggcata aggatttttt tcaagtatga
    29281 atttgatgaa atttttaatt tcttctagac tttgtaaatg atatacatta agattttttt
    29341 catcgacaaa tacttgattt aattctttcg ctaatttcaa tgctttttga tgagagagtt
    29401 taaatctctg atagcttgaa agcaaaccaa agccgtattt atgtgcgtct tttaagaaag
    29461 aaaaagctgc tttaaaatct ttatttttca aaaacattaa aaatttattt ttttgttctt
    29521 tttttaaagg ttcgcttaaa ggatttaaaa ccttaccacc gcctataaca cgattgtttt
    29581 gtaataaaat aaaagcctca tcaaaactta aaaatacatt tttatcaaaa ctaaaatgca
    29641 caaaaaattc atcattttct agttttttta atatatttat tttgcattct atttgtcttg
    29701 aacccacgca aaaaatcatt ttgctatttt gtaaattttt tgctttaact aaagcatcgc
    29761 attctttaaa ggctttaaaa taaccttttt tacttagcaa ataacctttt ttcaactctt
    29821 tataatcaca atttaaactt aaagccacac ggttacaagc tttgatttgc tctaaattag
    29881 tatcgtgatt ttgtatattt ttaacaatga gttctttttg agtgtctaaa cagatgattt
    29941 tttcatttaa agtgatactt ccttcattca ggctacctgt gacgacagtt cctatgcctt
    30001 ttagagaaaa aactctatcg atataataat gaaaaatcag ttcttcattg ttttctttgt
    30061 tttctatggt ataaagataa ttttttaatt cttctatgcc ttgattattt tttatactgg
    30121 tgtgaaatac ttttaaaatg ggataatcta aattttttaa ctcttctaaa atttctacac
    30181 ttttttgctc tatattttca caaagatcac atttgctaag cactaaaatg atatttttaa
    30241 tatcaagaat ttttaaaatt tctaaatgtt ctaaactttg ttcttttaaa ccctcgttaa
    30301 tatctacgac aaataaacaa atactaaagc caaaagctcc acttaccata gttttaacca
    30361 aatctttatg ccctggaaca tcgataaaag aaatgttttt atcttttaat ttaagatttg
    30421 aaaaacttaa attaatggtg atttgtcttt cttgttcttc ttttaagcta tcgccttcaa
    30481 aaccatttaa agctttaatg agtgaagttt ttccatgatc aatatgtcct gcggttccta
    30541 taataacaga tttcataagt tttccatttg attgattata agaataagtt tttgaagttc
    30601 attttctcgt atagttctaa aatcaagaac aaattcatca ttttcaatgc gtcctatgat
    30661 attttctttt ctaaatcgag tttgtagttt taaagcatct ccttgaaaag tcagtatata
    30721 agtatctaaa cttttatcag gcatagaacc tcctcctact aaacttttgc tttttttaag
    30781 ctgggtttga aattttaatt ctttttgcac tcttaaagct tttttttcta taaaggataa
    30841 gtcatcattt aaaagtttta aggtaataat tttttcataa tctttttgca aataagcttt
    30901 taagctttcg tttaaaaaag atagagttaa tttatccact cttagcattc ttaaaagttg
    30961 attttgttta agtttttcta tgagttcttt ttttccaagt ataatgcctg cttgcacact
    31021 accaaaaagt ttatctccac taaaacttaa aatatcacat tcttgtacga gttttttgat
    31081 tttaggttca tttttaatca gtttttcatt taaattttca caccagccag aacctagatc
    31141 ataataactc aaaagccctt tttcttttgc tagttcatgt agatctttta tatttacttc
    31201 actgtgaaaa cccataagag cgaaattaga cttgtgggtt tttaaaatta gagcggtatt
    31261 ttcactgata gcttgttcat agtcttttaa gtgtgttttg ttgctagttc caacttcgca
    31321 aagctttaca cctgcagctt ttattacttc aggcacgcga aaactgccac caatttctac
    31381 aagttctcct cttgagctta tgatttcttt attgtaacaa agagaattaa gtactaaaaa
    31441 aactgccgca gcgttgttat tgaccactaa agcatcttcg cattcaaaaa gcattttaag
    31501 tttttctagc accaaagcat agcgagagcc tctttttcca ttttctaaat caaactctac
    31561 attagaataa ttacaaatga tatctttaca cgcttcataa agttcttcat ggattacact
    31621 tctaccaagg tttgtatgta taaccactcc gcttgcatta atcacacttt gtaaatcttt
    31681 gcggtaaaaa gttttgattt cttttttgat ttctaaaagt agtttatctt tagaaatttc
    31741 atcttgggaa aaattttctt ttagttttgc gacaactttt ttacaaaaaa atgctttgat
    31801 ataaaaagga taggatttta aactctcatc ttcaataaga gtgttaattt gtggaaaagt
    31861 tctaaatttg ttcatcttaa gccttaagaa aatatttggt tattttaaca tagaatttat
    31921 aaaatgatgt tttaaagaga ttaaggaaga taatgcaaga ttttgtttat ataaaaaatg
    31981 atgttttaat ccctttgccc gatgctattg aaattttaga tcaggcaaat gataaagaag
    32041 tattagtttg caatgataaa aatcaaaaag cacaaattta tgcccctgag attaattttt
    32101 atcttaaaaa ttctcaagat gaaattttag agcaaagtaa aaatgtttta acgctttata
    32161 aagcaagagc tagtgtttat gatttagggc ttgatttaga acaaagcaaa gaagtgcaaa
    32221 atcgtttgat tttagcagac agcgatactc aaaccgtaga gtttttaaaa gaacatggat
    32281 ttaaggttat tgctttaagc agtgtagaaa ttttagctgt ttttggaagt gtaggggagc
    32341 tttgtgctgt ggttaaaaat caaggcgaag aagtggaaat agattttgat tttttacttt
    32401 ttaaagctga ggatttaagc gctgtgcgta aagattttac aagacaaagt ggatgttata
    32461 atcttttaaa ttttgaaaat cttgaagtat tgttagagtt tttgcaaagc aaaagtccaa
    32521 aatatcatta taaaacttat attagctata atgctagcgt gtgtcaatac cacgaaagac
    32581 gcagtgagca ttgtgcaaaa tgtgctgaaa tttgtcctac tgtggcgatt ttaaaagatg
    32641 atgaaaaaaa gcatttagaa ttttctcaag tggattgttt gggttgtgga ggatgtatta
    32701 gcgtgtgtcc tagcggatca cttgattatg ctcctatgcc aagagaaagt ttttttaccc
    32761 tttgtgagtt ttataaagat aaaaaaattt taatcattcc taaaaaaatg tctttagaaa
    32821 atttaaatct tgctttacca aaagatgttt taccctttat gatagagggt gaaaaatggc
    32881 tttcttctat gcatttttta gcccttttgc aaaatagtgg agcaaattta gttttttata
    32941 cggattttgt atctcgtggt agtaatgagg ctattgtgct tttaaatact ttttttgaga
    33001 gaaaatttca aaaaaaagct atttttgttg ctaaagatga aaaagaattg caaaatgttt
    33061 taaaagagca agaattcata caagatttaa aatatgattt tcataacaac accttaacta
    33121 caagagaaaa ttttgccaaa agaatgcaag aaatgataaa aaatgaagat tttggcagta
    33181 tagaaagtgg cgaatggttg cgttatggta aggtagaaat caatcctaac acctgtacgc
    33241 tttgtctttc ttgtgtgggt gcctgtaatg taggagcttt aatcgctgat aaacaagaaa
    33301 atgctttgaa atttaatgcc tctctttgca cgacttgtgg gtattgtgag ttaagttgcg
    33361 ctgaaaaaga tactttaaaa ttatttcgta gtggaatgga gtttagagct tcttattttg
    33421 aatatcaaac catggcaaaa gatgagcttt ttgcctgtat agaatgtggt aaagaatttg
    33481 ccaccaaaaa agctgtagaa aaaatagcca atttaatgaa acctaaattt ggtaatgatg
    33541 agaataaaat caaaacactt tattgctgtg cagattgcaa ggcaaaagtg atgataaaag
    33601 caatgggttt tgcggggcaa aattagattt agatcttaat tttgccttct aattcttctt
    33661 tatttataag tttgctatca aatttaacaa caagattttt agagttttta taaatatcta
    33721 caacccctaa attttcacta aaagtactga aacttaaagg cgtttctaaa ggtagataaa
    33781 ggtttttaaa atcagctgga ttttttaaga aaaataatgc cacaagccaa attagagcta
    33841 aaattactaa aataatagcc aaaagattta aggcatctag atgtaaaaat atccctccga
    33901 taataccacc tataaaactt ccaccatatc caaaagcatt aaacaaccct aatgctgcac
    33961 ctttttcatg aactttacaa aattttgatg cacaactttg cataataggt tcgtgtaaat
    34021 taaaacctat aaaaaaaatc acaactgcta tgataaaaaa aactatagaa ttactaaaag
    34081 caaaaaaaag ataagaaagt atgaaaaaaa caattcctaa gagtaaaatt tgtttagcta
    34141 aacctctttt ttcgcctaaa cttccagcaa agcccatagc gataaaacct gccaccatag
    34201 aagcgctata aacaatccaa agtttatcag aagcaaagcc taaatgtttt actagaataa
    34261 taggaatact taaaaatgct atactcataa gcattttttg catgaaatta gtaagattca
    34321 taagggctaa atttttttgt ttaataagat gaaaaaaagg agttttttca ttttcatgag
    34381 tgattttgtt ttctttaggt acaacggtat aaagtaaaat tatacataaa agagacaaag
    34441 ctgcactaag atcaaaaagg ctagataaac cccattttgc actcattaaa ggagagatta
    34501 ccatagaagc tgcaaaacta agtcctataa aagaacccat tactgccatg gctttaccac
    34561 gattttcttc tgtgataaaa tcacttatca ttgctgtagc cacagctcca atagcccctg
    34621 caccttggag cattctccct aaaagcatgg tgtaaatatt ttctgcaaac gagcagatta
    34681 aagagcctat tataaaaata atcagtccaa tgagcatggt ttttttacga ccaattttat
    34741 cacttaaaat cccaaaaggc atttgtaaaa tcatttgggt taaggcgtaa acaccaacta
    34801 aaagtcccac taaaaattca ttagcacctt caagttttaa agcataaaga cttaaaactg
    34861 gcaaaactat aaaaagccca aaaaatcttg ttccaactat gaaagataag ggtaagacat
    34921 tatttagcat tatcaatttc ctattaaatt tgaaatttaa attaggataa ttttactatg
    34981 aaatggatta agcattgatt aacatcgttt tatcatttga tatttaaaag ctacgcacaa
    35041 ggataaattt tataaaatca tatttttgtt tttgatatta ttttggagct tttgttatga
    35101 agattatcct agctacgagc aataaacata aagttttaga acttaaagaa attttaaaag
    35161 attttgaaat ttatgctttt gatgaagttt taatgccttt tgagattgaa gaaaatggaa
    35221 aaacttttaa agaaaacgcc ttgattaaag caagagcggt ttttaatgct ttggatgaaa
    35281 agcaaaaaaa agattttatc gctttaagtg atgatagtgg catttgtgta gatgttttag
    35341 aaggaaatcc aggaatttat tctgctcgat ttagcgataa gggcgatgat aaaagtaacc
    35401 gtgataaact tgtcaatgaa atgataaaaa aaggttttaa tcaaagcagg gcacattatg
    35461 ttgctgctat tgctatggtg ggtttgatgg gggaatttag tacgcatgga accatgcatg
    35521 gaaaagtaat agatacagaa aaaggtgaaa atggttttgg ttatgatagc ctttttattc
    35581 caaagggttt tgataaaacc ttagcccagc ttagcgtgga tgagaagaat aatatctctc
    35641 atcgttttaa agctttagag cttgcaaaaa tcattttaaa gattttaaat aaaggataaa
    35701 aatgaaaaat tttttaaaat atatagctat tattgtttta atatatgctc tttatattgg
    35761 tttggaaact tggttttctt agaataaata gtgattaaaa agcttggtaa taagaacaaa
    35821 cttccactta aaagcaaaat cattacaaaa acggttaaaa ttccaaaata aattgttgga
    35881 ataaaattgc tactcaccat aacactaaaa cctaaaacta tgctaattgt ggtataataa
    35941 agtgctgaac ctatactaag gtgagaaatc ataatggctt cttctaggct tttgttttta
    36001 atttcttctc taaaacgata aatataatgt atagcatcat caacacctat gcctatagca
    36061 atagcagcta tagtaatact catcatatcc aaaggaatac ctaaaagccc cataagagca
    36121 aaaaccacac ttaaaggaat aacatttacc aatatagccg caactgaaaa ttttaaatct
    36181 ctaaaaacaa tgataaaaag tataaaaata gctaaaatta caaatataag agtatcaaat
    36241 tgcgatgaaa aaagactttg gagcatatta ttataaagca ccattatgcc tgtgatttga
    36301 acttctactc catcgttttt tacaagctcg ttgagctgtt ttttaagatc tattaaaaac
    36361 tcattacgtc ttaaattcgg atcagaatca acaatacgca tgctaaatct taactcgtta
    36421 ttttctatgc ttacaaaagg tgaaagcaag tcttgtttaa atttagcagg taaattctca
    36481 tttaaaaacg caagggcaaa atcatctaac tcttttccat cgttgatatt ttcccctagg
    36541 gttaaaagac tattaagact taaaaccgag cctacaaatt ctttgttttc taaaaattca
    36601 tgaacttttt ttgcaatacg tgttttttta gagtcaaacc aataagtttc ttgtgtggct
    36661 aaattttcaa attcactttc aaaactatca agagtatcac ttgtattttg atcgttttta
    36721 ttatttggaa aacgaatgat gacttctaaa ggcaaggttc cacctagatt tttatcaata
    36781 accaaaagtc cttttttgat ttcactacca tctttgaaat aattgacaaa agaattttca
    36841 actctgagtt ttaaaatgcc tattaaagct aagattatag caagaactga aattccataa
    36901 atcatgcgac gctttttagg atcaagagcg gttttggcgc aaaaggctaa aagattaaat
    36961 ttaaactctt ttttatgata attttttggt tttaaaagaa ctaagatact tgctaaaaac
    37021 aaataactaa agataagagc taaacctata cctatactca tcataatgcc aagttttatg
    37081 ataggttcga tatttgatag gattaaagaa aaaaatccta tcatcgttgt aacaatggca
    37141 taaaggctag gatttgcttt ggctagtaag gtttcaagca ctatgcgctc aactttagct
    37201 ttgggatgat tttgggtgct ttcgataaaa tgcgtgatca aatgaacaac tacacttaag
    37261 gtgataatta aaaccaaagc aacataattt gatgaaataa ctgtgatttg aaaatttaaa
    37321 agtgcaaaaa ctccgctagc tgcacttaag cttataaaac aaataaaaag aggtaaaaaa
    37381 acaaaacgcc atgaacggaa aaaataataa agtgcaagtc ctagtaaaaa cacaagagaa
    37441 acaccataaa gcacaagatc agattttata taagctatca tatcatcagc gatcatgctt
    37501 acgccaccaa ggtagagcgt atctttattt ttttcataat ttcgaactat gcttttaata
    37561 gtatctagac tttgtttcgt gataactttt tgcttgtctt gatgttcttt tatggcaaga
    37621 cgaatttgat ctttttcttt ttcatcacta gcaagatcgc gtttttctat aagattatta
    37681 taaactgtat caggctttaa gtaaataata agccctgtta cttttccatc ttttgagatg
    37741 atattatttt tataaaaggg actatttaaa atttcatttt gggcttttgt gcggtttata
    37801 tcttggcttt ctatatttgg gatatttttt aaaagttctt ttaaatccgt attttgcgaa
    37861 ctttgaagca aaggggcatt gatgatacta aaaacgcgtt ctactaaagg ggctttttct
    37921 aattcttcat gaagtttttt taatttggct aaattttcat ttgaaaaagg tttttcatca
    37981 tagggtttga aggctaaaag taaaaaatta tcacttttat aatgttttga aatttctcta
    38041 aaagttttta aatctgcatc atcttctaaa agtaaacttt cagcacttgc atctacacta
    38101 agcttaaaag caaaaaagct taaaaacaga catataaaca aggttccaaa aaaagtactt
    38161 tttggacgag aaataaaaaa ctttaaaagc tttgcaaaca ttattctatg acaatacttt
    38221 caagtttttg aagtagggca tcaaagcctt ggttggctaa aatatctcca aattgtgatc
    38281 tataagtttg tactatactc acacctaaaa catctacatc ataaataagc cagttgttat
    38341 tatcattgta aaatttgaaa atgatatttt tttcttcccc atctactacc gtagaagtgg
    38401 ttaaaaaata acgtttttca ttttttaact caccattttt gacctttaaa acctgatctt
    38461 tataaagact gagtttatcg gtaaaacttt ttttaagact tgtttcaaag gctgtggtaa
    38521 atttttcttg ttcttttggg gttaatttag aataattttt cgaaagactc agttttgcca
    38581 tgagtttata atctattatg ctatcaaaaa gtttaaaaat tccattagca gcttgttttt
    38641 tatcttcttt actatcttgt aaaagtttta agcttgcatc aatgtttttt tgcatagtgc
    38701 tagaaatttc atctagttgt aaggcaaaag cattaaaaaa taaagtcaag attaaaaata
    38761 tttttttcat taatttcctt tatttgctaa gttcattgcg tctttgctcg taagcatcac
    38821 gcaagaatgg atataaatta ggcgtgttgt gataaatttc atcaatttca tcaagcctaa
    38881 aactaagttc attaccaaat ccataagcac ttatagctat acttgcccaa gtaggatcaa
    38941 tgtaagcggt aaaacttgta taccaagttg caggtaaagt aagagtgtct ctaagattac
    39001 tagggccgag tataggtaag acaatatgaa aaccgcttcc tacaccccag tgagccaaaa
    39061 cagttcctaa gtccgcggga tgttttttaa gacccatttt tgatgccaca tccataagtc
    39121 caccaaagcc cataatagta ttggcagcaa atcttttaaa ttcttctccc gcttcttcaa
    39181 atttaaactg caaaacattg cctacaaaac gcaaaggagc aagtaaatta tcaaagaaat
    39241 ttcttgcccc taatcttata aattcgggag tgatagcgtt atagccctta agaacgggac
    39301 gcaaaccata atcatacaaa gccacattaa aacttgtcat agctttgtta tatcctgaaa
    39361 gtggatcgtt tacttgatag ttttggtatt cttgttcaaa atcatctaaa ttttgttctt
    39421 tagcaaaagc aaaaatagta aaaaaaatta aaataaaaga tataaatttt attctcaagc
    39481 aaaaactcct aaaaatttta aaagtaaaat tatagcaaat ttttaatcaa gatttatatc
    39541 ccagtaaaaa tccacccatt cagtagcttc ttttacttta aaatcaggct tcaaaagagc
    39601 agttttttta taaaaaatgg ttgcaatttt aagttctata tgaggaaatt tttcaagcaa
    39661 aacttttttt atttctgcta aactttctcc actatctact atatcatcaa tgagtagaat
    39721 ttttttgtgc ttgcttaaat caggaatgtt aaaaatttca attgtatcaa gtttttttgt
    39781 atcatcgtaa tgaattgagt ttaaagcaaa aagctgacgc gtttttaaag ccactgctaa
    39841 agaatgcccc aaactcatcc ctcctcttgc tatagctaaa agtgcatcag gattaaaatc
    39901 ttttttaatt tctttagcaa gaatttttac atcttcttta aattcttcat aggagtaaaa
    39961 tatcattata tatccttatt tattgtagtg ccataagtaa aaaattaccc aaagataata
    40021 aacttaaaac tataatgcca agattgattt tatcccattc gcgtttaaaa attcttacaa
    40081 gtaaataaga aagaaaacca aaagcaaaac ctgtggtgat ggagtaagta aaaggcatca
    40141 tgataatagt aaaaaagctt gctacagcta tagcactatc tttaaaatct atatttttaa
    40201 cttccataaa cattaaaatt ccaaccatta caagtacggg gtatattgcg tttgcaggaa
    40261 tggctttaaa aagtggcagt aaaaaaagtg taaaagcaaa acaaatagct acaactaaag
    40321 ctgtaagccc agttcttccc ccgctttcaa cccctgtagt gctttctaca aaagctgtaa
    40381 ctgtagaagt gcctgtcata gctcctaaag ccgatcctgt tgcatctgcc attaatgttt
    40441 tgcttagttt tttttctcca ttttttggat catcaaaaat ctttcctctt tcacccacac
    40501 ctgtgatagt tcctatacta tcaaaaagtt gagtgataaa aaaagtaaga attataggta
    40561 tcatagtaat atttaaggca cttttgatat caagttgtaa aaagatggct cctaggccat
    40621 tttccatgct aaaatttggc aaagaaaaga tttgcacagg aaaacttgca ttgtctaaat
    40681 ggaaaatcca agcgataata gagcttacta ataccccaaa aataaaagct ccgcgaagtt
    40741 ttatagccca aaaaaagatg attaaagcta gagtgaaaat tccaaaaagc acatgaggac
    40801 ttttgaaatt tcctatgctt actaaagtat ctttattatg catgatcaca cccatttgac
    40861 ttaagcctaa aaaagctata aaacaaccta tacccgcaca aattgcaagg cgtaaatctt
    40921 ttgggatatt gcggattacc caaaggcgaa aatgcgtaaa agaaagtatg agaaaaataa
    40981 tacttgaaat aaaaacagct cctaaggcac tttgccaagc tatgttttga cctaaacaaa
    41041 ccgcaaaggt aaaataagca tttaaaccca ttcctacact catagctaca ggagtattgg
    41101 caaaaaaagc attaaaagca cttgcaacta tggtgattaa agctgttgcg gtgattaaag
    41161 cttctatggg cattcctgta tttcctacta tgctagaatt tacggggata atgtaaacca
    41221 tagccaaaaa agtagtaagc cctgctataa cttcggtttt aaaactcgta ttgttttctt
    41281 tgagtttaaa aaagtccatt ttttctcctt agtaggtttt tagctcgtta tataaactat
    41341 cgcgttctac aggaataaga tttgaagttt ttatcatatc gataaaagtt tttaaacttg
    41401 tgcctttagc agattttgca ccacctgcac tttgtatgct ttctttttct atggtaccgt
    41461 ctaaatcatt agctccaaat tcttgtgcta ccatggctaa atttaaagtc attgttgccc
    41521 agtaagcttt gatattttta atattatcaa gcactaaacg agcaatggca atggttttta
    41581 aaatttcttc actatccatg attttatcag tttgtataaa gctattatcc ctttgccaaa
    41641 ctagagggat aaaagcatta aatccaccgg tttgatcttg aagatcacgc agtcttaaca
    41701 tatgatcgat cctgtgatgt ctttcttcta tatgcccaaa aagcatggta gcattacttt
    41761 gtttgccttt ttcatgccaa agtttatgaa ttttaagcca attttcactg ctaacttttc
    41821 catgacaaat tttcttacgc acttcttcat caaaaatttc agccccaccg cctggcatgg
    41881 aatcaacgcc gtattcaagc attttttcta tcacttcttc atagctcatt ttaaaacgac
    41941 gatgtaaaaa atcaatctca gcagcagtca tagcttttac atgaagatta ggatattttt
    42001 cttttatcat tttaaaaatt tctaaatacc attgccaagt tgtatctttg ttgtgagctg
    42061 aaacgatatg tacttctttg gtttctcgtt ttacggtttc atcgacaatt ttcataatct
    42121 cttcatgagt catcaaataa ggattaggat ttttacggtg tgctgaaaag gcgcaaaatt
    42181 tacaggtatc tgcacagata ttagttgggt tgatatgacg attgatatta aaataaactt
    42241 tttttccatg aagtttggtg cgttttttgt gagcgtattt gcctaaggta aaaagatcta
    42301 gatcccaaag tgcattggct tcttcttggt ttaatctttc ttcattttct agtttggtaa
    42361 ttaaattttt cattttaatt ttactctttt gctgttttta aataaagcat tataattttt
    42421 gcttactgaa aaagagttta tagaaaaagc caaaataaaa gatatttttg ttaagattat
    42481 ta
//
LOCUS       DAZAND010000003        41455 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.003, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000003 DAZAND010000000
VERSION     DAZAND010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 41455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41455
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.003"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            88..606
                     /locus_tag="ACHDOB_000094"
     CDS             88..606
                     /locus_tag="ACHDOB_000094"
                     /inference="COORDINATES: protein motif:HMM:NF016750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HFN3325059.1"
                     /translation="MEQNRRDFLKWSSLFGSLTLSPINLSANLLKTPPLISKWAGCNV
                     NCGTKCPVKVHTQDGIIKYVSTDNEGDDSFDNRQARACIRGRSSRYKVYNANRLKRPL
                     KRVGKRGEGKFMPISWEQAFDEISAKMQEIKEKYGNEAFYINYATGTTGTIINRCTQG
                     PWARLLSLYGGY"
     gene            648..2450
                     /locus_tag="ACHDOB_000095"
     CDS             648..2450
                     /locus_tag="ACHDOB_000095"
                     /inference="COORDINATES: protein motif:HMM:TIGR02166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009389 - dimethyl sulfoxide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMSO/selenate family reductase complex A
                     subunit"
                     /protein_id="HFN3325060.1"
                     /translation="MNFFYGGSPASDIYTLRSAKLAIFFGANHVETRMGGGGVGYAYQ
                     KALEESGCKIIHIDPRYNDSMIGHCDEWIPIAPGTDAALIAALTYVMIKEDLLDRTFL
                     DKYTIGFSENTLPQDAAKNSSYESYVLGLNDGVEKTPDWASKITKIPARRIVQLAREI
                     ATIKPCFIEQGWGVQRHSNGEQNARAIATLACITGNIGIEGTNTGCRTGSSKTYDIMG
                     MPFKNPIKDSIPCFLFTDAIYRGKEMTDISDGVRGTTQLKQNIKFIFNTAGNCLTNQH
                     STIKEVHDILSDENLCECIVDVNVTRTPSNNYADYILPDATMLEQEDFIRPSAGYYSN
                     KPYIIYCQKAIEPVGEAKPIYEMCLELAKRLGIEKEFSEGRTQKDWLKYLYEESMKKN
                     PLLPSFEEMCEKGLVKFEPVKPVVALQSFIKDPINNPLKTPSGKIEIYSTKLAQMQKT
                     WKLKEGQQIVPIPVFESQREGILDSLKQKYPLQFFGYHYKGRTHSSFWEIPQIREANP
                     QEIWINTIDAEQRSIKTGDVVQVRNDLGIIQGIAKVTPKIIPGCAVTPQGAWAKYENG
                     IDVGTCVNSLASIVPTAISKGNGQHSILVEIAKV"
     gene            2461..3117
                     /locus_tag="ACHDOB_000096"
     CDS             2461..3117
                     /locus_tag="ACHDOB_000096"
                     /EC_number="1.8.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMSO/selenate family reductase complex B
                     subunit"
                     /protein_id="HFN3325061.1"
                     /translation="MKLEENSQFGFMLDQSKCVGCRTCSLSCKDYKNMPVGVNFRRVF
                     ETEGGNWTCKEDGSFEQSVFAYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDS
                     MCIGCKACAMACPYGAPQFNHESGHMSKCDGCYERLKEGKNPICVDSCPFRALKAGDI
                     TKLREEHGNLASITPLPDASITHPNLCIVPEKHSLPSGNKSAIFHLPQNYQGVKNDII
                     "
     gene            3104..3970
                     /locus_tag="ACHDOB_000097"
     CDS             3104..3970
                     /locus_tag="ACHDOB_000097"
                     /inference="COORDINATES: protein motif:HMM:NF016838.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit
                     family protein"
                     /protein_id="HFN3325062.1"
                     /translation="MTSFNHILSEMPLVLFTILAQAVIGLSLVYAPAFINGYKNYANL
                     KSFGLALGIAMMVAFIPSFFHLNDITHIFNVLNRMGVFYANNEWHIGWMNNEILFVSL
                     VCALGFLLYLKTSNWVFYLTLICGILGLFFMSGAYGSMQESVPTWDFKITLLYFFASA
                     IFLGAIVYYCFFENSEHERKMSFFTGLIGIGLLSTAIVLQTLHVGQTWIMGLVNPFEL
                     LGGTYDWFISLSFAFLGLGIVTWYLHNYLHEKFKSKFFAYFALLCAFLGVFTTRMLFY
                     GLISTQIMLGHS"
     gene            3970..4527
                     /locus_tag="ACHDOB_000098"
     CDS             3970..4527
                     /locus_tag="ACHDOB_000098"
                     /inference="COORDINATES: protein motif:HMM:NF014651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HFN3325063.1"
                     /translation="MQKLAIDIFINFLQNPPNHFLLEKLKKEEFWQNWFLKNNSKLQC
                     TALKLLSSSNEDDKLIASDFTSLFLSDVDYVKAPPFASFYLDENKEIYSDNSDKVKQI
                     FAQNNFFSFFNEEPADSLINELLFISFLIKKQDDIILQKFLKEEFFTWFNMWSFDVIN
                     KAKTHFYKALTMLMQDFFNQLNTKF"
     gene            4594..5016
                     /gene="cgb"
                     /locus_tag="ACHDOB_000099"
     CDS             4594..5016
                     /gene="cgb"
                     /locus_tag="ACHDOB_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HFN3325064.1"
                     /translation="MTKEQIQIIKDCVPILQKNGVDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRNFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYIDIEKKLYDK"
     gene            complement(5036..6667)
                     /locus_tag="ACHDOB_000100"
     CDS             complement(5036..6667)
                     /locus_tag="ACHDOB_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HFN3325065.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNVDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKNKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(6717..8012)
                     /locus_tag="ACHDOB_000101"
     CDS             complement(6717..8012)
                     /locus_tag="ACHDOB_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3325066.1"
                     /translation="MRKLKFGTKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREHCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGAFMGYLVDKFGLFKICIFFSLTFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
     gene            8100..8897
                     /locus_tag="ACHDOB_000102"
     CDS             8100..8897
                     /locus_tag="ACHDOB_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFN3325067.1"
                     /translation="MFNFIITLLKTNLYFLEEKITSKSSNQTHIISLKQSDDEFLNLL
                     FSFLVPQSDEDKNFIEKTRTKIKRNEHNIALIKNPNFNALIDTGFLDTIDTLKEKLHT
                     HKTDFKDITHIILTRAHPDHIGTLMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTL
                     LKLKNIEFINHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIP
                     KPKIAIKFDIDQNEAIQTRKKLLKEFKERKLKVIGTYVPFIKPKFLD"
     gene            8985..9203
                     /gene="infA"
                     /locus_tag="ACHDOB_000103"
     CDS             8985..9203
                     /gene="infA"
                     /locus_tag="ACHDOB_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HFN3325068.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            9375..9488
                     /gene="rpmJ"
                     /locus_tag="ACHDOB_000104"
     CDS             9375..9488
                     /gene="rpmJ"
                     /locus_tag="ACHDOB_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HFN3325069.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            9491..9856
                     /gene="rpsM"
                     /locus_tag="ACHDOB_000105"
     CDS             9491..9856
                     /gene="rpsM"
                     /locus_tag="ACHDOB_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HFN3325070.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            9866..10258
                     /gene="rpsK"
                     /locus_tag="ACHDOB_000106"
     CDS             9866..10258
                     /gene="rpsK"
                     /locus_tag="ACHDOB_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HFN3325071.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            10286..10912
                     /gene="rpsD"
                     /locus_tag="ACHDOB_000107"
     CDS             10286..10912
                     /gene="rpsD"
                     /locus_tag="ACHDOB_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HFN3325072.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            10925..11938
                     /gene="rpoA"
                     /locus_tag="ACHDOB_000108"
     CDS             10925..11938
                     /gene="rpoA"
                     /locus_tag="ACHDOB_000108"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HFN3325073.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            11942..12295
                     /gene="rplQ"
                     /locus_tag="ACHDOB_000109"
     CDS             11942..12295
                     /gene="rplQ"
                     /locus_tag="ACHDOB_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HFN3325074.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFALLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            12468..13367
                     /gene="hisG"
                     /locus_tag="ACHDOB_000110"
     CDS             12468..13367
                     /gene="hisG"
                     /locus_tag="ACHDOB_000110"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HFN3325075.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCMLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            13375..14661
                     /gene="hisD"
                     /locus_tag="ACHDOB_000111"
     CDS             13375..14661
                     /gene="hisD"
                     /locus_tag="ACHDOB_000111"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HFN3325076.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAINAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQKEITQASNRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGATIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KTSDEVQSQLEFLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            14658..15716
                     /gene="hisB"
                     /locus_tag="ACHDOB_000112"
     CDS             14658..15716
                     /gene="hisB"
                     /locus_tag="ACHDOB_000112"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004401 - histidinol-phosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HFN3325077.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDVIPTLLKLK
                     NFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKISIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGISLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            15713..16300
                     /gene="hisH"
                     /locus_tag="ACHDOB_000113"
     CDS             15713..16300
                     /gene="hisH"
                     /locus_tag="ACHDOB_000113"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HFN3325078.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLKQFNLINFIKNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKVKEGFTFPHMGWNQVHSSHALFKGLEGAYFYFVHSYCVGLGEYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            16297..17028
                     /gene="hisA"
                     /locus_tag="ACHDOB_000114"
     CDS             16297..17028
                     /gene="hisA"
                     /locus_tag="ACHDOB_000114"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HFN3325079.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQLALIEKLAKEVSVNLQVGGGIRSKAEVRALLDCGVKKVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLAN"
     gene            17013..17969
                     /locus_tag="ACHDOB_000115"
     CDS             17013..17969
                     /locus_tag="ACHDOB_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HFN3325080.1"
                     /translation="MSSKLSYKELALEILKQSDKPLSANEIWQKALEKGLDKKLSSIG
                     QTPIATLGARIYVDIKELQHNSLFIKASQKPRTFWLKERENELLKLDNKNEITNEKQE
                     KNKFHERDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYD
                     DYEKETITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQE
                     IDSEVLSELRRLNQSFGIGVIKLEKDISNSQILLSAKEKELDIQTLNMLINKNPNFKE
                     FIDDINKQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            17970..18737
                     /gene="hisF"
                     /locus_tag="ACHDOB_000116"
     CDS             17970..18737
                     /gene="hisF"
                     /locus_tag="ACHDOB_000116"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HFN3325081.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKNSGKSTLE
                     WVKEVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKIEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            18739..19362
                     /gene="hisIE"
                     /locus_tag="ACHDOB_000117"
     CDS             18739..19362
                     /gene="hisIE"
                     /locus_tag="ACHDOB_000117"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HFN3325082.1"
                     /translation="MQNFKELNEKIAWQKVDHLLPVIVQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEKSGNFLNIVDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(19386..20546)
                     /gene="dapD"
                     /locus_tag="ACHDOB_000118"
     CDS             complement(19386..20546)
                     /gene="dapD"
                     /locus_tag="ACHDOB_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrodipicolinate N-succinyltransferase
                     N-terminal domain-containing protein"
                     /protein_id="HFN3325083.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     EGHQNIDLLKIIKDKFKDDEFAFVCLFEDKEPLSVESVYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(20572..21678)
                     /gene="mrp"
                     /locus_tag="ACHDOB_000119"
     CDS             complement(20572..21678)
                     /gene="mrp"
                     /locus_tag="ACHDOB_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140663 - ATP-dependent FeS chaperone
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HFN3325084.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNATEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSKRYLTA
                     AEKIWGFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            21801..22916
                     /gene="ispDF"
                     /locus_tag="ACHDOB_000120"
     CDS             21801..22916
                     /gene="ispDF"
                     /locus_tag="ACHDOB_000120"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HFN3325085.1"
                     /translation="MSEISLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSSVNLKYFDWTRL"
     gene            22913..23800
                     /locus_tag="ACHDOB_000121"
     CDS             22913..23800
                     /locus_tag="ACHDOB_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HFN3325086.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     VLLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKATEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDNEKNIDSNEILTIDEYVKYVIINYQNIFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            23778..24938
                     /locus_tag="ACHDOB_000122"
     CDS             23778..24938
                     /locus_tag="ACHDOB_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HFN3325087.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLILDEKVVGHIDFKSRFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIKKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDANGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            24943..25443
                     /gene="pgpA"
                     /locus_tag="ACHDOB_000123"
     CDS             24943..25443
                     /gene="pgpA"
                     /locus_tag="ACHDOB_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HFN3325088.1"
                     /translation="MQKLFLTFFYSGSIKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            25522..25785
                     /gene="rpsT"
                     /locus_tag="ACHDOB_000124"
     CDS             25522..25785
                     /gene="rpsT"
                     /locus_tag="ACHDOB_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HFN3325089.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            25804..26871
                     /gene="prfA"
                     /locus_tag="ACHDOB_000125"
     CDS             25804..26871
                     /gene="prfA"
                     /locus_tag="ACHDOB_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HFN3325090.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGTGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(26885..27640)
                     /locus_tag="ACHDOB_000126"
     CDS             complement(26885..27640)
                     /locus_tag="ACHDOB_000126"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004392 - heme oxygenase (decyclizing)
                     activity [Evidence IEA];
                     GO_process: GO:0042167 - heme catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HFN3325091.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDTIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANAEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAAS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMFDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVAHVGASGNPHKFPHKH"
     gene            27834..29951
                     /gene="chuA"
                     /locus_tag="ACHDOB_000127"
     CDS             27834..29951
                     /gene="chuA"
                     /locus_tag="ACHDOB_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HFN3325092.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNEAINLQKVVVSATGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGDKSNIA
                     VKVMIDGRAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSAYDHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQEGYNEK
                     GYFINTKTYIDINDNSDLTLGYDYFKSKNTSSGYLTKAQAQSDPTQKGNSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKIDYLKDEISMMGTTAYQNGSGFEDTLTGISL
                     KNKLNYANNSYFIFGYEFTNHDAKRKSLVYYSVPGVINYHRMTTLMDMTKQSHSIFAL
                     NSHNFNEFFTLSGGARYEFSTYDTDRSYRNEMSMNIPRPPSDSTTLFDTNKNTNNFAF
                     EITPNFKYSDTGNLYLKYERGFVSPAPAQFVNRNKTGNGIPPYYSSNLKAEIFDTFEL
                     GIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVELSLSQ
                     NFLDDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGLEYAWNKNFSNFIDLTY
                     FSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRYYTYQ
                     DSINDQYLVGNGRNYYVEFKYAF"
     gene            29926..30912
                     /gene="chuB"
                     /locus_tag="ACHDOB_000128"
     CDS             29926..30912
                     /gene="chuB"
                     /locus_tag="ACHDOB_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FecCD family ABC transporter permease"
                     /protein_id="HFN3325093.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYDNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            30912..31688
                     /gene="chuC"
                     /locus_tag="ACHDOB_000129"
     CDS             30912..31688
                     /gene="chuC"
                     /locus_tag="ACHDOB_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325094.1"
                     /translation="MLKIQDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGEISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKLVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            31685..32491
                     /gene="chuD"
                     /locus_tag="ACHDOB_000130"
     CDS             31685..32491
                     /gene="chuD"
                     /locus_tag="ACHDOB_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HFN3325095.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAEFLKQEFTQNLKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTHILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(32488..33345)
                     /locus_tag="ACHDOB_000131"
     CDS             complement(32488..33345)
                     /locus_tag="ACHDOB_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HFN3325096.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSRKGIRGVMSEEKFQNLAHEIS
                     NKAELFTFHLLGDPLLLPNLENYLKIAKSEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEVKIDTNLSKNRLQRHILLHQNKLFKWPNLKDEPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDAKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLGD"
     gene            33511..34770
                     /gene="kgtP"
                     /locus_tag="ACHDOB_000132"
     CDS             33511..34770
                     /gene="kgtP"
                     /locus_tag="ACHDOB_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3325097.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFVIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLYLPKKSQLN"
     gene            complement(34756..35775)
                     /gene="mutY"
                     /locus_tag="ACHDOB_000133"
     CDS             complement(34756..35775)
                     /gene="mutY"
                     /locus_tag="ACHDOB_000133"
                     /EC_number="3.2.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HFN3325098.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLKKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGVYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKGAKELLNVNHAFDHNQALLDVGALVCVSKNAKCGICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMSFVGEFKHGYTKYKLNIKVYHQILNNENKNYEFKTLKELESTALSALSLNAL
                     KLIKL"
     gene            35848..36600
                     /locus_tag="ACHDOB_000134"
     CDS             35848..36600
                     /locus_tag="ACHDOB_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325099.1"
                     /translation="MLAFFKGLGIGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEIANTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDAILECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNTNVNIAPR
                     MLNAKSDNIELSSPIISEKEQILSAKALFICK"
     gene            36672..36746
                     /locus_tag="ACHDOB_000135"
     tRNA            36672..36746
                     /locus_tag="ACHDOB_000135"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:36704..36706,aa:Gly,seq:gcc)
     gene            36756..36844
                     /locus_tag="ACHDOB_000136"
     tRNA            36756..36844
                     /locus_tag="ACHDOB_000136"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:36790..36792,aa:Leu,seq:taa)
     gene            36863..36936
                     /locus_tag="ACHDOB_000137"
     tRNA            36863..36936
                     /locus_tag="ACHDOB_000137"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:36895..36897,aa:Cys,seq:gca)
     gene            36958..37045
                     /locus_tag="ACHDOB_000138"
     tRNA            36958..37045
                     /locus_tag="ACHDOB_000138"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:36992..36994,aa:Ser,seq:tga)
     gene            37250..38260
                     /gene="ribD"
                     /locus_tag="ACHDOB_000139"
     CDS             37250..38260
                     /gene="ribD"
                     /locus_tag="ACHDOB_000139"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HFN3325100.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     GKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKIASGGAEFLKKQGIEIEFDI
                     LKEEGKKLLKPFLKWQKEQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            38241..38762
                     /locus_tag="ACHDOB_000140"
     CDS             38241..38762
                     /locus_tag="ACHDOB_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325101.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTKNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLVFLMICLLLLVMGVINLGLLFKQIRILKSFSKEEMK
                     EFLSQRMKKYTKV"
     gene            complement(38770..40134)
                     /gene="sdaA"
                     /locus_tag="ACHDOB_000141"
     CDS             complement(38770..40134)
                     /gene="sdaA"
                     /locus_tag="ACHDOB_000141"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HFN3325102.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLC
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAQLEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(40149..41399)
                     /gene="sdaC"
                     /locus_tag="ACHDOB_000142"
     CDS             complement(40149..41399)
                     /gene="sdaC"
                     /locus_tag="ACHDOB_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transport family protein"
                     /protein_id="HFN3325103.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNSSLFTNVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGDYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGKIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFILVMGIVAISAAIHDLL"
BASE COUNT        15174 a         6342 c         6615 g        13324 t
ORIGIN      
        1 gttttaaagt cttaatttta attgaataaa attattattt gtattataat cgtaataatt
       61 tttgtcatat aaatgtaagg agataacatg gaacaaaatc gtagagattt tttaaaatgg
      121 agttctttgt ttggcagctt aaccttaagt ccgataaatt taagcgcaaa tttattaaaa
      181 actccaccat taatcagcaa atgggctgga tgtaatgtaa attgtggaac aaaatgtcct
      241 gtaaaagtgc atactcaaga tggaattatt aaatatgtca gtactgataa tgaaggtgat
      301 gatagctttg ataatcgtca agcaagagcc tgtattagag gtagaagctc aagatataaa
      361 gtttacaacg caaatcgcct aaaaagacca ttaaaaagag tgggaaaaag gggtgaaggt
      421 aaatttatgc ctatttcttg ggaacaagct tttgatgaaa tttctgccaa aatgcaagaa
      481 attaaagaaa aatacggcaa tgaagccttt tatataaatt atgcaacagg aacaacagga
      541 acaataatca atcgctgtac acaaggtcca tgggctagac ttttaagtct ttatggtggt
      601 tattaaatta tcataattct tattctacgg ctcaaatttc aaacgcaatg aattttttct
      661 atggtggatc tcctgctagc gatatataca ctttacgctc tgcaaaatta gctatatttt
      721 ttggagcaaa tcatgttgaa actagaatgg gaggtggtgg agtgggctat gcttatcaaa
      781 aagccttaga agaaagtgga tgtaaaataa ttcacattga cccaagatat aatgattcta
      841 tgatagggca ttgtgatgag tggataccta tagcaccagg aaccgatgca gctttgattg
      901 ctgcactaac ttatgtgatg ataaaagaag atttacttga tagaactttt cttgataaat
      961 acaccatagg ctttagcgaa aatactctgc cacaagatgc agccaaaaac tcaagctatg
     1021 aaagctatgt tttaggacta aacgatggag tagaaaaaac tcctgattgg gctagcaaga
     1081 ttacaaaaat tccagcacgc cgcatagttc aacttgcaag agaaattgcc accataaagc
     1141 cttgttttat agaacaaggt tggggagtgc aaagacattc aaatggagaa caaaatgcaa
     1201 gggcgatagc aactctagct tgtattacag gaaatattgg catagaaggg acaaatacag
     1261 gatgtcgaac agggtcaagt aaaacatatg atataatggg tatgcctttt aaaaatccaa
     1321 taaaagattc tattccttgt tttttattta cagacgctat ttatcgcgga aaagaaatga
     1381 cagatattag tgatggggtg cgtggtacaa cacaattaaa acaaaatatc aaatttattt
     1441 tcaatacagc aggaaattgt cttacaaatc agcacagcac cattaaagaa gtgcatgata
     1501 ttttaagcga tgagaattta tgtgagtgta tagtagatgt taatgtaact agaactcctt
     1561 caaataacta cgcagattat atcttacctg atgcaactat gctagagcaa gaagatttta
     1621 taagacctag cgcaggatat tatagcaata aaccttatat tatttattgt caaaaagcta
     1681 tcgagccagt tggtgaagca aaacctattt atgaaatgtg tcttgaactt gctaaaagac
     1741 ttggcataga aaaagaattt agcgaaggaa gaacacaaaa agattggcta aaataccttt
     1801 atgaagaaag tatgaaaaaa aatccacttt tgcctagttt tgaagaaatg tgtgaaaaag
     1861 gacttgtaaa atttgagcct gtaaaacctg tagtggcatt acaaagtttt ataaaagatc
     1921 ctatcaataa tcctttaaaa actcctagcg gaaagataga aatttatagc acaaaactcg
     1981 cacaaatgca aaaaacttgg aaattaaaag aaggacaaca aatagtgcct attcctgttt
     2041 ttgaaagcca aagagaaggg attttggatt cattaaaaca aaagtatcct ttgcaatttt
     2101 ttggctatca ctacaaaggt agaacgcatt ctagcttttg ggaaattcca caaattagag
     2161 aagctaatcc gcaagaaatt tggataaata ccatagatgc agagcaaaga agtatcaaaa
     2221 cgggcgatgt ggtgcaagta agaaatgact taggaatcat acaaggcata gcaaaagtta
     2281 ctccaaaaat cataccaggt tgtgcagtaa ccccacaagg tgcatgggca aaatatgaaa
     2341 atggtatcga tgttggaact tgtgtgaatt ctttggcaag tatagtgcca actgctattt
     2401 ctaaaggaaa tggacaacat tctattttag ttgaaattgc aaaagtttaa ggagaaaaag
     2461 atgaaattag aagaaaattc acaatttggt tttatgctag atcaaagcaa atgcgtaggc
     2521 tgtaggactt gctcactttc ttgcaaggat tataaaaaca tgcctgtggg ggttaatttt
     2581 cgccgtgtgt ttgagactga agggggaaat tggacctgta aagaagatgg aagttttgag
     2641 caaagtgttt ttgcttacta cacctctatt tcttgcaatc attgttctaa tccatcttgc
     2701 cttaaagctt gtccaaccgg tgcaacaatg aaaataaaat ggggaatagt agcaatcgat
     2761 gatagtatgt gtataggctg caaagcttgt gctatggcat gtccttatgg cgcacctcaa
     2821 tttaaccatg aaagtggtca tatgagcaaa tgcgatgggt gttatgagag attaaaagaa
     2881 ggtaaaaatc caatttgcgt ggactcttgt ccttttagag cattaaaagc aggcgatata
     2941 acaaaactga gagaagaaca tggaaattta gcctctatca cacctttacc tgatgcttct
     3001 atcacgcatc caaatttatg tatagtgcct gaaaaacata gtttgccttc aggtaataaa
     3061 agtgcgattt ttcatctacc tcaaaactac caaggagtta aaaatgacat catttaatca
     3121 cattttaagc gaaatgcctt tggtattatt tactatttta gcacaagctg taattggact
     3181 tagtttggtt tatgcacctg catttataaa tggttacaaa aattatgcaa atttaaagtc
     3241 ttttggatta gccttaggaa ttgcaatgat ggttgctttt atcccttcat tttttcattt
     3301 aaatgatatt acacacattt ttaatgtatt aaatagaatg ggtgtttttt atgcaaacaa
     3361 tgagtggcat ataggctgga tgaataatga aattttattt gtatctcttg tatgtgcttt
     3421 gggctttttg ctttatctaa aaacttcaaa ttgggtgttt tatcttacgc taatatgtgg
     3481 aattttagga cttttcttta tgagtggagc ttatggctcc atgcaagaaa gcgtacctac
     3541 ttgggatttt aagatcactt tgctttattt ttttgctagt gctatatttt taggtgctat
     3601 tgtttattat tgtttttttg aaaatagcga acatgaaaga aaaatgtcat tttttacagg
     3661 acttataggc atagggcttt taagcactgc tatagtttta caaaccctac atgtaggaca
     3721 aacttggatt atggggcttg taaatccttt tgaactttta ggtggaacct atgattggtt
     3781 tatatcgctt tcttttgcat tcttaggact tgggattgtt acttggtatt tgcataatta
     3841 tttacatgaa aaatttaaaa gtaaattttt tgcttatttt gccctacttt gtgcattttt
     3901 aggggtgttt accactagaa tgctatttta tggacttata agtactcaaa tcatgttggg
     3961 acattcttaa tgcaaaaatt ggcaatagat atatttatca attttttgca aaatccacct
     4021 aatcattttt tgctagaaaa acttaaaaaa gaagaattct ggcaaaattg gtttttaaaa
     4081 aataatagca aattacaatg caccgcttta aagcttttat catcttcaaa cgaagatgat
     4141 aaattaatag caagtgattt tacatctttg tttttaagcg atgttgatta tgtaaaagca
     4201 ccgccttttg cttcttttta tcttgatgaa aataaagaaa tttattcaga taattctgat
     4261 aaagttaagc aaatttttgc gcaaaataac tttttttctt tttttaatga agaacctgca
     4321 gatagcttga taaatgaatt attatttatt agttttttaa tcaaaaaaca agatgatata
     4381 attttgcaaa aattcttaaa agaagaattt tttacttggt ttaacatgtg gagttttgat
     4441 gttatcaata aagctaaaac acatttttat aaagcattaa caatgttaat gcaagacttt
     4501 ttcaatcaac taaatacaaa attttaacac aagtcaattt ttttctcctt tttaagatat
     4561 ataatatctc ttttacatta aaaaggagaa attatgacaa aagaacaaat acaaatcatc
     4621 aaagattgtg tgcctatttt gcaaaaaaat ggagtagatt taaccaatga gttttataaa
     4681 ataatgttta atgattatcc tgaggtaaaa cctatgttta atatggaaaa acaaatttca
     4741 ggagaacaac caaaagcttt agcgatggcg attttaatgg cagctaaaaa tatagaaaat
     4801 ttagaaaata tgagaaactt tgttgataaa gttgctataa ctcatgttaa tttaggggtt
     4861 aaagaagagc attatcctat agttggagct tgccttttaa aagccattaa aaatctttta
     4921 aatcctgatg aagccactct taaagcttgg gaagttgctt atggaaaaat tgctgaattt
     4981 tatatcgata tagaaaaaaa gctctatgat aaataatata agcccatttt gggctttaat
     5041 caaatttttc tactaaattt ttagctaatt cctttatatt ctcacccttt aattcgctga
     5101 tttcaccatt ttgagccaag aaaattctat cagcactatc aaaatatgca tcatcatgtg
     5161 tgatagcaaa gattgtttta ccttgctctt ttagcaaagg taaaagtttt ttataaaaaa
     5221 atcttctaaa aacaggatct tgatcagccg cccattcatc aagcactaaa atatcccttt
     5281 cttcaagcaa ggctataagc atagctaaac gctttttttg ccctgtagaa agtttggtta
     5341 aggtcagttc attatctttg acacttgttt tatttttaag ttctaaaaac tccaaccaaa
     5401 aagcaatttt ttcttcgctt gcaaaatttt ctttatttaa ggttttagta aaaagatgaa
     5461 aatcgctaaa aacagcagaa ataagagatc tatactcatc tacattttta tcatctataa
     5521 gcgtatcatc aacataaatt ccgcctttgc ttggcttaaa aagtcctgtc aaaagcatac
     5581 aaaaagtgga tttaccactt ccatttttac ctattaaaaa taccaattca ccttttttaa
     5641 gttctatatt tacaggattt aaatgaaaat tttcttcata agcaaattga gtatttctaa
     5701 aagaaatttt tttccattca ctgatataat gtgttttttt aaaaccttct atataatcat
     5761 ctaattccaa ttttgcgatc ttatccaaag cgatttttgc caaaagcaaa gtaggaaaag
     5821 atcctatcat agatactaaa ggggttcgta aaaacaaaat agaaagagct atagttgtag
     5881 catctgcaac acttgcccat tcaaatttta aagctaagta aaactctaca cccactaaag
     5941 ccaaaagagt tacatttgtc cagttgtttg agagattgtt aaaaagatta cctaaagtac
     6001 tatttttctt tttcaatctt gcattatttt caaattcatc ttcataataa agcttggctc
     6061 tatcacgatt gatcaaaagt tctttatgtc catctagtat attttggtaa ttattttgca
     6121 aagcatcatc attttccctt gcctttctaa aatactgata tactttcatc atcaaaaaat
     6181 tattagtaat aaaaataacc ataatccata ccacacacaa agcaaaaatt tgtggtgaaa
     6241 gataacataa ataaacacta gtgcataaaa tcaatatact tgattgtaaa aaatcaggca
     6301 atcttaaaag cccaaaagat atatttctca catcacttcc caaagaagct aaaattctag
     6361 ccttacctac tttagccact cttaacaaag gggtatctaa tatctgcttt actacacgcc
     6421 tttgcatttt aaaaataaaa ttttgtccaa aaatactaag tccaagttca actatggtag
     6481 aacttataaa aaatatcaaa agcaaaacaa taaaataaaa aataggaatg ttttgtgcat
     6541 ttttaagcaa ataatcattg ataaaaacaa gagttaaaac tccaacagca cttgtaataa
     6601 aagaaaaaag caaaaaagaa atcaacttta atttattttg tttaagtaat tccataataa
     6661 aaggcattta taaactccaa aatataattt taattataac attttaagag tgattatcaa
     6721 aattttattt tatcttttac tataaaaaca gcacaaatag ccaataacgc taaaaaaatc
     6781 atatatatac tcataccata taaaaatgga ttttcatttt tactcgcgag tgtattaagc
     6841 caaaaaacga gttgcggagt aataccgcct gaaattgcat aagcaatatt ataagaaaaa
     6901 gaaattcctg aaaatcttat tttagctcta aaaacttcac tcattaaaat aggtgcaaac
     6961 acattaattc cacctaaaaa acaaacaatg gaatacaaaa tacacaccaa aaccaaattt
     7021 ttaagctcat ataaagcata aaaatataaa aaagaaaaaa atacaaaagt taaagaaaag
     7081 aaaatgcaaa ttttaaataa accaaattta tctacaagat aacccataaa agccccgcct
     7141 aaagctattc ccaaaattcc taatatctgt aaataacttc cttcaacccc acttaaattt
     7201 aaaatactag gcataaattt aggcattaat aaaacaagca caataacaca acctgttaaa
     7261 acccaagtca tcatcattga tgaaaataaa ttttttacaa tatccttttc tttaaataaa
     7321 tctttaagcg gaaaagaact aagcgatgat tcttttttca tttgtttaaa aacaggagtt
     7381 tcttgcaaaa atctacgcaa ataaatagaa ataatcccaa aaattccacc tacaaaaaaa
     7441 gcaatacgcc atgcataagc agcaatttct tctatgctaa aaaaagcatt aatgattaaa
     7501 aatactatac ttcctaacaa aattcctaaa gccatagctg aatttaaaca gcttaaaaag
     7561 aaagcttttt gtttttcttg acaatgttct cttacaaaaa cccaagctcc aggcaattct
     7621 ccacctatag ctatgccttg aaaaattctt ataagtatca ataaaacagg agctaaaaac
     7681 ccaagagttt cataacctgg aataaaagct aagacaaagg taggaagaac cattagtaaa
     7741 atacttagca taaacatatt tttacgccca aatttatctc caaaatgtgc cataactata
     7801 ccacctaaag gacgtgctaa atatccagct gcaaatgctc cataagtatt taataaagcc
     7861 caaaattcac tcatatcttt aggaaaaaat acattggcta tatattcagc aaaaaataca
     7921 aaaataataa aatcataaaa ttctaaagtt cctcctagtg aagaaagtcc taagatctta
     7981 atttcctttg ttccaaattt taattttctc attgattaat taccttaaat tttaaaaaca
     8041 ttgtttttat tatactacaa tcatttccaa aatattatct aaaaaattta aggataaata
     8101 tatttaattt tataatcact cttttaaaaa ccaatcttta ttttttagaa gaaaaaatca
     8161 caagcaaaag ttcaaatcaa acccatataa tctcacttaa acaatctgat gatgaatttt
     8221 taaatttatt attttctttt ttagtgccac aaagcgatga agataagaat tttatagaaa
     8281 aaactcgcac aaaaatcaaa agaaatgagc ataatattgc tctgataaaa aatccaaatt
     8341 ttaatgcttt aatagacaca gggtttttag atactattga cacattaaaa gaaaaattgc
     8401 atacccacaa aaccgatttt aaagatatca ctcatattat cttaacacgc gcgcatcctg
     8461 atcatatagg aactttaatg agcgaagaaa atctttttcc aaaagctcaa attttaatcg
     8521 ataaaaaaga atatgatttt tggatcaaaa gcgatagaca agaaattaaa aacaccttgc
     8581 ttaaacttaa aaatatagaa tttattaacc actctaaaga tttgatcttt caaaattcag
     8641 gcattaaagc catacctgct tacgggcata ccccaggtca aaatgctatc ataattgacg
     8701 ataaaatagt cttttgggga gatttacttc atctttatga tatacaaatc ccaaaaccta
     8761 aaatcgctat aaaatttgat atagatcaaa atgaggctat acaaacaagg aaaaaactac
     8821 ttaaagaatt taaagaaaga aaactcaaag ttatagggac ttatgtgcct tttatcaaac
     8881 ctaaattttt agattaatta cttaaaaatt actaaaaatt aagtaaaaat tttaataatt
     8941 tttgctaaaa ttatagcctt tttatttcat gaaaggagaa aattttggca aaagatgatg
     9001 taattgaaat tgatggcacc gtacttgaag cattgcctaa tgcaaatttc aaggttgaac
     9061 ttgacaacaa acatgtaatt ttatgtcata ttgcaggaaa aatgcgtatg cattatataa
     9121 gaataatgcc aggtgataaa gtaaaagtag aacttacacc ttatagcctt gataaagggc
     9181 gtataacttt tagatataaa taatctaagt tatttaaaag ctaattttag ataaaattag
     9241 agtttttgcg acaaattaca tcgaactata tgaagaagta tttttaaaat ccaccactta
     9301 ttttgaaaat agttggttat tcataaaacc tgatgtagtc gtaaatcaag tggaattcat
     9361 tcaaggagac gctcatgaaa gtgagaccat cggttaaaaa gatgtgcgac aagtgcaaag
     9421 tagttcgccg taaaggcgtg gttcgcatta tttgcgaaaa tccaaaacat aaacaaagac
     9481 aaggataaac atggctcgta ttgcaggtgt ggatttacca aagaaaaaaa gaattgagta
     9541 tggactaacc tatatttatg gtataggact tttcacttca agaaaaattc tagataaagt
     9601 aggaatttct tatgataaaa gagttcatga gttaagtgaa gatgaagcag cagctatccg
     9661 taaagaaatt caagaaaact atatggttga aggggatttg agaaaacaag ttgctatgga
     9721 tattaaagca cttatggatt taggaagctt tagaggttta agacacagaa aaggcttacc
     9781 agttcgcgga caaaaaacaa aaacaaacgc aagaactaga aaaggtaaga gaaaaactgt
     9841 tggtgcaaaa tcataaggat aaatcatggc aaaaagaaaa atcgtaaaga aaaaagtagt
     9901 taaaaaaaat atagcaaaag gtattgttta tatcagtgcg acttttaaca atactatggt
     9961 tacagtaact gatgaaatgg gaaatgctat cgcttggagt agtgcaggtg gtttaggatt
    10021 taaaggttct aaaaaatcaa ctccttatgc agcacaacaa gcagtagaag acgctttaaa
    10081 taaagcaaaa gaacacggaa ttaaagaagt aggcattaaa gtacaaggac caggaagcgg
    10141 tagagaaact gctgttaaga gtgtaggtgc tatggaagga atcaaagtaa ctttcttaaa
    10201 agatatcact ccattagctc acaatggttg cagaccgcct aagcgtcgtc gtgtctaaga
    10261 tataagaaaa atttaggaga atattatggc aagatataga ggaccagtag aaaaattaga
    10321 aagacgcttt ggtgttagct tagcattaaa aggagaaaga agactagctg gcaaaagtgc
    10381 actagataaa cgcccttatg caccaggaca acacggagca agaaaaggta aaattagtga
    10441 gtatggactt caattaagag aaaaacaaaa agctaaattt atgtatggag taagcgaaaa
    10501 gcaattccgt cgtttatttg ctgaagcagc aagaagagaa ggaaatacag gggtattact
    10561 tatccaactt ttagaacaaa gattagacaa tgtagtatat agaatgggtt ttgctacaac
    10621 acgtcgtttt gcaagacaac ttgtaacaca tggacatgtt ttagtaaatg gtaaaagagt
    10681 ggatattcct agctttagag tagaagcagg tgctaaaatc gaaattatcg aaaaaagcaa
    10741 aaacaatcct caaattacaa gagctatcga acttacagca caaactggaa tcgttgcttg
    10801 ggttgatgtt gaaaaagata aaagatttgg aattttcaca agaaaacctg aaagagaaga
    10861 agttgtcatt ccggttgagg aaagatttat cgttgagctt tactctaagt aataggggct
    10921 aaatatgaga aatattacaa catctgctta tacgccaaca gaatttacaa tagaaaacat
    10981 tagtgatact gtggctaaaa tcagtgcttg gccttttgag atcggctatg gaatcaccct
    11041 agcccatcct ttacgccgtt tactttacac tagcaccata ggatatgctc caactgcgat
    11101 tcatattgat ggcgtagctc atgaatttga tagcatgcgt ggtatgcttg aagatgtagc
    11161 actttttatc attaatctaa aaaaactacg ctttaaaatt aaaggcgaat caaataaaga
    11221 aatagtagaa tttagcttta aaggctcaaa agaaatttac ggcaaagatc taaataatga
    11281 tcaagtagaa gtagtaaata aagacgccta tctagcaaca atcaacgaag atgctgaact
    11341 caaattcaca ttgatcgttg aaaaaggtat tggctatgta ccaagcgaag aaattaaaga
    11401 gcttataaat gatcctaaat ttatagcttt agatgctttc tttacacctg taagagaggc
    11461 aacctatgat attgaaaaag ttttatttga agataatcct gattatgaaa aagtggtttt
    11521 aaccgtaaca actgatggac aaatcactcc aaatgaagct tttcaaaatg ctctagaagc
    11581 tatgtataaa caattatcag tatttgataa aattaccaat gttagaagtg taattaaaaa
    11641 tcaagcaaca agcaatgaac tagaaaatac taaattattg caaaacatta cagatttaaa
    11701 tttaagtgct agaagttata attgtcttga aaaagcagga gtagtttaca taggtgagct
    11761 tgctttgatg agtgtaagtg aacttgcagg gcttaaaaat ttaggtaaaa aatctcttga
    11821 tgaaattaaa aacatcatgg aaagcatagg ttttcctgtg ggaacttcta agcttagcga
    11881 taataaagaa atacttaaaa ataaaatcgc agaattaaaa gcacaaaacg aaggataaag
    11941 aatgagacat aaacatggat atagaaaact tggcagaact tcatctcatc gtgctgcctt
    12001 attaaaaaat ttaactatag ctttagtaaa tagcggaaaa atcgaaacca ctctaccaaa
    12061 agctaaagaa ttaagaggtt atgtagaaag attgattact agagcaagac ttggagattt
    12121 taacgctcat agagcagttt ttgctttatt acaagataaa aacgctacca ataaactagt
    12181 aactgaaatt gctccaaaat tcaaagatcg caatggcgga tatacaagaa tcatcaaaac
    12241 aagaattcgc cgtggtgatg ccgctgaaat ggctttcatc gaatttgtag cttaatcaaa
    12301 tcctagcttt tgctaggatt aatacttcaa ttaaatatcc taaaaataaa aagttttaaa
    12361 taattatttt aaataaaatt aaatttattt attttctaaa acccttgcta aaaattcaac
    12421 tacttatgct aatataagtt tttaattttt aatttcaagg atatgttatg caagaaaaca
    12481 ctcgtttacg cattgcgata caaaaatcag gtagactttc aaaagaatcc atagagcttc
    12541 tttcagaatg tggtgttaaa atgcatatcc atgaacaaag tttgatcgct ttttctacaa
    12601 atttacccat agatatttta cgcgttagag atgatgatat ccctgggctt atttttgatg
    12661 gggttgtaga tttaggcatt ataggggaaa atgttttaga agaaaatgaa cttgaacgcc
    12721 agtctttagg agaaaatcca agctataagc ttttaaaaaa gctagatttt ggatattgcc
    12781 gtctttctct tgccttacct caagaaaata aatttcaaaa tttgaaagat tttgaaggct
    12841 taaggatagc tacttcttat ccacaacttt taaagcgttt tatgaaagaa aatgggatta
    12901 attataaaaa ttgtatgctt acaggttctg ttgaagtagc ccctagggca aatttagccg
    12961 atgcgatttg cgatcttgtt tcaagcgggg caactttaca agcaaacaat cttaaagaag
    13021 ttaaagtcat ttatgaatct cgtgcttgtt tgattcagaa agaaaatgct ttaagtaaag
    13081 aaaaacaagc cttagtggat aaaattatgt tgcgtgtagc aggagtaatg caagcaagag
    13141 aatctaaata cattatgctt catgctccaa aagaaaagct tgataaaatt caagccctac
    13201 ttccaggagt tgaaagaccg actatcttac ctttagcaca cgatgaaaaa aatgtagctt
    13261 tacatatggt aagtaaagaa aatctttttt gggaaaccat ggaggcttta aaagaagaag
    13321 gtgcgagttc gattttagtt ctgcctatag aaaaaatgtt aaagtgagta aaaaatgcaa
    13381 attttagtat atgataattt ggatgaaaaa caaaaagaag aagcgttaaa acgccctgct
    13441 ataaatgcga aagatgaaat ttcaaaaata gtaagttcta tcattaaaga agtgcaagaa
    13501 aaaggcgatg aagctttgat agaacaagct ttgaaatttg ataaggctga aatttcaaag
    13561 attaaaatca ctcaaaaaga aatcactcaa gcaagcaatc gtttagataa agatttacaa
    13621 gaagctattt tagtggctta tgaaaatatc aaaaaatttc acgaagccca aatcccacat
    13681 gaaatcgctc ttgaaactac aaaaggcgtt aaatgtgaag ttttaacacg ccctatagaa
    13741 aaagtaggac tttacatacc agggggtttg gcacctttgt tttcaacggt tttaatgcta
    13801 gctattcctg caaaaattgc aggttgtgaa aaaatcgttt tagcaagtcc tgcaaaaatc
    13861 aatgatgctg tgcttttttg tgctaagctt tgtggcgtgg atgaaattta tcaaatgggc
    13921 ggtgcaggag ctatagcagc tttggcttac ggtacccaaa gtgttttaaa ggtggataaa
    13981 atttttggcc caggaaatgc ctttgtaacc gaagcaaaac gccaagtaag tagcgatata
    14041 aacggagcga ctattgatat gcaagcagga cctagtgaag ttttagtaat agctgatgat
    14101 ttggctaatg aaaaatttgt agctagtgat ttgctttcac aagctgaaca tggtgcagat
    14161 tctcaagtga ttttggtgtg tttaagtcaa gattttgcta aaaaaacaag cgatgaagtc
    14221 caaagtcaat tagaattttt acctcgcaaa gaacttgcaa gcaaaagcat tgctaattca
    14281 cgcattatca tagctaaaga tttaaatcaa gccttagaaa tttcaaatct ttatgcccct
    14341 gaacatttga tcatacaaac tcaaaatcca cgagaacttt taaaaggtgt aaaacacgca
    14401 ggatcggtat ttttaggagc ttattcccca gagtctatgg gtgattatgc aagtgggaca
    14461 aatcatgttt tacctactta tggacttact aaaacgcatt ctagtttagg tttggcagat
    14521 tttagtaaaa gaatgaccgt tcaagaatta agtaaagaag gctttttagc tttgggtaaa
    14581 agtgttgaaa ttttagcaca aaatgagcat ttagacgcac acaaaaatgc agtaactttt
    14641 cgtttagaga gcttaaaatg agtcaaaaaa tcctttttat agatagagac ggcactttaa
    14701 tagaggagcc aaaaagcgat tttcaaatcg atactcttga aaaattgcgt tttgaaaaag
    14761 atgttattcc tactctttta aaattaaaaa attttggatt taaatttgtc atggtaagca
    14821 atcaagatgg tcttggaacg ccaagttttc caaaggaaaa ttttgaaatc gctcatgaaa
    14881 aaatgcttga tattttaaaa agttgcggta tagaatttca agatattttt atttgtccgc
    14941 attttgaaaa tgaaaattgt gcttgtagaa aacctaaaac cgctatgtta gaagagtata
    15001 tcaaacacga actttacgat aaagaacaaa gttttgttat cggagatcgt gagagtgata
    15061 tgatcttagc ttcaaattta ggcgtgcgtg gtttaaaata cggcgaactt tcttggaaag
    15121 aaatagaaaa tgaaatttta agttctttta gaagtgcgag ttatcaaaga actactaaag
    15181 aaacagatat aaaagtaaaa gtgtgcttaa atgggggtaa gattagcatt aaaacaggca
    15241 ttgatttttt tgatcacatg ttagagcaaa tcgctgtaca tggaggtata gggcttgaaa
    15301 tttcttgcaa aggggattta gaaatcgatg agcatcatag cgttgaagat gtagccttag
    15361 cacttggagc ttgtatcaaa aaagccttag gggataaaat cggcattgca agatatggtt
    15421 ttgctttacc tatggatgag tgtttggcaa gttgtgcgat ggatttttgc aatcgtcctc
    15481 atttagtcta taaagccaaa tttaaaaaat ctcatttagg ggctttaagc acagaaatga
    15541 tcgagcactt tttttattct ttaagctatg ctatgggtat aagtttacat ttaaaagtta
    15601 aaggcaaaaa cgatcatcat aaagccgaag ggctttttaa agcctttgca aaagctttga
    15661 aaatggcagt gaaaatagaa agtgaaaatt tagccagctc taaaggagtg atatgaaaat
    15721 catcatcatc gatacagcct gtgcgaattt agcatctttg aaattttgtc tggatagatt
    15781 aggttttaat gcaactatca gtagggattt aaaagaactt gaaagtgcgg ataagctttt
    15841 tttacctgga gtgggtaccg caaaagaagc gatgaaaaat ttaaaacaat ttaatcttat
    15901 taattttatt aaaaatacca aaaaaccttt gcttggtatt tgtttaggta tgcaaatttt
    15961 aggaaatttt tccgaagaat taaatcaaga aactttaaaa cttatagatt ttacaaccca
    16021 aaaatttaaa gttaaagaag gctttacttt tccacatatg ggatggaatc aagttcatag
    16081 ctctcatgct ttgtttaaag gtttagaagg ggcttatttt tattttgtgc atagttattg
    16141 tgtaggactt ggggaataca ctatagcaga ttgtgagtat tcgcaaaaat ttagcgcaag
    16201 tgtaatgaaa gataattttt acggggtgca atttcaccct gaaagaagca gtgaagcggg
    16261 ggaaatttta atttcaaatt ttattaagga tataggatga ctcaaatcat acccgcactc
    16321 gatcttatag atggcgaagt ggtgcgtctt gtaaaagggg attatgaaca aaaaaaagta
    16381 tacaaataca atcccttaaa gaaattcaaa gaatacgaaa aagcaggagc gaaagaactt
    16441 catcttgtag atcttacagg tgcaaaagat cctagcaaaa gacaacttgc tttgatagaa
    16501 aaattagcca aagaagtcag tgtcaatttg caagtaggtg gaggtatacg ctctaaagca
    16561 gaagttagag ctttgcttga ttgtggagta aaaaaagtag ttataggatc tatggcaatt
    16621 aaagatgcga ctttatgtct tgaaatttta aaagaatttg gtagtgaagc tatagtttta
    16681 gccttagata cgattttaaa agaagattat gttgtggctg taaatgcttg gcaagaagca
    16741 agcgataaaa agcttatgga agttttagat ttttatagca ataaaggctt aaaacacata
    16801 ctttgcacag atatttcaaa agatggcacc atgcaaggag taaatgcaag actttataaa
    16861 cttatccatg aaatttttcc tcatatttgc attcaggcaa gtggtggagt agcaagctta
    16921 aaagaccttg aaaacttaaa aggaatttgc agtggggtta tcgtaggaaa agctttatta
    16981 gacggagttt ttagtgtaga agaagggata agatgtctag caaattaagt tacaaagaac
    17041 ttgctttaga aattttaaaa caaagcgata agcctttaag tgctaatgaa atttggcaaa
    17101 aagctcttga aaaaggctta gataaaaagc tttctagtat aggacaaact ccaattgcta
    17161 ctttaggggc taggatatat gttgatataa aagaattgca acacaattct ttatttatca
    17221 aagcttccca aaaacccaga actttttggt taaaagaaag agaaaatgaa cttttaaagc
    17281 ttgataataa aaatgaaatt accaatgaaa aacaagaaaa aaataaattt catgaaagag
    17341 atttacaccc cttgcttgta aaatttttat atgaaaattt agattttaat ttaaattgca
    17401 aaacaattta ccacgaacaa agcaaaaagg gtaagggcgg ggaagataag tggaattatc
    17461 ctgatattgt aggggtttat tttccttacg atgattatga aaaagaaacc ataacacttt
    17521 tagaaaatat caaacaaaat agttataagc ttttttcttt tgaacttaaa attgctttaa
    17581 atttttcaaa tttaaaagaa tgttattttc aagctgtaag taattctagc tgggcaaatg
    17641 aaggctattt ggttgtttta caagaaattg atagcgaagt tttaagcgag ttaagacgct
    17701 taaatcaaag ttttggcata ggagtgataa aacttgaaaa agatatttca aattctcaaa
    17761 ttttacttag tgcaaaagaa aaagaacttg atattcaaac actaaatatg ctgattaata
    17821 aaaatccaaa ttttaaagaa tttattgatg atataaacaa acaaattaaa gtgggcaaag
    17881 aagcaaaaat tcaagctaat tttgatgaaa ttaaaagcga tgaagaaatg gaaaaatatc
    17941 ttaaagaaaa atgtattttg gagaaataaa tgcttacaaa acgcataatt gcatgtttag
    18001 atgtcaaaga tggcagagta gtaaaaggaa cacaatttaa aaaccataaa gatatgggag
    18061 atatcataga acttgctagg tattattctc aaaatggtat tgatgaactt gttttttacg
    18121 atattgctgc aagcgctaga aaagaacgca tatcaagaga atgggtaagt gaagtagcaa
    18181 aaaatatcaa tattcctttt tgtgttgcag ggggtattaa aagcgaagaa gatgcggctg
    18241 aacttttagc taatggggca gataaaattt ctatcaattc tcctgcttta aatgatccaa
    18301 gcctaatcac acgccttgct aaaagctttg gcgtgcaatg cgtagtagta gggattgata
    18361 gtttcaaaga tgaaaatgga aatttaaaag tatttcaata cacaggcgat gaaaaaacaa
    18421 gcaaaaatag tggaaaaagc actttagaat gggttaaaga agtgcaagat ctaggcgcag
    18481 gtgaaattgt tttaaatatg atgaatcaag atggtgttaa aaatggctat gatttagaac
    18541 aattagaagc tgtatataaa atttgtaaag tacctttgat cgcaagtggg ggagcaggaa
    18601 aaatagagca ttttttagaa gcttttaaac taggtataga tggggcctta gctgcttctg
    18661 tttttcatca aaaacttata gacattaaag aattaaaaat ttatcttaaa aatcaaggct
    18721 taagtataag gatataatat gcaaaatttc aaagaactta atgaaaaaat tgcttggcaa
    18781 aaagtggatc atcttttacc tgtcatcgtc caagatgcaa aaacttgtga agttttaatg
    18841 ctaggcttta tgaataatga agccttagaa aaaagcttag aaagtggcaa agtagtcttt
    18901 ttttcacgca caaaacagcg tctttggatg aagggtgaaa aaagtggaaa tttcttaaat
    18961 atcgtagatt taagcttaga ttgcgataat gacacgcttt taattttagc aaatcctgta
    19021 gggcctactt gtcatacggg cgatatttct tgttttgaaa aaatttctaa aaatgcggat
    19081 tttgtttttc tagccagact tgaaaagctt attaatgcac gcaaaaatgc cgatgaaaat
    19141 acttcttata cagcaaaact tttcaaaagt ggtacaaaac gcatcgcaca aaaagttggt
    19201 gaagaaggtg tagaaacagc tttagcagcg acagtaaaag ataaagaaga gcttatttgt
    19261 gaagcagcgg atttaatgta tcatttaagt gttttacttg cagatgcaaa tcttagtttc
    19321 tcagatgtga tttcaaagtt gaaagaaaga cataaagctt aaagctttat gtaaataaat
    19381 ttatatcaat gcaaggcttc gttaagtttg actgcttttt tatttaaagc tactatcata
    19441 gcaccgctta tagaatcttg acggaaatgt agcccattta aacctttaag ctctaagcct
    19501 ttgtaaattt ctttatcaaa attaaaataa ggattaagtt tagcaagctc ctcagcatct
    19561 ttgagtaaaa atttcgttcc ttctagcact gcaatacctg catcaactat acaattatcc
    19621 cctaaaggaa ttcctgtcac tgaattagcc cctaaaagac aagccttacc tacgcttata
    19681 gcattgccac ttgttccact taaaacacct aaaatcgaag ctccgccacc tacatcagaa
    19741 ccttctccta ctatagcact cgaactaata cgcccttcaa ccatacaagc tcctgttgta
    19801 cctgcattaa aattcacata acttgcccct ggcatgatgg ttgttcctgc tgctaaagat
    19861 gcacccattc ttactttgga actttctaaa attcttgtat tatcctcagg gataatatgc
    19921 gctaaaaatc ttggaaattt atcaacaaaa tcgatttttg gatattgatt gctcattttt
    19981 aaacgcattt catttgctct taaatactca agctcgatag gtttatcatc gctccaagct
    20041 acattgctta aaagtccaaa agctccattt agattgatac ttcttaaagg tactttttta
    20101 gtagaaagca aataaagttt tagataaaca ctttctacac ttaaaggttc tttatcttca
    20161 aaaagacaaa caaaagcaaa ctcatcgtct ttaaatttat ctttgataat ctttaataaa
    20221 tcaatatttt gatgcccttc ttcttctaaa aaaggtttaa aacaagaaag cgcaaaatca
    20281 atatcttcta attttaaagt ttgcacaaac tcactcgcat taaaatcaat ctccacaccc
    20341 ctttgcataa aagcttcaag catgattgcc gctgagccaa aattttgctc ataattaatc
    20401 aaagcaaaac ttgcttgtaa gattttattt ttatttaact gtcctctatc aagccttgct
    20461 ataccaaaag ctttaggttt tttatagcca cttttttgct caatttgttt gattaaaagt
    20521 aaaaaatctt ctttggtatt aatcattttc ttttccttat ccacttaatt tttaatgcga
    20581 acacgcactt tttccattca tcacaggttg tatagcagaa ttatccgcac cgccttcatt
    20641 gttaatcttt tctataaagc cccaaatttt ttcagctgct gttaaataac gctttgaact
    20701 cacactttca gggtgataaa aactcacagg cttgccttca tctccacctt ctcttactat
    20761 catttctata ggaatttgtg ctaaaacttc acttttatag gcttttgcca tatcctcagc
    20821 cgttcctttg ccaaaaatat catactcttt accattatca ggacataaaa atccactcat
    20881 attttcaatc acacccgcta taggaatgtg aagtttatta aacatatcta aagctctttt
    20941 actatcgtct aaagatacgg tttgaggtgt acttacacaa actcctgcag taataggaat
    21001 actttgtgca gaagtaattt gcgcatcgcc tgttcctgga ggcatatcca aaaacaatac
    21061 atcaagttca ggccaaatca catcagctaa aagctgctcg attgctttca taatcatagc
    21121 tccacgccac ataagacctt gaccctcttc gatcaaaacc cccatactca tcatataaac
    21181 accatgagtt aaaataggct ttaatctctg ccctactact tcaggctgag ttttggtttc
    21241 gcctagcatt cttggaatat ttggcccata aatatctgca tctaaaatcc ctactctttt
    21301 tcccatttta gccatggaaa ttgctaaatt tactgtagtt gtagatttgc ccacaccacc
    21361 ttttccactt gaaaccatga taaaattttt tacttgtgga gcgatatttt ttccacttct
    21421 tgaattgctt ttttcttcag gaatttttgg agtaatgata ttaagttcaa tattttttaa
    21481 agccaaactc gataaagctt cagtggcatt tttacgaatt tcattagcta cttcaggatt
    21541 tgctgaaacg atttctatat caataaatac accatcatct tgaattttaa tatcttttac
    21601 aaagttaaaa ctcactatat ccttttcaaa accaggatat tttacagttt ttagcttctc
    21661 taaaatttgt tctttcatgt tttttccttg tcttttaaaa aaatcaattt tactaataaa
    21721 atgataaaat ttagcttttt ataagtgtat aatatggtaa cattataaaa accaacaata
    21781 ttaaaaagag gaatgaaaaa atgagtgaaa ttagcctcat tatgttagca gctggaaatt
    21841 ctactcgttt taacacaaag gtaaaaaaac aatttttacg acttggaaat gaccctcttt
    21901 ggctttatgc aacaaaaaat ttaagctctt tttatccttt taaaaaaata gttgttacct
    21961 ctagtaatat cacttatatg aaaaaattta ctaaaaacta tgaattcata gaaggtggtg
    22021 ataccagagc agaatcctta aaaaaagcct tagagctcat agatagcgaa tttgttatgg
    22081 taagtgatgt agcaagggta ttggtgagta aaaatttgtt tgatcgtttg attgaaaatt
    22141 tagataaagc agattgtatt acccctgctt taaaagttgc agatacaaca ctttttgaca
    22201 atgaagcctt gcaaagagaa aaaatcaaac tcattcaaac cccgcaaatt tctaaaacca
    22261 aattgcttaa aaaagccttg gatcaaaacc tagaatttac agatgatagc acagctatag
    22321 ctgcaatggg tggaaaaatt tggtttgttg aaggtgaaga aaatgcaaga aaactaacct
    22381 ttaaagaaga tcttaaaaag cttgatttgc ctacacctag ctttgaaatt tttactggca
    22441 atggttttga tgtgcatgaa tttggagaga atcgcccttt gcttttagca ggagtgcaaa
    22501 ttcatcctac tatggggctt aaagcacaca gcgatggaga tgttttagct cactctttaa
    22561 ccgatgcgat tttaggtgct gcaggacttg gagatatagg agagctttat cctgatactg
    22621 atatgaaatt taaaaatgcc aactccatgg agcttttaaa acaggcttat gataaagtca
    22681 gagaagtagg ttttgaactc attaatatag acatttgcgt catggcacaa agccctaaac
    22741 ttaaagactt taaacaagct atgcaaagca atatagctca tactttagat ttagatgaat
    22801 ttagaatcaa tgttaaagcc acaacaacgg aaaaattggg ttttattgga agaaaagaag
    22861 gtatggcggt gcttagtagt gtaaatttaa aatattttga ttggacaaga ttatgaaagt
    22921 tttaattatt gaaaatgaaa tttatctagc acaaagcatt agcattaaac taagtgatgc
    22981 tggatatagc tgtgaaatta tcaactcgtt tgatgaatac aatggtgaaa aatactatga
    23041 tattgtactg ctttctacaa atactaataa ttttctaaaa gccgtaggtc agtttaaaca
    23101 tagtattatt attttgctta tttcttatat aagtacagat acagtttcaa atcctttgaa
    23161 attaggtgct agtgattata ttcaaaaacc ctttatgata gaagagctga ttagaaaaat
    23221 aaagcattat caggatttta gaaaactttc aatccttaat aaagcttatc aaagctacat
    23281 caaatcaaga ttagaaacaa tcaaaattcc agagtataat tataaaaaat taaaacttcc
    23341 attgatatta aaatccaaca agcaaagcag tgctgatgct tttgttttta attatgcaaa
    23401 tgaatgtgac attactcttt cttttattga tttaacatct acaaattcag ttgaaaaagt
    23461 tatgaaactt cccacagaaa acaatctctt atttttgagt aattttcaag cattaaaagc
    23521 aacagaaaag gaaaaactcc tagattttat acaaaacaaa aatgttattt tgcataccaa
    23581 ttcaaataca gatgatttaa aaataaactg cattaattta aatgataatg aaaaaaatat
    23641 cgatagcaat gaaattttaa ccatagatga gtatgtaaaa tatgttatta taaattacca
    23701 aaatatattt cctgatactg atctttcaaa aaaattaggc atttcacgta aatctttatg
    23761 ggaaaaaagg aagaaatatg aaatcagcaa gaaaaaataa aaacattacc atagatcaaa
    23821 atgaatttgg catcttgtca cttattaaag aaggtttgct aggtacttgc actcatttaa
    23881 tgaatgaaaa agaagtcaat gaaatcatta aatcaggaaa atttaaagga gaaagttttc
    23941 cctatccctt aagctttgca ccaaaaaatg ctgaagaagc actaaatgat ataaaatctg
    24001 gcgatagaat cgatctcata ctagacgaaa aagtagtagg acatatagat tttaaaagcc
    24061 gatttaaaaa taataaaaat ttttctgata ttttcagtcc taacacttgc tctttggaag
    24121 atatgggaac aacttgtata agtggaaaaa tagaaattta caattctcaa attaaaaaaa
    24181 taaaagaaaa ttttcaacaa atcaaaaaca atcttaatgc acaaaaaatt accgctatag
    24241 tttcaagttt tgatcctttg catcgtgccc atgaaagaat gtttcgttgg actattgata
    24301 aagcagattt agttgtaatt tttcttgtag aatcttttga tgcaaatggg tttgaattcg
    24361 aacttaaaga agcttatttg aaaaaattta ttcaaaacta tcttccaccg gatagaattt
    24421 tcatttttcc attaaaaaat attaatattt ttcacgctca tttaaatcct ggcttagaaa
    24481 gcattatcgc aaaaagtcta ggttgtacca aactagtagt aggacaaaat catacaggac
    24541 ttggaatgtt ttatgatgat aatcaaccaa aaaccatact tgatgatttt tccaaggatt
    24601 atggcataga agtgattgtt ttgcctgaat ttgtattttg cgatcaatgt cgcatgattg
    24661 ttagcacaag atcttgccct catggttgtc atcaccattt gcactataat tctcagtctt
    24721 taaaagattt actaagagcg ggtatcattc ctccagcaat tttcatgcgc aaggaagtat
    24781 ctagcgttat tttaacttct ctttttccaa atagattaaa aaatatgcaa aaaatttata
    24841 atgagctttt tccaactgat ggaattttag aatacaaaaa tgatgaagaa ttttatcaaa
    24901 aacttttaga aattcatcaa atgtcttata tggtgtaaca aaatgcaaaa attattttta
    24961 actttttttt attcaggttc tataaaaaag gcaagtggga cttttggtac tatcgctgct
    25021 ttaatacctg ctttttttat acttaaatat cttgggatta atactttgtt tttactaagt
    25081 attttaattt ttgttgcaag tattcgtgtt atagatgatt atgaaaaaaa aacaggaatt
    25141 cacgatgaca aacacatagt tatcgatgaa gttgctgggg tttttcttgc ttgtgctatt
    25201 gcagcaagtg ttgaaaattc aatagttaat tttattttgg cttttgtttt atttagactc
    25261 tttgacatta caaaaccttc tattattggc aaaatagata aaaaagtcaa aggcggacta
    25321 ggtgtaatgc ttgatgatat gctagcagga ttgtttgctg gacttttaag tgcggtaatt
    25381 tatggatttt tacttaaatt taatttagtt ttttgggata taaatttaaa agatttattt
    25441 tgaaattttg cttaaattaa ttaaatttta aattttattc ttatataatt tagtctttaa
    25501 tttcaaaaaa ggaaaatata aatggcaaac cataaatctg ctgaaaaaag agcaagacaa
    25561 actattaaaa aaacagaaag aaatagattc tatagaacaa gacttaaaaa tataactaaa
    25621 gccgtaagag aagctgcagc aaatggagat aaaaatgctg ctaatgaagc tttaaaagta
    25681 gctaataaaa gcattcatgc tatggtaagt cgcggtttca ttaaaaaaca aactgcttct
    25741 cgccgtgtaa gccgcttagc ccttttagta aataaaatcg cataattttc tatatagttt
    25801 ttaatgttag ctagcaaact agatcctttt ttaaaacgct ttgaagagtt aaattctctt
    25861 cttagcagtt ctgatatact caacgatatc agtaaaatga ctacactctc taaagaacaa
    25921 aaaaatttag aacctatcgt tttaaaagct aaagagtatt taaaaacttt agacaatata
    25981 gaagaaaata aagctttgct aaacgatcca gaacttgggg aacttgcaaa agaagaacta
    26041 aaaactttag aagaattaaa accaaaactt gaagaagaga ttaaaatttt acttcttcct
    26101 aaagatccca atgatgaaag aaatattttt cttgaaattc gtgcaggtac aggtggcgat
    26161 gaggcatctt tatttgtagg agatcttgta aaagcttatg caagatatgc tgaaaatcgc
    26221 ggctataaac ttgagattgt aagctctagc gaaggaagtg taggtggatt taaagaaatc
    26281 atcatgcttg ttaaaggaac aggggcttat tcaagactta aatatgaagg tggaacgcac
    26341 cgtgttcaaa gagttcctca aacagaatcc caaggacgcg tgcatacttc tgctatcacc
    26401 gtggcagtaa tgccagaagt tgatgatata gaaatcgaaa tcaatccaaa cgatcttaaa
    26461 gttgatgtga tgcgttcttc tggacatggt ggacaaagtg taaatactac tgattcagct
    26521 gttcgtatca ctcatatccc tacaggtata gttgtagtca atcaagatgg aaaaagccaa
    26581 cacaaaaata aagaaagtgc gatgaaagtc ctaaaagcaa ggctttatga aatgcaagag
    26641 agtgaaagac tagcaaaaga aagcgaagca agaaaatcac aagtaggaag cggagataga
    26701 agcgaacgca ttcgcactta caattttcca caaaatcgta tcagcgatca tagaataaat
    26761 cttactttat atcgcttaga tgccattatg caagatgggc tttttgatga aatcatagaa
    26821 cctttaatca ctcatcatca agcccaagct ttacaagaac aaaatttata agattttata
    26881 caaattaatg cttatgtggg aatttatgtg gatttccact agcacctaca tgtgcaacat
    26941 ttccattttc tatatcataa gcttgaccaa aaccttttac aaagcgtcct tttttaaatt
    27001 caagctttac tagatgaaaa tcaaacatct tgcgtatagt tttaatgcct ccttctcctc
    27061 cggtttgttt ttcaaactca tcataaattt gatcaaatct ttcacctctc tctaaaaagc
    27121 ttgcatttac tctatagcgc aatcttttgc gaagtataac agaagcagct ttactctcat
    27181 cctctaaaaa cattatttct atattgtttg gatttacttt gatgttgtta aaatgttcac
    27241 ttacttcact tatataaata taatttcccc attgtgtgct tacaaaaggt gcatacgagc
    27301 aaacaacttc tgcatttgca tttaaagttg ccaaagctac agaattaaaa cttagcataa
    27361 attcatttaa ttctttttct acgccactaa aattttgctc gctctttgca ctcatgcaaa
    27421 gggatattat agtatcttta atcgtgtttt catcggcttt tttaggaaat tccactcgta
    27481 aattttcttt atcattgtaa acaagatcca agccattaaa atcaacactt tttagaaaaa
    27541 catcttgcac ttgctcaata ccaccaaatt ttttacaaag atcaactaaa tttgatttat
    27601 gatgatcatt catatgagaa ataatgcttt caaaattcat ttttatcctt tcttgatttt
    27661 aaaataaaat attaaaaaaa atggtatcaa ttatcaaatt aaaaataact taaaatatat
    27721 aaattatcta ttttaacaaa aatttatact aaattaagtt aataaaggat aaatttcgtt
    27781 ctaaattatt atgatataaa ttatcattat ttattttatt taaggagtaa aatttgcacc
    27841 caaataaaaa agcttttaaa ttatctttat ttgcattatt gctaataact aatttaaatg
    27901 cacaagaatc aaatgaagct atcaatctac aaaaagttgt tgttagtgca acaggttttg
    27961 agcaagatgc agactcaaat ttacgcaatg taatcagcat agaaggcaaa gatctgcaaa
    28021 ataaaggtta tgtttcctta gaacaagcct tagaaagaat ttcgggtatt agctttgtaa
    28081 attttggact tggacgcaat atagatatgc gtggacaagg agataaatcc aatatagctg
    28141 taaaagttat gatcgatggg cgtgctatta atgttcttga taattcccat ggtgtaaccc
    28201 cgctagatag tattaattta gataatgtag aacgcataga aatcatacct gggggtggat
    28261 ctgtgcttta tggaagtggt actagagggg gtgtgattaa tatcattaca aaaaaacaaa
    28321 aatcagatgc ttttgctata aatttaaaaa gcagtgctta tgatcatggt ggactaggtg
    28381 gaaatttagg tatcaatggc gccaaacaaa taaatgaaaa tttagctttt agctttgata
    28441 tacaaagttt taaccttgat ggatatcaag aaggttataa tgaaaaaggt tattttatca
    28501 acacaaaaac ctatattgat atcaatgata atagcgattt aactttgggg tatgattatt
    28561 ttaaaagcaa aaataccagc agtggctatc taacaaaagc acaagctcaa agcgatccaa
    28621 cccaaaaagg caatagtgac aatatcacac aaatcaatcg ccctgaaatt tctttggatt
    28681 atcattacta ttttgatgat atatgggaat ttaacctaga agctttttgg caaaatcaaa
    28741 agatcgatta tctaaaagat gaaatttcta tgatgggaac tacagcttat caaaatggaa
    28801 gcggttttga agacacactt acagggataa gtttaaaaaa caaactaaat tatgcaaata
    28861 attcttattt tatttttggt tatgaattta caaaccatga tgcaaaaaga aagagtttgg
    28921 tgtattatag tgttccaggt gtcataaatt atcacaggat gacaacttta atggatatga
    28981 ctaaacaaag tcattctatt tttgctctta attctcataa ttttaatgaa ttttttactt
    29041 tatccggtgg agctagatat gaatttagca cttatgatac cgatagatct tatagaaatg
    29101 aaatgagtat gaacataccc cgacccccat cagactcaac aacccttttt gataccaata
    29161 aaaacaccaa taattttgct tttgaaatca cccctaactt taaatactct gacacaggca
    29221 atctttatct taaatacgaa agaggttttg tttctcctgc acctgctcaa tttgtcaatc
    29281 gcaacaaaac tggtaatgga ataccaccct attattcgtc gaacctaaaa gctgagatct
    29341 ttgatacctt tgaactaggt attgatgatt tttggtggga tttttacggc tttaatctaa
    29401 ctttatttta caccctaagc aaagatgaaa tttcttatct tggaaaccct cattctacta
    29461 gtggatcttg gtggaaatat tataatatag atcaaactcg ccgtttagga gtagaattaa
    29521 gtctgagtca aaatttttta gatgatgatt taatctttag agaaagtcta acttatcttg
    29581 atgctaaaat ttctaaaggt gttaatgacg gcatgagaat tccttatgtt tcaaaaatca
    29641 aagccacagc tgggcttgaa tacgcttgga ataaaaattt ctcaaatttt attgatctaa
    29701 cctatttttc tagagcaaaa gatggtggaa ctatagatga aaatacagga aaaatgtcta
    29761 aaaattcttg gataagggat tattttttaa cagatattgg catgaaatat aattataaaa
    29821 aattacaaat tttagcagga attcgcaatc ttttcgataa aagatactac acctatcaag
    29881 acagtataaa tgatcaatac ctagttggga atggcagaaa ctactatgtt gaatttaaat
    29941 acgcattcta aaattttagt gattataggg cttttggtag cttatataat cgcttctttt
    30001 acagcacttt gcttaggaga tgagaattta aacccaaaag aacttttttc atatatcttt
    30061 agccaagatg aaattttaag acaaatcatc atagatggac gcttaccacg gattataatg
    30121 gcgattttaa tcggtatgct tctagctagt agtggggcta tcactcaaaa tgtattttca
    30181 aatcctatag ccgatcctta tatcataggt atagcttctg cggcaacctt tggagcggtt
    30241 ttggcgtatt tgttaaaatt gaatgattat tattatggaa ttttaggttt tgtttgctct
    30301 gccttttttg ccctaggagt ttttaaaatt tcttctaaag cttctatagc gactttactc
    30361 attatcggca tagcagcttc atctttttta ggagctttta cttctttttt cacttatctt
    30421 ataggcgagg attcttttaa aatagtcgct tggcttatgg gaaatatagg caatgcttct
    30481 tggtttcgtg tgggaatttt aatcttgcct ttaatttttt gtttgtttta tttttacgct
    30541 cataaaaacg aattaaacat acttttaagc ggagatgatg aagctagaaa tctaggggta
    30601 aatgctcaaa aattaaagat aaatttactc attgtctcat ccttggctgt atcttttgcg
    30661 gttgctttta gcggacttat aggctttgtt ggactaatca ttcctcatac tataagactt
    30721 ttgcttaaaa attatgataa tgccttagtt atccctttat gtacagcatt tggaggatta
    30781 tttttactta tttgtgatac tttagcaaga actcttttag cccctgtaca aattccgatt
    30841 ggaattttaa ctgcattttt tggagctcct atttttttat acttggcttt aagtgctagg
    30901 agatttttat aatgctaaaa atacaagatt taagctttgc ttatcaccaa aaagatttac
    30961 taaaaaacat tcatttagaa cttaaaaatc aggcttttat aggaatttta gggccaaatg
    31021 gctcaggtaa aagcactctt ttaaaactta tacttaaaaa tttaagtcca aataaaggag
    31081 aaataagtct ttttaacaca aatatcaaag atttttctct taaagaattt gccaaaattt
    31141 gcggatttgt gcctcaaaaa tcagaattaa acaccccttt aaaagtcatc gatgtgcttt
    31201 taatgagcaa atatgcgaat ttaaaacacg cttttagttc ttattctaaa gaagatattt
    31261 tagaaattaa agaatttgct aaggatttaa gacttgaaaa ttttctagaa agaagcatac
    31321 tttctttaag tgggggtgaa tttcaaagaa tgcttttagc aagagcttta cttaaaaagc
    31381 caaaaattct ttttttagat gaacccactt cagcccttga tttaaactat gctatagagc
    31441 ttttaagcct ttgcgaaaaa ctagttaaag aaaaaaatat agccgttgtt gctatcttgc
    31501 atgatttaaa tttagcttct atgttctgcg ataaaatcct ttttttaaaa gaaggggaga
    31561 taaagtattt tggaacgagt aaagagcttt ttactcaaga aattttaaaa gaaatttatg
    31621 atttaaactg cgagattatt tataaaaatt ctaaacctta tattttagct ttaaaggaga
    31681 aaaaatgaaa aaaattttaa ttattatgag tttattttta atcacactaa atgcaaagga
    31741 acgccttgta gtgcttgatc ctgcaagcat agaaaccctt tttatgctta aggctgaaga
    31801 tcaaatcgta ggcattgcca ctttacaaca ctcaaatatc tatcctaaag atcaaacctc
    31861 aaaacttaca agcgtaggca ctttttcaaa tccttcactt gaaaaaatag tagcattaaa
    31921 accaagtttg gtgattttaa gctcttattc tttaaattta gaagaaggac ttaaaaattt
    31981 tggtatcaaa agtatcaatt taaaagccga gcgtttagaa gatataacaa aaaatatcac
    32041 aaccttaggc caaatcacca aaaaagaaaa agaagcagag tttttaaaac aagaatttac
    32101 ccaaaattta aaaaaattaa gcgataaacc cctaaataaa agtgcgattt atctttattc
    32161 tagcaaccct ttaatggcct ttaatgataa ttctttaata gctgatattt taagacttat
    32221 agggattaaa aatttaagcc cgcaaagtca aatttcaaga cctgttatat cagcagaata
    32281 tatactgaaa caaaatccag acatactcat tcttggaatt aatgctaaaa acaacctttt
    32341 agatacaaat gctttattga aaaataccaa agcagttaaa acaggaagta tttattttaa
    32401 caaagataca catatattat tacgtcttag tcctaagata atagatagaa ttcaagaatt
    32461 taaaacaaag ctagaaaata acaattttta atcacccaat cttgctttaa aaaattcgca
    32521 agtttgacaa agtttttcta tgcgtttatc ttcttcaaaa gcttttttca tcatctttat
    32581 acgcggtgat ttaaaaagct tatcaaagtt attttcaaaa acatttccta agttaatatc
    32641 tgctttagca tccaaacagc aaggcaccaa acttccatca cttaaaatcc caatttgctc
    32701 ttttaaagca tgacattttc cttttttata aaggggttca tcttttaaat ttggccattt
    32761 aaaaagttta ttttgatgaa gcaaaatatg tctttgcaag cgatttttac ttaagtttgt
    32821 atcaatctta acttcaaatt ctttggctaa aaactcataa atttttaaat ttgacttagg
    32881 tgctttaaaa ttagcatcta aattccaaag tcttagattg ataaaagaaa ggcttttttg
    32941 ctctaaatgc tttttgcaaa gttctaaaat aggcttaaaa tactgttcta aagaaatttt
    33001 gctttgactt aaaaaagaca ttaaagaaat attgatttga tggatattct cataccctaa
    33061 caataaagct tgatttttag aatttaaata aaagccactt gtagtgattt caagcttcat
    33121 agcttcactt tttgcgattt ttagataatt ttccaaatta ggtaaaagca aaggatcacc
    33181 caaaagatga aaggtaaaaa gctcagcctt attagaaatt tcatgagcta agttttgaaa
    33241 tttttcttca ctcattaccc cgcgaattcc ttttcgagaa ggacaaaaat cgcattttaa
    33301 accacaaata tcgcttaatt ctatatatat ttttttaaat ttcattatat ttcctagagt
    33361 aaacatttta ccaaaattta tgaaatttat taaaatatgt aacattttta tcgatatttt
    33421 tatctttttt atttctcttc tttattttta aatatattaa acaaaaatca cactatactt
    33481 aaataaaaat ctaaaattaa ggaagggttt atgcaagagc ttactcgcac gaaaaaaatt
    33541 cgctctatta ttgctgcaag tagcggaaat ttagtagagt ggtttgactt ttatatctac
    33601 gcttttacag caacttattt tgctcatact ttttcaactt cagataatcc tgttatccag
    33661 caaatcaatg cctttggggt ttttgcagca gggtttttta tgcgtcctat aggctcttgg
    33721 ctttttggct ctttagctga taaagtaggt cgtaaaaaat ctatggttat atcagtggtt
    33781 ttaatggctt tgggctcttt tatgatagca gccttgccaa gcaaagatac agtgggagat
    33841 cttgctatta tcttactttt aatagcaaga ctcattcaag gtcttagtgt aggcggggag
    33901 tatggcatag cagctactta tctttcagaa cttgctacag aaggaaaacg cggtttttac
    33961 tcatcttttc agtatgtaac cctaataggt ggtcaacttt tggccgttgc aagcattagt
    34021 ataatgtttt tattttttag cattgatgat atgaaagatt atgcttggag aatacttttt
    34081 gtaataggcg gaattttagc actaggctcg ctttttgtaa gaaaaatgat gaatgaaagt
    34141 gctacaaaac ttcaccagca tgaagatcgt ggtactttaa aagcattatg caaatcttgg
    34201 aaaccttttt taatggtact tggggttact tctggaggtt ctttagcttt ttatactatt
    34261 acaacttata ctaaaacttt tatggaaaat acgggtatgg ataaaatgct tgttaataat
    34321 cttttcttag gtgctttatt tatactaatg atcattcaac ctctttttgg atatatagga
    34381 gataaaatag gtcacaaacg atctttaatt gtattttgta ttttggcatt ggtaggaatt
    34441 tatcctattt tttcacttat agccaataac gcacaaaata atccttcttt gacatttatg
    34501 ttggtggtat tattgtttgt tattttaagt ttttatactt cagttgctgg gatttttaaa
    34561 gcaaaacttt ttcctgaaca tgtaagagct ttagggacag gtttgggtta tgctatttca
    34621 aatgctgttt ttggaggatc tgctccttgg gttgctttac aatttaaaaa tgcaggtata
    34681 gaaaatggct tttttatcta tatagctatt tttacaatca tcatgcttat agctacttta
    34741 tatttgccta aaaaatcaca gcttaattaa ttttaacgca tttaaagaaa gtgccgaaag
    34801 tgcggtactt tctaactctt ttaaggtttt aaattcataa tttttatttt cattgtttaa
    34861 aatttgatga taaaccttga tattaagttt atacttagta tagccgtgct taaactcccc
    34921 tacaaaactc atatctttag aaagtttata ctctccttct ttaaaaaaag gaaaattata
    34981 cataccttta taaagcttat cttggctttt ctgtatcgca aattttttat taaattcaaa
    35041 caaaaaaaga tttaaattta aactctcata aagtattttt ttagctcttg gataaagctc
    35101 tgtatgaaat ttgccttgac aaaaatcata caaaggacaa attccacact ttgcattttt
    35161 actcacgcaa accaaagccc ctacatcaag caaagcttgg ttgtgatcaa aagcatgatt
    35221 tacatttaaa agctctttag ctcctttttc aagttctttc atgctaggat tttctaaagc
    35281 aaaaagacga gaaagcacac ggcgtatatt gccatcaaca aaagaaacct tttgatcata
    35341 gccaaaacaa gctatagcac ctgctgtata aactcctatg ccgcttaatt tttttagatc
    35401 ctcaacttct ttgggtaatt tagccccaaa cttatccaca cattctaaag ccgccttttt
    35461 taaatttcta gcacgagtgt agtaaccaag cccttgccaa gcctttaaaa gttcatcttc
    35521 attagcatta gccaaacttt ctaaagtagg aaattttttc aaaaagggga aataaaacct
    35581 ttctaaaact gatttaactt gagtttgctg aagcataatt tcgctgatat aaaccccata
    35641 agctctatca atatgcttta aactttcatc acaattttga ctttgtaaat tacgccaagg
    35701 taaagttttg cgtccatttt tttcatacca aagaagtaaa ttttcttgta gtttttcaag
    35761 ctcttttttt tgcataaatg agagtataac aaaaaatttt aaaatttttt gctaaaatta
    35821 gctcaaatta aattattaag gatatccatg ttagcttttt ttaaaggttt aggtataggt
    35881 tttttatgtt tattactttt tgttgcagga gtagttttta atgtagaatt tttaggcaaa
    35941 aaagactcta atcatgattt atatttttca agaaatatag aagtaagcaa tacgctaaaa
    36001 cccgatattt tatatgcaaa tattaatttt tgggcaaatg aaaatttaag ctcaaaaatc
    36061 acattggata atagcgaaaa agctgaaatc gcaaatactt tcaatcaaat tttagaacgc
    36121 tcaaaaaaag aaaatttttg tagcggagga agtttttctt tagagcctaa tttttcctat
    36181 aaagatggta tacaaactcc aaaaggtcaa agatttgatg caattttaga atgtgaattt
    36241 aaagaaaatc aacttgcaga ttttaacaag cttttaaatg acatcaattc tatcatagct
    36301 aaaaataatt tcatcagcgt ttcaacacca gccatacaaa caaaattttc aaaagataca
    36361 ctaaacaaca acaaagaaaa tctctacaaa gagcttttaa aaacatcata cgaatatgaa
    36421 aaaacttact ctttagatct taataaaact tgtgtattga aaaatttaca agtaaataca
    36481 aatgtcaata tcgcacctag aatgttaaat gcaaaatctg acaatataga actttcatct
    36541 ccaattatca gcgaaaaaga acaaatttta agcgcgaaag ctttatttat ttgcaaataa
    36601 cttaaggcaa aataaactcc ttttaagttt attttgctat acttttatct tcaattcttt
    36661 cagaaattta tgcgggaata gctcaggggt agagcacaac cttgccaagg ttggggtcgc
    36721 gagttcgaat ctcgtttccc gctccataat cacccgcccg ggtggtggaa ttggtagaca
    36781 caagggactt aaaatccctc ggaatttttc ttccgtgccg gttcaagtcc ggcctcgggc
    36841 accacttttt caacattatc agggcgacat agccaagcgg taaggcatgg gcctgcaaag
    36901 ccttgatctc cggttcgaat ccggatgtcg cctccaaaag gcaaaacttt actttatcgg
    36961 gagatggctg agtggtcgaa agcggcggtc ttgaaaaccg ttgagggtca cacctccagg
    37021 ggttcgaatc cctttctccc ggccaccaag actttctagt ttatcaagct tatatcattc
    37081 ctgaaattat aaaggatact acaaatgaaa aataatactt cggtcttact atttttgtta
    37141 tatcctaaaa aacttagaaa aactatggct aatataatta aaaataagaa atacaaatgg
    37201 aaaatttaga atttgttatc ttaaaacaaa aatataaaat tttaaaaata tgtcaaattt
    37261 taaaatacaa ggtaggcaaa tgaaagaatt ttatatgaat ttagccttaa atgaggcttg
    37321 gaaatatcag tttttaacct atccaaatcc ggctgtaggc tgtgtaatct tagataaaaa
    37381 tggaaaaatt ttagccataa aagctcatga aaaagctgga ttagctcatg cggaacttaa
    37441 tgccatagct catgctttta aaagcttaag acctgaaatt tcattgccta aagaagcaaa
    37501 cgccttgcat gagtttattt gcaaaaacca tcaaggtgta tttaaagata gcatagcttt
    37561 tgtcacactt gagccttgct ctcatcaagg aaaaacgcct ccttgtgcaa aactctttag
    37621 cgagctaggt tttaaaaaaa ttttcatcag cgttaaagat gaaaataaaa tcgcaagtgg
    37681 tggggctgaa tttttaaaaa aacaaggcat agagattgaa tttgacatac ttaaagaaga
    37741 aggaaaaaaa cttttaaaac cttttttaaa atggcaaaaa gagcaattta aactttttaa
    37801 attagccctt tctatgaatg gctcgccttt tggcaaaatc gtaagcaatg agctaagtcg
    37861 cacttatgca cataaaatta gagcggtgat tgatttgctt gtagtcggtg gagaaaccat
    37921 aagaaaagat catcctatac tagatgctag gctttgcaaa gcaaaagcgc ctaatctttg
    37981 tatcttaagc cgtcaaaata tagataattt tgataaaaat atccctttat ttaaagttcc
    38041 aaaccgccaa atttataccc aaattccaag tgaagctaaa tttttaatgt atgagggtgg
    38101 agaaaatttt ctcaaaacct ttaaagatga aatagatatg tttttgattt tccaaagttc
    38161 aagtttaaat gatgaaaaaa atgttacaat acctttaaat ttcaagccac tttataggaa
    38221 ttttttaggg agtgatactt atggcattta tgaactttag tggatttttt tatgcgagaa
    38281 atgatttaag attatttaaa atagaaaaga aaaatgaatt aaaatccttt ttttacaaag
    38341 actacacctt atcaagctac aaagatgctt taaatttaaa caatgaaatc tttttttatc
    38401 aaagtttaaa agaaggctta tttaaagaaa atgatgaaat tttagtttca aatttgggta
    38461 aaaagatcat actttttaga aatttcacta aaaattgcga taattttaat gaagcaaaat
    38521 taaaacaaat attgctttta ttttttttat tattagcgag tgtatttttt gcaagtttgg
    38581 ctatgattaa tgaatttgga gccatagatc ttgttttttt aatgatttgc ttattgcttt
    38641 tagtgatggg agtgatcaat cttggcttgc tttttaagca aattcgtatt cttaaaagtt
    38701 tttccaaaga agaaatgaaa gaatttttaa gtcaaagaat gaaaaaatac actaaagtgt
    38761 aaaaacactt tagcatactg tttttaaatt tgtagcaaga ccacctaaag aagtttcttt
    38821 gtatttataa ttcatatctt ttcctgtttc atacatggtt tctataacct catcaaggct
    38881 taccatagga gtagatttgc gtgtcattgc cattctagca gcacttatag ccttaatagc
    38941 tccaaaggca tttctttcta tgcaaggaat ttgcacaagt cctgcaactg gatcgcaagt
    39001 taaacctaga tgatgttcca ttgccatttc agcagcgttg catgctttaa aagcattagc
    39061 ccctaaaact gttgccatag ccgcagctgc catcgaacta gcactaccaa tttctgcttg
    39121 acaacctgct tctgctccgc taatacttgc atttttctta taaaaagaac ctataagcat
    39181 tgctgttaat aaaaactcta tagccttttc atcactaaaa cctatagtat gatttttaag
    39241 ataaagcata acagcaggga taacagcaca tgctccattt gttggcgcgg ttacaacttt
    39301 tgctccgcta gcattttctt cagcaatcgc aatagcatat aaagaaataa aatctataat
    39361 gcccatagga tcagctgtca tcgccactct ttctttaagt cctttggctc tacgctttaa
    39421 atgaagtttt ccgggcaaat aatcttcatt tggatgcgta ccattataat acacttcttg
    39481 cattacttcc caaatttcaa gacaataagc acgaatttcc tctttagtgt gaaattgcaa
    39541 ttcataacga taagaaagct ctgctaaatc ccaatctctt ttatcgcaaa gctctaaagc
    39601 ttcttttgca ttgttaagct ctatatctag ttttttcttt ttattttggt tggaattttt
    39661 accttttttt tctaattgtg cagctgttaa aacaaagcct ccacctacag aataataagt
    39721 ttcttcatcg actaacccac ctttacaatc ataagcttta atcttcatac cattctcatg
    39781 taaaggtaaa aaatctttgg aaaatatcaa atctttttca taattaaaac aaagtttttt
    39841 ctcaccacaa aaatcaattt gagcattttc aatagcattt ttatttactt catcttgtat
    39901 tgctgcgctt aaatttttag cttctaggcc atttaacccc caaattacag ccttatcact
    39961 caagtgtcct ttacctgtta atgacaaaga accataaaga gtaacctcaa ctctatcaat
    40021 ttcatcaagc tttttagcga cttttttaca aaataaattt ccagcaagca taggccctaa
    40081 agtatgagaa gaagaaggac caacacctat tttaaaaatg cttaaattac tcatttttta
    40141 tccttaattt ataaaagatc atgaattgca gcagaaattg caactatccc cattaccaaa
    40201 ataaaaagat ctaaaaattt attacgaaat cttgccaaaa tatcaaaacg ataaatacaa
    40261 taaagtggca ttaagaaaag caaaatagcc aaaacaggac caccaatagc ctcaataatt
    40321 cctataacac ttggattttt atacgcaaca agccaagcaa tagcaaaggt aatgatcgct
    40381 gttaaagttt gagcgaattt accttgaatt ttaccattac ttgctttata taaaatacca
    40441 tttaagcctt cttgagaacc aagataatgc cctaagaaac ttttgctaat agccacaagc
    40501 gcaacaatag gcccaacata agctagtaaa gaaacttcag gaaatttatt tgctataaaa
    40561 gtaagaatat tgatattttg atcttttgct gatgcaaaat cttctggtgt aaaggttaaa
    40621 gcacaagaaa aaacaaaaaa cattacaaca aaaaccataa gaataattgc caaagaaata
    40681 atttttctag cgcgaggctc agcataatca ccatattctt ttttacaata acaagcaagt
    40741 gaagaaataa taggagagtg attaaaacta aataccatca caggaataac aagccataaa
    40801 gtaacccaaa aattacttgt tgaaattacg gaaaaatcaa catttgtaaa taatgatgaa
    40861 ttccattgtg gaattaaaag caatgaaaaa ataaataaaa atataataaa aggaaaaaca
    40921 agaaaactca ttgcttttgt tacaacattt tcaccaagaa tagaaatcaa aaccaaaact
    40981 ccaacaatca aaaaactcac ccaccaacga gcagcatgag taagatctgc attgaaatta
    41041 aactgattga ttaagaactc aagcaaagtt gttgtaagat tagcactata aaccaataaa
    41101 ataggtaaaa tagcaaaaaa atacaaaagt gtaattaaaa atccaccacc tttgccaaaa
    41161 taactttctg caacaaaagt aatatcatct tttggattag aacttgaaag cacaaagcga
    41221 cataaatttc tatgagctaa gtaagtcata ggaaaagcta aaacaagtat aactaacaaa
    41281 ggtatcaatc caccaagccc agcactaata ggtaacaaaa gtacgccagc tccaatagct
    41341 gttccaaaaa gagataaaac ccaccttgta tcgtgactag tccatttagg agtattcatt
    41401 attcttcctt aaatttaaga ttacatcttt tttattttag caaaatattt ataaa
//
LOCUS       DAZAND010000004        35364 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.004, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000004 DAZAND010000000
VERSION     DAZAND010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 35364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35364
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.004"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            40..711
                     /gene="racR"
                     /locus_tag="ACHDOB_000143"
     CDS             40..711
                     /gene="racR"
                     /locus_tag="ACHDOB_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HFN3325104.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            708..1943
                     /gene="racS"
                     /locus_tag="ACHDOB_000144"
     CDS             708..1943
                     /gene="racS"
                     /locus_tag="ACHDOB_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsS family sensor histidine kinase"
                     /protein_id="HFN3325105.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLRSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     SAILEEAKEHLMRDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            1943..2515
                     /gene="recR"
                     /locus_tag="ACHDOB_000145"
     CDS             1943..2515
                     /gene="recR"
                     /locus_tag="ACHDOB_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HFN3325106.1"
                     /translation="MAKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCGQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(2512..3048)
                     /gene="hydD"
                     /locus_tag="ACHDOB_000146"
     CDS             complement(2512..3048)
                     /gene="hydD"
                     /locus_tag="ACHDOB_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HFN3325107.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHPEFTLDFIDG
                     GTLALQLSYIIARYDRLIVLDCIEAQDASIGDIFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLTKEGFAYE
                     KIADFSLQELADISYKNY"
     gene            complement(3045..3737)
                     /gene="cybH"
                     /locus_tag="ACHDOB_000147"
     CDS             complement(3045..3737)
                     /gene="cybH"
                     /locus_tag="ACHDOB_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HFN3325108.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVMLGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKYIKEEKH"
     gene            complement(3748..5463)
                     /gene="hydB"
                     /locus_tag="ACHDOB_000148"
     CDS             complement(3748..5463)
                     /gene="hydB"
                     /locus_tag="ACHDOB_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HFN3325109.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNPNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGIGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDAKGNNLSEYK
                     VNVNL"
     gene            complement(5466..6605)
                     /gene="hydA"
                     /locus_tag="ACHDOB_000149"
     CDS             complement(5466..6605)
                     /gene="hydA"
                     /locus_tag="ACHDOB_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HFN3325110.1"
                     /translation="MIDYHQIESRLSALEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLESAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPDFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(6725..8566)
                     /gene="mnmC"
                     /locus_tag="ACHDOB_000150"
     CDS             complement(6725..8566)
                     /gene="mnmC"
                     /locus_tag="ACHDOB_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004808 - tRNA
                     (5-methylaminomethyl-2-thiouridylate)(34)-
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HFN3325111.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLQTTPSKRPKKLFYISIEAFYIEKEQLREIYQKL
                     GFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDITILKELDFKADIWYLDG
                     FSPNKNSQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDVFE
                     KHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKNLVKNLFEKSKACIYFNHEFQA
                     YKFENECFTLKFKNDIVKSDYAVLIYAMGADTKDFVFYDEMKLSKVRGQVTHLKPFLN
                     TPFPLSSKAYICPVKDDLQVIGASYDRLDASLESKEEDDKQNIENIAEFIDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEVFYKEEYKALLWTKNKEQKLAKISCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLYLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(8563..10542)
                     /gene="amiA"
                     /locus_tag="ACHDOB_000151"
     CDS             complement(8563..10542)
                     /gene="amiA"
                     /locus_tag="ACHDOB_000151"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HFN3325112.1"
                     /translation="MAKIFVFLVFVFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVINEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFEGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKLIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKALETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNKNLTLGFYAQTTNQNVNKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(10542..11633)
                     /locus_tag="ACHDOB_000152"
     CDS             complement(10542..11633)
                     /locus_tag="ACHDOB_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018580 - nitronate monooxygenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HFN3325113.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRIGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(11630..12835)
                     /gene="tyrS"
                     /locus_tag="ACHDOB_000153"
     CDS             complement(11630..12835)
                     /gene="tyrS"
                     /locus_tag="ACHDOB_000153"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HFN3325114.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMHLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(12847..15042)
                     /gene="spoT"
                     /locus_tag="ACHDOB_000154"
     CDS             complement(12847..15042)
                     /gene="spoT"
                     /locus_tag="ACHDOB_000154"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HFN3325115.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(15026..15250)
                     /gene="rpoZ"
                     /locus_tag="ACHDOB_000155"
     CDS             complement(15026..15250)
                     /gene="rpoZ"
                     /locus_tag="ACHDOB_000155"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HFN3325116.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(15261..15980)
                     /gene="pyrH"
                     /locus_tag="ACHDOB_000156"
     CDS             complement(15261..15980)
                     /gene="pyrH"
                     /locus_tag="ACHDOB_000156"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HFN3325117.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSIVKNN"
     gene            complement(16032..17225)
                     /locus_tag="ACHDOB_000157"
     CDS             complement(16032..17225)
                     /locus_tag="ACHDOB_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HFN3325118.1"
                     /translation="MRKNILIFFCFFLFVDISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSN
                     MEGKLISLMAKDFAYDLPIPQGYIESEESFMAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQINKINESLKDYNAQLAKLQSLKQKQISEINKQKTDRAIYAKKLDDLQAQ
                     QEELRKTLNQLKIINDKEDANSNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(17222..18028)
                     /locus_tag="ACHDOB_000158"
     CDS             complement(17222..18028)
                     /locus_tag="ACHDOB_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3325119.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILITNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(18015..18680)
                     /locus_tag="ACHDOB_000159"
     CDS             complement(18015..18680)
                     /locus_tag="ACHDOB_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HFN3325120.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQAAKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(18750..19928)
                     /gene="trmB"
                     /locus_tag="ACHDOB_000160"
     CDS             complement(18750..19928)
                     /gene="trmB"
                     /locus_tag="ACHDOB_000160"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HFN3325121.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSKLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKVQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLTQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFVFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(19928..21163)
                     /locus_tag="ACHDOB_000161"
     CDS             complement(19928..21163)
                     /locus_tag="ACHDOB_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HFN3325122.1"
                     /translation="MMKRFRLGFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     EPSQVVSSTSKALPPQVEHLSASTDGSNKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(21108..22076)
                     /locus_tag="ACHDOB_000162"
     CDS             complement(21108..22076)
                     /locus_tag="ACHDOB_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFN3325123.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINIVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRHILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFKQINLGENDEKISLGFLLEFFNSFA"
     gene            22154..23254
                     /gene="mrdB"
                     /locus_tag="ACHDOB_000163"
     CDS             22154..23254
                     /gene="mrdB"
                     /locus_tag="ACHDOB_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HFN3325124.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGIHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            23308..23384
                     /locus_tag="ACHDOB_000164"
     tRNA            23308..23384
                     /locus_tag="ACHDOB_000164"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23342..23344,aa:Ile,seq:cat)
     gene            complement(23492..23567)
                     /locus_tag="ACHDOB_000165"
     tRNA            complement(23492..23567)
                     /locus_tag="ACHDOB_000165"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(23532..23534),aa:Phe,seq:gaa)
     gene            23708..25051
                     /gene="ktrB"
                     /locus_tag="ACHDOB_000166"
     CDS             23708..25051
                     /gene="ktrB"
                     /locus_tag="ACHDOB_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HFN3325125.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            25062..25712
                     /gene="ktrA"
                     /locus_tag="ACHDOB_000167"
     CDS             25062..25712
                     /gene="ktrA"
                     /locus_tag="ACHDOB_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HFN3325126.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(25709..26380)
                     /locus_tag="ACHDOB_000168"
     CDS             complement(25709..26380)
                     /locus_tag="ACHDOB_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HFN3325127.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSRYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPETKIKIPYYILQNYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(26386..27012)
                     /gene="upp"
                     /locus_tag="ACHDOB_000169"
     CDS             complement(26386..27012)
                     /gene="upp"
                     /locus_tag="ACHDOB_000169"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006223 - uracil salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HFN3325128.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEA
                     SKDFSLKEIEISTPIQKTTVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(27009..28244)
                     /locus_tag="ACHDOB_000170"
     CDS             complement(27009..28244)
                     /locus_tag="ACHDOB_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HFN3325129.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSYDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEINVHSAEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVVRLRKDAIVGTGRSDYANQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFDEKAYFESLK"
     gene            complement(28246..29637)
                     /gene="gltX"
                     /locus_tag="ACHDOB_000171"
     CDS             complement(28246..29637)
                     /gene="gltX"
                     /locus_tag="ACHDOB_000171"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HFN3325130.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFKGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVKFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYGKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFVNENNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLGVDEC
                     KKRIENFLKVRGK"
     gene            29702..30517
                     /gene="salC"
                     /locus_tag="ACHDOB_000172"
     CDS             29702..30517
                     /gene="salC"
                     /locus_tag="ACHDOB_000172"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HFN3325131.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKVL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKTNLKSK
                     NQSYEQFRVNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINTNI
                     YLSNNPQTLENIKNTKKTILKPQNTSLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(30555..31886)
                     /gene="accC"
                     /locus_tag="ACHDOB_000173"
     CDS             complement(30555..31886)
                     /gene="accC"
                     /locus_tag="ACHDOB_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HFN3325132.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(31888..32343)
                     /gene="accB"
                     /locus_tag="ACHDOB_000174"
     CDS             complement(31888..32343)
                     /gene="accB"
                     /locus_tag="ACHDOB_000174"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HFN3325133.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            32492..33052
                     /gene="dcd"
                     /locus_tag="ACHDOB_000175"
     CDS             32492..33052
                     /gene="dcd"
                     /locus_tag="ACHDOB_000175"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006229 - dUTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HFN3325134.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDNVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            33101..34105
                     /gene="pseB"
                     /locus_tag="ACHDOB_000176"
     CDS             33101..34105
                     /gene="pseB"
                     /locus_tag="ACHDOB_000176"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HFN3325135.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSAAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKLVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWTSEKELLEIINHTEGF
                     "
     gene            34107..35237
                     /gene="pseC"
                     /locus_tag="ACHDOB_000177"
     CDS             34107..35237
                     /gene="pseC"
                     /locus_tag="ACHDOB_000177"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HFN3325136.1"
                     /translation="MLTYSHQNIDQSDIDALTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGIKEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELIDKIKLLRSHGIVKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGVGVQVHYKPTYEFSFYKKLLGEIKLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCG"
     gene            35230..>35364
                     /locus_tag="ACHDOB_000178"
     CDS             35230..>35364
                     /locus_tag="ACHDOB_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HFN3325137.1"
                     /translation="MDKLDFRSQDFSQTGKAMYELACELFPIPRSITGQGFRDSLEIL
                     N"
BASE COUNT        11674 a         6359 c         4829 g        12502 t
ORIGIN      
        1 gattttaaag actacataaa aatttacaag gacactagaa tgattaatgt gttgatgata
       61 gaagatgatc ctgactttgc acaattatta tctgaatatt tagcgcaatt taatattaaa
      121 atcacaaatt ttgaaaatcc taaaagtgct ttaaatgtgg gtattcaagg ctatgattgt
      181 ctgattttag atttaacttt acctggaatt gatggtcttg aagtttgtag agaaatccga
      241 caaaaaagca atattcctat tatcatctca tcggctagag gtgacttaag cgataaagtt
      301 gtggggcttc aaatcggtgc tgatgattat ctaccaaagc cttacgatcc aaaagaaatg
      361 tatgcaagga ttatgagtct tattcgtcgc acaaaaagag ttgaacacac taataatgaa
      421 aatattaact ctgctttcaa aattgatgaa agaagacatg agatcaccta tgaagataag
      481 gttttaacac ttactcctgc tgaatttgaa attttagaat accttatcca acaacacgga
      541 tatagtgttt caagagaaca gcttgtaagt cgctgtaaaa atctaaaaga taaagattct
      601 aaaagccttg atgttatcat cggtcgctta agggtaaaaa taggagatag ttcaaaatct
      661 ccaaaacata ttttttctgt tagaggtata ggatataaac tgataggatg acaaaaaatt
      721 attctattca taccaaactg attattttat ttgttgttac ttttttcttg gtttgtgtgc
      781 tttttatcgt tcttttaaaa atagaaggga atacctataa tgaagaagaa agtttaaaac
      841 aagaaaatct tataaaaaat ttactcatct cctatgaaaa cacttcaggt gttgaaatag
      901 gagcttatct tggaaacagc ggttttaacg ctatacaaaa tcccaatctt gtaaaagcta
      961 taagaaataa tggacaatca ctttttaaag caggcggaga gctttgtact ctttcttctt
     1021 taaaatatca tagcaatctt tattttgatg ttcaatgtaa agattttgat ggcttatatg
     1081 aagaaaatac tagcgatagg gtttataatc ttttattgat aggatttttc tctttttctt
     1141 tgctggttgt ttttatgtat ttttcggtat taagatcttt agagccttta aaaaaattaa
     1201 gaagacaagt tgccgaagtt gcaaatgggg aacaacctga ttttttagac tatcaagaag
     1261 atgaagtagg taagatcgcc tttgaatttc aaaaagcttt caagaaaaac caagaattaa
     1321 tccaatcaag acaacttttc ctaagaacaa tcatgcatga gttaaaaacc cctataggaa
     1381 aagggagaat catttctgaa atgatcaaag aagacagaca aaaagaaaga cttatcgcta
     1441 tatttttacg catggattct ttgatcaatg aatttgccaa aatcgaaaat ttattttcaa
     1501 aaaactacaa cttacacttt aaacctagtc gttttagcgc tatacttgaa gaagctaaag
     1561 aacaccttat gagagatgat tttaacaaag tggtaaaagt tgatataaga tatgatgctt
     1621 taatcaatgt tgatatggaa attttctctg taattttaaa aaatcttatc gataatgcct
     1681 taaaatactc aaacaatggc acttgtgagc ttttttgttg taaagaatgt tttaccatta
     1741 aaaatccagg caaaccttta gcagagccta tagagcatta tcttgaagct tttacaagag
     1801 aaaaacataa tcaggtcaaa ggtatggggc taggacttta tatagtttca gaggtatgta
     1861 aactgcataa ttttgatttg atttattttt atgatgatgg aaagcattgc tttaaaattt
     1921 tctttggaga taaagaaaaa taatggcaaa aggcctagaa aaattcaatg aacttgttga
     1981 aagttttgca aatttaccta ccataggaaa aaaaaccgct ataaggcttg cttatcatct
     2041 ttgcataaat aatcaaatcg atggcatgaa actcgcacac aatatagaaa atgctatccg
     2101 ctttataaaa ccttgtgggc aatgcggtgc tttaagcgaa aatgagcttt gcgaaatttg
     2161 tagcgatgaa gaaagaaata aaaacatttt atgtatagtt gaaagcccaa aagatatact
     2221 aacactcgaa gagagtcaaa gttacaatgg gctatatttt gttttagatg agttaaatga
     2281 agaaaaactt gaaaaactaa agcaaatcat acttaagcta aatatctctg agctcatttt
     2341 tgcattgaca catagcatta attctgatgc aactatcttt tttatagaag ataaatttaa
     2401 aggcttaaac ctaactttta gtaaaatcgc tcaaggaatt ccaagtggtg tgaatttaga
     2461 aaatgtggat ttaatctctt taaataaagc tatgaatttt agaacaaaaa tttagtaatt
     2521 tttataagaa atatcggcta attcttgcaa agaaaaatcc gcaatctttt cataagcaaa
     2581 accttccttg gttaaaaaat caagtaaagt tttttccatg attttagctc cttgtataag
     2641 ctcatctgaa agcttaaaac tcatcgcttc aatacgcttt ggcacacaag ctaagatgtg
     2701 tgttttaggc aaatctcctg caagttccat gtattgtaag gtttgaagca tttctatttc
     2761 atgagcactt ccactccagc tgattttatt aggcatagca tcataaggaa agaaaaatat
     2821 atctcctata ctcgcatctt gcgcttctat gcagtctaaa acgataagtc tatcgtacct
     2881 agcgatgata tagctaagtt gcaaagctaa agttccacca tcaataaaat ctaaagtaaa
     2941 ttcaggatga gtaaatttgt agtttttttc aagttgtttg caaagatgaa cgcctaagcc
     3001 ttcatctgca aacatgatat tgcctattcc aaggactaag aatttcaatg cttttcttct
     3061 tttatatatt tatatccgct aataatagca tccatagcac catctttacc ttttactgcg
     3121 ttaaaaatcg ccatataaat atgtactggt acaaaaatca taatcaccca catcaaaatt
     3181 ctatgataag ttcttacatc agccaagcca cccattgcag cttcaagcgg tcttaaaata
     3241 tgatataaaa gcccacctaa gccctcatga taagtatgag tataaagaat aagccctgta
     3301 agaatgatac ctaacatcac aagataaaag aaaaaataag ttacaaattg caaaggatta
     3361 taaacccctt ttaaatgcgg atgttttcct aagaaaatgt aaaattttac ttgttctatc
     3421 cataatttga tattaaaaat atcccataca cttctgcgtt cttttgcgct taccttatcg
     3481 cagaaaaaca aatatacttt aaaaataata caagcgatta aaacaaaacc caccgcttga
     3541 tgcactaagc ggtattttgc ttgcataaaa tttacgggtt cgccgttgct aataggactt
     3601 tgaaacacat aagaaagata atatcctgtg ccaataagaa tcactatagc aatagctctt
     3661 acccagtgcg ttaaacgcaa acctatgcta aattcatatt cagcttttct ttgcaatttt
     3721 tcttctttgt tttgcatgaa agcctcctta tagattgaca ttcactttat attcgcttag
     3781 attattgccc ttagcatcca ttacatgcac cgcacaagca atacaaggat cataagagtg
     3841 aatttttcta atgatttcaa gtggttgttt tacatcagcg attttaagtc ctatcaaaca
     3901 ttgctcataa cttccaccta tgccatttgc gtcttttgga cttgcattcc aagtagaagg
     3961 cactacagct tgccagtttt caatgacgcc atttttaatt ctacaccaat ggcttaatgt
     4021 tccgcgtggc acatgcccca tatagcgtcc tttatattct ttagaattat caatcacata
     4081 aggagcacaa gtactctgat ctacttttaa attttcaact aaattattaa acgcttttaa
     4141 agcattattt gcaacgattt ttgcttcaat acaacgcgca gctgttcttc caagtgtgct
     4201 aaatacagca tttaaaggaa gtcctgtttc ttttaagaac tcatctacta caggaacaac
     4261 atttggatta cccttagcat aatttacaac gatatttgct aaaggtccta cttgcatagg
     4321 gtttccttca tagcgtggag ctttaatcca actatattta cccttagtat caaacacttt
     4381 agaatggaca ttatttccat gatgatctac gctttctcca tctacaagtc ctgtataatt
     4441 tggatttgtt ttgccatcat aaggatgtaa aggttcattg tctgcatacc aagaatgagt
     4501 tgcctcttcg gtaatcttat cttcttctac ttcataaacc ttgcttaaat ctccattttt
     4561 gataatacca ctttcaaaaa gccattcatc tcttccgatt tgaaattctt taaaggtgta
     4621 aagattattt acccctatat catttaaaac acttgcttca tgtgcataag cttttcctgc
     4681 catcacaaga tcaggataat acgcacgatt aacaaagtct tgcacttctt ggaatttaac
     4741 catatattca cccattcttg caggatcaag taaatccata acgcaagtta caccaccaac
     4801 agttaagctt tgtggatgtg ggtttttagc tccaaaaatc gccatacatt gagcaatgat
     4861 tctttgaatt cttaaacatt ctagatagtg agaaagaaca attaaatttt gctcaggagt
     4921 taaacgataa gttggatgac catagtacgc attagcaaaa ggtcctaaat ttcctttatc
     4981 tacaaaagtt ttaagtcttt gttgcacttc aagaagttta tctgcacctg ttgcataagg
     5041 atttgaagtg tatttaaaag cttcatcgct tgctttttta acatcagcac ttaaagcact
     5101 taccacatca gcccaatcaa gcccatgaag ttgataaaaa tgcacaatat gatcgtgtaa
     5161 aaataaagct gcattcatta aagttcttgt taaaagcgca tttaaaggcg gagtaatacc
     5221 taaagcattt tcaacagcaa ctatacctgc tttataatgt gaaaaagtac aaactccaca
     5281 aattctttgt gtcataaaac ccgcatctct tggatcacgc ccttttacta tggtttcaat
     5341 accacgccac aaagtagagc ccgcataagc ttcttttacc acattattat catcaacaac
     5401 aacttcaact cttaaatgcc cttcaattct tgtaatagga tctacgatta ttttttgact
     5461 catttttatt ccttatcttt ttgcatggaa gatatcactg cgtgtgctgc tatagcaacg
     5521 cctgtaagtg taagcacacc tatgccgatt ttatctgaaa cactatccgc acccaagcca
     5581 aaaacagtat caaatttacg actagccata ggctcttcaa aaggccccat agtatcccaa
     5641 aaatcaggct cagaacaacc tatacaacca tgtcctgctt gaataggcca agaagtgtgc
     5701 tggttaaatc tctctcttga gcagttatta aaagtataag gccctttaca acctacttta
     5761 taaagacaaa aaccttgttt tgctccttca tctccaaaag catgtacaaa ctcacccgca
     5821 tcaaaatgtc cgcgtctttc acaaagatca tgaattctta gaccataagc ccattttggt
     5881 ctattataca catcaagtgc tggtaactca ccaaataata aataatgaag cacattaccc
     5941 actatatttt tttcacttgg aggacagcct ggaacattga tcacagtttt gcttgttact
     6001 ttgcttaaag gctgtgcgtt actaggattt ggtcttgcgg cttggattcc tccaaagcta
     6061 gaacaggttc ctatagcaaa aattgccaaa gcattttcac ttgccatttt tgagagctca
     6121 tagcctgttt ttccatgtgc acctatggtt aaaaaatgct ctgtatcacc catagggata
     6181 ccaccttcaa ccattaaaat gtatttattt ttatgctttt gaatggcact ttctaaattt
     6241 tcttcagctt gccaacctgc tgcagccatc actgtttcgt gatattctaa agaaatataa
     6301 tcaaaaatca aactatcaat cgttggagta tcacttctta acaaactctc gctacagcct
     6361 gtacactcag ccatatgaag ccacacaaca ggaagcctat cagcaagctc agcagctttt
     6421 gccaccatag gagtaaaact cgctggcaaa gccaaaaatg cagtcatagc acctgcccat
     6481 ttcataaaat cccttctaga aaaacctgac ttttctaatg cttttgtaat actatcattg
     6541 tctttcaaag aaggaagctt ttcaagagcc gataaacgcg actctatttg atgataatca
     6601 atcattatat ttcctttata acatgaaatt tattctctat aataataaaa taaaggaagt
     6661 taaaataaag ttaaaaactt actctcataa gcaaatatta gtattactct taattaaagc
     6721 ttaatcataa gccttttttg agttttcgaa tcaaaaatct tgcagggtga atagcgtgga
     6781 tgtatttttt ttctaaatac aagggttcat tatttatcaa tgcacacaaa taccttgccg
     6841 ctaaaacact tgtgctaaaa ccccttgatc catgagcaaa attaaaatac aaattacaag
     6901 atattttagc tagcttttgc tccttgtttt ttgtccataa taaagcttta tattcttctt
     6961 tataaaacac ttcatcatag gcatttccaa ctatcataaa gcgatcactc gaataagatc
     7021 taaagcctac cttagaacct atgatttcta attttgtatt tttatctata aattcggcta
     7081 tattttctat attttgttta tcatcttctt cttttgattc taaacttgca tcaagcctat
     7141 cataacttgc tccaatcact tgcaaatcat cttttacagg gcaaatataa gccttagaag
     7201 ataaaggaaa tggagtattt aaaaaaggtt ttagatgtgt aacttgacct cttactttgc
     7261 ttaatttcat ctcatcataa aaaacaaaat cttttgtatc tgcacccata gcataaatca
     7321 aaaccgcata atcactttta acaatatcat ttttaaattt taaagtaaaa cactcatttt
     7381 caaatttata agcttgaaat tcatgattaa aatatataca agctttactt ttttcaaaaa
     7441 gatttttaac caaatttttt ggaaaaatca ctccaccctc ttctaaaaaa gcttgatttt
     7501 ttgaaatttt aaacaaaaca ttttctcttt gtgtgtcaaa tctttcttgc atcaaatcat
     7561 tatgtgcaaa ctccaccaca cccttaaatt ctaaatctaa aatttgtcta taaaaacggc
     7621 ttgcttctat aaaagaaagc tctgaaaact cccctaaatt taccttaggt tttaagatta
     7681 aagagcttaa aattccactt tcatttccac ttgcaccctt gcctaattct aaatgttttt
     7741 caaaaacatc tatctcaaaa cctcttaaac taagctcata agctaaaaca gcgcttgata
     7801 tacctgcacc aataatagct acttttttat tttttaaaga tgaaaatgtt cttgaaaaat
     7861 acgcttcttt gtctttaaac tcaagctcat tttccaaata agctttaatc atttctcttt
     7921 ttctaaaacc tttggttttt tctactctaa agccatattt ttttaaattt ttttgtaaaa
     7981 aacttgccga agaaaaggta caaatttgtg tatttttttt agaaagtctt gccacttcaa
     8041 aaattaaatt ttcatcaaac atttgcgaat ttttatttgg agaaaatcca tctaaatacc
     8101 aaatatcagc tttaaaatcc aattctttta aaatagtaat atcttcaaaa acaagatcta
     8161 aaaaacagtc ttcaaaataa aaacgataaa tcccttcttt agctttagga taaaatttta
     8221 aaaattgttc taaaagctct ttaaactctt cataaaatcc tagtttttga taaatttctc
     8281 ttaattgttc tttttcgata taaaaagctt ctatgctaat ataaaaaagt ttcttaggac
     8341 gcttagaagg agtagtttgt aaaaagcgct tcaaagtaag aaaaaaattt aaacctatac
     8401 caaaaccact ctctgcgata atgaaatttt cttgattttt ccattcaaaa gaatgagtat
     8461 aaacaaattt actttcattt aaaccatctt tggaattaaa ataaaaatca tcaaaatcca
     8521 aagaaaaagg agtattatct ttaaagatta acttagcttt tttcatcggt tgttataaaa
     8581 ataactctca actccatcag caataccctt aaccaataaa tcttgaaaag ctttattggc
     8641 gattcttttg ccttcatttg gatgtgtgat atagccaatt tcaatcaaaa ttgcaggcat
     8701 ttgcgcacct actaaaaccc aaaaaggtgc ttctcttaca ccgccatcta cgattttata
     8761 ctttttgcgt gtttgagtga gtatattttt ttgtacatca atggctagtt tatttgaagc
     8821 aacgattttt tcacgattta agaaatttaa aatactttgt tttgagaaat aattaatctc
     8881 ttcaaaatct ccttgatttt ctttttctgc tgccttttta cttctttcac ttcttgcagg
     8941 acttaaaaag aaagtttcca caccttcact acttttggct tttgtggcat ttggtgctgc
     9001 attagcatgt atagaaataa acaaatccgc tcttttatca ttggcatatt tagttctatc
     9061 acgaagattg ataaatttat ccgaacttct agtataaagc actttataac cgcgtttttt
     9121 aagttcattt ccaagtttta aagccgtgct taaaactata tctttttctt ttaagcttcc
     9181 ttttttatca cttaaggcac cgctatcttt tccaccatgc cccgcatcga taaccacaag
     9241 ctttcctgat ttgtaatttg tatttaaagt tttactagaa ctttgagttg cttttttgtt
     9301 tacattttga tttgtagttt gtgcataaaa acctaaagtg agatttttat tatccaactc
     9361 ctttaagagt ttaaattctt taggagcact caaaaccaca cgaacagttt ttggattgta
     9421 ttgagtaact gtaatcacat tttgtccaaa agtaaagctt tttctattac cttctaacac
     9481 acccttaaaa cttacaacat atcggaattt ttgatctttg gtatcaaata ctgctatttc
     9541 tttttcatct aaatcatcgc ttaaatttaa caccacagca ttagaaattt tatccacatc
     9601 taaaacatat aaaggctctt gattttcttt ttcgttattg gtttttttat cttgtttttt
     9661 tgtttctaaa gctttggttt taatttctgt tttttgatct tgctttttct ctgaaatttt
     9721 actaacttgc tcagtctttt tttggctagt agtttctttt gaaaaaatta atttttcttc
     9781 tttaaaagat atatcaatag gaattttttc tttagcataa accactatgc gtatggtttt
     9841 gggattaaat tgtgaaatca ctaaacgata gtcatcaaat ttaaactctt ttttaccccc
     9901 ttctaaaacc ccctcaaaat cactaataaa acgatagttt cctttttcgt ctaaagcaaa
     9961 actttttaat tgatccttat ccaaatctgc atttagttca aactctacac cttggtttgt
    10021 tttacttgac tttaaaacat aaattttatc atcgcttttt gctttagaaa cgatactact
    10081 ctttggtgct tgcgaagttt tagaatttgt tttttctgta ttttttattt gttcgttaga
    10141 tgattttttt tcattttttt gaactgtttt tataggttca aaagttgatt tttcagtatc
    10201 ttgagaaata ttttgaacct taatatcttt aataacagcc tttcttaaag cattaatact
    10261 tgcttcactt ataccacttt cttttaactc attagcatat gacttgtcat ctaaatttaa
    10321 agtatttgaa ctgatgatca atctttttaa aatttcaatt ttagtttttt catcttcatt
    10381 aataacactt tgtatataaa ggcttttgag ctgatggtga aattttactt gtacttcact
    10441 tttagaaccg ataaaatttt tatcgaaatt tgcaagttca ttttcatagg ctccaaaaag
    10501 agttgtgaaa acaaatacta aaaatacaaa aattttagcc attattcacc attaaccaat
    10561 ttttccataa gttctttaac actgataagc ttatctaaac gatatccatt tgcacctgta
    10621 aagaaaagcc ctgtttcttt tttacctgac cacgcatcaa aaagcctatc tgctatacaa
    10681 taccctactt tagttgcctc ttttccgcgt ccacaaggcg ctacacaatt gcttatacaa
    10741 ttgatctttg gacctattct tttatctacc aaatttaaaa gattggttct aaccccacgt
    10801 gcaggatagc ccacaggaga tttaataagc tctatatctt cttctttaga agctagtaaa
    10861 acgcttttaa attcttcgct tgcatcacat tcaaaagttc ctatgaaacg cgttcccatt
    10921 tgaacaccac tagcccctaa agaaatagcg ttttctatat cttttttatc ccaaattcca
    10981 cctgcagcaa tcacaggaaa agacccccaa tttttagcct cttctaccac aggagcgatt
    11041 aatttttcta gctgataatt tggatctaag cactgctcat aagtaaaacc ttgatgacct
    11101 ccactttttg gcccttctaa aaccactgca tcaggcaagc gattgtaacg gctttgccat
    11161 cttttgcaaa taatttttaa agcctttgca gatgaaatga taggcactaa agccacatca
    11221 ggaaaatctg cagtaaattc aggtaaattt gtgggaagtc cagcacctga aacaatcaca
    11281 ttaaaaccaa cttcacaagc atcgcgtgct attcttgcat aatcattact tgcacataag
    11341 atattacacc ctaaaggtgc atcgccacaa acttttcttg cattattaat caaagcttgc
    11401 aaacccttgc gtgagtaaaa attttcactt ccataaggct tagcatttaa ttctttactt
    11461 gcatactttc tttcttcata atatcctgtt cccacagaag aaatgatccc aagtccacca
    11521 tttaaagaaa ctgcagaagc taatctatcc cagcttatgc ctagtcccat tcccccttga
    11581 aaaatgggat attttatagt atgttttcct atttgtaagg gttgtaaatt cattctttta
    11641 cctttaattt tgcaaatttt cttttaccta tttgtaagat gtattctcct tgttctaaat
    11701 gcatttgctc gtcgctaact ttttgagaat ttacacttac tgcattagca ctgatgcttc
    11761 ttcttgccgc agaagtagaa ctttccaaac cacattcaac caaagcctta gcaagccaaa
    11821 tttttccttg tatttcaaac tcagccatat cacttggtaa agcattttga gaatgaatcc
    11881 tatcaaattc agacttagca ttattagcct cttctttgga gtgaaaacgc tccgtaatct
    11941 ctaaagctaa attttcttta gcttttttag gatgtaaatt gccttgttct atatcttttt
    12001 ttatttgcgc gatttcttct agactttttt gacttaaaag ttcataatat ctaaacatca
    12061 attcatcact aatacttaaa attttagcat acatatcatt agctttttct gtaacaccaa
    12121 tgtaattatt taaactctta ctcattttgt ttacaccatc taaaccttcg agtaaaggca
    12181 tcataatcac agcttgttct tttcctatat tataaaccct ttgaagctgt cttcccatta
    12241 aaagattaaa tttttgatcc gttccgccca tttcaatatc gctttttaaa gccacgctat
    12301 catatccttg aagtaaagga tacaaaaact cgcaaatcga aatagggctt tgctctttaa
    12361 atctcttggt aaaatcgtca cgctcaagca ttctagctac actaaaagtt gaagtaagct
    12421 ctactatacc cgcagctcca agttcattaa gccaagtaga attaaactta atctgtgttt
    12481 tttctttatc caaaacctta aaaacctgcg tttcataagt tttagcattg attaaaactt
    12541 gctctttatc cagcttttta cgcgttgcac tttttccact tggatcgcca atttgtcctg
    12601 taaaatcccc aatcaaaaat tgcacaatag ctccatgttt ttgcaaaaaa gccatttttg
    12661 ttaaaaccac gctatgacct aaatgtaaat caggtgctgt aggatcaaac cctgccttta
    12721 tgaagaaatt ttcacccttt tcataataat ttttaattaa attttctatt ctttcttcat
    12781 caataagctc tgcacagcca cgcttaactt ctgctaatat tttttttata tccataataa
    12841 acctttttaa ccttctttat aagcatcatt taaagatgta aaatctaaaa ttttacaacg
    12901 agattttaac ctatccttga cactatctgg gttgatatta tcaggaattt ccattgtaat
    12961 ctcaaaataa tctaccgccg aatttaaatc acttgataaa ttaattgtta ataaatttat
    13021 ctgcatttta gctaaaaatg ccaaaaattc cgctaaaaca ccttttttat tttccaaaga
    13081 aaaaatcaat ttataagatt tagggatgtt agaatcccat tttataaata ccatatcttg
    13141 attattatct atcattttat cagctctatc gcaaagctta tgatggacaa tagcgttacc
    13201 acctttaaca aaagctaaaa cagcatcacc tctttttgga tggcaacaaa aatcaaaatc
    13261 cacattagcg attttatggt tgcaatatag agtaaaattt cctatttttt gttctttaat
    13321 ctcatattta tcaaaccaat atgacttctt ggcgtatttt ttaagaccat taactatatc
    13381 ttttaaataa gcactatctg ttgctacttg tctaatacgt ctggctaaat tttctttttc
    13441 tatccaagtt tcaattctgt ttttatcaac tccaaaaata aaacttaaca tattaataga
    13501 acttgctaga ttaatctctc tgattttttg cttacaaaat tcccttatac ttgcttttgc
    13561 ttttcctgtt ttaacactat ctatccaaga acagcgataa aatttatcat tactagtaac
    13621 cactcgcaca atatcgccat ttttaagctc ggttaacaaa ggtactttaa tacgatttac
    13681 ataagcactt tttgcatgaa gccctacttt ggtatgcact tcataggcaa aatcaagaac
    13741 cgttgcacca cgaggcaaag tgaaaatttc tcccttagga gaataaactg cgacatcttc
    13801 aacataaaga ctatctttag catattcata aagttcaata gcattataat cttctgcatt
    13861 ttcaagattg tttatacttt gcattgaaat atctgtaagc caatcaagac gaggcgcaac
    13921 cacactgcca tcttctttat atttccaatg cgctgctata ccaaattccg caattttatg
    13981 catatcaaaa gttcgaattt gtgcttctat aatactttta gcatcaaaaa gtgtggtatg
    14041 tatggtttga taaccatttt gtttaggcaa ggctatataa tccttaaaac gcgaaaccaa
    14101 ggggttaaaa tgtgtatgta aaattcccaa agctaaataa caatcactta ctttttcaac
    14161 caaaattctt accccaagca aatcaagaac ttcttcaata ccaatgcctt ttctttgcat
    14221 tttaagataa atagaatagc tatgtttaat gcgtttttga atttcaaaac taccttgtct
    14281 aaagccattg ctcaaaaata aaagttcgat tttggaaata aattcattta aacctaattg
    14341 catttcttga ttattggagt tgatataatt gtcaataagc ttatactcat ctggcataag
    14401 atatttaaaa ctaagatctt ccaaataatt ttttatgctt gaaataccga gtctatgggc
    14461 tattggagca tatacaacta aagtttcttc gctgattctt ttttgcttat cttctcttag
    14521 aatatcaaga gtaagcatat tatgcagcct atcacataac ttcacaatca aaaccccaac
    14581 atcttcaatg cttgctaaaa gcatatttct gaaagtcaag gctgatttag ttaaactttt
    14641 tttagatttt gatgaaatga gattatcttc tctaatttct ataattttag taagtcctaa
    14701 aacaagtttt aaaacctcag aaccaaactg ctctctaagt tcttcttcag tgcagtttgt
    14761 atcttcaatc acatcatgca ataaagcagc taaaatattg cttttatttt cacttaaaaa
    14821 tccaaccagt gttgccacta aaataggatg taccgcataa ggctctccac tttttctaaa
    14881 ctgcccttca tggcaaaata tacagtaatc taccgctttt tcaagaatgg catcatggcc
    14941 acaaatttcg aaaagcaaag ccttagcagc ttctaaatct ttacaatttt ttacattatc
    15001 gattaattgt tcaagcaata attcttcatc gattggtttc aactaaaccc tctaaagtga
    15061 ttttattttc tgcaatttca tataaagcta tatctgcaag tttattttta tttttatcaa
    15121 agtctaccaa aggggttgct ccatttgcca attgttccgc tctttttgct accactaaag
    15181 aaaggcgata tctatcatta cccatttttt ccaaagcttt tgccgctact tcttctattc
    15241 ttttatccat aattttctcc ttaattattt ttaacgattg aacaaaggct agtatcacct
    15301 tgtatgattt taagtaaatt accctcttca aacatattac aaaccacaat aggaagtttg
    15361 ttatctttag ctaaagctat agctgtatca tccatcactt taatattatc ttgcatagcc
    15421 tcatcataac ttaaagtatt taaaaatact gcatcatcaa attgttttgg atctttatca
    15481 taaactccat taacttttgt agcttttatt accatatctg catcaatttc cacagctctt
    15541 aaaatagctg ttgtatctgt agtaaaataa gggtttccag tacctgcggc aaaaaccaca
    15601 acacgaccct tttctaagtg tctttgcgct cttctcataa tataagtttc acaaaatgct
    15661 tccatctgaa tggcgctttg aaccctaact tcaagtccag agctttctaa agcttcttgt
    15721 atagcaatag cattgataac cgtagcaagc attcccatat gatctccact tgtcctttta
    15781 atcaatccgc ccttagcagc acttactccg cgaataatat taccaccgcc tataactatg
    15841 cctacttcta tttgattttt tataagttct ttaatctctg aagctatgaa ttttaaaata
    15901 gaattttcta taccaaagcc attttcacct gctaaagcct ctcctgaaaa ttttactaaa
    15961 actctttttc tctcttgcat tatttctcct tatttaactt gaaattatat tttaaattcc
    16021 attaaattta gctaatttaa gctaatgagt tccaaaggat tgatatgaaa atttttttga
    16081 gttacttcaa aagtaagatc attttttatt ctacccacta cggcaccttt tttaatattc
    16141 ttaccaactt taatattagg agcaatctta tctaaatgtg cgtatattgt atgtatgcca
    16201 ttatcatgtt caacaataac aactcgagct aacatactag tatctttggc aaaaactatt
    16261 tttccatcta gcacattttt aacaactgca tcgcttttat tgcttcttaa aactacattc
    16321 tcgttaaaaa ttttaagatt gtaaacagga tcaacataat ttccaaattt ttgcttcaca
    16381 gtaaaagaat ccaatggagc tatggttttt tttcctgtgt aacgcttgac tgaacttcct
    16441 tgatagcttg aacctaattg tcttattttt tgattatttt ttactatttt agtatcattt
    16501 ttgtttgaat ttgcatcttc tttatcatta ataattttta attgatttaa tgtttttcta
    16561 agctcttctt gctgagcttg caaatcatcg agtttttttg catatatagc tcgatctgtt
    16621 ttttgtttat taatttcgct aatttgtttt tgttttaaac tttgaagctt ggctaattga
    16681 gcgttgtaat ccttaagact ttcattaatt ttattaatct gagcttgttt atcatcaata
    16741 agcctgctta ctccctcata atctttagaa attttaaaaa tttcttcatt taaaactttg
    16801 tttaaacttc ctaaaatttc aaaagccata aaactttctt cactttcaat atagccttga
    16861 gggataggta aatcataagc aaaatctttg gccattaaag atataagctt accttccata
    16921 tttgatttac ttttaagcaa atcttcattt tggcttgtaa gggtgtttaa ctcttgattt
    16981 tgagccttag cacttgcttc aagcttagaa gtttgtgaat ttaagctttc aatttgcaaa
    17041 cttagatctt tcaaactttt ttcaccattt aaaatgtcgc tagccaaatc ttcaagtttt
    17101 ttatttaact gttcttgtat gcgtttattt tcttctaaac tttttgtttt ttcatttata
    17161 gcgtttgcta aacttatatc aacaaacaaa aaaaaacaaa aaaagataag aatatttttt
    17221 ctcatctttt aaccttaaac ataaccgtat ttacacacaa caagcaaata aacaaagtag
    17281 ctaaaaaaat taaagtcaaa tgtaaaataa aattaatagg tggaaaaata atatctacag
    17341 cctttaaact ttcttggata atagaaagat caaaaatttg ggtaaaaaag gcaagtaaaa
    17401 taacaaaagc aataaaacaa tcaaccacaa ccaccttata aagcataaaa gatctaaacc
    17461 aaaacggagc tccaaataaa cacataattt caatacgatc ggtatgttca taaagccaaa
    17521 ttctcatctg ttttaaaaac aaaacaaagg caagtaaaat aatgataaac aaaaataacc
    17581 aaaaaacaaa tttcatcaaa ataagcaaag agtatatctt atcatgggtt ttggaaaaag
    17641 tttcaacctt actaacacct acaatattta aaagttgatt tttaatcgaa tttagttcat
    17701 tttgatcggg taaagaattt aattttaaag tataaaattt tggcagagaa tcttttaaaa
    17761 ctttcaaatt cttttcagaa acatcatttt tcaaacgatc gattaaatcc ttaggatcta
    17821 aagattcaag tccagcaaaa aatggtactt ttgtttttac tacattctga tcaagttcag
    17881 ttttgctgac aactataata ttataatctt tattaacaag ttcttcataa tgctttaaag
    17941 ttgcatttgt aatcaaaata aattcaaaag caaacatcat aaaaagtaaa ggtaaaatta
    18001 aagataaatg tgttttaaaa aatttcattc atttttccat tttctatatt aaaacgacga
    18061 taatccactc ttaaattact aggaattcta tgtgttacca ctataacaca agttcctaaa
    18121 agctctctag cagattttaa aagagtccat ataatatcag aagaatactc gtccaaattt
    18181 cccgttggct catcgcaaag caaaagcttt ggattatgag ctaaagccct agccatagcg
    18241 acgcgttgtt gctcaccacc gctaagttga ttaggcaatt tatctgcttt aaaagttaaa
    18301 tttacatgct ttaaaagctt agcagcttga tcatggcata cttttttgct ataaccttta
    18361 atcattaaag gcaacataac atttttttca acactatatt cttgtacaag tttataatct
    18421 tgaaaaataa tccctattct ttgacgcaat tttaaaagtt ctaaatttcc aattttattc
    18481 atcaaagatc cacatacttc aagcttacca gaaataggtt ctaaatctcc ataaaaagac
    18541 tttaaaagcg tactcttacc actcccactt ttacccgtaa taaaaacaaa atcatcatcc
    18601 ttaaaagcaa aactcgcttc tttaataact aattcatcat aacctaaagt aagtttattt
    18661 gcttggatta aattaggcat cctttttcct taatttccct ttttaaattt ttaaattatg
    18721 ctttattttt gcttaatttt caagaaaaat tatattttaa actgaacttt taaaatttct
    18781 tttaattcat ttatcgcttt aatattttct tgaattttaa atggttcttt aaaaacaaaa
    18841 tcaatcgttt tatcaagatg taaataacaa tgttcaggct tattaaaagc tccaaaagca
    18901 acctttaaaa gcaaattctc atcttgttta tagatgcttt caaaatgcaa gaaaaaatca
    18961 tcttttttta tagtaatatt tttaaaattc tgctctattt ttttcaaatc ctctttagaa
    19021 aattcaaccg atgagagatt aaattcattt aactcatagt ttttacactc ttggttaaaa
    19081 ttccacaccc aaagatcata tatatttttt tcttgctttt tccatctatc ttcatatttg
    19141 cttgaaattt ctaaattttc attttttcta agactaaatt ttggagcagg aaaagtcaaa
    19201 aattgttcta gagtaaaatt aaaatactca aaactatctg ttctaagctc aaaacgacca
    19261 ttttgggtta aaaccctagc acattctttg caaaaatctt tcccaataac tcgcctatga
    19321 ggctttttat cccaaggaac aggaaaatgt agaaaaatct tttcaactga ttttgatttt
    19381 aatacactca ataacaatct cgcatcactt tggattagca aaatattatt tacattttgc
    19441 actttagcaa gtttagctac ttgagttaaa gctgggttgt aaatttccac ccctaaaatt
    19501 aaaacatttg gattttcttt tgcttgataa agcaaatgtc ttcctgatcc aaagcctatt
    19561 tctatataaa ttttaccttg aagcttagac aaaagctcat caaaattatc aacgataaat
    19621 ggtgtttttt caattaaagc attgttttta agtccaaaag cttcattgat aatatcctca
    19681 caaaaacctt ctttaaagat ttttaaagcc ttttgcaaat aacctatttt agaaggtttt
    19741 gtatgtttat cgcctttaat cacaaaacca ttttgtgctt ttttaatctg cagaaagaaa
    19801 ctctcttctt gaacctttgt ataaataaga ctaacattat cattcttagc aagccaaaga
    19861 aattcaacat catccttgct ataaggtaga tttatttctt tgatcttttt gcttttaaaa
    19921 tttggcacta ctgagctgcc ttaactttgc ttgaaggttc tgaacgaagc ccagccgaat
    19981 caatagcaat aacttcataa ctatattcca cccctggtaa agcttttaca tcttttaatc
    20041 gcttttcttt aatgccttta aaaacagcat tttgctcccc gccatagcgt cttacttcat
    20101 actcaacagc tctagtatca ttatcgctcc attctaaatt tatcccttcg cttgtgcttt
    20161 gagccaaaat aatactagga gccaaagggt tacctaaagt tttaccttct acaccatctt
    20221 ttggcatagg actttcaaga ccatctttat ccaccattgt tactttataa tacttgcttt
    20281 tacctgctcc ttctactata tcctcataag aatttttatc agtctttgcc aaaacactaa
    20341 aaggaaggaa gcttgagctt gtagaataaa ctttataata agaaaaatct tcatatgtag
    20401 gagcatccca agttaaaatg attttattag aaccatctgt gctagcactt aaatgctcaa
    20461 cttgaggagg caaagccttg cttgtagaac ttacaacttg acttggttca ctctttatcc
    20521 cattaaaact cacagcaatg attctatagc ttgaattttc attaggtttt aaatcactat
    20581 cgatgtattc agcgtttaaa cgatttttta cttctgcaat ttttttaaat tctttatcat
    20641 cacctttagt tctttcaata atataagaat caactctaaa atcaggatgc ggacgccaaa
    20701 taagtttaat acgattaggc aaattagtca cagcttgaac aaaaggaaca gcttcaagtc
    20761 ttggagctgt gctcacttct ataaccttgc catcttctga aatttgtcct tgctcattaa
    20821 agcttttcat catataacga tacttagtac caggctctaa tttagtatct acataatgag
    20881 tttgaaactt atctttaata gtgcctacaa gtttaaaatc aggattttca tcactagaac
    20941 gatataaata aaatccttta atattttcat tatataaagg ctcccattca aaagcaatat
    21001 tactcatatc gctaagactt tttaaacttt caacctttgg caagctttca tttacagcag
    21061 gctctttact tgaagctagc gaattcattt gcgaaacact acaagcgcta agcaaaagag
    21121 ttaaaaaact caagtaaaaa cccaagcgaa atcttttcat cattctctcc taaattaatt
    21181 tgtttaaaca taatattttt aaaatcttcc atcaaaggtg ctttaacaaa aatttgctct
    21241 ttggtttttg gatggataaa atacaaaaaa taagcatgca acattatcct acaatcatac
    21301 ttacccttat aaccatacaa actatcacct aaaatatggc gatttaaact agccaaatgc
    21361 gctctaattt gatgagttct tcctgtaaaa agcttagcag ccatcaaagt taaattttca
    21421 gtttttacta tatttataaa agctgatttt gcgtttttac tgaatttatt ttccttatct
    21481 atggctattt ttttaatagc attagaaggc gaacgcatta aaaatttttc tactataatt
    21541 ttatcttctt ttagtggcaa atcaattaac gcaaggtaaa ttcttcccat gcttttatct
    21601 gcaagctgtt cgcttaattt ttgatgggtg aaattatttt tcgctatcag tatagctccg
    21661 cttgtatctt tatctaatct atggacaaga ccagctctta tctctcctcc taaatttgat
    21721 aaagtatatt ttttttctat taaccaatcc accaaagtgg catttttaac gctacttgct
    21781 ccatgaacga ctaaatttga aggtttattt aaaacaagca agtcttcatc ttcgtataac
    21841 acatcaatat caaaatccac ttcaaactga ggttttatct cattgcaaag ctttaaactt
    21901 gcaatagaaa taatatcacc atttttaagc ttaaatgaat ttttatcttg aattttatca
    21961 ttaacctgta cacaatcttt ttctataagt aaagcaactt gattgcgact ttggtttaat
    22021 tttttagcca aaaatacatc aagccttgaa ttttcatcta ctaaaaaagt ttgcattttt
    22081 tccttagaag ttttgataaa tttaaaattt tagtttataa ttatagcttt atattaccaa
    22141 ctgaaggcaa attttgttta gattagatag aagaatttta actcattttg actatatgca
    22201 acccatttta tttttaccca taattcttat ttcatttttc ttaatctttg aagctaatcc
    22261 ttttttagca gaaaaacagt ttgtttatgc ctgtgtggga ttgtttgctt ttatggtttt
    22321 tttcttcttt cccataagga aatttatttg gattattcct gttgcttatt ggattaatat
    22381 ttttttattg ctaagcgtag atatttttgg ggttgaaaaa ttaggtgcta aaagatggct
    22441 tgaaattcct tttactcact ttactataca accttctgaa atttttaaac ctagttttat
    22501 tttaatgctt gcctatctta tttatcaaaa tcctcctcca aaaaatggat acaagcttaa
    22561 acaattcatc aaacttagct tttacatcat cttgcctttt ttgctaattg caaaagaacc
    22621 tgatttagga agtgctatgg ttttactact tgttggtttt ggagtgcttt ttatcatggg
    22681 aattcattat aaaatttggt taagtattgt tatagctata agtgttagct ctcctattat
    22741 ttatacacat cttttaaaac cctaccaaaa gcaaagaatt catgatttta tttcagaaaa
    22801 accaagttat caagtagccc aatcaatgat agctattgga aatggtggtt taaccggaaa
    22861 atctcaagat gaagctacgc aaactcattt taaattttta cctatttcaa ctagtgattt
    22921 tattttcgct tacatgatag aaagatttgg atttattggg ggattgacat taattatatt
    22981 ttatatttta cttatttttc atctacttag tttaaattat aaacttaaag atgattattt
    23041 tgctagagtt gctattaatt gtgttgcatt atttattttt atttatgcgg cagtaaatat
    23101 ttcaatgact ataggttttg caccagtagt tgggatccct ttgccttttt ttagttatgg
    23161 tggaagttct tttactattt ttatgatttt ttttggaatt ttacagcatt taatcacttt
    23221 tagatatttt tggacggata taaaggctaa ataaaatatt tttaagcatt aataagatat
    23281 aattttatct tttaattcaa cttaggcgga tttatagctc agttggttag agcaaccggc
    23341 tcataaccgg ttggtcgcag gttcgagtcc tgctaaatcc accattctac atataagcta
    23401 tagactcttt ctttaaaaaa taatttttag ttctttaaat atttcaatct tatataaaaa
    23461 agtatgtgat gtgattttct gaaagataaa gtggtggtta gaggcagaat cgaactgccg
    23521 acacgcagat tttcagtctg ctgctctacc gactgagcta tccaaccaca atgatttgat
    23581 aaattaaaaa tgtaattgta tctttttttc tttaatttaa gtttaaatac aaaaataaaa
    23641 ttttatttcc cttaaagttt taataagata gaatacccgc tttagatcat tatcaaatgg
    23701 aaattttttg aaacaatttg gactagatag acgaactttt aaaattttac tagctggtta
    23761 tattattatt gcattgtttg gggctttatt actacattca agctgggcac atacaactcc
    23821 tattgatttt ttggatgcct tttttacaag cacatctgct gttagtatga caggattagt
    23881 agttaagaac actgcggttg attttacctt agcagggcaa attattatct tagctttggt
    23941 gcaaattgga ggcttgggat atatgggtat aggtttattc gtttatatac tcatacgcaa
    24001 aaaagttggt tttagtgcaa gaaatttact aaaagagtct ttattttatc catcaatgga
    24061 tggtttattt aaatttttta aaaaggtttt gctgttcatt tttactatag aattgatagg
    24121 tgctatactt cttaccatgc gttttgccct tgaaatgaat tttaaaaaag ctttatggtt
    24181 tggaattttt cattctatta gcgcttttaa taattctgga tttactatat ttgaacatgg
    24241 gcttatagct tataaacatg atatagcaat taatcttatt atcacttctt tgattattat
    24301 tggagggctt ggatattttg ttttggttga attatacttt tttcaaagaa aaaaattgca
    24361 aaatttaagc ctacatacaa aaatggttgt tgttgcaagt atttttctta ttttctcttc
    24421 aacgcttatt atttttgctt ttgaatactc aaatcctcaa actataggac atttttcatt
    24481 tttcgataaa attttaagct catattttat cgctattaat taccgcacag caggatttaa
    24541 caccttagat atgggacatt tgcatgatgc aagcttattt tttggatcat tgtttatggt
    24601 tattggtggt gcaccaggtg gaacagctgg gggtatgaaa gtaacaactg taatggtttt
    24661 attgctctat gcttattgga gtatccgcga tggaagagtt agaatttttg gacatgaaat
    24721 tccaagagaa actatatcta aagcttttat tatagctgta ggttcagctg tttatatagt
    24781 aatagctgtt attttgcttt ccttgctaga gtcaaaattt gattttatag ccttgctttt
    24841 tgaaacttct tcagcttttg caactgtagg aatttcagta ggaaatggtg gaactttatc
    24901 tttatgcgct ttgtttagtg atcctagcaa ggtgattatc atcattatga tgctaagtgg
    24961 taggataggt gtttttgctt ttttactctc ggtattcaaa caagacaaag ctattcattt
    25021 aaaattccct gaaggaaagg ttaatttata aaggtaaaat cgtgaaaaat cttaattatg
    25081 gaatcatagg acttggaaaa tttggctcag ttgtagcaga tgaactcatt gctggaggtc
    25141 atactgttat cgttgcggat aaagatgagg aagctttaaa aagtatacaa aatcctccaa
    25201 gctatgctta tattttagat tctacaaata tttcagccct aaaagaagca ggctttcatg
    25261 atgttgaagt tgttattgtt agcataggag aaaatgttga aaaatcaatc cttactctta
    25321 tggcgcttaa agatataggt gttaaaaata tcattgctaa agcaacctct aatatccatg
    25381 gtcaaattct ttctaagtta ggtgcaacaa aggttattta tcctgaaaaa gaaagtgcta
    25441 aaagactagt aaaagaattt ttaactaaag atgctgatta tgaagttttt gatctttcag
    25501 caaatactat acgagctatt aagatcaata tagatgaaaa attagcagga aattctttaa
    25561 aacatgtagc acaaaatatg aaagtgattt cttataaaaa attaaatagc gactgggaaa
    25621 tactacctga tttagaaacc acgacagttt atagtggaga tgttgtaata ctccttggaa
    25681 cagttaaaga gcttagagaa tttgaacatt aagcaagatt taaagcctta caagccttta
    25741 caaaacgctt taaggctgtt ttttctttgg tagaaatttt atgatatata acttcatcta
    25801 aataatatct aacatctttt atatctaaat cccttgtttt ggcataattt tgcagtatat
    25861 aataaggaat tttaatcttt gtttctggaa attttttcaa aatttgttta tataaagctt
    25921 ttttttgcac acaagaaaat ctagcaaaaa caaaaggcaa tcctgttttt tcgtgccatt
    25981 ttgcacataa atcgatatat ctagaaggat cttttagata aagctttaaa gccttatcac
    26041 ctataattac ttttccatct tgttttaata ctttagctaa agcatttgaa gttgctgaac
    26101 ttggatcttt ggcatttgat gtattttttt ctactaaaac acttaaaact cttttattag
    26161 cacaaatacc caaatctaaa tttttatatt tttttctagc actttctatg cttgaaatga
    26221 tagctgcatc aattcttcta taaaataaat ctttatttag cttacttgga actccttttt
    26281 tatactccat acttgcttta taaccattag gtaggggata tttcttaaga tatatatgta
    26341 aaggtaaaag attaatataa tcaatttttc caaaaatcat ctctcttaaa gagtgttaaa
    26401 cactctatct cctgcatctc caagccctgg gataatataa cctttttcat ttaaaccttc
    26461 atcaatacaa gccacaaaaa cttctacatc atcatgcatt tggctaaatt ttttcaaacc
    26521 ttgtggagca gcaagtatgg atataaattt tattttttta actccttggc tttttaaaaa
    26581 attacaagcc tctatagcag tcccacctgt agcaaacata ggatctataa caatagcagt
    26641 gcgttttttt gcatctttgg gaagtttttg aaaataaaaa tccgccttta aagtttcttc
    26701 atttctcaca aatcccaaaa atccaacact tgcatcagga atcatcttaa aaacgctttc
    26761 aagcattcct aatgcagctc ttaaaatagg acaaatcata atcttttcat caagtttttt
    26821 tactgtagtt ttttgtatag gtgttgaaat ttcaatttct tttaaagaaa aatctttgct
    26881 cgcttcaaaa agcaaaaaag atgaaatttc atcgattaac atacgaaatt gaaagggctt
    26941 tgtctcttta gcccttaaaa ttcctaattt atgttcgatc aatggatgat tgatacaatg
    27001 aatatttttc attttaagct ttcaaaataa gctttctcat caaaattttt caccttagcc
    27061 acaccatctt ttaccgcagc tgctgctaca gctgtactta ctgcagcttt tactctttca
    27121 tcaaaaggtt ttggtataac ataatctctt ccaaattcta aagtgcttaa attataagct
    27181 tttttaactg catcacttac aggaagtttt gcaagatctg ctaatgcttt agcagcagct
    27241 actttcatat tttcagtgat tttacttgca cgcacatcta aagccccacg gaaaataaaa
    27301 ggaaaaccta aaacattatt gatttgatta gcataatcac ttcttcctgt tcctacaatc
    27361 gcatcttttc taagtctaac tacatcttca ggcatcactt caggaatagg atttgccaaa
    27421 gcaaaaatca caggatcttt tgccatgctt aaaaccattt catcatcaag aatttttggc
    27481 gcactaagcc ctaggaaaac atcagcccct tttaaaactt cttttaaagt cttttcctta
    27541 gaatcaacag caaattcaag tttttgagga gttaaatcat ttctatcttt agaaatcact
    27601 cctttactat ctactaaaat aatattttca acccctaaat ttctatacat cttagcactt
    27661 gctatacctg cggcacctgc gccacttaca accaccttaa tgtctttaaa ttttttaccg
    27721 cttatctcca tagcattcat aagccctgca gttgaaataa tagccgttcc atgctgatca
    27781 tcatgcatta caggaattcc taaatcttgc aaagccgctt cgatttcaaa acattttggc
    27841 gcagctatat cttctaaatt tatcccgccc acagtcggag ccaaagcctt gcaaaaattt
    27901 acaatctctt ccgcactatg aacattaatt tctatatcat aagcattgac atttgcaaat
    27961 tttttaaaca aacaagcctt accttccata acaggttttg aagcctgtgc tcctatgttt
    28021 ccaagtccta aaacagcaga accatcgcta actatagcta ctaaattagc cttatttgta
    28081 taagtataag caagctcatt atctttagcg atttcaaggc aaggttctgc aactcctggg
    28141 ctatacgcca aagatagatc ataacttgta gccattggct tacttggtac aatatcaatt
    28201 ttcccaccta aatggtattt taaagcttct tcttttaaat tcattttatt ttcctctaac
    28261 ttttaaaaaa ttttctattc tttttttaca ctcatcaacc cctaaaaatt ctaatacttc
    28321 aaaaatacta ggacttaccg cactccctgt taaagctatg cgtataggct gagccaaatc
    28381 ttttaacttt gcttcttttt tttctaaaaa atcatttgta aaatcttcaa aatctttacc
    28441 tgttttttga tctttaagtg tattagcaaa tgcctggagc aattctaaat tattttcgtt
    28501 aacaaatttt tgcactgcat tttcatcata attttgcggt gcattaacta tgctttttgc
    28561 accattgata atatcatgca aggtttttgc acgctctctt aataaatcaa gtaaaaatcc
    28621 tgcctttcca taaacagata aatcaaagcc gagatcttta agctgacggt taatctcttc
    28681 aaaaggtaaa gttttaatat aatgagcatt caaccattca agctttttag cattataaca
    28741 agatgcgctt ttattgatat gataaggatc aaaaagtttt ttcaaatctt ctagtgaaaa
    28801 aacctcatca tcaccatgac tccaacctaa acgcacaaga aaattaagca aagcttgagg
    28861 taaaattccc atttctttgt attccataac atcagttgcc ccatgtcttt ttgaaagctt
    28921 tttaccatct tctccatgta tcatagccac atgaaaaaat ttaggaattt taaaacccaa
    28981 tgcctcataa agcacaattt gtttaggagt atttgaaaga tgatcatccc cacgaatcac
    29041 atcacttacc cccattaaag catcatcaat aacaacagta aaattataag ttggagttcc
    29101 atcacttctt gcaatgataa aatcatccat tatatcctct gctttaaatt ttacctcgcc
    29161 tttaacccca tcttcaaaaa caatctcgcc gctttgaggt gctttaatac gcacaacagg
    29221 ttctataccc tgaggtggcg tgcctttaaa ttctctatat cttccatcat atcttgggcg
    29281 ctctttggcg gcttcttgct tggcgcgcaa ttcttctaat tcttctttac tcatataaca
    29341 ataatacgct ttaccttcat ctaaaagctt tttgacatat tctttataaa gatcaaaacg
    29401 ctctgattgg taagttactt ctccatcatg ttctaaaccg caccatttaa aagcttcgat
    29461 aattgcttta gtagcttctt tggaatttct ttttaaatcc gtatcttcaa tacgaagtaa
    29521 aaaatttcca ccattttttc tagcgtataa ataattataa agagctgttc taagtccacc
    29581 tatgtgcaaa taccctgttg ggcttggagc aaaacgcgtt gtaagttttt cgtgcatttt
    29641 ttgccttttc ttaaattttt attgatataa tgcgatattt atacttaaat aaaggtttga
    29701 aatgaaaaaa attttattaa gttttgcatt ttttgcaagt ttagctagtg caaataccat
    29761 taatgctata gctgtagttg tggataaaga gcctatcaca acttatgata tagatcaaac
    29821 tatgaaagtg cttaaaattg atagaaataa agctttaggt gtactcatca atgaaaaaat
    29881 ggaaatttca caaatgaaac aactgggtat tgtagtcaat gatctagagc ttgatgatgc
    29941 tataaataaa atgcttgctc aaaacaaaac cactttaaat gctttcaaaa caaatttaaa
    30001 atccaaaaat caaagctatg aacaatttcg tgtaaatttt aaaaaagatt tagaaaaaag
    30061 aaaactttat gaaaaaatcg caagtatggc aaaaactgat tttagtgatg atggagcaaa
    30121 aaaatttttc gaacaaaata aagataaatt cactttttat acacaaatta atacaaatat
    30181 ttatttatca aacaatcctc aaactttaga aaatatcaaa aatacaaaaa aaacaatcct
    30241 taaaccacag aatacatctt taaacacaag caatgccgat ccaagacttt tagggctttt
    30301 atcacaaatt cctgttggag gcttttcccc tgttttaaat ggaaaaaatg gctatgaact
    30361 ctatgaagtt aaaagcaaag atggggcaca aactcctgaa tatgaacaag ttaaaaatga
    30421 agttttaaac gcttatgtaa gcgaacaaag acaaaatttc atacaggatt attttgataa
    30481 actccgctct aaaatcaata tagaatattt aagataaaaa ttacaattaa aatttccctt
    30541 taattaggga aattttaatg tcttgcaaga taatttgtat cgtagttatt attaataaaa
    30601 tcaggatttt ccatcataga aagatgaaaa tctttggttg tttttatccc acttataagc
    30661 aactcatcta aagctacttt catttttgca atagctttat tacgatcttc tgcccaaact
    30721 acaagtttgc ctatcataga atcataataa ggaggcacgc tatagtcttg ataacaatga
    30781 ctttccattc tgacattgcg tcctgcgggt ggaatgtatt tagtaatctt acctggactt
    30841 ggcaagaaag ttttggaatc ttcggccgtg attctacatt ctatagaatg cccatttaat
    30901 ttaatacttt cttgagatgg taaagcataa ccttctgcta ctttaatcat ttgttctatg
    30961 atatcaatcc cacttaccat ttcacttaca cagtgttcaa cttgcaaacg cgtattcatt
    31021 tctataaaat aaaaatccaa atttttatct accaaaaact caaaagttcc cgcaccttca
    31081 tatcctatag ctttagctgc cttaatagca gtttcatgaa gtctagtgcg tgttttttca
    31141 tcaagcaaaa tcgcagggga ttcttctata agtttttgat ggcgtctttg catagaacaa
    31201 tctctttcgc ccacatgaat cacattgcca aaactatctc ctataacctg cacttctata
    31261 tggcgtggat tttgtatgta tttttccata tacatagttc catcgccaaa tgctgtcata
    31321 gcctcgcttt cagccgacca atacgctttt tcaagatctt tttcattttc aaccacacgc
    31381 ataccacgac caccgccacc tgcagctgct tttaaaatca caggataacc tatttctttg
    31441 gcaagttttt tagctgcttc agctcctgcc aaagccccat cgcttcctgg gatcacaggt
    31501 acgcctgctc tttgcatgac ttgttttgct tttgatttat cactcattaa attcatagct
    31561 tccacagaag gacctataaa tttgatgtta tgtttagcac aaatttcaac aaaattttga
    31621 ttttcactta aaaatccgta tcctggaaaa atcgcatctg cttcagcaat ttcagctgct
    31681 gtaataatag ctgggatatt taaatagctt tcagaacttc ttgctttgcc tatacaaatg
    31741 cttgcatcag cgtattttaa atacaaagca tctttatctg cttcagagta cacacaaatt
    31801 gcttttttac ccatttcttt aatcgttctt aaagcacgca gtgctatttc tccacgatta
    31861 gcaattaata tgcttttaat ttccatttta taatttctcc accgcaaata aaggcattcc
    31921 aaattctaca ggctgaccat cagcaactaa aatttcagcg atcctacaat caaattccgc
    31981 ttcaatttca ttcatgattt tcatcgcttc gataatagct atagtatcgc cttttttaac
    32041 cgtactacct acttttacaa aaggtgctgc acctggactt ggagcttgat agaaagttcc
    32101 taccataggg ctgtttatac ttggtttgtt tgattttaca ctttgactag gttgagcttc
    32161 gtttacaacg cttacattga taggttgtgg agctggaact ggaggacaaa caggggctgg
    32221 aacatcgcag cacatatctc tttcaagttc tatttcaaaa ccatcttgtt ctttgatctt
    32281 aattttacta atatttgctt cagcaaaaag gtttactaac tctttaattt cttcttttgt
    32341 cataaaattc tcctacaaaa tttaagaact taaccttgta ttatataaaa aaacttgaaa
    32401 tttaacttta aaaaagaaaa aaatcataaa aaatatagat tttttaggtt ataatcctta
    32461 caaacaatta caaatattaa aaaggttaaa aatgggctta aaagcggata attggataag
    32521 aaaaatggca ttagaacaca agatgatcga accattttgc gaagcaaata taggaaaagg
    32581 tgtggtaagc tatggacttt caagctatgg ttatgatata cgtgtagggc gtgagtttaa
    32641 aatttttacc aatgttaatt caactgtagt ggatccaaaa aatttcgtag aagaaaatgt
    32701 agtagatttt gaaggcgatg tatgtatagt tcctgcaaat tcttttgccc tagccagaac
    32761 tatagagtat tttaaaatgc ctgataatgt cttagctatt tgtcttggca aaagcactta
    32821 tgcaagatgt ggcatcatcg tcaatgttac cccttttgaa ccaggttttg aaggacatat
    32881 cactatagaa atttcaaata ctacgccttt acctgcaaaa atttatgcca atgaaggtat
    32941 agcgcaagtg ttgtttttgc aaggcgatga aaaatgtgac accacttata aagataaaaa
    33001 aggcaagtat caagcccaaa ctggcattac cttaccaaga attttaaaat aggaacactt
    33061 attgctttaa tttaaaaaaa cttaagcaaa ggaaggcaaa atgtttaaca aaaaaaatat
    33121 cttaatcacg ggcggaacag gctcttttgg aaaaacttat actaaggttt tgctagaaaa
    33181 ctataaacct aataagatta tcatttattc tcgtgatgag ctcaaacaat ttgaaatggc
    33241 aagcgttttt aatgctcctt gtatgcgtta tttcatagga gatgtaagag ataaagagcg
    33301 tttaagtgct gctatgcgtg atgtggattt tgttatacat gctgctgcga tgaagcatgt
    33361 gcctattgct gaatataacc ctatggaatg tataaaaaca aacatccacg gcgcgcaaaa
    33421 tgtcatagat gcttgttttg aaaatggggt taaaaaatgt atcgctctta gtacggataa
    33481 ggcttgcaat cctgtaaatt tatacggtgc aaccaaactt gcaagcgata agctttttgt
    33541 cgctgcaaac aacatagcag gtaacaagca aacacgcttt ggtgttacaa gatatggcaa
    33601 tgttgtaggt tcaagaggtt cagtggtgcc tttctttaaa aaactcatca gcgaaggagc
    33661 taaagaactt cctatcaccg atacgagaat gactcgtttt tggatcagcc ttgaagatgg
    33721 agtaaaattt gtactgagta attttgaaag aatgcatgga ggagaaatct ttatccctaa
    33781 aattccttcg atgaaaatca ccgatctagc ccatgctcta gctcctaatt taagccataa
    33841 aatcataggc ataagagcag gagaaaaact acatgaaatc atgatttcaa gcgatgatag
    33901 tcatttaacc tatgaatttg aaaactacta tgccataagc cctagcatta aacttgtaga
    33961 taaagataat gactttagta tcaatgccct aggcgaaaaa ggacaaaagg taaaagatgg
    34021 tttttcttat agttcggata ataatccttt atggacaagc gaaaaagaac ttttagaaat
    34081 catcaatcac accgaaggtt tttaaaatgc ttacttattc tcatcaaaac atcgatcaaa
    34141 gcgatataga tgcgcttaca aaagctttaa aagatgaaat tttaacaggg ggtaaaaagg
    34201 tagatgaatt tgaagaagcc ctttgtgaat atgtgggcgt aaaacacgct tgtgtattaa
    34261 actcagccac ttcagccctt catcttgcct atacagcact aggcatcaaa gaaaaaatcg
    34321 ttttaaccac tcctttaacc ttcgctgcta cggctaatgc ggccttaata gctggagcta
    34381 aggtagagtt tatcgacatt aaaaacgatg gcaatattga tgaaaaaaaa ctagaagcaa
    34441 gacttttaaa agatagtaaa aatataggag ctattagcgt ggtggatttt gggggaaata
    34501 gcgttgaaat agatgaaatt tcaagccttg ctaaaaaata caatatccct ttaatcgatg
    34561 atgcaagcca tgctttaggt gctttgtata aaagtgaaaa agtaggaaaa aaagccgatc
    34621 tttctatatt ttcttttcac cctgttaagc ctatcactac ttttgaaggt ggggctgtgg
    34681 tgagtgataa tgaagagctt atcgataaaa tcaagctttt aagaagccat ggtattgtta
    34741 aaaaaaggct ttgggatagc gatatggtag aacttggcta taattaccgc ttaagtgatg
    34801 ttgcttgtgc tttagggata aaccagctta aaaaactcga tcataatctt gaaaaaagag
    34861 aagaaatcgc aagtttttac gataaagaat ttgaaaaaaa tccttatttt tccacgataa
    34921 aaatcaaaaa ttataaaaaa agctcaagac atttataccc tatcttgctt tttcctgaat
    34981 tttattgtca aaaagaagag ctttttgaaa gcttgcttca tgcaggagtt ggtgtacagg
    35041 tgcattacaa acctacttat gagtttagtt tttataaaaa actcttaggg gaaatcaaac
    35101 tccaaaatgc ggataatttt tacaaagccg agcttagcat accttgtcat caagaaatga
    35161 atctaaaaga tgcaaaattt gtcaaagata ctttatttag cattcttgaa aaagttaaaa
    35221 agggatattg tggataagct agactttaga agccaagatt ttagccaaac tggaaaggct
    35281 atgtatgaac tagcttgtga actttttcct atccctagaa gtatcacagg gcaaggtttt
    35341 agagatagct tagaaatttt aaat
//
LOCUS       DAZAND010000005        34544 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.005, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000005 DAZAND010000000
VERSION     DAZAND010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 34544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34544
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.005"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..317
                     /locus_tag="ACHDOB_000179"
     CDS             <1..317
                     /locus_tag="ACHDOB_000179"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HFN3325138.1"
                     /translation="FLRLLIENSRLEYIPQIVKELERQKAFKENIFVGIVYSKEKLSQ
                     ENLKDLEVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKALQNKLNEYILK
                     II"
     gene            331..1836
                     /gene="atpA"
                     /locus_tag="ACHDOB_000180"
     CDS             331..1836
                     /gene="atpA"
                     /locus_tag="ACHDOB_000180"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HFN3325139.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            1845..2729
                     /gene="atpG"
                     /locus_tag="ACHDOB_000181"
     CDS             1845..2729
                     /gene="atpG"
                     /locus_tag="ACHDOB_000181"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit gamma"
                     /protein_id="HFN3325140.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKAVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            2754..4151
                     /gene="atpD"
                     /locus_tag="ACHDOB_000182"
     CDS             2754..4151
                     /gene="atpD"
                     /locus_tag="ACHDOB_000182"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HFN3325141.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            4155..4544
                     /gene="atpC"
                     /locus_tag="ACHDOB_000183"
     CDS             4155..4544
                     /gene="atpC"
                     /locus_tag="ACHDOB_000183"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit epsilon"
                     /protein_id="HFN3325142.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHATLVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            4544..5098
                     /locus_tag="ACHDOB_000184"
     CDS             4544..5098
                     /locus_tag="ACHDOB_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HFN3325143.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            5107..5496
                     /locus_tag="ACHDOB_000185"
     CDS             5107..5496
                     /locus_tag="ACHDOB_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HFN3325144.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            5499..6278
                     /locus_tag="ACHDOB_000186"
     CDS             5499..6278
                     /locus_tag="ACHDOB_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HFN3325145.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGASSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEAKVKND"
     gene            6288..7496
                     /gene="tolB"
                     /locus_tag="ACHDOB_000187"
     CDS             6288..7496
                     /gene="tolB"
                     /locus_tag="ACHDOB_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HFN3325146.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYALNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQASVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            7573..8070
                     /gene="pal"
                     /locus_tag="ACHDOB_000188"
     CDS             7573..8070
                     /gene="pal"
                     /locus_tag="ACHDOB_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HFN3325147.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            8074..9021
                     /locus_tag="ACHDOB_000189"
     CDS             8074..9021
                     /locus_tag="ACHDOB_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFN3325148.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            9036..9599
                     /gene="slyD"
                     /locus_tag="ACHDOB_000190"
     CDS             9036..9599
                     /gene="slyD"
                     /locus_tag="ACHDOB_000190"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFN3325149.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEISENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGGGGCCGGGGCGCH"
     gene            9647..10519
                     /gene="fabD"
                     /locus_tag="ACHDOB_000191"
     CDS             9647..10519
                     /gene="fabD"
                     /locus_tag="ACHDOB_000191"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HFN3325150.1"
                     /translation="MGKDFYENSIKAKELLQNASDFCKIDFKHLLFEENEKLNQSEFT
                     QPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNGAFDFLEALSLVNKRGL
                     FMQEDCVKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAANYNCDGQIVVAGLKPDL
                     ASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEKVLKPNFKAVISNVNAK
                     IYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGASVLKGLNKKITSKETYA
                     LTNMNDIDEFLKVI"
     gene            10516..11205
                     /gene="pfs"
                     /locus_tag="ACHDOB_000192"
     CDS             10516..11205
                     /gene="pfs"
                     /locus_tag="ACHDOB_000192"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HFN3325151.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            11202..11957
                     /locus_tag="ACHDOB_000193"
     CDS             11202..11957
                     /locus_tag="ACHDOB_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HFN3325152.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGVIVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHTESFWLQKA"
     gene            11962..12483
                     /locus_tag="ACHDOB_000194"
     CDS             11962..12483
                     /locus_tag="ACHDOB_000194"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HFN3325153.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            12483..13097
                     /gene="recO"
                     /locus_tag="ACHDOB_000195"
     CDS             12483..13097
                     /gene="recO"
                     /locus_tag="ACHDOB_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HFN3325154.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNPITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            13094..13504
                     /gene="ybeY"
                     /locus_tag="ACHDOB_000196"
     CDS             13094..13504
                     /gene="ybeY"
                     /locus_tag="ACHDOB_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HFN3325155.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIECFNLPKSLIVRTLEIK"
     gene            13624..14826
                     /locus_tag="ACHDOB_000197"
     CDS             13624..14826
                     /locus_tag="ACHDOB_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
                     /protein_id="HFN3325156.1"
                     /translation="MINGINSYSNYNYTNTFSNTTSNTKSSNAIANNNLVSDKSQAVD
                     KILGYGVDKEGFFTSDFNEAAGLPKDYKIYADGLNNFVNNFIKRQPFYSQIDIAKTIG
                     NAYNSFSSFVKDKGLGESFQEQDLKNLSQKDGVNYWQELQSDNAFIWKLTDENIADLG
                     SNKYQIHDNKISKGGALIAFFINNLSTIKGQTTLLGKLAGLNSDTDNNEIKEFLSFMN
                     KNPLKYSYEQDGWGNPMGDSLSIWNYINRAKNLGDDKLIKTIKNLGDEYNKLINSNMS
                     LEEFKTKYLDFKQRHDEFVKSLEEAEKAKGVDYSNPLKNTNNKETSEEGKEKPFKPIQ
                     AESKNKETYKDDNTRSELVKKLLKDKFSTSKELELLFGMKFSDDDAGEFNKILSLNST
                     PKSIDIKA"
     gene            complement(14851..15777)
                     /locus_tag="ACHDOB_000198"
     CDS             complement(14851..15777)
                     /locus_tag="ACHDOB_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase"
                     /protein_id="HFN3325157.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFVSIHGRTRKQLYSGKADYESIASAKESVKIPVIANGDINAQNAKEVYEITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GYKDASAFRDEVNRIDNTEKMRKKIEEFFSLT"
     gene            complement(15774..16760)
                     /locus_tag="ACHDOB_000199"
     CDS             complement(15774..16760)
                     /locus_tag="ACHDOB_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325158.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFVYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRAVAQLFKTLKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYSKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSAAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAHLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKINLNQLIQ"
     gene            complement(16750..17112)
                     /gene="dksA"
                     /locus_tag="ACHDOB_000200"
     CDS             complement(16750..17112)
                     /gene="dksA"
                     /locus_tag="ACHDOB_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HFN3325159.1"
                     /translation="MKKNEIQNFKNILEERKKTILENLQSNSNEIEALHNSVPSDSVD
                     FSIIETGSQIDFTISTNLKEELIEIENSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(17124..17573)
                     /locus_tag="ACHDOB_000201"
     CDS             complement(17124..17573)
                     /locus_tag="ACHDOB_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HFN3325160.1"
                     /translation="MQVNIFCIQKSDEFKTWSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKELTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(17575..18417)
                     /gene="accD"
                     /locus_tag="ACHDOB_000202"
     CDS             complement(17575..18417)
                     /gene="accD"
                     /locus_tag="ACHDOB_000202"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HFN3325161.1"
                     /translation="MNFADIFSKIRRQQPSVKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAVQRAITSKTPLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGTDLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(18426..19148)
                     /locus_tag="ACHDOB_000203"
     CDS             complement(18426..19148)
                     /locus_tag="ACHDOB_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HFN3325162.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDENQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKDNPKQMILDPLDGSSNFVSKIPFYGTSIALI
                     EKDQAKSAFVCNLVSQEIFAFNNNQSFKSNLSDPKYSPLTPNLFSKIGIVEKISLYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTVAALTIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(19148..21367)
                     /gene="bamA"
                     /locus_tag="ACHDOB_000204"
     CDS             complement(19148..21367)
                     /gene="bamA"
                     /locus_tag="ACHDOB_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0071709 - membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HFN3325163.1"
                     /translation="MKKHLISICALVAIANAATIKDIKFIGLNHLSNTSAINITGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNRILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLINPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEVGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            21444..22271
                     /gene="tyrA"
                     /locus_tag="ACHDOB_000205"
     CDS             21444..22271
                     /gene="tyrA"
                     /locus_tag="ACHDOB_000205"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HFN3325164.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALRL
                     GLIHELIEFKDLALCDMIFVATPVNAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            22351..23724
                     /locus_tag="ACHDOB_000206"
     CDS             22351..23724
                     /locus_tag="ACHDOB_000206"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HFN3325165.1"
                     /translation="MAKRKGKTYLSVLILVLIVILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHVKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGRIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKV
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEELIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            23724..24608
                     /gene="lpxC"
                     /locus_tag="ACHDOB_000207"
     CDS             23724..24608
                     /gene="lpxC"
                     /locus_tag="ACHDOB_000207"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HFN3325166.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDDRGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYISYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            24647..25048
                     /locus_tag="ACHDOB_000208"
     CDS             24647..25048
                     /locus_tag="ACHDOB_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HFN3325167.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            25057..25935
                     /gene="thrB"
                     /locus_tag="ACHDOB_000209"
     CDS             25057..25935
                     /gene="thrB"
                     /locus_tag="ACHDOB_000209"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HFN3325168.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALVKKMQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            25960..26217
                     /locus_tag="ACHDOB_000210"
     CDS             25960..26217
                     /locus_tag="ACHDOB_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HFN3325169.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEKEDKILQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            26204..28816
                     /gene="infB"
                     /locus_tag="ACHDOB_000211"
     CDS             26204..28816
                     /gene="infB"
                     /locus_tag="ACHDOB_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HFN3325170.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKVEKENAKEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVKN
                     SNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDIS
                     LDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPPKK
                     IEKKEVEEVSSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIEI
                     LAAEFGIEINIINEADEFDYVKDYEEEIDEKDLVTRAPVITIMGHVDHGKTSLLDYIR
                     KSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVVA
                     ADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGSY
                     EFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATIIV
                     QNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIAV
                     KTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSLE
                     ALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERAK
                     DKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCMV
                     TEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVGD
                     YIESYKEVQEQASL"
     gene            28813..29175
                     /gene="rbfA"
                     /locus_tag="ACHDOB_000212"
     CDS             28813..29175
                     /gene="rbfA"
                     /locus_tag="ACHDOB_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HFN3325171.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDGNLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            29165..29587
                     /gene="rimP"
                     /locus_tag="ACHDOB_000213"
     CDS             29165..29587
                     /gene="rimP"
                     /locus_tag="ACHDOB_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HFN3325172.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSRIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFIQW"
     gene            29646..31217
                     /locus_tag="ACHDOB_000214"
     CDS             29646..31217
                     /locus_tag="ACHDOB_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN3325173.1"
                     /translation="MLENKCDWKISKADQNGNVYYYFPKDEDEFKEAVVKNGGMSVYV
                     YQEGKFIDEFHTKSQGDKWTSSILNYLKTMSKDGGIFYRYYKNCKFFAIPKNTFSKDD
                     FKIIKDNINNNIPLNQILYGPPGTGKTYHTIDKALEIFGENLESRDEKKAKFDEYARK
                     GQIVFTTFHQSYGYEEFVEGIKPVMNNEANSQEIQYKIKDGIFKDFCDKALVVKQNFN
                     FNQIKDDFLDHCREKKSIIYKNKEYKFEEPNNLITGNLKIHINYIRDMIEQIGLSYGN
                     LSDIEIEGYIRLKIDSGDNIINNYKIILDYFYYKYINFSFVFVIDEINRGNVSKIFGE
                     LITLIEPSKRIGEKEELKVKLPYSGEEFGVPKNVYIIGTMNTADRSITSLDTALRRRF
                     EFIEMMPDVSKLSMDCEGINLQELLKAINTRIEYLLDREKTIGHAFFISVENLESLKK
                     VFKNRIIPLLQEYFYNDYALIDAVLNKNGMLEISVENKDYLKNMTEFIESDKVVYKFS
                     DSNNWSKDTFIKIYE"
     gene            31217..32554
                     /locus_tag="ACHDOB_000215"
     CDS             31217..32554
                     /locus_tag="ACHDOB_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HFN3325174.1"
                     /translation="MKTSNTFSIIEHQAFSKEDLKEIFKEKAEGFYKDLEDFAKNNEN
                     LLGFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLKRYYEL
                     DNISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFL
                     DEFDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLDIAP
                     NRLIKSTLNFLKSKTSLNKFRLIKAMQMLDEVEFSKNYEKDFSYKISRHFDYYENLLL
                     WCKIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPTQDIKVQNNGKYLI
                     SKNDEKCFMLKPDLYIENKMILDTKWKIPNDSEDEKKQGIEQSDLYQMFAYACKFKIY
                     DIKLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVLFAPLPF"
     gene            complement(32543..33346)
                     /locus_tag="ACHDOB_000216"
     CDS             complement(32543..33346)
                     /locus_tag="ACHDOB_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HFN3325175.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKHYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MILASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLVHLIGKFLKR"
     gene            complement(33339..34193)
                     /locus_tag="ACHDOB_000217"
     CDS             complement(33339..34193)
                     /locus_tag="ACHDOB_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HFN3325176.1"
                     /translation="MLFFEISNLNYTYDNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEENCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            complement(34206..>34544)
                     /locus_tag="ACHDOB_000218"
     CDS             complement(34206..>34544)
                     /locus_tag="ACHDOB_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HFN3325177.1"
                     /translation="LNLQIASKLEKLKNRDFVVYHPSWTYFAKRYNLTQIPVEILGKE
                     PKSKDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDHLSYDWENELL
                     KTADAFSHNL"
BASE COUNT        12494 a         4506 c         6085 g        11459 t
ORIGIN      
        1 attttttaag acttttgatt gaaaattcaa gattagaata cattcctcaa atagttaaag
       61 aacttgaaag acaaaaagct tttaaagaaa atatttttgt tggtattgta tattctaaag
      121 aaaaattaag tcaagaaaat cttaaagatc ttgaagtcaa acttaacaaa aaatttgatg
      181 caaatattaa actaaataat aaaatcagtc aagatgatag tgttaaaata gaattagaag
      241 aattaggtta tgaactttct ttttctatga aagctcttca aaataagcta aacgaatata
      301 tattgaaaat tatctaagga gaaaaagtaa atgaaattta aagctgatga gatcagttca
      361 ataatcaaag aaagaattga aaattttgat ttaaatcttg aaattgaaga aacaggaaag
      421 attatttctg tagctgatgg tgttgctaag gtatatggac ttaagaatat tatggctgga
      481 gaaatggtag aatttgaaaa tggtgataaa ggaatggcct taaaccttga agagtcgagt
      541 gtaggtattg ttatacttgg aaaaggagaa ggtttaaaag aaggtgcttc tgtaaaaaga
      601 cttaagaaat tacttaaagt tccagtaggt gaggctttga ttggtcgtgt tgtaaatgct
      661 ttaggtgagc caattgatgc taaaggtgtg atcaatgcta atgaatatcg ttttgttgaa
      721 gaaaaagcaa aaggtattat ggcgagaaaa agtgttcatg agcctttaca tacaggaatt
      781 aaagctattg atgcgcttgt gccaattggt cgtggtcaaa gagagcttat cataggtgat
      841 agacaaacag gtaaaactac tgttgctgtt gatactatta tatctcaaag aggtcaagga
      901 gttatctgta tatatgttgc aattggtcaa aagcaaagta cagtggcaca agtggttaaa
      961 agactagaag aacatggtgc tatggaatat actattgttg taaatgctgg tgcttcagat
     1021 cctgcggctt tacagtactt agctccatat actggtgtaa ccatgggtga attttttaga
     1081 gacaacgcaa aacatgcttt aattgtttat gatgatttga gcaagcatgc tgtagcttat
     1141 cgcgaaatgt ctttgatttt acgtcgtcct ccaggtcgtg aagcttatcc aggcgatgtt
     1201 ttttaccttc attcaagatt gcttgaaaga gcaagcaagc taaatgatga attaggtgct
     1261 ggttctttga cggcattgcc gataattgaa acacaagcag gagatgtttc tgcttatatt
     1321 ccaactaatg ttatttcaat tacagatgga caaattttct tagaaactga tttatttaac
     1381 tcaggaattc gtcctgcaat taatgttggt ttatcagtat ctcgtgtagg tggggctgct
     1441 caaattaaag ctacaaaaca agtttcaggc acattaagac ttgaccttgc tcaatataga
     1501 gagcttcaag cttttgcaca atttgctagt gatttagatg aggcaagtag aaaacaactt
     1561 gaacgtggac aaagaatggt tgaactctta aaacaaccac cttattctcc gcttagcgtt
     1621 gaaaaacaag tagttttaat ttttgcagga accaaaggtt tcttagatga tattgctgtt
     1681 tctagaatta aggaatttga agatggaatt tatcctttta ttgaggcaaa acatccagat
     1741 atttttgagc aaattcgctc taaaaaagct ttagattctg atttggaaga aaaactagct
     1801 aaagccatta atgagtttaa agcaaatcat ttataaggtc ttttatgtct aatttaaaag
     1861 aaattaaaag aaaaattaaa agtgttcata acactcaaaa gactacaaat gctatgaagc
     1921 tagtttctac tgctaagtta aaaaaagcag aagaagcagc taaaagatca aaaatttatg
     1981 cacaaaaaat cgatgaaatt ttgagtgaaa tttcatttca gatcaataaa attgttcaca
     2041 atgaagatga tgtgcgttta tctttgtttc ataaaaaaga acaaattaaa actgtagatt
     2101 taatatttat cactgcagat aaaggcttat gcggtggttt taatattaag actttaaaag
     2161 cagtaagtga aatgctaaaa gaatatgaag caaaaaatat taatattcgt cttagagcta
     2221 taggtaaaac tgggattgaa tattttaatt ttcaaaaaat agaattgtta gagaaatatt
     2281 tccatcttag ttctagtcct gactatgaga aagcatgtga agtaattcat gctgctgtag
     2341 atgatttttt aaatggaaat acagatgaag tgattttagt tcataatggt tataaaaata
     2401 tgattaccca agaacttaaa attaatcatc ttattccagt tgaaccaaag agtattgaac
     2461 agactcataa ttctctttta gagcttgaac cagaaggaac tgagctttta gaagatttaa
     2521 tgaaaacata tttcgagtat aatatgtatt atgcattaat cgattctttg gcggcagagc
     2581 atagtgcaag aatgcaagct atggataatg caactaataa cgcaaaggca agagtgaaac
     2641 aactaaattt agcttataat aaagcaagac aagaatccat tactactgag cttatagaaa
     2701 ttatcagtgg tgttgaatca atgaaatagt aaattttaag gagaagataa ataatgcaag
     2761 gatttatttc acaggtatta ggtccggttg ttgatgtaga ttttaacgac tatttacctc
     2821 aaattaatga agcaattgtt gtaaattttg aaagcgaagg aaaaaaacat aaacttgttt
     2881 tagaagtagc agctcattta ggagataata gagttagaac tattgctatg gatatgacag
     2941 atggtttggt aaggggctta aaagctgagg ctttaggtgc tcctattagt gttcctgttg
     3001 gtgagaaagt tttaggaaga attttcaatg ttactggaga tttgatcgat gaaggtgaag
     3061 aaatttcttt tgataaaaaa tgggcaattc atagagatcc gccagctttt gaagatcaaa
     3121 gcacaaaaag tgagattttt gaaacaggga ttaaagttgt ggatttactt gctccttatg
     3181 caaaaggtgg taaagtaggt ctttttggtg gtgcaggtgt tggtaaaact gttattatta
     3241 tggagcttat tcacaatgtt gcatttaagc atagtggcta ttctgtattt gcaggtgtgg
     3301 gtgagagaac tcgtgaagga aatgaccttt ataatgaaat gaaagaaagc aatgttttag
     3361 acaaagttgc tctatgttat ggacaaatga atgaaccacc aggggcaaga aatcgtattg
     3421 ctttaacagg tttaacaatg gctgagtatt ttagagatga aatgggtctt gatgtgctta
     3481 tgtttattga taatatcttt agattttcac aatcaggttc tgaaatgtca gcacttttag
     3541 gaagaattcc atcagctgtg ggttatcaac caaccttagc aagtgaaatg ggtaaattcc
     3601 aagaaagaat tacttcaact aaaaaaggct caatcacttc agttcaagct gtttacgttc
     3661 cagctgatga cttaaccgac ccagctccag caactgtttt tgctcactta gatgctacaa
     3721 cggttttaaa tagagctatt gctgaaaagg gtatttatcc tgcagttgac ccacttgact
     3781 caacttcaag aatgcttgac ccaaatatca ttggagaaga acattataaa gttgctcgtg
     3841 gtgttcaatc agtgcttcaa aaatacaaag atttacaaga tatcatcgcc attttaggta
     3901 tggatgagct tagcgaagag gataaacttg tagttgaaag agcaagaaag attgaaaaat
     3961 tcttatcaca accatttttc gttgcagaag ttttcacagg tagcccagga aaatatataa
     4021 gccttgaaga tacaatagca ggatttaagg gaattttaga aggtaaatat gatcatttac
     4081 cagaaaatgc tttctatatg gttggaaata tagatgaagc tattgcaaaa gcggataaat
     4141 taaaaggtta atttatgaac gatttgatta atttcgagat agttacgcct ttgggtgtaa
     4201 tctatcaagg agaagtaaaa tctgttactt taccaggtag cgagggagaa tttggcgtac
     4261 ttaaaggaca cgctactttg gtttcttctt taaaatctgg agtaattgat attgaaaaag
     4321 ctgatttaaa tcatgaatta attgctattg atgctggaca tgcaaaggta gatgaagata
     4381 agatttgcgt gttagcaaag ggtgcggttt gggtttgtgg aagtgatgaa agtgagattg
     4441 aaaaaaatct tgctcaagca aaagatttga ttaaatctat gagttctgat aatgcagctt
     4501 tagcagcaac tttttcaaaa cttgataatg caaggatgca ttaatgaatt ttgaagctat
     4561 atttcatttt ttcaatagtt caagtattat tacttatata gttttattat ggctttcttt
     4621 atattttatt ttagcattta gtattttgtt tgctagattg acttatttgg ctacatggag
     4681 aaataaagaa aaagaaagtt tagaaacttt gctcttgggt gagaaggatt taagtcgtac
     4741 tgattcgatt ttaagaaaat gcaatgatac aacttcaaat catttagaaa tctataaaaa
     4801 tttagcaagt cgccgcgctt ctgctggact tacttggctt agtattattg cttcaacttc
     4861 accttttata ggtctttttg ggacagttat ttctatactt gaaacttttg gtgggcttgg
     4921 aactcaaaat tctttaagta tcatagctcc taaaatcagt gaggctttag ttgctacagg
     4981 ttgtggtatt ttagtagcaa ttcctgctta tacatttcat ctcatcatta aaagaaaagc
     5041 tttcgaactt ttaagcatta ttgatagcga gattaaagtt ataagttcga gtaaataagg
     5101 ttaaaaatgc catttgatga tgaaaaacct gagcttaata tcacaccttt agtagatatt
     5161 atgcttgtat tgcttgcgat tttaatggta acagctccaa gcattactta tgaagaaaaa
     5221 attaatcttc cacaaggtag tcaaaaaaat actagcgctc caactgttaa gagtttaatt
     5281 attagtatta atgcaaaaaa agaaattttt ttaaatcaag aaaaatacga ttttataagt
     5341 tttgctgaca atcttgctca aagaaaagca caatttaata ccgaagatcc ggtttttata
     5401 cgcgctgata aaagcttaaa atatgacgat gttatttcag tcttaagaag tgtaaaaaat
     5461 ttaggattta ataaagttgc tttacagact gaataatcat gaaaaattat ggtttgagta
     5521 atttaaattc gtttttactt gctttagcaa tatatattag tatagtaatt cttgtttttt
     5581 ttagacttgt aagcgaggtt gaacctgcta tacaatatac tgatataaaa gatagttttg
     5641 tagatattga acttgctgaa ccatcaaaac aagttattac tcagagcaac actcctaaag
     5701 aaatacaaaa accaacagag caaattgata tagaaaagct ttttgctcag actacaaata
     5761 aaacagttaa aaccgaagat attgaccaaa aggcaagtaa ttttaatgag ctttttggaa
     5821 atatcaaaga aatacaagaa gaaaagacta caaaaattca atcaagtgct aaatcaggag
     5881 cttctagtgc cccaaaacct caagcttccg aacttgtaaa acaacttaat gatagtttac
     5941 ttcaagaaga aagttcaacg caaggcgaaa gcacaaaggc gcaaaagatt ggaatttatg
     6001 atgaattttt agggaaagtt gtgcgtatta tcactcaaag atggactcag tattatccaa
     6061 atagtgaaaa aatttctgtt aaggtaaaaa tttttattga tgaaaatgga aaatttggct
     6121 atacttcagt tgaaaaaagt gggaatcctt tatatgatgc taaagtggct gaatttttag
     6181 aaagtcaaaa aggtaaattt attacttatc ctccgcaaaa taaaaatata agcattacca
     6241 tgaatttaag agatgaagca aaagttaaaa atgattagga gaaaaaaatg aaaaaaattg
     6301 tagcaatttt tttagtcttt ttaggaagtc tttgggcaga agatccagtg attgatgttg
     6361 ttaattctgg tgtagtttta ccaaagatta ttgttaaaga taattcaaat ttaagtgatg
     6421 agaatttaaa gaaaagcttt tataatatca ttgtgaacga tttgaaagta agttcaaatt
     6481 ttgaagttgt tgctaatgca actgagacaa gtaattatac ttttgaatac gctttaaata
     6541 aaaatggtaa cactttgagt ttaaatgtaa aaataaaagc tggcggttct gataagtcag
     6601 agcaaactta tactttaaat ggtttagagc aatatccatt tttggcacat aaaagcgtca
     6661 aagcttctgt aaatgcgtta ggacttgcac ctgttgattg gatggatcat aaaattttga
     6721 tcgcgagaaa ttctagctct aaaaaaagtc aaattattat ggctgattat actttaactt
     6781 atcaaaaagt tattgttgat ggtgggctta atttatttcc aaaatgggga aataaagaac
     6841 aaactctatt ttattataca gcttatgatc atgataagcc aactttatac cgttatgatt
     6901 taaataccaa taaagctagt aaaattttat caagtggcgg tatggttgta gcaagtgatg
     6961 tgagcgtaga tggaagtaaa ctacttgtta ccatggctcc aaaagatcag cctgatgttt
     7021 atttatatga cttaaatacc aaaaatctaa cacaattaac taattattct ggtattgatg
     7081 ttaatggaaa ttttattggc tcagatgata gtaaagtggt atttgtaagc gatcgtttgg
     7141 gatatcctaa tatttttatg caagatttaa atagtaatag tgctgaacaa gttgtttttc
     7201 atggtagaaa caattcggct gtttcgactt ataaagattt tttggtttat tcaagtcgtg
     7261 aaccaaatca agcaagtgtt tttaatattt atttgatgtc aattaatagt gattatattc
     7321 gtcaacttac agcaaatgga aaaaatttat ttccaagatt ttctagtgat ggtggaagta
     7381 tagtatttat caaatattta ggtgcgcaaa gtgctttagg tgttattcgt gtaaatgcaa
     7441 ataagacttt ttattttcct cttagggttg gaaaaattca atcaattgat tggtaaaaat
     7501 ttcaatttta ggttaaaatt aattaaaaat tagatataat agtaagaatt tattaacttt
     7561 gaaaggtcat aaatgaaaaa aattcttttt acttcaattg cagctcttgc agttgttatt
     7621 agtggttgta gcacaaaaag cactagcgta agcggtgata gtagtgttga ttcaaatcgt
     7681 ggttcaggtg gaagtgatgg ttgggatatt gattcaaaaa tttctcaact taatgatact
     7741 ttaaataaag tatattttga ttttgataaa ttcaacattc gtcctgatat gcaaaatgtt
     7801 gtaagcacga atgctaatat ctttaacact gaagtaagcg gtgtaagtat tactgttgaa
     7861 ggaaactgcg atgagtgggg aactgatgaa tataaccaag ctctaggttt aaaaagagca
     7921 aaagctgtaa aagaagcttt aatcgctaaa ggtgtaaatg ctgatagaat tgctgttaaa
     7981 agctatggag aaacaaatcc tgtgtgcact gaaaaaacta aagcttgcga tgcgcaaaac
     8041 agacgtgctg aatttaaatt atcaagataa ttaatgaaaa aaatattcac agtagctctt
     8101 cttggagcta ctttacttta tgcagaaagc tcagcttttg gtgcaggaga tataacaagc
     8161 aattcttctt atggtttaac ttcaaatgaa aaattattta aagaaaagtt agataattta
     8221 aataatgaaa atatacaaac aaatgctaga attaatgaaa ttaacgaaag aatcgagggt
     8281 ttacaaagta ctttagaagg tataaattct caatatgcta aatcaaattc tagattaagt
     8341 caagttgaag agaataatca aaatattgaa aataatttta ctagtgaaat tcaaaaatta
     8401 aaagcttatg ttgaagaaag tagaaaaatt caagaagcta ataataagca agtaaaaaaa
     8461 gttttagccg aacttagttc tttagtagat gctattaatg caaattatgt ttctaaaaac
     8521 gaattaaatg atgcaaattt aagcgttaaa actattacac ctagtgttgt tgtttcaact
     8581 acagattcaa atagtaccat tgaaaacaat aatactcaaa atacccaaga tgataaagca
     8641 aaacaaattg atgaatcttg gaaaaagaaa aaaaataatg aaattttaga attagcgata
     8701 aaagatgttg ataaaaatgc ttttgaagat tccaaagcaa aattaaattt tctcataaca
     8761 aagcagtata aacctgcaag agcaaatttt tggttagggg agatcgagta taaacaaaaa
     8821 aattataaca atgctattgt ttattataaa aaaagttctt ctttgagtac aaaaggggat
     8881 tatttcccaa aacttttata tcatactgcc atttcattgg ataaaacagg tgatacaaaa
     8941 acagcaaatg gtttttataa agctttaaaa actaattatc caaattcacc cgaagcaaaa
     9001 gcttcaccta atagaaaata aattaaggag ataaaatggc tatagaaaaa aatagtgtag
     9061 tttcaatgtt ttatgagtta aaagacgcaa atacaaatga agttttagaa tcaaatttat
     9121 actctcaacc tatttctttt attttaggca aaggtcagat tttagaaagc ttagaagaag
     9181 aagtgatgaa gcttgattgc cctagtaatg ctgatgtggt aattaaaaaa gaaaaaggtt
     9241 taggcgaata cgatgaaaat gccgttcaaa ctttaccaaa agagcaattt gcaggtattg
     9301 atttaaaggt aggtatggag ctttttggcg aaggtgaaaa tggcgaaact gttcgtgtaa
     9361 ctgtaaaaga aattagtgaa aatgatgtga caattgatta taatcaccct tatgcgggtc
     9421 gtgatttact tttttcttta aatatcgtag atgctagagc tgcaagtgaa gatgaaattc
     9481 ttacaggtat tattgcagga agtcatagtt gtggttgtgg aagcggacat ggacacgatc
     9541 atcatcacgg acacggtggc ggcggttgct gtggtggcgg cggttgcggt tgtcattaat
     9601 gaagactgcg ttcatatttc caggtcaagg ctcacaaagt cttggcatgg gaaaagattt
     9661 ttatgaaaac tctataaaag ccaaagaact ccttcaaaac gcaagtgatt tttgtaagat
     9721 tgattttaaa catttgcttt ttgaagaaaa cgaaaaactc aatcaaagtg aatttactca
     9781 acccgccatc gttttaaatt ccttaatggc ttatagtgtt ttacttgaaa aaaaacctga
     9841 tttaagttcg aaatttgctt tagggcattc tttgggagaa ttttcagcct tagctgtcaa
     9901 tggtgctttt gattttttag aggctctttc tttggtcaat aaaagagggc tttttatgca
     9961 agaagattgt gtaaaagttg aagcgggtat gatggttgtt ttagggcttg atgatgaaaa
    10021 ggttgaagag ctttgtcaaa aagcacaaaa agaaaacaag caaattttcg ctgcaaatta
    10081 taactgcgat ggacaaatcg ttgtagcagg tttaaaacct gatttagcaa gttatgaaag
    10141 tgtatttaaa gaagcaggag ctaaaagagc tatgctttta aatatgagcg tggcaagtca
    10201 ttgtcctctt ttggaaaatg cttcagctaa gctttgtgtg gagcttgaaa aggtgttaaa
    10261 accaaatttt aaagccgtaa tttctaatgt aaatgccaaa atttatacaa gcaaagaaga
    10321 agcccttgaa cttttaaaag cacaacttat ctctcctgtg ctttataaac aaagcattaa
    10381 ggcatgtgaa aatgaagtag attatttcat agaatttggt gcaagcgtgc ttaagggttt
    10441 gaataaaaaa atcacttcaa aagaaactta tgctttaaca aatatgaatg atattgatga
    10501 atttttaaag gttatatgat gaaaatagca attttaggag ccatgagtga agaaatcact
    10561 cctttgcttg aaacacttaa agattataca aaaatagaac acgctaataa tacttattat
    10621 tttgcaaagt ataaaaatca tgaacttgtt ttagcgtatt ctaaaatcgg aaaggtaaat
    10681 tctactctta gtgctagtgt gatgatagaa aaatttggcg cacaagcttt gctttttaca
    10741 ggagttgcgg gtgcttttaa tcctgaactt gaaattggcg atttgcttta cgcaacaaaa
    10801 ttagctcaat acgatcttga tattaccgct tttggacatc ctttaggttt tgttccaggt
    10861 aatgaaattt ttatcaaaac cgatgagaaa ttaaacaatc ttgctttaga agttgctaag
    10921 gaattaaata tcaaactgcg tgcaggtatt attgcaacgg gtgatgagtt tatttgtgat
    10981 gaagcaaaaa aagcaaaaat tagagaaatt ttcaatgcgg atgcttgtga aatggaaggc
    11041 gcaagcgtgg ctttggtttg tgatgcttta aaggtgcctt gttttatctt aagagctatg
    11101 agtgataaag caggggaaaa ggctgaattt gattttgatg agtttgtgat caattcagct
    11161 aaaatttcag ccaattttgt gcttaaaatg tgcgagaaat tatgataaat cttagcaaaa
    11221 aactcatacg ccaagttgca caagctaatg ctaaatttgg acttattaaa gatggagata
    11281 gggttctttt agggcttagc ggcgggaaag attctttggc tttagcccat cttttaaatc
    11341 gtatgcaagc tcatgctcct tttaaatttg aacttgaagc ggtaactttg agttatggca
    11401 tgggcgagga ttattctcat cttcatgcac attgtgaaga acacggcatt aaacatagcg
    11461 tgcttgattc aaatatttat gaagtttcag gtgataccat aagagaaaat tcaagttttt
    11521 gtagttattt ttcgagaatg cgtcgtggag ctttatatac ttacgctctt gaaaaaggtt
    11581 ttaacaagct tgctatagcc catcatttag atgatgcagc agaaagcttt tttatgaatt
    11641 ttattcataa tggagcttta agaaccttag cgcctattta tcaaagcaaa cgcggtgtaa
    11701 ttgtgatacg ccctttgatt tttgtgcgag aaagacagct tagggataat gctacgcaaa
    11761 atgaacttag cgtgatagga aatgaatttt gtcctggtat gaaactcagc gaaaaaaatg
    11821 taaaattccc ccacgctaga gaagaagcta aacagctttt agcaaattta gaaaaagatc
    11881 atcctaagct ttttacaagt ttaaaaaccg cttttgccaa tttacacacg gagagttttt
    11941 ggcttcaaaa ggcataaaag catgaaaaaa gcttttgttt tagtggatta tcaaaatgat
    12001 tttattgatg gaagtttagg ttttgataag gctttaaaaa tcaaagaaaa tattcttaaa
    12061 gccttaaatc aaatcgattt taataacacg catttgcttt taacctatga tacgcatgat
    12121 gagcattatc tacaaagtaa agaaggttta aatttacctg taaaacattg tattaaagag
    12181 agtttgggtt ggcaaatgcc aaaggaattt gaaccttttt tacaaaaagc tcataaaatt
    12241 ttttataaaa atacttttgg tagcttagaa ctagctaatt tcatacaaaa aagcgattat
    12301 gaagaacttc attttgcagg gcttgtttct catatttgtg tgttttgtaa tatcatttta
    12361 gcttttggtg ctaagcctaa tgcaaggata attttacacc aaaatttaag tgcaagtttt
    12421 gatgaaaatt tagaaaaatc cgcttttgat atacttaggg cttatggtat tgaaattgtt
    12481 taatgcaagg ctttatactt catactcaaa aagttaaaga tgaggatttg atcgtttata
    12541 ttttaagtcc taaaatgctt attaaggctt atcgttttta tggacttaga cattctagta
    12601 ttttaagtgg ctataaaatc gactttgctt tagaagaaaa tcctagtttt ttaccaagac
    12661 ttaaagatgt attgcatttg ggatttttat ggattatgca aagggataaa atgcttattt
    12721 ggcaagaatt tatccgtctt ttatatagac acttaaaaga tgtggaagag cttgatagtt
    12781 tttattttga tttacttgat gagtgtgtga aaaggtttga aaaacaaaat ccaaagcgtg
    12841 ttattgttga tgcttattta aaaattttgg aatttgaagg aagattgcat aaagattttt
    12901 tttgtttcgc ctgtgatgag aaaattcaaa atcccattac attactaagg gcttttttac
    12961 cttcgcattc tcaatgtgct ttaggatttg agtttgaaga gaaaaaacta aaacaatttt
    13021 atagcagtaa aaattgtgcg atttttgatg atgaagaaat agaaaattta tatcatttga
    13081 ttaaggaagg tttatgatat taagtgatga aaaatgtgat tttttagaat ctatagcaag
    13141 ttttttaagt cctaaagatg tggagcttgt ctttgtggat agtaaagaaa tgcaagaaat
    13201 taacttagag caaagaaaac aagataaaac cactgatgtg ctttcttttc cgcttgaaaa
    13261 tatcgatgag agtttgcctt tgggttctgt tgtgatcaat gtggatttgg caaaagagaa
    13321 ggctaaagag ttagggcata gctatgaaga agaaataagc ttgcttttta tccacgctat
    13381 gcttcattta ctaggttttg atcatgaaaa tgataatgga gaaatgagag aaaaagagaa
    13441 agaacttata gagtgtttta atttgcctaa aagtttgatt gtaaggactt tggaaattaa
    13501 gtaagatttt tttcaagagc tagaagactt gcgctttata ttttaaatat atgagtaaaa
    13561 atattaaaaa aaatcatttt tgccgattta tcttaataaa tttcatttac aaggaaggca
    13621 aaaatgatta atggtataaa ttcttattca aactacaatt acacaaatac ttttagtaat
    13681 actacttcaa atacaaaatc atctaatgcc atagcaaata ataaccttgt aagtgataaa
    13741 tcacaagcgg tagataaaat tttaggctat ggcgtagata aagagggctt ttttacaagt
    13801 gattttaacg aagcagcagg tttgccaaaa gattataaga tttatgcaga tggtttaaat
    13861 aattttgtaa ataactttat taaaagacaa cctttttact ctcaaataga cattgctaaa
    13921 acaataggaa atgcttataa ctctttttct tcttttgtta aagataaggg attaggagaa
    13981 agctttcaag aacaggattt aaaaaatcta tcccaaaaag atggggtaaa ttattggcaa
    14041 gaattacaaa gcgataatgc tttcatttgg aagcttactg atgaaaatat agcagatttg
    14101 ggttctaata aatatcaaat acatgataac aaaatatcta aaggtggtgc tttaattgcg
    14161 ttttttataa ataatcttag cacaattaaa ggacaaacaa ccttactggg taaattagct
    14221 ggacttaata gcgatacgga caacaatgaa ataaaagaat ttttgtcctt tatgaataaa
    14281 aatcctttaa aatattccta cgagcaagat ggctggggca atcctatggg agatagttta
    14341 tcaatatgga attatataaa tagagctaaa aatttaggag atgataaact aataaaaact
    14401 attaagaatt taggagatga atacaataag cttattaatt ctaatatgag cctagaagaa
    14461 tttaaaacca aatatcttga ttttaaacaa agacacgatg agtttgtaaa atcactagaa
    14521 gaagcagaaa aggcaaaagg tgtagattat agcaatcctt taaaaaatac aaataacaaa
    14581 gaaacttcag aagaaggcaa agaaaagcct tttaaaccta tacaagcaga aagtaaaaac
    14641 aaagaaactt acaaagatga taatacaaga agcgaacttg taaaaaaatt attaaaagat
    14701 aaatttagca ctagtaaaga attagaactt ctttttggta tgaaatttag tgatgatgat
    14761 gcaggagaat ttaataaaat cctttcttta aattctacac caaaaagtat agatattaag
    14821 gcttaaggtt ttttaaatta taaaaatcaa tcaagttaaa ctaaaaaatt cttctatttt
    14881 ttttcgcatt ttttctgtat tgtcgatacg attgacttca tctctaaagg ctgaagcgtc
    14941 tttatagcct ttagaatact cgtgtaaatg cttgcgaaat atacttacgc cttgatcttt
    15001 gtagtgtttt atcatttcat caaaatgagt gagtatgatt tcttttttga gtttttcatc
    15061 tacgctttta ccgcttttga tttcataaaa tatccaagga tttcccacgc ttgcacgccc
    15121 tatcatgagt ccatcgcatt ttgtgatttc ataaacttct ttagcgtttt gtgcgttaat
    15181 atcaccattt gcaatcacag gaattttcac gctctcttta gcactggcaa tggattcata
    15241 atcggctttt ccgctataaa gctgttttct tgtgcgtccg tggatgctta caaaatccac
    15301 ccccaagctt tcacaaattt tagccatttt ttcaggatat ttttcattaa atcctagtcg
    15361 aaatttcaca cttgtaaggc tttttttatt gttttcttta attactccta caagattttt
    15421 aaaaagctct aaattttcta gcaaagcact gccagcgcat tgtttaacaa ctttatttac
    15481 agggcaaccg caattaaaat caatcccatc tacaaaatcc atttcattta gcatttgcac
    15541 tgcttttttt agcacttctt tatctccacc tgcaatttgg actatataag gattttctaa
    15601 ttcagctctt tctagcatat gtagagtttt agaactttca taaactaagg cattagaact
    15661 tatcatttcg cttatggtaa tatcagcacc aaattttttt actacattac gaaaaggcag
    15721 atctgaaaaa cctgccatag gagctaaaaa taaaggtttt ttgctaaaat ctatcattgt
    15781 atgagttggt ttagattgat tttgatattt ttttcacgca aggctaaaaa ggccttaaaa
    15841 tcattaaatt tcttatcatc attgtgaatt tgctctctta actcatctaa aagtccaaat
    15901 tcagctaaaa gatataaatg tgctcttaaa gcttcgcttt tttcattttt aattttgtta
    15961 aaaattccta aaatagcatc aggatttaaa agtttagtac ttagttttgc tgcgttaaga
    16021 tagtcttttt cgcttagtat attgtgtgaa agtaaaactt cgtattctgc tgcactaagt
    16081 tctaaatttc cttctttaaa acgcttgata agtgtgagaa cttcagaagg ctttttaggg
    16141 atttttacat ttttaatttg ttcataacta gctttttcta taagagtatt aaaagcaatt
    16201 tcttcaaatt catctttgat ttcattaagg tttttaagtt tgctataggc ataatttgca
    16261 tcgtttttga gatgattttt ttcattttgc aaatataaaa cattgttatt ttcgagttta
    16321 aatttactaa ggttaaaaaa ttcgttttta tttaaaccat caataagatc taaaatttca
    16381 ttgattttat ttgagtgtgg aattttttca tgtgttttta gggttttaaa aagttgtgcc
    16441 acagctctaa attcttttgt ttgaaaagtg gttttaagat ctttttcaag gagcaaatct
    16501 tgagtataag cttcaaattt agctgcatct ttaaaaaaat gcttaaattt taaataacgc
    16561 aaaaatccat aaaatgctat gtgcaaaacg gctaaaatca tataaacaaa taaaggaata
    16621 acaagccata tcataatagg tagttcaaag gtataagtac tgatatttag agtatagctt
    16681 cctagttcta gatgccaagc aaaggcaaaa ataagtgcta tataaataaa acttgcaagt
    16741 aaaaagagtt taattttcat gtttttttcc ttgttctgca atttgacggc aagtgataca
    16801 atatcttgcg tgaggtttga cttttagtct ttgagagtcg atttcatcat cgcaagattc
    16861 gcaaattcca taagtgccgt ttttgatttt atctaaagaa ttttcgattt ctataagttc
    16921 ttctttgaga ttggtgctga tagtaaagtc aatttgagag cctgtttcta tgatagaaaa
    16981 atctacacta tcgcttggga cgctattgtg aagagcttcg atttcatttg aattgctttg
    17041 caaattttct aagatggttt tttttctttc ttctaaaata tttttgaaat tttgtatttc
    17101 attttttttc attttaaaac tttctatttg tgataagggt gattgttgtt gatgcaaaat
    17161 gcacgataaa tttgttctaa aagtaaggtt ttaacaaatt gatgtgctaa agtaagtttg
    17221 cttaatgata gtctaaaatc caaactttga ttaaattctt ctcttaaacc ataagcacca
    17281 cctataaaaa aacttaattc atttttatct tggatgagtt ttgcaaattc tatacttgta
    17341 agttctttcc ctttttcatc aagagcgata caatagcctt ttttataagg cataaaagct
    17401 tcttcatagc ttttttttgc ttctatggca tttaaatttt gagctaaggc tattttttta
    17461 ttaaaaacat ttatttcttt taaagtggcg tatttagaaa taagtttaga gtatttctca
    17521 ctccaagttt taaattcatc acttttttga atacaaaaga tattaacttg caaattattt
    17581 tccactgaaa aattttagca catcgctaag atattgtttt tgttctcctc tttcaactat
    17641 ggcatctata agtccatgtt ctaacaagaa ctctgctttt tgaaagcctt caggtaaatc
    17701 tgttcctata gtttgtttaa taactcttgc accagcaaaa ccgactaaag cttcaggttc
    17761 agcgatgatt aaatctccaa gccaagcaaa agaagcactt actccgccca tagtaggatc
    17821 agttaaaatg ctaatataag gaagtttttc tttgctaaga agtttaagtg cggcgctagt
    17881 tttgctcatt tgcatcaaag aataagtact ttcttgcatt ctagctccac cgcttgcact
    17941 tacgatgaca agaggggttt tgcttgtgat ggctctttgt acagctctaa cgattttttc
    18001 tccttcaaca gaacctaaag atccgcccat aaaagaaaaa tcaaatacaa caagttgggt
    18061 ttttaaacca ttgatttcac attctccact aataacagaa ctttttctac ctgttttact
    18121 ttcaccttcg ctaaggcgtt ttttatagga tttactatca acaaatttta aaggatctat
    18181 agcctctaaa tttgcatcat actcaataaa actgccttca tcgcttaaaa gtttaatacg
    18241 ttcatcagct gaaattctca tgtgataatt acatttaggg caaacattaa aacaagattc
    18301 tatttcttta taatacatca aagcatgaca actttggcat tttacccagt gatttggagc
    18361 ttctttaacg ctaggttgtt gtcttcttat ttttgaaaaa atatctgcaa aattcatata
    18421 ttcacctaat tattttttaa aaattctaag attatatcaa aaattttctt gtcttggctt
    18481 aggagaagga aattttcatt tttttctata tataaatttt gatgaattgt taaagcagct
    18541 actgtatcaa aaattcgtgt ttttccaaga attaatacaa aactaaaata cgaagcataa
    18601 gcgagactta aggctgttgc gcccaaagag cgaaatttta attgattttt tgttaaaaaa
    18661 tcgagaagtt ctggataaag tgaaattttt tcaactatac ctattttaga aaatagatta
    18721 ggtgttaagg gtgagtattt tggatcggaa agattagatt taaaagattg attgttatta
    18781 aaagcaaaaa tttcttgact gacaagattg caaacaaaag cgctttttgc ctgatctttt
    18841 tctatgagag ctatagaagt tccataaaat ggtattttag aaacaaaatt tgaacttcca
    18901 tccaaaggat caagaatcat ttgttttggg ttatctttcc cgatcaagcc actttcttca
    18961 gaaaaaattt gcccaaaaca actaagatat tttatgaaaa tttgttcaca ttttaagtca
    19021 agctcatagc cttgattttc atcatagcct aatttagagc aaagtttaag atcattttgt
    19081 gggatattgt ttagatactt gcgtatttgc aaatttgcat tcaagcaagc atctaaaaat
    19141 tctttcatta aaagcgtgtt ccaagattaa attcaaaact attagtatca tcaccttttt
    19201 tatcattaag aggtttggca aatacaagct gtaaaggtcc aattggtgta atccattcaa
    19261 tgcctatacc tgtactcatt ctttttattt catctaaatt tttacgccct atcataccat
    19321 aatcaaaaaa cacgctacca cgaagtttga ttctatcaat caaagggaag ctaagttcta
    19381 cggaattggc aaaagctatg gttccaccta cttcatctcc ccattggttt ttaggactta
    19441 ccgttctgct ttcaaaaccg cgtatcgatc taataccacc taaataaatt ctttgattaa
    19501 ttggcaaata gccttcatcc catactttat aaaaactcgc tttatagcga taaataagat
    19561 catatcctat atagtcttgc aaaccttgat aaaagttaaa tttagagctt gatgaaataa
    19621 attcttgatc tccgccaagt ccagcgtatt ctaaactagt tgaagcaatg atacctgatc
    19681 gtggcagata ataatcatct gtattgttaa aggtgattgc tggagttata gagcttttaa
    19741 tacttttgcc aagttcatat cctgttctta aaagagttgg acttaagtga tatatatcgc
    19801 tttgttcaag attataagtt aagcttacat tatagtatct tgcaaattgg cgtccaactg
    19861 ttatatcaaa gccgtaattt ttttctgaat aattatccca ttcatagtca tttgaataaa
    19921 gtgttccacc cagactatat tgactatcaa gaacgcgtgg atttatgaga ctaatccttc
    19981 ctgataaggt atcatcgctt ttatctacgc ttacagagct ttttattcct gaaccaaaga
    20041 tatttgtatc tgataaagaa gcattaagta aaataccatc gcttgatcca tagccaatac
    20101 ctccagaaat agctcctgta gaagcttctt taacatcaac aatcaaatca atatgtgtat
    20161 catcaacttt ttcttcttta atatttacat cgtcaaaata agaagttctt tttaaagcat
    20221 tttttgactc gcttaagtct gttctattgt ataaattacc ttctgttata tataattctc
    20281 ggcgtatgac gcgatctaca gtacgtgaat ttcctgaaat aataacattt cttatataaa
    20341 ctttatcatg agggattact ttaaatacaa cggtggcttc ttgagtttga tcattttttt
    20401 gaatatcagg atagacttct acaaacgcat agcctaaatc agcactttgt gtttctatgg
    20461 ttttaacatc ttttctaatg tcttcgatat tgatagtttt gccagcactt gatcttaaat
    20521 cttttacggt ttgtgcattt tgtttatcat caaataaagg attttctatg cttatacttt
    20581 taattttata aggctttcct tctttgataa aataagtcaa atttgcttga taagtatctg
    20641 tgtaggtttt aagataaggc gaggatactt gaacatctaa atatcctttt ttcatatatt
    20701 catcagcaat tcttgaacta tcgttactaa gttcaaaaac ttttaatttt ccatcattgc
    20761 gtccccacat ccatcccata aattcttttt ctttgttaac aacagcaggt tctatatcag
    20821 aatatgaaaa tttcttggct ccacttaaat gaacattatc aataatgata ttttcgccac
    20881 gatttactat aaattcaagc tctagtccat cggtattttc taaagtcttt tttttgtatt
    20941 ctacaatagt atcaaaataa ctttttgctt cataataagc tttaatgcgt tcaatagctt
    21001 cttttatact tccttcatca agtagtgtgc ctcttttaat ccctaaaata ctttcaactt
    21061 gttttctatc atttgaagct atacctgtga tagtaacctt tgctatagtt ggtttttcgg
    21121 taactataat ttccaaaatt ctattgttgt tttctactgc aatattttcg aaataatttt
    21181 gtttataaag attaagaata gcagtgttga tttttgcagg atttatttcc tcgcctattt
    21241 taagccccgt gatatttata gcgcttgtgt tcgataaatg atttaatccg ataaatttaa
    21301 tatctttaat ggttgctgca ttggctatag caactaaagc acaaatacta ataagatgtt
    21361 ttttcattga ttttttacct aaagctttat taaaagctgt ataatagcaa aaaaaattta
    21421 acaaaaaaac taaggtagaa agtatgaaaa tagcaattat agggcttggg cttatgggtg
    21481 gatctttagg gctttgtttg aaagaaaata agcttatttc ttgtgtttat ggtatggatt
    21541 taagtaaaga aaatgaaaaa gatgccctgc gattaggtct tattcatgag cttatagaat
    21601 ttaaagattt agctttatgt gatatgattt ttgtcgcaac tcctgttaat gctattatag
    21661 aaattttgca aaagttagtt gatttgcctt ctaatgtaac aattatagag cttggaagta
    21721 caaaaagaaa aattatagaa agtttgccta agaatttaat caaacaaact ctttttgctc
    21781 atcctatgac aggaactgaa aattcaggtc caaaagcagc ttttaaagag ctttataaag
    21841 atgcagtttg tgttctttgc gatagtgaaa tagctgatga tttgcatcaa aaaagagcgg
    21901 tagaaatttt ttctcattta gggatgaaaa ttgtttttat ggatagtaaa gcccatgatc
    21961 atcatgctgc tatcatttca catttgcctc atgttataag tttttctttg gcaaattttg
    22021 taatgaaaga agaagataaa agaaatattg ttcatttagc tggaggatct tttaaaggta
    22081 tgagcagaat tgccaaatca tcgccacaaa tgtgggaaag tattttttta caaaataaag
    22141 ataacttatt aagttctatt gatttttttc aacaagaatt agagagatgt aaacaaatga
    22201 tacaattaga caaaaatgat gaattaagag aatggatgaa acaagctaat actctaagag
    22261 aaattttata aatttgctag atatttactg aaaatataat agaatttata ctaaaaacaa
    22321 caaaaacatt gaaaattttt aaggaaggtt atggcaaaaa gaaaaggcaa aacttattta
    22381 tctgttttaa ttttagtttt aatagtaatt ttgatttttt ttatttcaag attaagtatt
    22441 tttgaaaaaa atcctcctca aattttaatg ccagatgttg tatatactga tcttaaaaaa
    22501 cctattttag tgcatgttaa agatgatgaa agttctatca aaaatgtaca aattatattg
    22561 cataaagacg acaatactag tgcaatggtt atagcagatg aaaagatttc taatttaaaa
    22621 gatattacct tacaagttgc tttgccaaaa tttggttaca aagaaaatgt aaaatctttt
    22681 gttttggagg tgatagctaa agattctagt ttttggaatt tttttagtgg caatgaagca
    22741 agaaaacaaa ttgcggtatt agtagataat acggctccaa aaatcaatat cataagcaat
    22801 tcttaccaaa tcgagcaagg cggtgccggg gctgttgttt ttaaggccga tgatgctaat
    22861 ttagataagg tgtatataga aacaaataaa ggtagaatct ttaaagccac accttatgta
    22921 aaagaagggt attatgcggc tttgattgct tgggatgcaa gagatgagga atttcgcgca
    22981 tttgttatcg ctacggataa agtgggaaat atttcaaaag aacgtataag gtattatttt
    23041 gttaatcgta aatatcgtgt ttcaaatatc aatctaacgg ataaattttt agatggaaag
    23101 attgagaatt tagcaaatca atacgctcca aaagataata atctcaatcg ttatgaaaaa
    23161 tttaagtttg tcaatgaaac tttaagaaat agcaatgaag aacttatcca tgaaatcact
    23221 tcaaaagtac ctgaggaaaa aattgataat tttgatttga atttattttt acctcttaaa
    23281 aatggtatga aagtagcgga ttttgctgat cataggtatt attcttataa tgggcaattt
    23341 gtgagtgatt cttatcatat ggggcttgat ctagcaagcg tagcacaagc tcctatcata
    23401 agcaataacg caggcaaggt tgtttttgct gctgaaaatg gaatttatgg tttaaattta
    23461 attgtttatc atggttttgg agtatatagt ctttatgggc actgttcttc taaaaatgtt
    23521 gatttagatg aaatgattaa taaacaaagc attataggca aaacaggaac aagtggttta
    23581 gccttaggtg atcatttgca ttttggagtt ttagttcaag gagttgaaac gcgtcctgaa
    23641 caatggcaag ataaaaaatg gatagaaaat aatatttaca atgttttaaa tgatggtaaa
    23701 aagataattt taggaaaaaa ttaatgaaac aattaacttt agcaaaaact gtcaaaggcg
    23761 taggtatagg acttcataag ggtgaaccca tagaaattac tttagagcct ttagaagcaa
    23821 atagtggtat agtatttttt agaagcgatc ttaatgcaag ctataaggca agtcctgaaa
    23881 atgtgatcaa tactcaaatg gcaactgttt taggagacga tcgtggattt atttctacaa
    23941 tagagcattt aatgagtgcg attaatgctt atggaatcga taatgtacgc atagttttaa
    24001 atgcaaatga agctcctgtt atggatggat caagtattag tttttgtatg atgcttgatg
    24061 aagcaggggt aaaagaactt gatgcaccta aaaaaattat ggtaattaaa aagcctatag
    24121 aagtaagaga tggtaataaa tttgtgcgtt taactcctac taaagaaccc cgtattaatt
    24181 acacaattaa atttgacaat gctgttatag gtgaacaaag ttacaatttt gaattcagca
    24241 aaaaaaatta tatagaaaac atagcaaggg ctagaacttt tggtttttta aaagatgttc
    24301 aagctcttag gagtatgaat ttagcactag gtggaagttt agaaaatact atagtggtag
    24361 atgaaaatcg tattttaaat cctgagggtt tgcgtttcaa agatgagttt gtaagacata
    24421 aaattttaga tgcaattgga gatttaacct tacttggata tcgtgttttt ggggattata
    24481 tttcatatgc tgggagtcat catttaaatc atttacttac taaagaagtt ttaaaagata
    24541 aagatgctta tgaaattgta agccttgaaa aaacaaccca aaaagcttat gaaaaggtat
    24601 ttgcataaaa acctctcttt tgcttaatgc tttatctaag cctttaatga tcggaattta
    24661 tcaagatgat aaacttataa aaacttataa aagtgaagaa aaagcaagcg aatttttacc
    24721 aaaaatttta gatgaattgc ttaaagaata tgattttaca agtttaatct atgctaatgg
    24781 tccaggttct tatatgggga ttaaaatttc ttatgtaagt ttgagtactt taagtatagt
    24841 aaaaaatatt cctttatttg cggtgagtgc ttttgaatta aatggctata aacccataag
    24901 tgcaaataaa aatttttgtt ttgtatataa ggaaggtgaa atttgtttag agcaaaatat
    24961 cccagcagag ttttttttac caaaaaattt acaagagctt aaactaaata atgataatct
    25021 tcccttttat tttttagatg caatttagga tgaaatttga aaattttagt tcccgctacg
    25081 agtgcgaatt tagggccagg ttttgattgt ttaggactta gtttaaagct ttttaatgaa
    25141 actcaaatcc aaaaatcagg tgtttttagc attagtattg gaggtgaggg cagtgataat
    25201 atttttctta aaaaaaacaa catatttgta aatatttttt atgaaattta tgaaaaacta
    25261 agtggaaaaa aagataattt tcgttttatt tttcaaaata acattcctct ttcaagagga
    25321 ttaggaagct cttcagctgt gattgttgga gctattgcca gtgcttatta tatgagtgga
    25381 tttaaggtag aaaaagaacg tattttagat gaagctttaa tttatgaaaa ccatccagat
    25441 aatatcgctc cagctactct tggtggtttt gtgtgttctt tggttgaaaa aaataaagtt
    25501 tatagtatca aaaaagagat tgataaagat ttagctgctg tggttgtgat cccaaatttg
    25561 gcaatgagca cggaacaatc acgccaagct ttggccaaaa atttgagttt taatgatgcg
    25621 gttttcaacc tttctcatgc ttcattttta accgcttgtt ttttggagaa aaaatatgaa
    25681 tttttaaaat ttgcaagtca agataagctc catgaaatca atcgtatgaa aaacttaccc
    25741 gagctttttg aagtgcaaaa atttgcttta gaaaataaag ctttaatgag cacactttca
    25801 ggttcaggat cgagcttttt ttctttagct ttcaaagatg atgctttagc tttagtaaag
    25861 aaaatgcaaa caaaatttaa agattttcgt gtgcaatatt tagaatttga tgataatggc
    25921 tttgaaattt gctaaaaaat ataaaaaaaa gatataattt tgaaaaaaca tataccaatt
    25981 agaatgtgca tagtgtgtaa aaaccgcttt gagcaaaata tgttatttag atttaaagtt
    26041 gttttaggag atattgtgcc taaagcagaa catggaagaa gcgggtattt atgtcaaaat
    26101 tgtattgaaa aagaagataa aatcttgcaa aaagcatttt ctaaaatatg taaaaattta
    26161 aatactaaaa ttactcagca aggacttaag gagatatttt taaatggcaa agattagaat
    26221 tcatgaaatc gcaaaagaat taggttatga tagtaaggaa attattgaaa aggcaaatga
    26281 attagggctt ggaattaaaa cagcatcaaa tgctgtagaa cctgagattg cggcagctat
    26341 ttatgagtat atacaaacaa gagaaattcc agaagctttt aagaaaaata tcaaaactcc
    26401 tacggcaaaa aagcctaaaa aagaaaatat aaaagaacaa gaaaagctaa atgaatctga
    26461 aaaaaaagaa cctaaaaaag aagaaaagct taaacaagaa gttaaaaaag aagaattaaa
    26521 agttgaaaaa gaaaatgcaa aagaagaaaa acaagaaatt attgatgctc ataagccaca
    26581 aagccttgct agtgcaactt tagctaaaag acgcggactt gttattgtta aaaagaaaaa
    26641 agacgaagaa gaaattcaag ttaaaaaaga agaagtaaaa aattcaaatg atatatctat
    26701 caataatgaa gagcgcttaa gtttaaaaac catgttttca aatgctgatg agagtttaaa
    26761 gaaaaagaaa aaagaaaaaa aatcttttgt cgcgagtaaa aaagaaagta ccgaaaaaat
    26821 gaatttttta gatgaacatg attttggtga tatttcttta gatgatgaag atgaggtagt
    26881 gttgcctgat tttagtgtaa aagaacaaga aaaaccacaa aatatcaata aaaaacaacc
    26941 taattttata agacaagctg ttggaaattc tgcgggtttt ggacttgaag gtggaattca
    27001 aagaagaagt cgtaaaaaac cacctaaaaa gattgaaaaa aaggaagtag aagaagtaag
    27061 tagcgttgct atttctaaag aaattcgtgt gtatgaattc gctgataaga taggaaaaag
    27121 cactagtgaa gtgatttcaa aacttttcat gcttggaatg atgacgacaa aaaatgattt
    27181 cttagatgaa gatgcgattg aaattttggc tgctgaattt ggtatagaga tcaatatcat
    27241 taacgaggct gatgagtttg attatgtaaa agactatgaa gaagagattg atgaaaaaga
    27301 tttagtgact agagcacctg tgattactat catggggcat gttgatcatg gtaaaacttc
    27361 tttgttagat tatattagaa aatcacgcgt tgcaagtggt gaagcagggg gtattactca
    27421 gcatgtgggt gcttatatgg tagaaaaaaa tgggcgtaaa attactttta ttgatactcc
    27481 aggtcacgaa gcttttactg ctatgcgtgc aaggggtgca agtatcactg atattgtaat
    27541 catcgttgta gctgcagatg atggggtaaa accacaaacc aaagaagcga taaatcatgc
    27601 taaggcagca ggtgtgccta ttattattgc tattaacaaa atggataaag aagcagcaaa
    27661 tcctgatatg gtaaaaactc aactcgcaga aatggaaatc atgccagtag aatggggcgg
    27721 atcttatgaa tttgtagggg tttcggctaa aacaggaatg gggattgaag atttgcttga
    27781 gatcgtgctt ttacaagctg atattttaga acttaaagcc aatccaaaaa gttttgctaa
    27841 agcaagcatt atagagagtt ctgtgcaaaa agggcgtggt gcggtagcta ctattatcgt
    27901 gcaaaatgga acacttactg taggaagtac cgtggttgca ggtgaggctt atgggaaagt
    27961 gcgtgcgatg agtgatgatc aaggtaaagc tttaaaggaa atcaaaccag gcgaatgtgg
    28021 ggttatcgta ggacttagtg aagtagcaga tgcaggtgaa attttaatcg cagtaaaaac
    28081 cgataaagaa gcaagagaat acgctaataa acgccacgaa tacaatcgcc aaaaagaact
    28141 tagcaaatct actaaagtta gcattgatga gcttggagct aagatcaaag aaggcaatct
    28201 aaaagccttg cctgttattt taaaagctga tgtgcaagga tctttagaag ccttaaaagc
    28261 aagtttagaa aaacttagaa atgatgaaat caaagtgaat atcattcata gcggagtagg
    28321 tggaatcacg caaagtgata tagagcttgc aagtgcgagt gaaaactcta tcgtactagg
    28381 ttttaacata cgcccaacag gggaagttaa agagcgtgct aaagataaag gcgtagaaat
    28441 taaaacctat aatgtgattt ataatctttt agatgatgta aaagccttgc ttggtggtat
    28501 gatgagtccg attatttctg aagagcaatt aggacaagca gagattagac aagtgatcaa
    28561 tgtgccaaaa atcggacaaa tcgcaggttg tatggtaact gaaggggtga ttaaccgtgg
    28621 agccaaaatt cgccttatcc gtgatggagt tgtggtttat gaaggcaatg taagttcgct
    28681 taaacgcttt aaagatgatg ctaaagaagt ggcaaaaggc tatgaatgtg gcgtaggtat
    28741 agaagggtgc gatgatatga gagtgggtga ttatatagaa agctataaag aagtacagga
    28801 acaagcaagt ctatgaatcc aagtgagatt aaaaaactac gcactgaaag tatcttaaaa
    28861 gagctgatcc ctgaagcttt agcaaattta gatgatggaa atttgaaaaa tttgtgtgta
    28921 gtggatgtag agtgtaaaaa aggcagatac gatgcttttg tgtatcttga taagatgttt
    28981 tttaatgttc atgagcaaga aaaaatttta tcttctttaa aaaaggcaag tagagctttg
    29041 caaaattact gcatgagtga gcagggctgg tataggtgcc cgaattttca ctttaaattt
    29101 gatgataggc ttgagtatca aaaccatatg gatgcacttt ttgaaaaaat aaaaaaggat
    29161 aaaaatgaat cttgaagccc tttgcaaaga agcagaactt agcttttatg atgatgagct
    29221 agtaagtgaa aatggcagaa aaatttatag aatttatgtg caaaaagaag gtggggtaaa
    29281 tcttgatgat tgtgcaaggc ttagtgaaat tttatcgcct atttttgatg tagaaccacc
    29341 tgtaaatggg gagtattttt tagaagtatc ttcaccgggg cttgaaagaa aactgagtag
    29401 gatagaacac tttgctaaaa gtataggtga acttgtgaag atcacaacca atgaaaaaga
    29461 aaaattcgaa gcaaaaatca ttgctgtaga tgatgaaaat atcactttag aaaatttaga
    29521 aaataaagaa aaaactacta taaattttaa tgatataaaa aaagctagaa ccttcataca
    29581 atggtaaaaa tttagatttt tattttatat aattaaaata aaaacaaaaa atcaaaaggc
    29641 atgcaatgct agaaaataaa tgtgattgga aaataagtaa ggcagatcaa aatggtaatg
    29701 tgtattatta ttttccaaaa gatgaagatg aatttaaaga agcagttgta aaaaatggcg
    29761 gtatgagtgt gtatgtttat caagaaggta aatttataga tgaatttcac acaaaaagtc
    29821 aaggtgataa atggacttct tctattctta attatttaaa aactatgagt aaagatggag
    29881 gaatatttta tagatattat aaaaattgca aattttttgc tataccaaaa aatacatttt
    29941 ctaaagatga ttttaaaatt ataaaggaca atataaataa taatataccc ttaaatcaaa
    30001 ttctttatgg acctccaggg acaggaaaaa cttatcatac tatagataaa gctttggaaa
    30061 tttttggcga aaatttagaa agtagagatg agaaaaaagc aaaatttgat gagtatgcaa
    30121 gaaagggaca aatagtattt actacttttc atcaaagcta tggatatgaa gaatttgtag
    30181 aaggtataaa gcctgtgatg aataatgaag caaattctca agaaatacaa tataaaataa
    30241 aagatggaat ttttaaagat ttttgtgata aggctcttgt tgtaaaacaa aattttaatt
    30301 ttaatcaaat taaggatgat tttttagatc attgtagaga aaaaaaatca ataatatata
    30361 aaaataaaga atataaattt gaagaaccaa ataatttaat tactggaaat ttaaaaatcc
    30421 atattaatta tatcagagat atgatagagc agattggttt gtcttatggt aatttatctg
    30481 atattgaaat agaaggatat ataaggttga aaattgatag cggtgataat attataaata
    30541 attataagat tattttagat tatttttatt ataaatatat caatttttct tttgtatttg
    30601 ttatagatga aatcaatcgt ggtaatgtaa gtaagatttt tggtgagctt ataaccttga
    30661 tagagcctag taaaaggata ggtgaaaaag aagagttaaa agtaaaattg ccttatagtg
    30721 gtgaagaatt tggggtgcct aaaaatgttt atatcatagg cactatgaat acagccgata
    30781 gaagcataac ttctcttgat acagctttgc gaagaagatt tgaatttatt gagatgatgc
    30841 ctgatgtgag caaattatct atggattgcg aaggtattaa tttacaagaa ttattaaaag
    30901 ctataaacac tcgtatagaa tatttactag atagagaaaa aaccatagga cacgcatttt
    30961 ttataagtgt tgaaaattta gaaagtttaa aaaaggtttt taaaaataga atcatcccac
    31021 ttttgcaaga gtatttttac aatgactatg ctttgattga tgcggtttta aataaaaatg
    31081 gtatgttgga aattagtgtt gaaaataaag attatttaaa aaatatgaca gaatttatag
    31141 aaagtgataa ggttgtttat aaatttagtg atagtaataa ttggagtaaa gatactttta
    31201 taaaaatata tgaataatga aaacaagtaa cactttttct atcatcgaac atcaagcttt
    31261 ttctaaagaa gatttaaaag aaattttcaa agaaaaggcc gaagggtttt ataaagatct
    31321 agaagacttt gcaaaaaata atgaaaatct tttaggcttt aaaaacaaaa attccttaaa
    31381 agctaaaaat tatgtcggca ttatacagac taaaagcggg gttttggaga ttttgccaaa
    31441 atgcacgaat ttagatagct ataaaaaaga agatagctct tcaaatcacg ataaagaaaa
    31501 actaaaaaga tactatgaat tagacaatat ttctaaaaat aatgattttt atgaaaaaga
    31561 ttttaaattt aatcccaaaa atcttttgat aaatatgcta aaaaccttaa aaaactcccc
    31621 ctttaaaaaa tcgcaaattt catctttgca aagttctaaa attcctttat ttgaagtgtt
    31681 tatcactatg tttttagatg aatttgatag cgtatataaa aaaggcttga tgagatctta
    31741 tctaagttgc gaagaaaata gggctttttt aaagggaaaa ttactattta acgagcatat
    31801 caagcgaaat ttgatacaca aagaaagatt ttttacaagc aatgatgagt ttgttttaga
    31861 tatagcaccc aatcgcttga taaaatcaac gctaaatttt ttaaaatcca aaacaagttt
    31921 gaataaattt agacttataa aagccatgca aatgcttgat gaggtagaat tttctaaaaa
    31981 ttatgaaaaa gattttagtt ataaaatttc aagacatttt gattattatg aaaacttgct
    32041 tttgtggtgt aaaattttct taaaaaatga aagttttatg ccttatcatg gtaaaaatga
    32101 agcttttgct ttgctttttc ctatggagaa aatttttgaa gattatgtag cttatatgct
    32161 aaaaaaagta aatccaactc aagatattaa agtccaaaac aatggaaagt atttaatctc
    32221 aaaaaatgat gaaaaatgtt ttatgttaaa gcctgattta tatatagaaa ataaaatgat
    32281 cctagatacc aaatggaaaa ttccaaatga tagtgaagat gagaaaaaac agggtataga
    32341 acaaagcgat ttgtatcaaa tgtttgctta tgcttgcaaa tttaaaattt atgatattaa
    32401 acttgtgtat cctttatgtg aaaaaactca agatttacaa agaaaaatcg cagaaaaatt
    32461 ttttgttttt aaggcaagcg aacatttgta ttttaaagaa caagggcaaa aagatataaa
    32521 agtgcaagtg ttattcgcac ctttaccttt ttaaaaattt gcctatcaaa tgcactaaaa
    32581 aaccaaaaca agctacagct atgatgcaag caccgcttga gagattaaga taatagctaa
    32641 gtataagtcc taaaacacaa aaaatcatac ttaaaaaact tgccaaaatc atgataaagc
    32701 caagtctttt agtaaaattt tcagcaataa agcttgggat actaagtaaa gccataacca
    32761 aaataagccc tacaaggcgt atagaaataa ctatacaaaa agccataagg gcgattaaaa
    32821 gataatgaaa aaaacttgta ttgataccac gaacttttgc aaattccgca tcaaagctta
    32881 atgcttcaaa ttgtctataa aataaaaaga tcaaaagtac caccacgcta tcaaccaaag
    32941 ccataagcca taaatcttgt gttcctacag ccaaaatgct cccaaaaaga taagccatta
    33001 aatctgtgtt ataactaggg cttaaatcga ttaaaataat cccaacagcc attccaaaag
    33061 cccagattac agcgataata ctatcacttc tgtgttcata gtgtttagct aaaaaagcta
    33121 ctaaaaaagc caaaaataaa gtaaatattc ccgtgcttaa taaaataggc aaagagaaat
    33181 aaaaagctat gcctatacca ccaaaagccc catgtgttat acctccagcc atagaaaaaa
    33241 gacgatttat catcaccaaa gtacctatga tcccacaagc tatactgact aaaatcgctc
    33301 ctagtaaagc gttttgaaaa aaggtgaaat ttaaaatttc aagcattatt ttcctttgaa
    33361 aattttaaac aaaaattttc ttttttaaat tctgtttttt tcaaatttct tcttgtaaat
    33421 tcttgttcgc atagtttttt actatcgcaa ttttcttcat cgcaaaaaca agtatttaaa
    33481 ctcatttcta catcacaaaa atgagagtgg ttttcgtata agtgttttaa aaatgaactt
    33541 ttttcttttt ctttagtatt ggtatgcaag aaaagttctt tgtttaaatg tgcaatttta
    33601 tcgctataag ctaatacaag gttgatatcg tgacaaatga gtaaaattcc catacctttt
    33661 tggtgcaagg agcttagaag ttcaaaaatt tgtatagcag acttgttatc aacgcttgcg
    33721 gtaggttcat ctaaaataag catcttacat tcactagcta aggctcttgc gataaaaaca
    33781 cgttgtcttt gtcctccgct tagagaatca atggttttgt tccaaaattt ttccattcct
    33841 acgcttttta aagcttgcat agctttttct ttatcttttt tcccataaaa accaaaaatt
    33901 tttttactta caagtcccat aagaacgatt tcaagtactc ttggacaaaa attaggattg
    33961 gctagagtgt gttgaggaac atagcctatt tcttttcttt gaagagcttt gaaatggatt
    34021 tcatttttgg attttaaaag ccctaagata agttttacaa gtgttgattt tcctgcacca
    34081 tttggaccta tgatagagag aaagtcttta ttgtcatagc taagattgat gttttttaag
    34141 atgatttcat tatcataagt gtagtttaga ttagaaattt caaaaaaaag catgaaaaag
    34201 cctgattata aattatgaga aaaggcatca gcagttttta aaagctcatt ttcccaatca
    34261 taagataaat gatctatttt gtaaattttt gcatcacatt ctttagcaag tgtttttgct
    34321 gcattttcag ggaaaccatt ttgaacaaaa atgactttta aatttttatc tttcattaga
    34381 gtgataagtt tttgcaaatc tttgcttttt ggttccttgc ctaaaatttc tacaggaatt
    34441 tgcgtaagat tatagcgttt tgcaaaatat gtccaagaag gatgataaac tacaaaatct
    34501 ctatttttta atttttctaa ttttgaggca atttgtaaat ttaa
//
LOCUS       DAZAND010000006        29096 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.006, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000006 DAZAND010000000
VERSION     DAZAND010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29096
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.006"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1794
                     /gene="lepA"
                     /locus_tag="ACHDOB_000219"
     CDS             <1..1794
                     /gene="lepA"
                     /locus_tag="ACHDOB_000219"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HFN3325178.1"
                     /translation="SVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMDT
                     MDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLVV
                     DASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAIC
                     VSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGNIA
                     KNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTIT
                     LVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSLA
                     LGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELVKIQNPSELP
                     PVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPLN
                     EIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQS
                     KGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRKL
                     LEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            1871..2515
                     /gene="mapA"
                     /locus_tag="ACHDOB_000220"
     CDS             1871..2515
                     /gene="mapA"
                     /locus_tag="ACHDOB_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein MapA"
                     /protein_id="HFN3325179.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPD
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDATGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            2512..3087
                     /locus_tag="ACHDOB_000221"
     CDS             2512..3087
                     /locus_tag="ACHDOB_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HFN3325180.1"
                     /translation="MRCINCGAFALLCFCDLCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNHIKYSGKSLEFRQKHKRNYKLLKTIQEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            3128..5719
                     /gene="gyrA"
                     /locus_tag="ACHDOB_000222"
     CDS             3128..5719
                     /gene="gyrA"
                     /locus_tag="ACHDOB_000222"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009330 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) complex [Evidence
                     IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HFN3325181.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDLQ"
     gene            5783..6298
                     /gene="flgP"
                     /locus_tag="ACHDOB_000223"
     CDS             5783..6298
                     /gene="flgP"
                     /locus_tag="ACHDOB_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HFN3325182.1"
                     /translation="MKKIYFMLAIAGIFAGCVPSANSATKNSSANSTPPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDENFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            6274..6723
                     /gene="flgQ"
                     /locus_tag="ACHDOB_000224"
     CDS             6274..6723
                     /gene="flgQ"
                     /locus_tag="ACHDOB_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HFN3325183.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDIKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GAKISVKDIVNTDLLRAQSETYIKILPLRFTVEFGEQNAIIYYLKKK"
     gene            6780..8081
                     /gene="flgR"
                     /locus_tag="ACHDOB_000225"
     CDS             6780..8081
                     /gene="flgR"
                     /locus_tag="ACHDOB_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HFN3325184.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDR"
     gene            8081..9112
                     /gene="asd"
                     /locus_tag="ACHDOB_000226"
     CDS             8081..9112
                     /gene="asd"
                     /locus_tag="ACHDOB_000226"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HFN3325185.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVV
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            9121..9627
                     /locus_tag="ACHDOB_000227"
     CDS             9121..9627
                     /locus_tag="ACHDOB_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HFN3325186.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            9679..9870
                     /locus_tag="ACHDOB_000228"
     CDS             9679..9870
                     /locus_tag="ACHDOB_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HFN3325187.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            9879..10313
                     /locus_tag="ACHDOB_000229"
     CDS             9879..10313
                     /locus_tag="ACHDOB_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFN3325188.1"
                     /translation="MIIRWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            10344..11459
                     /gene="livJ"
                     /locus_tag="ACHDOB_000230"
     CDS             10344..11459
                     /gene="livJ"
                     /locus_tag="ACHDOB_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HFN3325189.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDNFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVDNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            11481..12590
                     /gene="livK"
                     /locus_tag="ACHDOB_000231"
     CDS             11481..12590
                     /gene="livK"
                     /locus_tag="ACHDOB_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HFN3325190.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSTLSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            12609..13505
                     /gene="livH"
                     /locus_tag="ACHDOB_000232"
     CDS             12609..13505
                     /gene="livH"
                     /locus_tag="ACHDOB_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HFN3325191.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            13505..14557
                     /gene="livM"
                     /locus_tag="ACHDOB_000233"
     CDS             13505..14557
                     /gene="livM"
                     /locus_tag="ACHDOB_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HFN3325192.1"
                     /translation="MMVRIKVSHLIFLIASIVFIFVSPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSEK"
     gene            14554..15324
                     /gene="livG"
                     /locus_tag="ACHDOB_000234"
     CDS             14554..15324
                     /gene="livG"
                     /locus_tag="ACHDOB_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325193.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFANEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVITAYLGDFDANS"
     gene            15311..16006
                     /gene="livF"
                     /locus_tag="ACHDOB_000235"
     CDS             15311..16006
                     /gene="livF"
                     /locus_tag="ACHDOB_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325194.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETSHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            16025..19270
                     /gene="ccsA"
                     /locus_tag="ACHDOB_000236"
     CDS             16025..19270
                     /gene="ccsA"
                     /locus_tag="ACHDOB_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HFN3325195.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSNPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELAGQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HASVIIFILLLSFGSEKTFAQDLNLTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAIANILEIPS
                     TKYISYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWTRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVV
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLALFARRKRNFVGKL"
     gene            19286..19735
                     /locus_tag="ACHDOB_000237"
     CDS             19286..19735
                     /locus_tag="ACHDOB_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325196.1"
                     /translation="MVIFCAALALLLFLGMIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEATKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(19738..19814)
                     /locus_tag="ACHDOB_000238"
     tRNA            complement(19738..19814)
                     /locus_tag="ACHDOB_000238"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(19778..19780),aa:Arg,seq:gcg)
     gene            complement(19867..20634)
                     /locus_tag="ACHDOB_000239"
     CDS             complement(19867..20634)
                     /locus_tag="ACHDOB_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HFN3325197.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQDEEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQTQYKKHLKILNLSISILSKNTKEHLVR
                     VDTLYTLTSAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSLICCILIVGFIFYHSKKTKEFDLDEGKKAKKQTK"
     gene            complement(20636..21757)
                     /gene="tgt"
                     /locus_tag="ACHDOB_000240"
     CDS             complement(20636..21757)
                     /gene="tgt"
                     /locus_tag="ACHDOB_000240"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HFN3325198.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAITYHKSMQNKGIGIGQNIFGIIQGGTDYKERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEAIDPACSCYTCCNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            21787..23187
                     /locus_tag="ACHDOB_000241"
     CDS             21787..23187
                     /locus_tag="ACHDOB_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HFN3325199.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISTWLQNNDVGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFGRNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            23233..24288
                     /gene="aroB"
                     /locus_tag="ACHDOB_000242"
     CDS             23233..24288
                     /gene="aroB"
                     /locus_tag="ACHDOB_000242"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HFN3325200.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAREIFIAAVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESSFLK
                     TLSSRELAAGMAEFIKMAAMFDDSMLDFIEKIDEKSFLNATCENEIFTQIIARSIELK
                     SRVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGF
                     LDKMQSQKIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLAGPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            24285..25856
                     /locus_tag="ACHDOB_000243"
     CDS             24285..25856
                     /locus_tag="ACHDOB_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HFN3325201.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLSLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVGLKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQNHF
                     EQHHENMHFHARNKD"
     gene            25853..27103
                     /gene="mtaB"
                     /locus_tag="ACHDOB_000244"
     CDS             25853..27103
                     /gene="mtaB"
                     /locus_tag="ACHDOB_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0061712 - tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HFN3325202.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTSLGKLLQKMGQISGIKRIRL
                     GSLEPAQIDESFLEILDETWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEEVWQEALKKFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNILKSIVEKNNYEFRKKNQVPLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIFISQYEAQEKSNFANLKG"
     gene            27107..28723
                     /locus_tag="ACHDOB_000245"
     CDS             27107..28723
                     /locus_tag="ACHDOB_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN3325203.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLAKVPVEVKKDNTLWVFFILLVFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNVNLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNDEEKKIQAAYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLEEPNLNEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEHDDVKNIMQV"
     gene            complement(28731..>29096)
                     /locus_tag="ACHDOB_000246"
     CDS             complement(28731..>29096)
                     /locus_tag="ACHDOB_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HFN3325204.1"
                     /translation="ADIIISADNLPSVSKEFLQHNFKAPIGIVQKDKNSYEVYLSDGT
                     ELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKNEFPNIKAREIERKINHYKIKLDN
                     DVKILIDFNGTILHKEIDD"
BASE COUNT        10191 a         3477 c         5380 g        10048 t
ORIGIN      
        1 tcggtaaaaa atattagaaa tttttctatt atagctcata tagatcatgg aaaatctact
       61 cttgcagata ggattattag cgagtgtggt gctattagcg ataggcagat gagttcgcaa
      121 gttatggata ctatggatat agaaaaagag cgtggtatca ccataaaagc acaatcagtg
      181 cgtttaaatt ataaatttaa taatgaaaat tttgttttaa atcttattga tactcctggc
      241 catgtggatt tttcttatga agtgagtcgt tctttggcaa gttgtgaagg ggctttactt
      301 gtagtagatg cttctcaagg tgttgaagca cagactatag ctaatgttta tatagcactt
      361 gaaaataatc ttgaaatcat tcctgtgatt aataaaatcg atttacctaa tgctgatgtt
      421 gaaaaagtca agcatgaaat cgagcatatt ataggtatag attgcaaaga tgcaatttgc
      481 gtgagtgcaa aaacaggagt gggtataaaa gagcttatag aaacaattat cactaaaatc
      541 cctgcaccaa aaacagatga tgaagctcct actaaggctt taatttatga ttcttggttt
      601 gataattatt tgggtgcttt ggctttggtt aggatttatg aaggaaatat agctaaaaat
      661 gatgaagttt tagtcatgag tacagataaa aaacatatag ttcaagatct tttttatccc
      721 caccctttaa gtccaattaa aactcaatct ttacaatcgg gtgaagtagg cgtggtggtt
      781 ttagggctta aaactgtagg cgatgtacaa gtaggcgata ctattacttt agtaaaaaat
      841 aaagctaaag aagccatagg gggttttgaa aaggctaaag cttttgtgtt cgcaggactt
      901 tatcccatag aaacggataa atttgaagat ttaagagatg ctttggataa gctaaagctt
      961 aacgatagtt ctattactta tgagcctgaa acttctttgg ctttaggctt tggttttagg
     1021 gtagggtttt taggactttt acatatggaa gtgattaaag aaagacttga gagagaattt
     1081 aatcttgatt tgattgctac agctccaact gtgacttatg aaatttatca aaccgatgga
     1141 gagcttgtta aaattcaaaa tcctagcgag cttcctcctg ttaataaaat cgatcatata
     1201 aaagagcctt atgttaaagc cactatcatt actccaagtg aatttttagg gaatttaatc
     1261 actcttttaa atcgcaaaag aggagtacag gttaaaatgg actatatcac acctgagcgc
     1321 gttttgctag aatatgatgt gcctttaaat gagattgtga tggattttta tgataaatta
     1381 aagtccttaa caaaaggcta tgcgagtttt gattatgaac ctatagaatt tagagtaggg
     1441 gatttggtaa aacttgatat taaagtggcg ggtgaaaatg ttgatgcgct aagcattatc
     1501 gtgcctaatg aaaaagcaca aagtaaagga agagaacttg ttagcgctat gaaagaaata
     1561 gttcctagac agctttttga agtagccatt caagcaagta ttggaaataa aatcatcgca
     1621 agggaaaccg ttaaatccat gggtaaaaat gtgacagcaa aatgttatgg tggggatatt
     1681 actagaaaaa gaaagctttt agaaaagcaa aaagaaggta aaaaaagaat gaaagctata
     1741 ggtaaggtaa atttacctca agaggctttt ttgagtgttt taaagataga ttgatgataa
     1801 atttaaaact tggcttgaaa tttgcttgta tttttaatac aattttaaaa taattttcta
     1861 aggagaaaaa atgtttaaaa aatttttgat ttttatagtg cctattttat ttttgagtgc
     1921 ttgcgcaact aaacaagata cttttgctca agttaatcaa atttctaaaa attctcaatg
     1981 cagttcttgt gaaagtcctg atggctttga agcaaagatt aaagggcttt tatacattag
     2041 cgatgttgga attcaatgtt gtgccaataa acgcacttta gacactggta ttgctttaaa
     2101 aaaggtttat ttgcatagat tttatgattt aaaagaaggg caaaaagttt taaatgctaa
     2161 agggaaaaag ttatttgttg atgtgaattt taatgcggta ttttatactt atttaaaaca
     2221 agaacttgaa gctagaggaa tagttgtgct tgacaataac gatcaaaatt caccttatgt
     2281 gagtaagatt gatttagaat ttatatctta tggagcaact caagatgcta caggattaca
     2341 ttcaaaacta gtaggagttt tacaagttag cgatataaac aaaaataaga aatttacaat
     2401 ccgcaccaag caagatgtac aaggtttcga tgatctaaaa gaaacaactt tttatactca
     2461 tttgttaata aaacaaatgg caaataaagc agctagttta atctctgaac tttgaggtgt
     2521 ataaattgcg gagcttttgc tctgctttgc ttttgtgatt tatgtgagct agagctttct
     2581 gaattttcct taaatgtaag aaagcttgat aataatttca aagtctattc tttttataaa
     2641 taccatgaaa tacaacactt gcttcactct aaacattatt tttatggtta tttcgtttat
     2701 aaaatgcttg ctaaattaag ttttgcaaaa tttaaagatt tttttgatcc tagaatgaca
     2761 attaatgtta tagctttaga tgataaggtt gaagatatgc tttattcaca ttctgctatt
     2821 ttagctagat atcttaaaac aaaatttgta aaacctgttt ttaatgtttt aaaagcacaa
     2881 aatcatatta aatattctgg aaaaagttta gaatttcgtc aaaaacataa aagaaattat
     2941 aaactcttaa aaaccattca agaacctgta attttggtag atgatattgt aacgactggt
     3001 tctagccttt tggaagctaa aaaagtttta gaagaaaata aaatttctgt actttttgct
     3061 cttgttttag ctgatgcaaa agtttaatat gctataatca aaactttgaa ctaatagaag
     3121 gatttttatg gagaatattt ttagcaaaga ttctgatatt gaacttgtag atatagaaaa
     3181 ttctataaaa agtagttatt tagactattc tatgagtgtt attataggtc gtgctttgcc
     3241 tgacgcaaga gatggtttaa agcctgttca tagaagaatt ttatatgcta tgcaaaatga
     3301 tgaggcaaaa agtagaacag attttgtcaa atcagcccgt atagtgggtg ctgttatagg
     3361 ccgttatcac ccacatggag atacagcagt ttatgatgct ttggttagaa tggctcaaga
     3421 tttttctatg agatatccaa gtattacagg acaaggcaac tttggatcta tagatggtga
     3481 tagcgccgct gcgatgcgtt atactgaagc aaaaatgagt aaactttctc atgagctttt
     3541 aaaagatata gataaagata cggtcgattt tgttccaaat tatgatggtt cagaaagtga
     3601 acctgatgtt ttaccttcta gggttccaaa tttattatta aatggttcaa gtggtatagc
     3661 tgtaggtatg gcgacaaaca tcccacctca tagtttaaat gagttgatag atggactttt
     3721 atatttgctt gataataaag atgcaagctt ggaagagatt atgcagttta ttaaaggtcc
     3781 agattttcca acaggtggaa taatttatgg taaaaaaggc attatagaag cttatcgcac
     3841 agggcgtggt cgtgtgaaag tgcgagctaa aactcatatt gaaaaaaaga caaataaaga
     3901 tgttattgtt atagatgagc ttccttatca aaccaataaa gctaggctta tagagcagat
     3961 tgcagagctt gttaaagaaa agcaaattga aggaatatct gaagtaagag atgagagtaa
     4021 taaagaagga atccgcgttg ttatagagct taaacgtgag gctatgagtg aaattgtttt
     4081 aaataatcta tttaaatcta ccactatgga aagtactttt ggtgtgatta tgttggcaat
     4141 tcacaataaa gaacctaaaa ttttctcttt gttagaactt ttaaatcttt tcttaaccca
     4201 tagaaaaaca gttattatta gaagaacgat ttttgaactt caaaaggcaa gagcaagagc
     4261 tcatatttta gaaggtctta aaattgcact tgataatata gatgaagtga ttgctttaat
     4321 taaaaacagt tctgataata ataccgcaag agattctttg gtagctaaat ttggtcttag
     4381 tgagcttcaa gccaatgcta ttttagatat gaaactaggt cgtttaacag gacttgaaag
     4441 agaaaaaatc gaaaatgaac ttgcagaatt aatgaaagaa attgcaagac ttgaagaaat
     4501 tttaaaaagt gaaaccttgc ttgaaaattt aattcgcgat gaattaaaag aaattagaag
     4561 taaatttgat gtgccacgta ttactcaaat tgaagatgat tatgatgata ttgatattga
     4621 agatttgatt cctaatgaaa atatggttgt aactattacc catcgtggtt atattaagcg
     4681 tgtgcctagt aaacaatatg aaaagcaaaa acgaggcgga aaaggaaaat tagccgttac
     4741 gacttatgat gatgatttta tagaaagttt ctttacggca aatacacatg atacgcttat
     4801 gtttgtaaca gatcgtggac agctttattg gcttaaagtt tataaaattc ctgaaggctc
     4861 aagaacggct aaaggaaaag cagtggtaaa tcttattaat ttacaagctg aagaaaaaat
     4921 catggctatt attccaacca cggattttga tgagagtaaa tctttatgtt tctttactaa
     4981 aaatggtatt gtaaagcgta caaatttgag tgaatatcaa aatatcagaa gtgtaggagt
     5041 tagagcgatc aacttggatg aaaatgatga gttggtaact gctattattg ttcaaagaga
     5101 tgaagatgaa atttttgcca gtggtggtga agaaaattta gaaaatcaag aaattgaaaa
     5161 tttagatgat gaaaatcttg aaaatgaaga aagtgtaagc acacaaggta aaatgctctt
     5221 tgcagtaacc aaaaaaggta tgtgtatcaa attcccactt gctaaagtac gtgaaatcgg
     5281 tcgtgtaagt cgtggggtga cggctattaa gtttaaagag aaaaatgacg aattagtagg
     5341 tgcagttgtt atagaaaatg atgagcaaga aattttaagc ataagtgcaa aaggtatagg
     5401 aaaacgcacc aatgctggag aatatagatt gcaaagcaga ggtggtaagg gtgtaatttg
     5461 tatgaaactt acagaaaaaa ccaaagatct tattagcgta gttatagtag atgaaactat
     5521 ggatttgatg gctcttacaa gttcaggcaa gatgatacgt gttgatatgc aaagcattag
     5581 aaaagcaggg cgtaatacaa gtggcgtcat tgtagttaat gtggaaaatg acgaggtggt
     5641 tagcatcgct aagtgtccta aagaggaaaa tgacgaggat gagttaagcg atgaaaactt
     5701 tggtttagat ttgcaataag tttaaagttg gaacgcttat tgctttttat tttactaatt
     5761 acaatatttt gaaggtgtaa aaatgaaaaa aatttatttt atgctagcaa tagcaggaat
     5821 tttcgctggt tgtgtaccaa gtgcaaacag tgcaactaaa aattcaagtg caaatagcac
     5881 tcctccatct caagatgtta tcgtgcaaaa agtcgataaa gatgatgtgc gtgatattat
     5941 cagagaagaa aagatgttgg ctccagatgc tagcgaaacg gaacttagtt ttacagcagt
     6001 tggtgaagga attgctccaa tgaatacagt atctactgct caagccctag ctttagcaaa
     6061 aagagcagcg attacagatg cttacagaca acttgcaagt aagctttatg gtgtgaaagt
     6121 aaatggtaaa gatactgtaa aagatgcaat gcttagaagt tcaactatta ctgcgcaagt
     6181 aaatggtttg ataaaaaatg caagtattat tgatgagaat tttaatcaag ggctttatag
     6241 agtaaactta gaacttaaaa tcgatgcaga caagtggaaa gaattgtttg cttattaatc
     6301 tttcttagct ttaagctttt tgcccaagat gaatttattt tttgggcaga gctttctagt
     6361 aaaaatttca ttctctttca tcaaaatcaa aatttatcct tagcaatgac gcaaagtgaa
     6421 aatgttgaag aacaatgggt atgtgaaatt tcttatagtg atcaagatat aaaagtttta
     6481 cctcgaactt ctttaggatt aattgatgat aatatgccaa aaacaattaa atttaatttt
     6541 ttaaattctc ataaagatga gttaagcgat tgctttatag gagctaaaat cagtgttaag
     6601 gatattgtta atactgactt attacgtgct caaagtgaaa cttatattaa aattttaccc
     6661 ttgcgtttta ccgtggaatt tggcgaacaa aatgcgataa tttattatct taaaaaaaag
     6721 taaattcaaa attaagcgca aattggatac tatagcagaa attttttaaa aggcttagga
     6781 tgaatttagt catagtagaa gatgatatta atatgcgcaa atccttagaa attgcattag
     6841 cagagtatga agaatttaat attaaatctt ataaatctgc tactgaagct ttaaaaaaaa
     6901 tagatgagaa tacagatttg attattacag atattaatat gccaggaatt gatggcatag
     6961 aatttgttaa agcctgtgaa aataaatatg attttattat tatgacagga aatgctactt
     7021 taagtcgtgc tatagaagcg gttcgtttgg gagtaaaaga ttttttaacc aagccttttg
     7081 atgttgatac tttagtcgag gctattaagc gtgctaaaat cataagagaa aaaacagccg
     7141 ataaaaaaag caaaaaaaat gaaaaaaaag aagaaaataa agattttttt tcaacttctc
     7201 ctaatttaga aaaaacatta aatttaagtc aaaaagcggc taaaactgat gcctctgtaa
     7261 tgttttttgg agaaagtgga gtaggaaaag aggtattttc tcgttatatt cacacccatt
     7321 ctaaacgctc taataagcct tttgttgcta ttaatatggc agctattcct gcaaatttga
     7381 ttgaaagtga gctttttggt tttgaaaaag gtgcttttac cgatgctaat gcaactaaaa
     7441 tagggctttt tgaaatggct aatgagggta ctttgttttt agatgaaatt ggcgaaatgc
     7501 cttatgaaat tcaagccaaa cttttaagag ctttgcaaga aaaagaaatt acgcgacttg
     7561 gaagtacgaa aagcatcaaa atagatgtaa gaattatcag tgcaactaat gcaaatttag
     7621 atgaaaaaat aaaaaatggc gaatttcgtt cagatttata ttatcgttta aacactgttc
     7681 ctattaatat cccgccttta agagagcgca aagaagaaat tttaggtata gctcaaaagg
     7741 ttttagaaga tacttgtaaa gaatatgatt ttaaggaaaa acagctcagc caagaagcta
     7801 aaaatgcttt acttgaatat gattttcctg gtaatattag agaattaata tccgttgtac
     7861 aaagagcttg tattttaagt gaaaatgatg aaatttcaag tgaagatttg ttcttagaag
     7921 ctagaagtat aaaaaaagat gtaaagaatt tagagaaaga attgatttgt gaagttcttt
     7981 taagtgtaga ttatgacaag gatcaagctt ctcaaatttt aggtatggat ataaaaattt
     8041 taaatgaaaa aattaaaaaa tatcaaataa aggataggta atgtcaaaaa aacaaaaaat
     8101 agccattgtg ggtgctactg gtgcggttgg ggaagagctt ttaaatgttt tagatgaact
     8161 tgattttcca gtggaaagta ttttaccttt agcaagtgca aaaagtgtag gtagtgaagt
     8221 agaatttaaa ggcaaagctt ataaagtcaa agaacttact gaaaatgtat ttaaagaaaa
     8281 tcctattgat attgcttttt ttagcgcagg tggaagtgtg agtgaaaaat atgctaaatt
     8341 tgcagtagaa tcgggtgcag ttgtaattga taatacaagt cattttagaa tggaaaaaga
     8401 tgttcctttg gtggttcctg aatgcaatcc tgaggatatt aaagattgga aaaaaacagg
     8461 gattattgca aatccaaatt gttctactat acaaatggta caagttttaa aacctttaaa
     8521 tgatgcattt aatttaaagc gtgttgatgt aagtacctat caggctgcaa gtggagcagg
     8581 aaaagaagga atgcaagaat tggttgaagc catgcaaagt ttttttgctt ttaaacttga
     8641 tgaatttgaa cctcaaactt ttccttatac tttagcactt aatcttattc cacaaattga
     8701 tgtttttatg gataatgatt acactaaaga agaacttaaa atggtcaatg aaactcaaaa
     8761 aattttacat aaaaatttag aagtttcagc aacttgtgta agagtgcctg ttttaagaag
     8821 tcatagcgaa gccattacta tgcattttga aaaagaaata gatgtaaaaa aagctaaaga
     8881 aattttagaa aaagcaccaa gtgttgttgt catagatgat cctaaaaata aaaaataccc
     8941 tatgccttta atgactagcg atactaatga aacttatgta ggaagaattc gtgctgatgt
     9001 gtatgataaa aaaatactcc atctttggtg tgtggcagat caaattcgtg taggtgctgc
     9061 aacaaatgct gtgcgtattg cgcaaaaatg gttagaatta aaaaataaat aaggaaaaaa
     9121 atgttagaga aaatatttga atctttactt gttagaagtc gtattgttac aattttaccc
     9181 gtaatttttg gtttaattgg agcttttgta ttgtttttta ttgcaagtta tgatgtttta
     9241 aaagttatat tttatactta taattatttt tttgatgcag gttctaatgt ggatttgcat
     9301 gaggatgtgg tggctttaat tataggagct gttgatcttt atcttatggc tttagttttg
     9361 tttatttttt cttttggagt ttatgagctt tttatcagcg aaatagaaga atttaaacaa
     9421 acaaaacaaa gcaaggtttt agaggtgcat agcttagatc aattaaaaga caagcttgca
     9481 aaagttatca ttatggtctt agtggtaaat ttctttcaaa gggttttgca gatgaaattt
     9541 gctactcctg tggatatggc ttttcttgct ggatcgattt tagctctttg tgtaggactt
     9601 tattttttac ataaaggtgg tcattaacaa ggattatctt tttttgatat aatcgttttt
     9661 tgtgtttaaa gaataaaaat gaaaaaaata tttttaattg gtatgatttt aaatcatttt
     9721 gtttttgcag ctcctttaga tgaagtcttt aaagatatag aagtttcagg gactgttcgt
     9781 tatcgctatg atattaaaaa agaaaaaaaa tacaacaaaa aaacacatag atatcaaaat
     9841 aaaacacaaa cggaaattac aataaaataa ggaaaatcat gattatacga tggttgttta
     9901 ttagttcaat atttgttgtt gcgctttttg gtattaattt gaaatcattt tttacttata
     9961 cctttgatgc aaataagcaa tatgatatgg aaaaagcgaa ggctttgtat tttcaaaata
    10021 aatgcaatac ttgccatgga gataatgctg aaaagagtgt tataggatct agaattttaa
    10081 aagatatgtc tcctgaggat attaaaggag ctttgatagg ttatactctt gatagtagta
    10141 gttctacaac agcttctcaa atggcttttt atgctagaaa tttaagccac gaggatatag
    10201 ataatattat tgcttatatt aaaggtggaa attttgcgct tgatttgcaa gtaaaagatc
    10261 ttcttgaaga agaacctgcg caaaaaacaa aacataatat atttctaaaa taaaatgtaa
    10321 aaactataat taaaaggaat gctatgaaaa aactaacttt aactttaagt gttttaacta
    10381 tggtaaattg cttatatgct aaggatatta atataggagt agttttacct ttaactggaa
    10441 ctgtggcagc ttatgggcaa gatgttttta acggaattga actggctaat aagctacagc
    10501 caaaactttc aaatggagat gttattaaac ttatcacaat agatacaaaa ggagataagc
    10561 ttgaaacttc aaacggagtt aatcgtttaa tagcaacaga taaagtcctt gggattattg
    10621 gagaagctac aactccaaat accattcaag ctatttctat agcagaagag aaaaaaattc
    10681 ctctaatagc tccagtggca tctggagata aattgctaga taaaaagaaa tatgcaagta
    10741 gagtttgttt taaagacaat tttcaaggag ataaatttgc cacttatgta tctaaggatt
    10801 taggacttaa aaatgctgtt atcatcatag atcaaagcaa tgtttattct ttaggtttgg
    10861 caagagcttt tgaaaattct tttaagaata atggtgggaa aattataaaa aaacttgtta
    10921 ttaattcagg agataaagat tttagagctg tggtttcgca acttaagagt ttaaatcctg
    10981 attttgttta tatgcctatt tatcatcctg aagctgcttt aattgcgaga caagcaagac
    11041 aaattggttt tgataaactt ttagcagcag gagatggtgt taataatcaa acttttatag
    11101 atcttggcgg aagtgctgtc aatggagtaa ttttcactga tagttttgat tataacaatc
    11161 catctacaca attaggaaaa gattttgttg cagcttatga gaaagttaaa ggaacaaaag
    11221 aacttccagc attttcggct atgggggctg atgcgtattt tgtaatgttg aatgctatga
    11281 atgcttgcgt tgataatctt agcagcgaat gtattaatag taaaattcat caaactaaag
    11341 attttcaagc tgttggtggt gtgattagca tagatgaaag cggtaatgcc attcgttctg
    11401 ttgtgattaa agaaattcaa aatcaaaaac aaaattataa aacaattata aatccataat
    11461 tactaaaata aaggtagaga atgaaaaaaa gtttaatttt agcaagtatt ctaagtttaa
    11521 gtttaagtgc tgcggaagtc aaaataggag ttgttttacc acttagcgga gctactgcag
    11581 catatggaca aagtgcacta gaagggatta aacttgcaaa ttcaatgcaa tcaactttaa
    11641 gtaatggaga taaggtttct cttgctatta ttgatactaa aggtgataaa ttagaatctt
    11701 cgagtggagc aaatcgttta gtttctcaag ataaagttat aggtcttata ggggaaatgg
    11761 ttactgctaa tacattgcaa gttatgcgcg tagcagaaga taataaaatt ccattgatcg
    11821 ctcctgctgc aactggtgat agattgcttg ataaaaaaat atattcttct cgagtatgtt
    11881 ttatggacag ttttcaaggt tcatctttag caaaatatgt tttttcaaaa cttaattaca
    11941 aaagtgctgt tattgtagta gatcaaagca ctgactattc cttaggttta gcaaaagctt
    12001 ttgaaaaaca gtacaagtct aatggcggtc aaattcttag aattttaaga gttaattcag
    12061 gtgataaaga ttttagagct attgtagctc aagttaaaag tttaaatcca gaatttattt
    12121 ttttaccgct ttattatagt gaagcttctt tatttgcaag acaatcaaaa ctcgcaggtt
    12181 taaatattcc tatgggttct gcagatggag ttgctgatca aacttttatt agtttagctg
    12241 gagatgcaag cgagggttat attttcacag atagttttga tgctaataat ccaactacaa
    12301 aattaagcaa agaatttatc agtgtttatg aaaaagctaa aggaacaaaa gaagttccaa
    12361 atttttcagc tatgggggct gatgcgtatt ttgtaatgtt aaatgctatg aatgcttgcg
    12421 ttgaaaatct tactagtaag tgtgtcaatg aaaaaattca ccaaactaaa aattatcaag
    12481 gtgtttctgg tgttatcagt attgatcaaa caggaaatgc aactcgttct gtagtggtta
    12541 aagaaattaa aaatcaaaag caaaattata aagatattat caatccttaa aggaaaaata
    12601 gaaagattat ggattctact ttatttttac aacaacttgt taatggactt agtttgggca
    12661 gtatgtatgc ccttattgct gttggctata ctatggttta tggcgtgtta agacttatta
    12721 attttgctca cggcgatatt atgatggttg gtgcttatgc agctcttttt tgcatgacta
    12781 atctaaatgt tccttttcta ggagctttgt ctttggcaat gatttttgct gcctgtgttg
    12841 gaatagctac agatagaatc gcttataaac ctttaagaca ggctcctaga atttcattgt
    12901 tgattacagc aattggtatt agttttttct tgcaaaatct ttttaatatg ctttttactt
    12961 caacacctag aacttttaca ccgccaagtt attttgagga aagtgttaat tttggcggag
    13021 tgataacaac ttatggttct ttaatggttc ctgctcttac atttgttatt ttaatagcag
    13081 tgttatggat tttgtataaa agcaagtatg gtatagctat tcgtgctttg gcatttgata
    13141 tacaaacagt aaatttaatg ggtatagatg caaatcgtat tattgctata gtttttgccc
    13201 taggttcagc tttggcagca gttgggggtg ttttttgggc tgcaaattat tactctgttg
    13261 aacctactat gggaacttta ataggtttga aagcttttgc tgctgcagtt ttaggaggta
    13321 taggttctgt agtaggtgca gttttgggtg gacttattat aggatttact gaagttgttg
    13381 ttgtggcttt ttttccagat ttatcaggct ttaaagatgc atttgctttt atttttttgg
    13441 tgtttatatt gttatttaga cctacgggaa ttttaggtat aaattttgaa aagagtaggt
    13501 tttgatgatg gttagaatta aggtttcaca tttaatcttt ttaattgctt caattgtttt
    13561 tattttcgtt tctccttata tttttgggga ctatggatta aacattgtta atcaaattgc
    13621 tatttttatt attttggctg tgagttacaa ccttattaat ggtgtaactg gacaattttc
    13681 actagaaccc aatggatttg ttgcaattgg agcttatgcg gctgctttag ttcttttaag
    13741 tgctgatgcg aaaaatgatc agtttttttt agatggtcct agttctttta ttttagccat
    13801 ccattcaaat tcctttattc tagctttaat tgtagctgga atttgttcat ctttacttgc
    13861 cctgattttg gcttttgctg tatttcgcgt gagaggggat tatttggcta ttgtaacttt
    13921 aggctttgga ataattatta aaatagctgc tattaatttt ccttctatta ctaatggctc
    13981 aagaggactg gtagatattc cacaattttc cacgatttat tggacaggtg gtattgctat
    14041 tgtagcggtt attttaattt taaatatagt ttattctaaa tatggtcgtg caatgaaggc
    14101 tataagagat gatgaagatg ctgcaagtgc tatgggaata aatacttttt ggataaaaac
    14161 tttagctttt agcacttcag catttttaga aggtgtaggt gggggacttt tggcttgtct
    14221 gttgactacc gtatctccaa ctcaatttga ttttttactt acttttcagc ttttgattat
    14281 tattgtttta ggcggacttg gttctactac aggtgctatt ataggtgcga tattagttat
    14341 tggtggaagt gagtggctta gatttttaga tgagttaaat ataaaaatag attctttaaa
    14401 tcttgatatc caatcaacgc cagggcttag aatggttgtt ttttctattg ttctgatttt
    14461 agtaatgctt tttgcaagaa aaggcataat gggttattat gagttgagtg atgtgattag
    14521 agggattaaa aagcgtttta aaaggagtga aaaatgattt tggaattaaa acaaatttca
    14581 aaaagttttg gtagtgttaa agctattaat gaaacttctt ttaaaatcaa tgagggtgaa
    14641 atttttgctt taattggacc taatggggct ggcaaaacaa ctctttttaa tattataaca
    14701 ggtaactata aacctagttc aggttcggtt gaatttctag gagaaagaat tgaccactta
    14761 aaacctcata agattgtgca tttaggaata gctagaacat ttcaaaatat taggcttttt
    14821 tcaagcatga atgtgcttga aaatgttctt attggtttta ataaacaaat gaaatataat
    14881 atttttgaag cctttttgca tttagggcgt tttggaaaaa tagaacaagt atttaaagag
    14941 aaggcttatg caatattaga agaacttggt attgcagaat ttgccaatga aaaggctact
    15001 agcttaagtt atggacaaca aagaaaagtt gagattgcaa gagcaatggc tactcaacca
    15061 agattattat tgcttgatga gccagccgct gggatgaata gctctgagag cgatgaactt
    15121 gctgagctca tttttaaatt acgaaaagat tataaaatta gcgttttgct tatagagcat
    15181 gatatgaaat ttgtaaataa attgtgcgat cgcgtattgg tacttgatta tggaaaaaca
    15241 atttttgaag gtaaactttg cgatgctgta aatcataaag aagtaattac tgcgtattta
    15301 ggggattttg atgctaatag ttaaagattt gcatgtttat tatggattaa ttgaagctgt
    15361 taaagggatt gattttaaag tggaaacaag ccatattgtt tctcttatag gttcaaatgg
    15421 agcaggtaaa acttcaactt taaatgcgct tttaaactca gttaaaagaa ctggtgaggt
    15481 taatttctta ggttatgata ctaaaaggca tttaactcat actttagttc aaaaaggtat
    15541 agctttagtt cctgaaggaa ggcgtgtttt tattaattta agcgtagagg aaaatttaaa
    15601 aataggtgct tttaataatg ctgaaaatta tgagcattta agagagcaaa tgtataaact
    15661 ttttccaaga cttgcaagta aaaagcatgc tttagctgga acattgagtg gaggggaagc
    15721 gcaaatgctt gcgatttcaa gggctttaat gagcgaacca aaacttttga tgttggatga
    15781 gccttctttg ggacttgctc caaagattgt gggtgaagtt tttgatatta ttgtgcgttt
    15841 aaaagaagag ggtataacta ttcttttggt agagcaaaat gcttattctg cattaaaaat
    15901 aagtgattat gcttatgttt tggaaaatgg tcgcattgta atggaaaacg aggctaaaaa
    15961 tttaataggt gatgatgaga ttagaaagaa atatttaggg ctttaaaatt ttaaaggaaa
    16021 aagaatgaaa aatataataa aaagcatagg ggatttaaga gtttcggttg tattgttttt
    16081 gctttttgcg cttttttgtg ctttggcaac ttttattgaa agtgcctatg gaactcctac
    16141 ggcttgggca atggtttatg atactttttg gtttgaatat atacaacttt tgcttggtat
    16201 taatttacta tgcgggatgt ttcgttataa aatgtttggg cttaaaaaat tgcctttaat
    16261 gatttttcat atttcttttt tatttatttt agtgggttct gcaatgacaa gatatgctgg
    16321 ttttgaaggt attttaccta ttagagagca tactcaaaat tcacttatag aaagttctaa
    16381 gacttctttg cgcatttctg ctataaaaga tggagaacgc tatagtgcgg ttaatgatcg
    16441 ttatatagga aatttgcctt ttgctaattc ttttaaacta aaacttaatt taggtgatga
    16501 tcaagctgta ttaaaatata aagatttaat cttaaatgct cattatactt ataaagaaaa
    16561 taataattct aatcctttat tggttttaat gctttctcaa aaaggatctc aaggtgttga
    16621 tgttaaattt gaaaaaggtg aagttaagaa tatagaaggg gttaactttg cttttatgaa
    16681 tgataatgtt aaagcacctt ttgtaaaaat tgacgaaaat ttaactttaa gttcaagtga
    16741 aaacttacat tttctaagta tgctagatgg acaaaattta gaccttaaaa ttggagaaaa
    16801 ggcaaatgct aaggaaagaa ggctttatga aattaatgat attagttttg tagttaaagc
    16861 tgcttctttg catgcgcaag aagctttaga aggttccaat agacctcaag atgaaagttt
    16921 ttggttatgg tttaaatctg cttggttaga agtgggtaga actatgttga tttctacttt
    16981 tggcgagcct caaaattgga aaaattcttt attattgcat tttaaagatt ttgccttaag
    17041 caatgagaat aaaaacttag aattaactgg ctctaatgct ttaaaattag aattaagcta
    17101 taaaaatgaa agtaaagaat tttatatttt tgaatataat aaacctatta tgatagaact
    17161 tgcgggtcaa aaattcttta tttcttgggc gctttcttat gaacaattgc cttttgatat
    17221 ttatttgaga gattttgtat tagatcgtta tccaggttct atgtctccag cttcttatgc
    17281 aagtgaaatt accgtaaaaa ataataatga aaattttgat tatagaattt ttatgaataa
    17341 tgttttagat tatgatggct atagatttta tcaaagttct tatgatcaag atgaaaaagg
    17401 gactgtttta tctgtaaata aagatccagg taaaatacca acttatatag gttatttttt
    17461 gctttgtctt ggaatgttta tgaatttttt aaatccacat tctagattta gaactttggc
    17521 aagattaatt aataaagaca ctttaaaaca tgcaagtgtg attattttta ttttattgct
    17581 atcttttggt tctgaaaaga cttttgctca agatttaaat ttgaccttac ctgtggtaaa
    17641 tactaatcat gctaaagctc ttgctacttt aatagttcaa aaatcagcag atggaagaat
    17701 ggtgcctttt gatacgctat caagagaaat tttagaaaaa attcatcaaa gtgatagcta
    17761 taagggtcaa aattctaacg ctgttatgct ttccatgctc gttgatgtag ataaatggca
    17821 aatggaacct tttattttaa tgccacaaaa tcaagcagtt cgtgatgcta ttgcaaatat
    17881 tttagaaatt cctagcacta aatatatttc ttataaagat ttctttgatg agaataaccg
    17941 atataaactt caaaaatatg ttgaaaatgc aaatcgtaaa aacccaaatg caagaggagt
    18001 ttttgataag gaaattataa aactagatga aagagctaat gttgtaaatt tagtttttag
    18061 tggtgaatta tttaaattta ttcctgttca aaataatcca aataatgttt ggcttgcacc
    18121 tttttctgct gtaactactc ttaaggggga tgaagggcat attgttttgg ctttaataca
    18181 gaattatttt agtgccgtgg aaaatgcttt taaagatggt aattggacta gagctgatga
    18241 aggcttgaaa tttatcaaag aatatcaaga aaaaatagga tataaagtca tgcctagtaa
    18301 aaccaaggtt gaaatggaaa ttttttctaa taaggctgaa attttcgtta aactcgctcc
    18361 tgtatattta attgcgggtt ttttactttt gattcttgtt ttttctaaaa tggtcgtacc
    18421 gaatttaaaa atctctttta tatttaaagt ggtatatgtt ttaaatgttt tagcttttgt
    18481 aattcataca gtaggtcttg gacttcgtgc ttatttatca ggtcatgctc catggagtaa
    18541 tggctatgaa agtatggtgt atatagcttg ggcattgtct ttgtcgggta tatttttctc
    18601 tagaaaaagt cctatagcct tgtcattaac ttctatttta tccggtgttg tattaatggt
    18661 tgcacattta agcgaaatga atccgcaaat tacaaatctt gttcctgtgc tcaattctta
    18721 ttggcttagt attcatgtat ctgttattac tgctagttat ggatttttag gactttgtgc
    18781 cttacttggt atctttacac tgttcttaat gtgttttctt aagaaagatg gaaaatataa
    18841 tcttaatatt ttgagaaata ttacagaggc tacaagaatt aatgaaatgg caatgatttt
    18901 tggactttgt ttgcttactg taggaaattt tttaggtgca atttgggcaa atgaaagttg
    18961 ggggagatat tggagttggg attctaagga aacttgggct ttagttagca ttttggttta
    19021 tgcagcaatt ttgcatctta gaatgattcc aaaatattgt aatcaatttg tgtttgcttt
    19081 atggagtatg tttgcttatt gggttattat tatgacttat tttggagtaa attacttttt
    19141 aacaggactt cattcttacg ctgcaggcga agcggctcaa attcctaatt atgtttattg
    19201 gggatttgca ttgatggtgg ttttagctct ttttgcaaga aggaagcgaa attttgtagg
    19261 caaactgtaa atgagccata tttttttggt tattttttgt gctgctttag cgcttttatt
    19321 gtttttaggc atgattgctt atcttattac aagtgatggc aaaaaaacaa ttaaaaagca
    19381 aaaaactagc caaaagcagc atgtagctga aaagactaaa aaatttgata cagacttaga
    19441 taaaatgata attgctgctt ccgatgttaa actaacagat attgaattaa aagaacttgc
    19501 taaactttat gtgcagacac ataaacttgg ttcaaaaact tctaaagaat tagatgaagc
    19561 aacaaaaaag aaactagaat ttgtttctgc tttggctgca aatattaatg caagtgcaca
    19621 aacagtaagt tacttaaata aagaacttaa gaaaatttct ggatcttaca aaaaagaaat
    19681 tgatgcttat gagcatatgg gattggctaa aagaaaaatt aaagaagata aataatatgg
    19741 tgcgctcaag aggattcgaa cctctggcct tttgaaccgc aatcaaatgc tctatccagc
    19801 tgagctatga gcgcaaaaat aagttaaaat tatatataaa tattcttaaa ataagcaaaa
    19861 ttttgcttat tttgtttgtt ttttagcttt tttaccttca tctaaatcaa attctttagt
    19921 cttttttgaa tgataaaata taaaacctac aatcaaaata cagcaaatca aagaaaaaat
    19981 ataaagtgtg ccataagggc tatctttgaa aaaaagatta ttagtattca ttccaaaaaa
    20041 tcctacgatc aaatttaaag gcaagaaaat agaagaaagt atacttaaaa gataaatact
    20101 tttattcatt ttttcatttt taattgcact tgttaatgta taaagagtat caactcttac
    20161 tagatgttct ttggtgtttt tacttaagat gctgatggat aaatttagaa tttttaaatg
    20221 ttttttgtat tgtgtttgtt cgctaagcaa aagattaaaa gcttcgctta gaagattaat
    20281 ttgctttaga tttttgttga ttttttgtct taacacaaag gattttttgt aaaaattttt
    20341 aacaaaacca ccttttaaga taataccttc tttgtgttct aaaaggtttt gaaaatgagt
    20401 attttgtact ttaaaatctt ctaaaatgga tttaataaaa tttgaaaatt cttctatact
    20461 agaaagctta aattcttcat cttgaagttt ataaattttt tcatcgttaa aaagccaagt
    20521 ttccaaattt aatcccacat aaacaaaaat tttttgtcca taaatttcac tatagaaagt
    20581 ttctaaattc tttgcttgta ggattttttt tagattttcg tgtagttcta gcattttatt
    20641 tgcctcttaa gtgataaaaa tttcttttaa attgcgtaaa agaattattc aaaattgctt
    20701 cacgcatctt tcttgcaagt tcaagataat aatgtagatt gtgcaaactt gccaaacgaa
    20761 aaaaagtaag ttctttagct ttgaaaagat ggtttaaata accccttgaa aaattacaac
    20821 aagtataaca tgagcaagca ggatctatgg cttcatgatc gttgataaat tctgcttttt
    20881 tgatattaaa ttttccaaaa cttgtgaaaa atgttccatt tcttgcattt ctagttggca
    20941 tcacgcagtc aaacatatct acccctcgct caacattttc tactaaatct tcaggagttc
    21001 ctacgcccat taaatatctt ggacgatttt catctagata agggtttaag ttttggactg
    21061 tttcgtacat caaggcgttt tcttcgccca cgctaagccc acctatagct aaaccatcaa
    21121 atggcatttc atttaaactt aaagcacaac gctttctttc tttgtaatct gtaccacctt
    21181 ggataatacc aaaaatattt tgccctatac ctataccttt attttgcata cttttatgat
    21241 aagtaatagc ctcttttgcc caaagtatag tgcgatcaac agaaatttta accctttctt
    21301 tggttgcggg tagggctact aaatcatcta aaatcatcat aatatcagaa ttaaaatcat
    21361 attgagtatc taaaacactt tttggagtaa aaagatgacg actcccatcg atgtgacttt
    21421 taaattctat accttcatta aaatgtttag aatttttact taaagaaaaa gcctgaaaac
    21481 caccactatc ggttaaaaaa cttctatcaa atttcgtaaa accatgcaaa cctccaaaat
    21541 cttttaccac tttggaagtt ggacgcaagt acatgtgata ggtatttgct aaaataattt
    21601 ttgcatcaag ctcatttttc atatcattag catcaagact tttaaccgct cctactgtgc
    21661 caacaggcat aaaaacaggg gttaaaaaag tgctgtgtgc ggtagtgatt tcacaaaccc
    21721 ttgccattcc atctttatgc tttaatttaa attccatttg ttataatttc ctttttggag
    21781 tttaaaatga ataatatttt aattataata gacggtattt tagcaaagca tttcttagaa
    21841 aggctttgtt ttgaaaaagg cttaggttac ttttttacag tagtgtgtca aaatagtgaa
    21901 aaaaataact taaatatttc tagtgagtat attgacttgc attattttga tcctacaagc
    21961 acagcgcgtc ttgaaaatat tatgagtaaa gattttaaac aggcttttat ttatatgcaa
    22021 gatgaatttg aaactaaaaa aagttatgag gctttgcgtt ctttaaatcc aaatttagaa
    22081 atagaaataa tggatttttg ggggttaagt gttaatgata ctcatgcaaa tttagctgat
    22141 gctagaatga ctttaagccg tagatttatg gattttttac cagatattgc tttaacagct
    22201 cagtatatag gacttggggt tggagagatt atggaagtaa aaattccagc agggtctatt
    22261 tttgcttata ggcacataag ttcaatacaa caaaaaaggt ggcgcatagt ccttatttat
    22321 agaaattcta agatttattt tgtaaaacca tcttttgttt tagagccaaa tgatagcatt
    22381 ttgatcgttg gagatcctgt tgttttacaa agtatttttc ataatataag aggcaaagca
    22441 gggcaatttc ctatgccttt tggaagtaat gtttttgctt taattgatat gaaaaatatg
    22501 aatcaaaata tgcaagaaag agtgcttgat actactttaa aattaactca aaaaagcaat
    22561 gcaaaaagat tttttataca tgttatcaat cctaaattag gggtaatgta tgaaaaatta
    22621 aaaaaacttt ctgaggataa agaaggtgtg ttttttgatt atttcaacac ggattttaaa
    22681 caaatttcca catggttgca aaataatgat gtaggattag ttgtaaccga tataaaaaat
    22741 tttgagaaag aaaaacaagc tttttttgat ttaaaaattc ctattatgaa agtgggtgaa
    22801 gcttcttttg atgaacttaa agaagcgatt attttaagtg ctgatgagag tgaacttgaa
    22861 aacaatgcaa atgtcattac tgatttaagt aaacagcttg attttggagt tattttatat
    22921 tattataatc caaattctca aaatactaca gatatggagg agtattttag aagtttatct
    22981 aagctttatg ataaaaatat acaaattatt aataaaaatg atgaaaaccc tcttttaaat
    23041 ttgcaatatc gcgaagattt gttacaattt gtgagttttc aaaaagaatt actaaataga
    23101 gattttggca gaaatttaag tacaaattta aataggcatt attataaaat gagacaaaat
    23161 taccaacttt tcataccggt agaataaata attaattaaa tgtgatagaa taaacgcaaa
    23221 aagagtagtt caatgcaagt agaagttaag ttaaaagaaa atgcttataa ggtttatatt
    23281 gatgaacttg aagaattaga atttgatagt aaggttttta tactttcaaa tcctaagatt
    23341 tcaggtcttc atttgaaaac attactttct aaaattaagg caagagaaat ttttattgcc
    23401 gctgtaaaag atggtgaaga atataaaaat ttaagcacca tggaagaaat tttaaaccaa
    23461 atgtttaatt ctaaattgga tagaaaaagc gtgcttataa gttttggtgg tggcgtgatt
    23521 agtgatatgg gcggatttgc tgctagtatt tatcaaagag gcattgattt tataaatatt
    23581 cctactacac ttttagcttg tgttgatgca gcagtaggtg gaaaaacagg tgttaataat
    23641 aattttggta aaaatcttat tggcactttt tatcaaccta aagctgtata ttgtgagagt
    23701 tcttttttaa agactttgag ctctagagaa cttgctgcag gcatggctga atttattaaa
    23761 atggcagcaa tgtttgatga tagtatgctt gattttatag aaaaaattga tgaaaaaagt
    23821 ttcttaaatg ctacttgtga gaatgaaatt tttactcaaa ttatagcaag aagcatagaa
    23881 cttaaatcaa gggttgttga acaagatgaa aaagaatcag ggcttagaat gcttttaaat
    23941 tatggtcata cttttgctca tgttatagaa aattttacag attataagct ttatttacac
    24001 ggagaagcgg tggctatagg tatggttatg gcaaatcaat tggctttaaa tttaggattt
    24061 ttggataaaa tgcaaagtca aaaaataaaa gatattttac ttaaattcgg tttgccaata
    24121 tcatataaaa tcaacaatgt agatgaattt tatgaagctt ttttcatgga taaaaaaagc
    24181 tctaataaaa aaatcaattt tgttcttgct ggccctttgg gtaagggttt gataaaaggt
    24241 gatatttcta aagaagatat aattgcaact ttaagagaat tccaatgaaa aaaattatta
    24301 ttttaacctt ttttgttgtt tttgcttttg gtgatgtaaa tcggactatt attaataata
    24361 taaatgagaa aattaatact ttaaatactg taatcagtgc tagtatttgg aatatacgtt
    24421 atgaaaattt tataaaatat caagatataa atgatgaatt aatcatttta aatcttaatt
    24481 taaaaaagac ttccgatatt caccaacaag aagaacttaa acgcaagata gcaaatttag
    24541 aagagcaatt gagcttgctt aaagaatata aagatttaaa ttttgcacaa agtcttagtg
    24601 cccctgataa tatagaaact ttatctaagc ttactaatcc tttggctatt ataggagctt
    24661 tttctcatat taagaaatta aaaggagaaa aggaagagta tatatttaaa tttaatgatt
    24721 ttaaaaattt agtagataaa atcagggaaa aaaactcaga acttaaggaa ttagttgggc
    24781 ttaaaccaag tgttgagaat atagaagctt taaaagcttc ggataaaaag ttggaagaat
    24841 ttgagcaagc tttaaatttt gctagtgttt cttattctgt ttatgagaaa aaaattgatg
    24901 aagagctttc tcgagtaagt gctgagatta aagttcaaag cttaagggct gtaaatatac
    24961 ttgttgctat tgttattgtt atagctatag cttttatgtt gaaatttatt gctaaaaaat
    25021 atattaaaga tagtgaaaga tattatactg ctacgaagat tattaatttt attaatataa
    25081 atattatttt tcttattttg ctctttgctt atatagaaaa tattacttat cttgtaacta
    25141 tacttggttt tgcttctgca ggcttagcta ttgctatgaa agatatgttt atgtctatgc
    25201 ttggatggtg tgtgattatt tttggcggaa gttttagagt aggggatcgt gtaaaagttt
    25261 ttcaaaatga tactacctat ataggagata ttatagatat ttctttttta cgcattactc
    25321 tttatgaaga gcttacgctt gaaacttata ataaaaatcg tcgtagtggg cgtattatat
    25381 ttattcctaa taactatgtt tttacaaatt tgcttgctaa ttatactcat catggtatga
    25441 aaaccgtgct tgatggcatt gatataagtg ttacttttga tagcaatctt gataaggcac
    25501 aagaaattgt ggaaaatatt gtgacacgtc atgccaaagg ttatactgag cttgctagaa
    25561 aaaatatagc tcgtttacaa catgaatata gtattaaaaa tcctaaagtg gagccaaggt
    25621 tttttatgtt ttttgaacat tggggaatgc gaatttctgc atggtatatg accaatgctt
    25681 atgcggcttt agtattaaga agtacgatta gtaaagagat tataaaagaa tttaataagc
    25741 ataaagatat aaaaattgct tatccatcgc aaaatttata tttaggaaat ttaaatcaaa
    25801 atcattttga acaacatcat gaaaatatgc attttcatgc aaggaataaa gattgaaaga
    25861 aaaagttttt tttaaaacct ttgggtgtcg cacaaatatt tatgatacag agcttttaaa
    25921 aagttatgta aaagattatg agattataaa tgatgagaat aaagcacaaa ttatcgttgt
    25981 aaattcttgc acggttacaa atggagctga tagcgggata aagtcttatg taaataccat
    26041 gcaaaaaaaa ggcattaaag ttatacttac aggttgtggt gctgtaagca aaggtaagga
    26101 gcttttagat aaaaaacaag tttttggagt gcttggagcg tcaaataaag ataaaatcaa
    26161 tgaattttta ggagcaaaga caagttttta tgaacttgga aatttaaatt ttattgataa
    26221 agatatagtt tgtgagtatg aaaatcatac caaagctttt gtgaaaattc aagaaggttg
    26281 tgattttgct tgttcttatt gtattatccc tagcgtgcgg ggtaaatcaa gaagtgtaga
    26341 tgaaaaagct cttttaaaac aagttgaaat tttgggggct aatggctata gtgaaattgt
    26401 tttaacaggg actaatatag gttcatatgg gcttaaaaat ggcacaagtt taggcaagct
    26461 tttgcaaaaa atgggacaaa tttcaggtat aaaacgcata aggttaggta gtttagaacc
    26521 cgcacaaatt gatgaaagtt ttttagaaat tttagatgag acttggcttg aaaggcattt
    26581 gcatattgct ttgcaacata caagtgaaaa aatgcttcgc ataatgcgaa gaagatcgca
    26641 tacggataat gatttaaagc tttttaatac tatagcaagc aaaggatatg ctttagggac
    26701 ggattttata gtagctcatc caggcgagag tgaagaagtg tggcaagaag ctttgaaaaa
    26761 atttaaagaa tttccactca ctcatattca tgcttttatt tttagtccta gaaacaacac
    26821 gcattctgct accatgaaag atgtgataaa tggaacttta gctaaagaaa gattaaacat
    26881 tttaaaatcc atagtagaaa aaaataatta tgaatttaga aaaaaaaatc aagttccgct
    26941 tgaagttttg gtggaaaatc aaaaagatgg tttttttgag gggtatgatc agttttttaa
    27001 caagatcaaa attaaaagtg ataaagatat agctaaagaa tggatcttta tatctcaata
    27061 tgaagcgcaa gaaaagtcta actttgcaaa tttaaaaggc tagataatga aaaataaaaa
    27121 gataatttta gcatctttta tggttttatg tatgcttttg ggaattttat attttaaaaa
    27181 tgaacctaaa tatatagatg aaaatcttta tcaaagtctg ttaagtcaaa atttaatcca
    27241 aaaagctgtg attgataaag acgaaatttg gcttaaggcg gaaggtgaaa attacgtaat
    27301 tataaaagat ggcatagata taaaaacact tttagcaaaa gttcctgtag aggttaaaaa
    27361 agataacacg ctttgggtgt tttttatttt acttgttttt attatcgcac tttttataag
    27421 tcttggctat tttgctcgta aaaaagagtt agctaaatat ccaatatcaa ataagaatca
    27481 aaatcacact caagctcaaa attcaaatat aaatttagaa agttctcata taaaacctgt
    27541 gatttcaaat attactttta atgatgtagc aggtgttgat gaagttaaaa tggagctaag
    27601 cgaacttgtg gattttttac aaaatcctaa aaaatataaa gaatttggtg taaaaatgcc
    27661 aaaaggtgtt ttaatggtag gcccacctgg tgtaggaaaa acattgatag caaaagcagt
    27721 tgcaggagaa gcaggggtgc cattttttta tcaaagcggt tcaagttttg ttgaaattta
    27781 tgtaggtatg ggtgcaaaaa gagttagaga gcttttttca aaagctaaaa tgatggctcc
    27841 tagtatagtt tttatcgatg aaatagatgc tgtaggtaag gcaagaggag aaatgtcaaa
    27901 tgttgaaaga gatagcactt taaatcaact tttaactcaa atggatggtt ttgaggataa
    27961 tagtggggtt atagttatag ctgcgacaaa taaaatcgaa cttatggatc ctgctttatt
    28021 gcgttctggg cgttttgata ggagaatttt tttatctttg cctgatttta aggatagact
    28081 taaaatttta gaaatttata tgaaagataa aaacaataat gtcaatttaa ataaaatcgc
    28141 caaagcaagc gtaggtttta gtggagcagg gcttgaaact ttggtaaatg aagcagcaat
    28201 taatgcttta agaagaaata gtgctttagt cgaggaaagt gatttttatg ctgtattaaa
    28261 taaagttctt ttaggcaaga aaaagatttt aagttttaat gatgaagaga agaaaattca
    28321 agccgcttat caggctgcaa aagctttgag tgcgtattat tttgacatag gatttgaaaa
    28381 aatcactctc attgaagatc gttttaaaga atatgagcat aatataagat caaaatcaga
    28441 gcttatcaat cgtataaaag tttatttggc tggttctaga gctatgagat tgatttataa
    28501 tgaaagttat actaactcgc aagatgattt tttaaagatt aaagaattgc ttgattatat
    28561 gttgagtttt gatatgttag aagagccaaa tttaaatgaa caaaaaaaag aaatggatga
    28621 atttttaaat tctatgaagg ataaaatttt aaaattatca gagcttttgc ttgaaaaaga
    28681 aaagatagaa catgatgatg ttaaaaatat aatgcaggtt tgattatatt ttaatcatca
    28741 atttctttgt gcaagatagt tccattaaaa tctataagaa tttttacatc gttatcaagt
    28801 ttaatcttgt aatgattgat ttttctttcg atttctctag cttttatatt tggaaattcg
    28861 tttttaatga tattggctaa attttgaggt aaaaaatcta gatcaaaagg aaaggcttta
    28921 ttttcaattt ccttccaagc tccatctatg tcaaattcaa gttctgtccc atcgctaaga
    28981 tagacttcat aggaattttt gtctttttgt acgatcccta tgggtgcttt gaaattatgt
    29041 tgtaaaaatt ctttagaaac acttggcaaa ttatcagcag aaattattat atcagc
//
LOCUS       DAZAND010000007        27346 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.007, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000007 DAZAND010000000
VERSION     DAZAND010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27346
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.007"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            14..286
                     /locus_tag="ACHDOB_000247"
     CDS             14..286
                     /locus_tag="ACHDOB_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325205.1"
                     /translation="MSFTDLYFDREEKRIYNQTKELIANEFESKENLENIFANLQDFK
                     NSLEISLEDDEEIAISLQAYGDEFIRNAYELLERVRKFEKQCKKLF"
     gene            643..912
                     /locus_tag="ACHDOB_000248"
     CDS             643..912
                     /locus_tag="ACHDOB_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325206.1"
                     /translation="MKAYHTKEQVIIKLSKDEYRKEMKLNKSLKDENRFLKTEISNLE
                     NEKIELLKELKDQIEANMKNIKEISSLQNKIYELLYIKERSKLCS"
     gene            903..1160
                     /locus_tag="ACHDOB_000249"
     CDS             903..1160
                     /locus_tag="ACHDOB_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325207.1"
                     /translation="MFLNSKKNEKIRYLEKEIQRLKGVIALKDTAINEISLKLEEEIK
                     INVKLSNFRIKILDALGLIGVFKNDDKAIKEVKRLKDKECK"
     gene            1151..1378
                     /locus_tag="ACHDOB_000250"
     CDS             1151..1378
                     /locus_tag="ACHDOB_000250"
                     /inference="COORDINATES: protein motif:HMM:NF025456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFN3325208.1"
                     /translation="MQITSKQQEKIVLELLLKNGIIDNFYCIDKRITTRLGAYIYNLR
                     NKGYEIETVRNKETRNTFYILKSTPKIKKAG"
     gene            1380..2234
                     /locus_tag="ACHDOB_000251"
     CDS             1380..2234
                     /locus_tag="ACHDOB_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lambda-exonuclease family protein"
                     /protein_id="HFN3325209.1"
                     /translation="MNCRIIDLEQGSHEWLNFRKGKIGASMVASCVGIKGAFNSKEET
                     KDIILGLKEVYQNEAMKKGNNYEALIRARVEFLHSVSITPVVLQSLENEMFIASLDGI
                     DENGVVYEFKYSQDEYDFIKRNKKPSDKYYAQVQFQLYISGKEKCIFVAMNKEEEIVE
                     CEVSKDEAYQEWLVKNIKQFILDYIIDQKSEYKELEDTKAKNLTIEIIRLENTIKPIK
                     EKLESLKKELIALANGEKARCLDITIYPQSRTTIDYKGFLEQKNITVPKEFYKESISM
                     CLKIKKGA"
     gene            2236..2970
                     /locus_tag="ACHDOB_000252"
     CDS             2236..2970
                     /locus_tag="ACHDOB_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325210.1"
                     /translation="MSNEVVLKEENKLEINFNPYELALVKGDLSKLSDVERASYVKNL
                     CESLSLNMLTKPFEYIVLNGKLTLYANKSATDQLRQIRKVSITKTEVAQVGDIYMVTA
                     YAATPDGRTDCDTGALNIKNLGGDNLANAIMKAITKAKRRVTLSICGLGMLDESELET
                     IKEKRFLNPNENLKVWGSDEKAIENKAKEIKALGAELRKFMSDNGLNTQEQNNFIKKH
                     SLFTSEKIQEVLNNKDEFLTQLKGGL"
     gene            2970..3665
                     /locus_tag="ACHDOB_000253"
     CDS             2970..3665
                     /locus_tag="ACHDOB_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325211.1"
                     /translation="MLPAFKASFEVANYSPSVEYLSEGGLYSGVFRKAFLYDKLASDG
                     SNNTFICFEFLTRKEQKLAIFNLFVAKNNDFSYINKNGEKENYLGFRQLNAIMKFFGI
                     DELDFSENGNENVFGVQTEVIYLNSLVNKLLVLGFGTEEYLSKNGEIANKIFLDRIFN
                     EKMQNMDEFQNNKEPLSIKSFKARHKSLNNDNNKSFIPKENQSYNPYGNEVKNNNNEK
                     YIEIGDDDESLPF"
     gene            3646..3924
                     /locus_tag="ACHDOB_000254"
     CDS             3646..3924
                     /locus_tag="ACHDOB_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325212.1"
                     /translation="MKVCRSNYLEIVKIIPFSERRTCFCDFAKQNEIKIEKINYKNHI
                     SKKELRKAYKIYKSKPSGRNFFHEKKLIVKAFEDVEKFLRSENEVKRF"
     gene            3905..4324
                     /locus_tag="ACHDOB_000255"
     CDS             3905..4324
                     /locus_tag="ACHDOB_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YopX family protein"
                     /protein_id="HFN3325213.1"
                     /translation="MKLKDFDFRIWDKNYTGCDNKNCKCQSNFIYGEEAKIRLSEFNN
                     DAEIELWTGYFDKNGNKIYENDILEYEPLEELYHITRDNTYKMFKIEIFSKNFNNKIY
                     KRKAEPDISFLKVFKSEKNMKVIGNIHENADLLVVKE"
     gene            4329..4583
                     /locus_tag="ACHDOB_000256"
     CDS             4329..4583
                     /locus_tag="ACHDOB_000256"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325214.1"
                     /translation="MLEIDNNKEFKILKLNKQEILKIGGYGICDSCNKILSNDGFMIC
                     VLFSCYCEKCYQEWYKVAINIEKDVYENIKSKIINAELLK"
     gene            4580..4930
                     /locus_tag="ACHDOB_000257"
     CDS             4580..4930
                     /locus_tag="ACHDOB_000257"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325215.1"
                     /translation="MKLVDKLKKAYDYKKELYKAEKGSSSKEYHIENAEIFQDFIELE
                     LLQCEDIERRYFLMQIYRYGYQNIRSLNSKLAFKAKLDNDDINFIKILKEANILHALN
                     EIYTTKEVKKIAKD"
     gene            4936..5610
                     /locus_tag="ACHDOB_000258"
     CDS             4936..5610
                     /locus_tag="ACHDOB_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325216.1"
                     /translation="MTEIQFNEIKERLADWRSERSLTYENQQAEFLGNVFEKVSEYFR
                     AKDDLERVKALCDIAVFCFNVNDVKFSNYECYMKSDKVDFEIFDIASQINSIAIYKAN
                     FEIDSVKVILDTLIALLHKKCEILKFDFYKCMLEKIKEIESRTGFYDERLKKFVDTIC
                     AFSKDEALSNVSKDFGFLGNSIIYKLTQEDKNFWFITCKEIETNLQIDYKVKKIYKAD
                     YKSCRL"
     gene            5729..6271
                     /locus_tag="ACHDOB_000259"
     CDS             5729..6271
                     /locus_tag="ACHDOB_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HFN3325217.1"
                     /translation="MGILKRLDETIIIENDRKSEKELVEYCILEGISLNNANLENINL
                     SELDFNNAFINGASFKNANLNDISSKNASFIDCDFSGASFHFCNFLRTEFENCIFENV
                     DLRDCIGDMKNIFSVVLDTYVMTFTKTMMNLGCDTKTIKEWRNLSVDDLEDEEQKWLW
                     SYYKDTIFEIIDKRLGVENG"
     gene            6264..6434
                     /locus_tag="ACHDOB_000260"
     CDS             6264..6434
                     /locus_tag="ACHDOB_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFN3325218.1"
                     /translation="MVKKYFREKELSEYLGVSVTSLFKLRQDGKIPYIRIGKSIRYEI
                     KEIEKWLKAKRH"
     gene            complement(6431..7633)
                     /locus_tag="ACHDOB_000261"
     CDS             complement(6431..7633)
                     /locus_tag="ACHDOB_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HFN3325219.1"
                     /translation="MLTQKDIDNLEIKDKRYMISVGEPKELYVRVNPTGKKVFYLRAS
                     KFKNFITIGECQKGVLNVTNAREKAKDLLKSMYDGKFIGKNDKVMTLEKANFLYVDIK
                     SKKLNSATIKKEQSIFKKYIIPTLGQKDINELKKDDFLPIYDLMQKKGIYETIKKNIS
                     LLCRIFEISRQRGDLKTDIILQLKDLKKFYNEANHNKVKHFKAIVEEQEIKNMLECMK
                     EYKNHPRTNTTIINAIYFTLLTAQRSKNIRFAKWSDIDFENNLWIIKADEMKVRSNGD
                     NIIPLNKYALKILDIQRILNGDKKYIFANNNGTISENFAVRFFKFYNLEHTIHGYRST
                     FRSVYTNKSNELIQQGISKDIAEMILHHISGNEIERAYNRAKAIDLRVKLMQWYGNYL
                     NSLCEFCF"
     gene            complement(7816..7892)
                     /locus_tag="ACHDOB_000262"
     tRNA            complement(7816..7892)
                     /locus_tag="ACHDOB_000262"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7856..7858),aa:Arg,seq:cct)
     gene            complement(7921..9996)
                     /gene="fusA"
                     /locus_tag="ACHDOB_000263"
     CDS             complement(7921..9996)
                     /gene="fusA"
                     /locus_tag="ACHDOB_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HFN3325220.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            complement(10009..10479)
                     /gene="rpsG"
                     /locus_tag="ACHDOB_000264"
     CDS             complement(10009..10479)
                     /gene="rpsG"
                     /locus_tag="ACHDOB_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HFN3325221.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            complement(10549..10935)
                     /gene="rpsL"
                     /locus_tag="ACHDOB_000265"
     CDS             complement(10549..10935)
                     /gene="rpsL"
                     /locus_tag="ACHDOB_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HFN3325222.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGTAK"
     gene            complement(11055..15608)
                     /gene="rpoC"
                     /locus_tag="ACHDOB_000266"
     CDS             complement(11055..15608)
                     /gene="rpoC"
                     /locus_tag="ACHDOB_000266"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HFN3325223.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANADSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIIKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAILLVEPKIKTPFKGVINIENIHEDVIVSIKNKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYQLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(15601..19737)
                     /gene="rpoB"
                     /locus_tag="ACHDOB_000267"
     CDS             complement(15601..19737)
                     /gene="rpoB"
                     /locus_tag="ACHDOB_000267"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HFN3325224.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLIGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLASEKEFIKSLSDEELLNYA
                     RDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(19846..20223)
                     /gene="rplL"
                     /locus_tag="ACHDOB_000268"
     CDS             complement(19846..20223)
                     /gene="rplL"
                     /locus_tag="ACHDOB_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HFN3325225.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMVAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(20244..20723)
                     /gene="rplJ"
                     /locus_tag="ACHDOB_000269"
     CDS             complement(20244..20723)
                     /gene="rplJ"
                     /locus_tag="ACHDOB_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HFN3325226.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLSVSKVAAKFEENNDKFE
                     IKTAYIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(20875..21576)
                     /gene="rplA"
                     /locus_tag="ACHDOB_000270"
     CDS             complement(20875..21576)
                     /gene="rplA"
                     /locus_tag="ACHDOB_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HFN3325227.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(21631..22056)
                     /gene="rplK"
                     /locus_tag="ACHDOB_000271"
     CDS             complement(21631..22056)
                     /gene="rplK"
                     /locus_tag="ACHDOB_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HFN3325228.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(22082..22615)
                     /gene="nusG"
                     /locus_tag="ACHDOB_000272"
     CDS             complement(22082..22615)
                     /gene="nusG"
                     /locus_tag="ACHDOB_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HFN3325229.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(22625..22804)
                     /gene="secE"
                     /locus_tag="ACHDOB_000273"
     CDS             complement(22625..22804)
                     /gene="secE"
                     /locus_tag="ACHDOB_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HFN3325230.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVAVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(22823..22898)
                     /locus_tag="ACHDOB_000274"
     tRNA            complement(22823..22898)
                     /locus_tag="ACHDOB_000274"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(22863..22865),aa:Trp,seq:cca)
     gene            complement(22911..23069)
                     /gene="rpmG"
                     /locus_tag="ACHDOB_000275"
     CDS             complement(22911..23069)
                     /gene="rpmG"
                     /locus_tag="ACHDOB_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HFN3325231.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(23122..24321)
                     /gene="tuf"
                     /locus_tag="ACHDOB_000276"
     CDS             complement(23122..24321)
                     /gene="tuf"
                     /locus_tag="ACHDOB_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HFN3325232.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(24390..24464)
                     /locus_tag="ACHDOB_000277"
     tRNA            complement(24390..24464)
                     /locus_tag="ACHDOB_000277"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(24430..24432),aa:Thr,seq:ggt)
     gene            complement(24569..24645)
                     /locus_tag="ACHDOB_000278"
     tRNA            complement(24569..24645)
                     /locus_tag="ACHDOB_000278"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(24609..24611),aa:Gly,seq:tcc)
     gene            complement(24652..24737)
                     /locus_tag="ACHDOB_000279"
     tRNA            complement(24652..24737)
                     /locus_tag="ACHDOB_000279"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(24701..24703),aa:Tyr,seq:gta)
     gene            complement(24787..24862)
                     /locus_tag="ACHDOB_000280"
     tRNA            complement(24787..24862)
                     /locus_tag="ACHDOB_000280"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(24827..24829),aa:Thr,seq:tgt)
     gene            complement(24954..25714)
                     /locus_tag="ACHDOB_000281"
                     /pseudo
     CDS             complement(24954..25714)
                     /locus_tag="ACHDOB_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343903.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
     gene            complement(25716..26372)
                     /locus_tag="ACHDOB_000282"
     CDS             complement(25716..26372)
                     /locus_tag="ACHDOB_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN3325233.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFVYIIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(26365..27066)
                     /locus_tag="ACHDOB_000283"
     CDS             complement(26365..27066)
                     /locus_tag="ACHDOB_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN3325234.1"
                     /translation="MDFDFILVQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
     gene            complement(27083..>27346)
                     /gene="nssR"
                     /locus_tag="ACHDOB_000284"
     CDS             complement(27083..>27346)
                     /gene="nssR"
                     /locus_tag="ACHDOB_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HFN3325235.1"
                     /translation="SLFDKIKILEKKLSQNALDLRTRLLKYLLENEKNLDTISQKQIA
                     IDLNVRAQSLSRVLKELKISELIDTKKGRIEILNKDMIMKELW"
BASE COUNT         9213 a         4850 c         3877 g         9406 t
ORIGIN      
        1 aaaaggataa aaaatgagtt ttacagatct ttattttgat agagaagaaa aaagaattta
       61 taaccaaaca aaagaattaa ttgcaaatga gtttgaaagc aaagagaatt tagaaaatat
      121 atttgcaaac ttgcaagatt ttaaaaactc tttggaaata agcttagaag atgatgaaga
      181 aatagcaata tctttacaag cttatggaga tgaatttata agaaatgctt atgagctttt
      241 agagagagtt agaaaattcg aaaaacaatg taaaaagctt ttttaaaagt ttaacaagtc
      301 ctttaaaaag ggctttctta agcttttgac cgcttgaaaa ttaagcttta ctattgcgtt
      361 gatagttctg tatagcggaa gggttagcaa gttatccata aactttgctc gttattattg
      421 tttatagtgc tatttttcaa aggttttctt gcactttaaa aacgacagaa aatcaagagt
      481 ttaagaaagc ttgcaagatt tgctcggctt ttcttaaact cctttaatgc ttaaatgggg
      541 caacttttac aaattaacta cttgagaatt tacctttttg ttttatttcc tattctaaag
      601 aactcagttg tcccttttaa gcattaatct aaaaggaaaa aaatgaaagc ttatcacaca
      661 aaagaacaag tcattataaa actaagtaaa gatgaatata gaaaagaaat gaagctaaat
      721 aagtctttaa aagatgaaaa tagattttta aaaactgaaa tttctaatct tgaaaatgaa
      781 aaaatagaac ttttaaaaga gttaaaagat caaatagaag caaatatgaa aaatataaaa
      841 gaaattagct ctttgcaaaa taaaatttat gagcttcttt atataaaaga aaggtcgaaa
      901 ctatgttcct aaatagtaaa aaaaatgaaa aaataagata tttagaaaaa gaaattcaaa
      961 ggttaaaagg tgtaatagca ttaaaagata ctgctataaa tgaaatttca ttgaagctag
     1021 aagaagaaat taaaatcaat gtaaaactta gtaattttcg tataaaaata cttgatgctt
     1081 tagggcttat aggcgttttt aaaaatgatg ataaagctat taaagaagta aaaagattaa
     1141 aggataaaga atgcaaataa catcaaaaca acaagaaaaa atagttttag aactattatt
     1201 aaaaaatgga attatagata atttctattg cattgataaa agaattacta caaggcttgg
     1261 agcttatatt tataatcttc gaaataaagg ttatgaaata gaaacagtta gaaacaaaga
     1321 aacgagaaat actttttata ttttaaaaag cactccaaaa ataaaaaagg caggataaaa
     1381 tgaattgcag aataattgac ttagaacaag gtagccatga atggttaaat tttagaaaag
     1441 gaaaaatagg tgcatcgatg gtagcatctt gcgtaggtat caaaggtgct tttaattcca
     1501 aagaagaaac aaaagatatc atcttgggac ttaaagaagt ttatcaaaat gaagctatga
     1561 aaaaaggcaa taactatgaa gctttgatta gagctagagt tgagttttta cattctgtga
     1621 gtatcactcc tgtagttttg caaagtctag aaaatgaaat gtttatagcg agcttagatg
     1681 gtattgatga aaatggggtt gtttatgagt ttaaatattc gcaagatgag tatgatttta
     1741 tcaaaagaaa taaaaagcca agtgataaat actacgctca agtgcaattt caactctata
     1801 tcagtggtaa agaaaaatgc atttttgtag ccatgaataa agaagaagag attgtagagt
     1861 gcgaagtttc aaaagatgaa gcttatcaag aatggttggt taaaaatata aagcaattta
     1921 tattagatta tatcatagat caaaaaagcg aatataaaga gcttgaagat actaaagcaa
     1981 aaaatctaac gattgaaatt ataaggcttg aaaacacgat taaacctatt aaagaaaagc
     2041 tagaaagtct taaaaaagaa ctcatagcct tagcaaatgg agaaaaagca agatgtttgg
     2101 atattacaat ttatccgcaa agtagaacta caattgatta taagggcttt ttagagcaaa
     2161 aaaatattac tgtgcctaaa gagttttata aagaaagtat ttcaatgtgt ttaaaaatca
     2221 aaaaaggagc ataaaatgag taatgaagtt gtattaaaag aagaaaataa attagaaata
     2281 aattttaatc cttatgagtt ggctttggta aaaggtgatt tatcaaaact tagtgatgta
     2341 gaacgagcga gttatgttaa aaatctttgt gaaagtttaa gcttaaacat gcttacaaag
     2401 ccttttgaat acatagtatt aaatggcaaa cttactttat atgcaaataa atcagcaaca
     2461 gatcagctaa gacaaataag aaaagtaagt attacaaaaa cagaagtggc acaagttggc
     2521 gatatttata tggttacagc ctacgcagca acaccagatg gaagaactga ttgcgataca
     2581 ggtgctttaa atattaaaaa tttaggtggc gataatttag caaacgcaat aatgaaagct
     2641 atcacaaaag caaaaaggcg tgtaacctta agtatttgcg gacttggaat gcttgatgag
     2701 agtgaattag aaacaataaa ggaaaagcga tttttaaatc caaatgaaaa tttaaaagtt
     2761 tggggtagtg atgaaaaagc tatagaaaat aaagcaaaag agataaaagc tttaggtgct
     2821 gaacttagaa aatttatgag tgataatggt ttaaacaccc aagagcaaaa caattttata
     2881 aaaaaacatt ctttatttac aagtgaaaaa atacaagaag ttctaaataa taaagatgaa
     2941 tttttaacac aattaaaagg aggattataa tgttaccagc atttaaggca agttttgaag
     3001 tggcaaatta ttcgccaagc gtagagtatt taagtgaagg tgggctttat agtggagttt
     3061 tccgcaaagc ctttttatat gataaattgg caagcgatgg aagcaataat acttttattt
     3121 gttttgaatt tttaaccaga aaagagcaaa aactagctat ttttaatctt tttgtagcta
     3181 aaaataacga ttttagctat atcaataaaa atggagaaaa agaaaattat ttaggattta
     3241 gacaattaaa tgccattatg aaattctttg gaattgatga acttgatttt agtgaaaatg
     3301 gaaatgagaa tgtttttgga gtgcagactg aagttattta tctaaattct ttagttaata
     3361 aacttttagt tttaggtttt ggaacagaag aatatttaag taaaaatgga gaaattgcta
     3421 acaaaatctt tcttgataga atttttaatg aaaaaatgca aaacatggat gagtttcaaa
     3481 ataataaaga gcctttatct ataaaatctt ttaaagcaag gcataaatct ttaaataacg
     3541 acaataataa atcatttatt ccaaaagaaa atcaaagcta taatccttat ggaaatgaag
     3601 taaaaaacaa taacaatgaa aaatatatcg aaataggaga tgatgatgaa agtttgccgt
     3661 tctaattatc ttgaaattgt aaaaatcata ccatttagcg aaagaagaac ttgtttttgt
     3721 gattttgcta aacaaaatga aataaaaatc gagaaaataa attataaaaa tcacataagc
     3781 aaaaaagaac tcagaaaggc ttacaaaatt tacaaaagta agccaagtgg aagaaatttc
     3841 tttcatgaaa aaaagcttat tgttaaagct tttgaagatg ttgagaaatt tttaaggagt
     3901 gagaatgaag ttaaaagatt ttgattttag gatttgggat aagaattata caggttgtga
     3961 taataaaaac tgcaaatgtc aatcgaactt tatttatgga gaagaagcaa aaataagact
     4021 atccgaattt aataatgatg ctgaaataga gctatggact ggttattttg ataaaaatgg
     4081 aaataaaatc tatgaaaatg atatattaga atatgagcct cttgaagaac tttatcatat
     4141 tacaagagat aatacttata aaatgtttaa aatagaaatt tttagtaaaa actttaataa
     4201 taaaatttat aaaaggaaag ctgaacctga tatatctttt ttaaaagtat ttaagtcaga
     4261 aaaaaatatg aaagttatcg gtaatatcca cgaaaacgcg gatttattag tagttaagga
     4321 gtaaaaaaat gctagagata gataataata aagaatttaa aatcttaaaa ctaaacaaac
     4381 aagaaatttt aaaaattgga ggttatggca tttgcgacag ttgtaataaa attttaagca
     4441 atgatggatt tatgatctgt gttttattta gttgctattg cgaaaaatgc taccaagaat
     4501 ggtataaagt tgcgattaat attgaaaaag atgtttatga aaatattaaa tcgaaaataa
     4561 taaatgcgga gttgctaaaa tgaaattagt tgataagctt aaaaaagctt atgattacaa
     4621 aaaagaactt tataaagccg aaaaaggctc aagctctaaa gaatatcaca tagaaaacgc
     4681 cgagatattc caagatttta tagaattaga attattgcaa tgcgaagata tcgaaagaag
     4741 atatttttta atgcaaattt atagatatgg ttatcaaaac ataagatctt taaactcaaa
     4801 attagctttt aaagcaaaac ttgataatga tgatatcaac tttataaaaa tactaaaaga
     4861 agctaatatc ttgcatgctt taaatgagat ttataccaca aaagaagtta aaaagatagc
     4921 aaaggattaa aaaagatgac agaaatacaa tttaatgaaa ttaaagaaag attagccgat
     4981 tggagaagtg aaagaagttt aacctatgaa aatcaacaag cagaattttt aggtaatgtt
     5041 tttgaaaaag taagcgagta ttttagagca aaagatgatt tagaaagagt taaagctttg
     5101 tgtgatattg cagtattttg ttttaatgta aatgatgtta agttttctaa ttatgaatgt
     5161 tatatgaagt ctgataaggt tgattttgaa atttttgaca tagcttcaca aataaatagt
     5221 attgctattt ataaggctaa ttttgaaata gactctgtta aagtaatttt agatacttta
     5281 atagcattat tacataaaaa atgtgaaatc ttaaaatttg acttctataa atgtatgcta
     5341 gaaaaaatta aagagattga aagtcgtaca gggttttatg atgagagatt aaagaagttt
     5401 gtagatacaa tatgtgcttt cagcaaagat gaagctctta gcaatgtatc taaagatttt
     5461 gggtttttag gaaattcaat tatttataaa ttaacacaag aagataaaaa cttctggttt
     5521 ataacttgta aagaaataga aactaattta cagatagatt ataaagttaa aaaaatctat
     5581 aaagctgatt ataaaagttg ccggttataa aaatgttaaa tatcatctta gttttacttt
     5641 ttgtattatt tttcattctg atgtttttta actataaata tcaaaaagca caagttgagc
     5701 ttttagaaaa aagaattaag gagttaaaat gggaatttta aaaagacttg atgaaactat
     5761 cattatcgaa aatgatagga aaagcgaaaa agaattagtt gagtattgta ttttagaagg
     5821 gatttcttta aataatgcaa acttggaaaa tataaattta agtgaattag attttaataa
     5881 tgcatttata aatggtgcta gttttaaaaa cgctaattta aatgatattt caagcaagaa
     5941 tgcatctttt atagattgtg atttcagcgg agcaagtttt catttttgta attttctaag
     6001 aacagaattt gaaaattgta tatttgaaaa tgtagatctt agggattgta taggagatat
     6061 gaaaaatatc tttagcgttg tcttggatac ctatgttatg acttttacaa aaactatgat
     6121 gaatttaggt tgtgatacta aaacaataaa agaatggcgt aatttaagcg ttgatgattt
     6181 agaagatgaa gaacagaaat ggctttggag ttattacaag gatactattt ttgaaattat
     6241 agataaaaga ttaggagttg aaaatggtta aaaaatattt tagagaaaaa gaattgagcg
     6301 aatatttggg agttagtgta acttcattat ttaagttaag acaagatggt aaaatacctt
     6361 acattcgcat aggaaaatcc ataagatatg aaataaaaga aatagaaaaa tggcttaaag
     6421 ctaaaagaca ttaaaagcaa aactcacaaa gagaatttaa gtaatttcca taccattgca
     6481 taagttttac tcttaaatca attgccttgg ctctgttgta agccctttct atttcattac
     6541 cacttatatg atgtaatatc atttctgcta tatctttact aataccttgc tgaattaact
     6601 cattgctttt attagtataa acacttctaa aagtagaacg atatccatgt atagtgtgct
     6661 ctaaattata aaatttaaaa aatcttacag caaaattctc gctaatagtt ccattattat
     6721 tagcgaaaat atacttttta tctccattta aaattctttg tatatctagt atctttaaag
     6781 catatttatt taaagggata atattatcac cattagatct tactttcatt tcatctgctt
     6841 ttataatcca aagattgttt tcaaagtcaa tatcactcca tttagcaaat cgaatatttt
     6901 tacttctttg tgctgttaaa agcgtaaaat aaattgcatt aattatagtt gtatttgttc
     6961 gtggatgatt tttatattct ttcatacatt ctaacatatt ttttatttct tgttcttcta
     7021 ctatagcttt aaaatgttta actttattgt gatttgcttc attgtaaaat ttctttaaat
     7081 ctttcaattg aagtattata tctgttttta agtcacctct ttgcctacta atctcaaata
     7141 tcctacatag caaagatata tttttcttta ttgtttcgta tattcctttt ttctgcatta
     7201 aatcataaat aggtagaaaa tcatcttttt tcaattcatt tatatctttt tgtcccaaag
     7261 tgggaataat atatttttta aaaattgact gttctttttt aattgtagct gaatttaatt
     7321 ttttagattt tatatcaaca taaagaaaat ttgctttttc aagtgtcata accttatcat
     7381 ttttgccgat aaattttcca tcatacattg attttaaaag atcttttgct ttttctcttg
     7441 catttgtaac atttaaaaca cctttttggc attcccctat tgttataaaa tttttaaatt
     7501 ttgaagctct taaataaaaa acttttttac ctgttggatt aactcggaca tataattctt
     7561 ttggttctcc tacgctaatc atataccttt tatcttttat ttctaaattg tctatatctt
     7621 tttgagttag cattaaaaaa accttttttt agtatttttg tagccagaat tagctttttt
     7681 actttggcta cataaatggc tacagaatta taagaaaaaa tagaaaaaat ttcaatcata
     7741 atgaaaaatt ttaatgtaga aaagttgtta aaatagtgta ttttgtatct taatattact
     7801 taatgaatta ctacttggtg tccacggcga gattcgaact cacggcctca aaattaggaa
     7861 ttttgcgctc tatcctgctg agctacgagg acagaaagcg ggaaaaatcc cgctaaaaat
     7921 ttaaccgttt ctttttttga tgatttcatc cgcaacattt ttaggaactt catcatagtg
     7981 atcaaattcc atagaataag tcgcacgacc ttgagtttga cttctaagat cagtagaata
     8041 accaaacatt tcagccaaag gacaaaatgc tgtgatgatt ttatttccac cacgctcatc
     8101 catgctattt acttgaccac ggcgtttgtt aagatctcca ataacatcac ccatataatc
     8161 ttcaggagtt tctacttcaa ctttcatcat aggctctaag atcacagcac ctgcttttct
     8221 agcaccttct ttaaagccca tagaagcagc aagtttaaat gccatctcag atgaatccac
     8281 ctcgtgataa cttccatcat aaacagttac tttaacatct tccacaggat aacctgctaa
     8341 aacaccattt tgtaatgctt cttgaacacc tttatcaact gcaggaatgt attcttttgg
     8401 aattacccca cctttgatat cattaacaaa ttcatatcca ctacctggct caagtggttc
     8461 aaggcgtaag aatacatgtc catactgacc acgaccacct gattgtttag cgtatttgta
     8521 ttcttgttca acagtttttc taatagtttc gcgataagca acttgtggtt gacctacttc
     8581 agcttcaact ttaaattcac gaagcattct atcaacgata atttcaaggt gtaactcacc
     8641 catacctgaa atgatagttt gaccactttc ttcatctgta gaaactctaa aacttggatc
     8701 ttcttgtgct aatttattta aagcaataga cattttttct tgatcagctt tagtttttgg
     8761 ctcaactgca acagaaataa ctggatctgg aaaatccatt ctttcaagga ttaccttatc
     8821 tttttcactt gcaagagtat cccctgttaa agtatcttta agtcctacaa cagcaccaat
     8881 ttcgcctgcg taaagcactt taatctcttc tcttttgtta gagtgcattt ttaacaaacg
     8941 accaattctt tcttttttat ctttagttga gttatatgca taagaaccgc tttctaaaca
     9001 accgcgataa acacgcacga aagtaagttg tcctacaaat ggatctgtca tgattttaaa
     9061 tgcaagccct gcaaactcgc catcatcagt tgattttaca gaaacttctg tgccatcttc
     9121 atattcaccc ttgatatttg ccacttcatc aggagctggc aaataagcca caacagcatc
     9181 aagtaaaggt tgaacccctt tatttttaaa cgctgtaccg caaagcatag gaacgataga
     9241 aagacttaaa catcctgctt taatccctgt tttaatctct tcaaggctta attcttctcc
     9301 gcctaaatat ttttccatca actcatctga agtttcagaa actgcttcta tcatttttgt
     9361 gcgatattct tctgcctttt ctttaagttc agctggaatt tctttttcta cataatccgt
     9421 tggcttagta tcatcttccc aaactaaagc tttcatagtt acaagatcga ttacgccttt
     9481 aaaattatcc tcagcaccaa ttggaatttg aagtggaact ggattagctt ttaaacggtt
     9541 gcgaatttga tcttctacat tataaaaatt tgcaccgatt ctatccattt tatttacaaa
     9601 tactattctt ggaacaccgt atttatttgc ttgtctccaa actgtttcac tttgaggctg
     9661 caccccaccc actgaacaaa ataccgcaac agcaccatca agaacacgca tagatctttc
     9721 aacttcaatt gtaaaatcca cgtggcctgg agtgtcaata agattgattt gatgatcttt
     9781 ccaaaaacaa gttgtagccg cagaagtgat agtaatccca cgctctttct cttgttccat
     9841 ccagtccata gttgcagcac catcatgaac ttcaccgatt ttatgactca tacctgtaaa
     9901 gaaaagaatt ctttcagatg tagtcgtttt acccgcatca atgtgagcag caataccgat
     9961 atttctaact ttttttaaag gagtacttct tgacatacac actccttctt accaacgata
    10021 gtgagcaaat gctttatttg cttcagccat tttataagta tcttctttct tcttaaatga
    10081 agcacctttg ctatttgctg catctaaaag ctcagctgca agtttatcaa tcatagttct
    10141 ttcgcttctt tttcttgcaa aagaaataat ccaacgaatc gccaaagctt gttgtctagc
    10201 aggacgaact tcaactggaa cttgataagt tgcaccacct acacgacgag attttacttc
    10261 taataaaggc ttaatatttt caatcgcatc attaaaaata tcaatacctt ttttctcgcc
    10321 acctttttta tcaatagctt ccaaagcacc atacataatt gttgtagctg tgcttttttt
    10381 accatcatac attaaagaat taataaattt tgtgattact ttattaccat aaatcggatc
    10441 aggcaagact tctcttaccg gagcttttct tcttctcatt atttttcctt caaattttaa
    10501 attttactca aacaaaatca aatctaacgg atttgtctgt atgaatgatt attttgcagt
    10561 gcctgcttta gggcgtttag caccatattt agaacgagaa actgttcttt ttgcaacacc
    10621 tgctgtatca agagcaccac gaacgatgtg atatttaacc cctggtaagt cttttaccct
    10681 accaccacgc actaaaacaa tgctgtgttc ttgcaagtta tgaccttcac cgccgatata
    10741 gctgatcact tcaaagccac tagtaagtct tactttggca acttttctta acgctgagtt
    10801 tggtttttta ggtgttgtag tataaaccct agtgcaaact ccccttcttt gtggacaatt
    10861 tttaagcgct ggagatttag atttttctaa aacttttttg cgctcttttc taaccaattg
    10921 atttatggta ggcacaataa ttcctttctt taaaaatgta ataaactttg gatgatatct
    10981 aaattttgct tatattttag ttaaaaagat tgaaaatgaa gaaatatagc ccagaagggc
    11041 tataaaatag agttttattc ttgttcttta agttttaaat tttgttcacc ataaagccct
    11101 gttccaacag gtatcattct acctagaata acattttctt ttaaatcttc taagtagtca
    11161 aatttacccg ctatacttgc ttcggttaga actttagtag tttcttggaa tgaagctgca
    11221 gaaatcacac tatcgcttcc aatcgctgct cttgttacac ctaaaagcac aggctcagca
    11281 atagcaggtt ctccacccat tctaatgatt ctttcgtttt cttcacggaa tttacgtctt
    11341 gaaaccaaat caccctcgat aaatttcgta tgtccactat ctacaacttt tacttgtctt
    11401 agcatttgag aaacgataac ttctatatgt ttatcagaaa tcacaacacc ttgtccgcga
    11461 taaacttgtt gaatttcaga aatcaaataa taatgcaagg ctttttcacc caaaatttta
    11521 agcacatcat gacttgaaac aactccatct gtaagttttt cacctgcatg gataaactcg
    11581 ccatctctta cttgaatatg ttttgattta tcgattaaat actcagcgct tgttccatct
    11641 tctgcttgga taatgattct ttctttagaa cgcaaaggtt tatcaaaacg aacaacacca
    11701 tcaatttctg caatcacagc cgcatttttt ggttttcttg cttcaaaaag ttcagaaact
    11761 cttggaagac ctcctgtaat atcttttgat ttagctgcag cttttggagt ttttgctaaa
    11821 atatctgctt gagcgatttt atcaccatca tgaacaaaaa taacggtttt tggttcaagc
    11881 tgataacgca cagccttatc accttttcct gcgattacca aagttggtct aactccgctt
    11941 ggcaaatact cattaatcac taaagaacgc ttacctgtag cttcatcaat ttgctcatca
    12001 gcactataac ctgcttcaat atcctcaaag cttacaacac catcaatttc tgcaatgata
    12061 gtattattat aagcatccca ttctgcaatc acttttcttt cttttttagg agcacttgca
    12121 atgatagtat ttgcatcatc gattttttca ctatcgttaa attctatctt agattctctt
    12181 ggaatatagt gtctttttgc ttctctatca ttttcatcag caatcactac aaagaatcct
    12241 ttttctttaa caatatcgcc ttttttaaca ttttttaccc tatctaaacc atcgccttta
    12301 aggatataaa atttaagcgt tcctttttcg cctgctttga tattttgaac tacaggctca
    12361 ccatcttcta ctaaaatttc actcgcaaaa gggatacgat ttggtacatt ccaaccctct
    12421 ttaatcactt ctacgatact ttcattttct tctacttgca taccactttg atatggcaaa
    12481 taaagttttc catctatact gccacttaca cctgctaatt catttggttt agcaagatcg
    12541 tattttctta gtatgtattt tacttcttgt tttttatttt taatagaaac aatcacatct
    12601 tcatgaatat tttctatatt aatcacacct ttaaatggag ttttgatttt tggctccaca
    12661 agtaaaattg ccgcatttct acgatttgct acgatatttt taccttcttt atttttataa
    12721 gttttaagat tataaaatct gataaaacct tctttttgtg cgcttacttg tctatcttgt
    12781 aaatccgtac ttgcagttcc cccactgtgg aaagttctta gagttagctg cgttcctggt
    12841 tcaccgatag attgagcgga aataattcct actgcttcgc ctggttttac caatttacct
    12901 tcaccaagat tgataccata acattttgca caaattcctt ttttagcttt gcaggtaata
    12961 ggagtgcgga tattgacact ttttataccg ctttctccaa gaatttttgc tttttcctca
    13021 tccattaaag taccttctgc aaaaagcaca gaatttgtaa taggatcaat cacatcttca
    13081 gctaaaaccc tgcctaaaat tctttcttct aaagtttcta taatagagct atctgcggta
    13141 atttcattga tttcaacacc ctcatgcgtt ccacaatctt caatggtaat ttttacattt
    13201 tgcgcaacat cgatgagttt tcttgtcaaa taacccgcat ttgctgtttt aagagcggta
    13261 tctgctagac cttttctagc accgtgagtt gaaataaagt attcaagaac attcaaccct
    13321 tcacggaaat tcgaaataat aggagtttcg ataatagaac catcaggttt agtcataagt
    13381 cctctcatcg cagcaagctg agaaatttga gccgcactac ccctagcacc agaatctgcc
    13441 atcatataaa tagagttaaa accttcttta tctttttcta caagcttcat catctctttt
    13501 gaaaggacat tatttgtact cttccaaata tcgatgattt tgttgtatct ttcccctgaa
    13561 gtaatcaaac caagattata agaattttga atttctctta cttgtttttt tgcttcatct
    13621 atagcttttt gcttgtcatt aggaacaata atatctgcaa ttgaaattga aatacctgct
    13681 ttagttgcat actcaaaacc taaatttttg agtctatcta agaaacttgc tgtaatctcc
    13741 aaaccacctt gtttataaac ataatccaca agcgcggcaa tgtctttttt ctttaagact
    13801 ttattccagc tattttcagg cacaaaatca ggtaaaatgg atttaataat caatcttcct
    13861 gctgtagtgg taatctttct accatctacc atggtttgta tactcgcatg aatatctaaa
    13921 cacttacttt caagtgccat catcacttca tcaatgcctg tacaaatttt atgcgaacct
    13981 ttagcacctg ctttttctaa tgaaagataa taaattccta aaaccatatc ttgcgatgga
    14041 acggttacag acttaccgct tgctggcaaa agaatattca ttgatgaaag cataagcact
    14101 ttacattctg caatagcctc ttgagaaagc ggtacatgca ctgccatttg atccccatca
    14161 aagtctgcat taaatgctgc acaaactaaa ggatgaagtt gtatagcctt accttccacc
    14221 aaaacaggat gaaaagcttg aatagaaagt ttatgtaaag taggtgcacg gtttagcata
    14281 acaggatgcc cttttaccac ttcttctaaa cattcccaaa cttcattagt tttattttct
    14341 atcatttttt tagcttgttt tactgtggtt gcataacctt tttcttcaag tttagctaaa
    14401 agatgtggtt taaaaagttc taaagccatt tttttaggca aaccacattg atccattcta
    14461 agttttggac ccacaacaat aacgctacga cctgagaaat ccaccctctt acctaataag
    14521 ttttgtctga aacgtccctg tttaccttta ataatttcac ttaaagattt caatgggcgt
    14581 ttatttgctc cctttacagc attagcacga cgaccgttgt caaaaagtgc atcaacagcc
    14641 tcttgaagca ttcttttttc atttcttata atgatttccg gtgcatcaag ttccataagt
    14701 tttttaagac gtgtatttct attgataacg cgacgatata agtcattcac atcagaaact
    14761 gcaaattttc caccatctaa agccactaaa ggacgcaaat ctggcggtaa aactggaaga
    14821 tttgtaatca tcatccattc aggacgattt ggtacggctt catcgctatc ggcattggcg
    14881 tttaaatttg aatttaagaa attttctaca acttttaagc gtttaatgat agtttttttc
    14941 ttagcctctg aatttgtagc cgccatttct tctttaagct gatttaaaag tgctacaaga
    15001 tctaaatttg caagtaaatc acgaacaact tctccaccca ttcttgcttt aaagccacta
    15061 ttttcatagc gttgcattaa attttgatat tgctcttcgt ttaaaacatc acaatattct
    15121 acttttttgg tgctttcatt atcatagaaa gcatcacctg ggttttcaac gatataagct
    15181 tcataataaa gcacacgctc aagatctttc atcttaacac ccaaaagcgt tcctatacga
    15241 cttggaagag aattaacata ccaaatatga gccacaggag ttacaagctc gatatgtccc
    15301 attctagaac gacgcacttt tgaatttgct acttcaacgc cacatttttc gcacttaaca
    15361 cctttaaaac gcattttttt atacttgcca caaagacatt cataatctct tataggtcca
    15421 aaaatctttg cacaaaaaag cccatctctt tcaggcttta aggttctata attgatagtt
    15481 tctggttttt ttacttctcc ataagaccat gatttgattt tttcaggact tgcaagtctt
    15541 agttgaaacg cttcgaaatc cctaggtctt gcatcttctt tgatttctat tactttaaat
    15601 ttactcatta tcttcatcct tatcaaaaat ctcaacatct aaagcaagag atttaagctc
    15661 attggttaat acaaaaaatg tttcaggaat tcctgttgct ggaacatttt caccttttgt
    15721 caatgcttta taagcactaa atctaccttc tacatcatct gatttgatag ttaacatttc
    15781 tcttaaagta tgagccgctc cataagcttc aagtgcccaa acttccatct ccccaaatct
    15841 ttgtccccca aagagtgctt taccacccac aggttgttgg gtaactaagc tgtaaggtcc
    15901 tgtacttctt gcatgaactt tctcatcaac taagtggtgg agttttagca tatacataca
    15961 tcccacatga acacgctctg cgattttctc acccgtgcgt ccatcataaa gttctgtttt
    16021 gccgtccata tctatcttgg ccatttcaaa aagcttgcta aattcttcta tatttacacc
    16081 ttcaaaaaca ggagtagcaa atttaactcc tttactccag tctctagcat agtttaaaag
    16141 ctcttcatcg cttaagcttt taataaattc tttttcgctt gcaagtcttg gaatagaaca
    16201 aatttcaagc atttttgctc ttaattcttt aagaaaatct ttttgctttc tgtcaaaaat
    16261 ttcttgaatc tgatctccga gtctaagtcc aattaaaccc aaatggcttt ctaaaatttg
    16321 gcctatattc atacgacttg gaacgccaag tggattaagc gcaatatcca cgcttttgcc
    16381 atttggtaaa taaggcatat ccacttcagg aactatagtt gaaactatac ctttgtttcc
    16441 gtggcgtcct gccattttat caccgacttt aagctttctc tttgtagcaa tataaacttt
    16501 aacaagctta attaccccac ttggtaaaat atcatctttt tctaaaattt caagcttttc
    16561 atcgtgttct gcttttaatt ttttcttctc attttggaaa tgatttttta aatcatcgta
    16621 ttctttttga atctctttag aataagcttt aatcaaagtt gttaaagtaa aacgattgat
    16681 tttttcaagt tcgctaatat ctgcagtttg tcctttttta taatttttat ctccaatttt
    16741 ttgatcacta tttaaagggg ctttggaaag aagagcgcaa acacgaagca tttcttctct
    16801 atccatcatc aaaagtctat catgatgttc tttttctaaa gccatttttt ctttatcata
    16861 agattttatt gcgcgatcat ctttttcata gcctttttta gtgaaaattt taacatccac
    16921 aacaacaccc tctaaagaag cggttgcata aagggattta ttcacaacat gtcctgcttt
    16981 ttctccaaaa atagctctta aaagtctttc ttcaggagtt ggtttaacct caccttttgg
    17041 agaaacctta cccaccaaaa tcatacctgg tttgatatga gtaccaattt ttgcaatacc
    17101 gctctcatca agatgtgcaa catcttcttc ttttacattt gggatatctt tggtaatttc
    17161 ttctataccg tcttttagtt ctcttgcttc aatttctttt tcataaatgt gcacgcttgt
    17221 aaaggtatct tcacgaataa ttctctcact tacaactata gcatcctcat agttataacc
    17281 attccaaggc ataaaagcga ttaaagcatt tttacctata gcaagttcgc cttgatccat
    17341 agaaggacca tctgcgataa tttgtcctgc ttttactata tcaccttttt taacaatagg
    17401 atgttgaata taatttgtat tttgattggt tcttaaattt ttctccatag tataatggtc
    17461 aataaatgga cctttatcat cttcacctaa aatgaaaatg cttttattat ccactttctc
    17521 aaccacaccg ccacgctttg ctttaacagc ttcccaagca tcacgtgcaa taatttgttc
    17581 catgcctgtt cctactatcg gagctgaagc agtaagaagt ggcacagctt gacgttgcat
    17641 gtttgaaccc attagcgctc tgtttgcatc atcgtgctct aaaaacggaa tcaaagaagc
    17701 cgcaacccca acaaccatac ctgagcaaag atcaattaat tgcacttctt cgcgtcttgc
    17761 aagtatagtt tcaccatctt gtctagcctc aacaaattct tctactatat tgcctttagc
    17821 atcaacctta gttgaagctg gtgcgataaa caagccttct tcttgtgtcg ctgtaagata
    17881 aacaacttca ttagtcactt taccatttac aacttttcta tatggcgctt caacaaagcc
    17941 aagttcattt acttttgcat aagtagaaag agtgttaatc aaaccaatat tttgaccttc
    18001 aggtgtttca actggacaaa ttctaccata atgtgtcgcg tgaacatcac gcacttcaaa
    18061 acctgctctt tcttttacaa gtccaccttc accaagcgct gataaacgac gcttatgagt
    18121 aacctcgctt aaagggttgg tttgatccat aaattgcgaa agctgacctc ctgtaaaaaa
    18181 ttcaatgata gttgtagtaa tcattttagg attgattaaa tcataaggca ttactttatc
    18241 aagatccgca tttaaagaag taaatttatc tctgatcgcc ttttgcattt ttgcaagacc
    18301 taaatgaagt tcattggcca aaagttcacc tatagaacgg atacgacgat ttcctaaatg
    18361 atctctatca tcaatatgtc ctttaccatt ttttacttta attaaatatt ttgcagtttt
    18421 aataatatct tcattagtca aaacagtaac atactcaggt acttcaagac ctaatttatg
    18481 gttcattttc atacgaccta ccttggtaag atcgtatctt tcaggattga agaataaatc
    18541 atttacaaaa gccttcgctg catcttttac cacaggttca cctgggcgca taactttgta
    18601 aattctaatc gcagctaaat cattttcatc atcgatattt tcactttgtt taagaagttt
    18661 tagagtttct ccatcttgag caaaggagtt aataatcgct gcatcaacgc cattagccaa
    18721 gtcatttgct atatcaaaac ttttttgctc tttaatctta gcaagcttac tctcatctaa
    18781 caaagttaaa gaatcaaata aaacctctcc actttcttta tcaataatag gatttgctaa
    18841 ataacgatta agtaaaattt ctacaggata ttctatccat tttaaaccgt ctttaataag
    18901 ctgttctgct tttttctttg taagtctttt tccagcttga tgaacgattt ttcctttttc
    18961 atctttaata tcatattcta ttctatccat aaaatcattt ggattaaatt ctgttaaaaa
    19021 tttatctttt ttcacatgta tagtctgaat aggataaaac aacttaataa tatcttgttt
    19081 tttataccct aaagctctaa aaagcatagt tacaggaact tttctacgct tgttgattct
    19141 tacatacaaa acatctttgg catcgtattc aaaataaagc cacgaaccac gatcaggaat
    19201 aatttgtgct gtataaacaa gcttatttgc aaccgttgag ctttcttctt ctttaaaaat
    19261 aacaccaggg cttctatgta attgatttac aaccaccctc tcaaccccat taatgataaa
    19321 agatacacga tctgtcatta aaggaatttc gcggatataa atttcttgtt ctttaatatc
    19381 ttttacgcca actttttccc ctgttttttc atctttttca tgcagagtaa gacggatttt
    19441 catttttaaa tttacagaat aagtcaaacc tctttccatg cattcgcgaa tggtatattt
    19501 tggcttgcct atttcactac taacatattc aagactcaat ctattttgcg gatcatgaat
    19561 aggaaaaatt gatttaaaaa ctttttctat accactttca ccattatcaa gatttaaaaa
    19621 ataatcaaaa ctcttttttt gtaattgtag aagatttggg atttctattt gttttgaaat
    19681 gtttgagaag tctactctta aacgatttcc taatttatta tctaacatat cgcacatacc
    19741 tcatggtaaa ttttgtaaat ttaaaaaaga agacctaaaa attaggtaaa aataaaaaaa
    19801 gaagacttgc cttgacaaat cttcttctaa ctttaaagct taaaattact taagttctac
    19861 tttagcacca gcttcttcaa gttgtttttt agcttcctca gcttcagctt tagccacacc
    19921 ctcttttaga gttgaaggag tttgctcaac tgcatctttt gcttctttaa gaccaaggcc
    19981 tgtaagagca cgaacgattt taataacttc aatcttttta gcaccgccat cagttaaaac
    20041 gatatcaaat tcagtttttt cttcagcagc agctgcagca ccaccagctg cagcaccacc
    20101 agctaccatt acaggggcag cagacacacc aaatttttct tcaaattctt ttacaagttc
    20161 tgataactca agaacactta aatttgaaat atattctaat acatcttctt tagaaattgc
    20221 cattttttat ccttttattt aatttattca gattcttttt tatttttaag cgcatttaaa
    20281 cctattgtga aattggtaat tggcgcattc caaacttgca aaagcatagc aagcaactca
    20341 ttgcgtgaag gcattttagc aagagcttta accttagcaa catctgcaac ttcgccttca
    20401 atataagctg ttttgatttc aaatttatcg ttattttctt caaatttagc agctactttt
    20461 gaaacactta gctgatcttc gccccaaaga taaatatttg tatctttaag aactagacct
    20521 gttttaccgg aattgttaag agcaatgtta gccaaagtat ttttaacaat ttgaactttt
    20581 acattgtttt ctcttgcatt atttctaagc tcttctagtt tttttgtgct aagacctctg
    20641 taattacaaa ctacaatagc ttcactagct ttaaaacctt cttcaagttt agcaataatc
    20701 tcaacttttt cgcttctagt cacattttct cctttccgat tgagatttca agtagagtgg
    20761 aaatccaatt aagcttacgc ctcgactatc ttcaatctaa aataaacatc tcaaaaaatc
    20821 aaaaattttt tcaaatgttt attttagaac aaaagagttg caaaaaagca actcttattt
    20881 catatcaagc aattcttgtg tttcaagctt tacagaaggg ctcattgtta aagataaagc
    20941 cgcattttta atatatctac ctttagctgc ggcaggttta tgtttgttaa ttgcctttac
    21001 aaaagtgcta acattgtccc ataattgttc tttggaaaaa cttactttac caagacctgc
    21061 atggatattt ccttgcttat caacacggaa atttacctga ccactttttg cattattaac
    21121 tgcttgagca acatccatag tcactgttcc ggttttagga tttggcatta aaccttttgg
    21181 gcctaaaatt ctaccaactt taccaacaag tcccattaaa tttggagtag caatcaaaac
    21241 atcaaaattc atattacctt tttgaatttc ttctactaaa tcatcgctac ccacaatatc
    21301 tgcaccagca tttttcgctt catcagcttt tgcgtctttt gcaattacag caacacgaac
    21361 ttttttaccc gttccagcag gtaaaacgac agatcctctt accatttgat ctgcatgtct
    21421 tggatcaaca ttaagtttta aagcaatttc tacagtctca tcaaatttag cagactttaa
    21481 agtctttatt gtatcaattg catcgcttaa agcatactct ttatttgaat caattttttg
    21541 tgataattct tttaatcttt ttgctatctt agccatttat tttctccgca ttttaaagtg
    21601 ctaccgcctt ttaccttggc ggtgaaagga ttaatctacg atttcaacac ccatagaacg
    21661 agctgaacct gcaataattt tagcagcttg atctctatct ttagtattta aatctgcaat
    21721 tttcttatct actatttcta aaacttgagc acgagttaac ttacccacct tatttttaag
    21781 tggattatcc gtacctttag aaattccagc tgcttttttg atcaaatccg tagctggcgg
    21841 ttgttttgta ataaaagtaa aacttttatc tgcataaaca gtgataacaa cagggatatt
    21901 aaaacctgcc atatcttttg ttctttcatt aaaagcctta caaaactcca taatattaac
    21961 accttgctga cccaaagcag gaccaacagg tggtgatggg tttgcttttg tggcagcaat
    22021 ttgcaattta atttcgccta cgactttttt agccataaca aatctcctta cttgatataa
    22081 attaaattat tttctcaact tgagaatata agatctccac tggagttgag cgtccaaaaa
    22141 tagaaacatt taattttaat aaaccacgaa ccatatcata ctcttctaca attgcagtaa
    22201 agtttgcaaa tggcccttct gtgattctca cattttcccc ttcttcaaaa gaaatctttg
    22261 gtttaggcgc tgcacgattg tgaacttttt ccaaaatcaa attaatatct ttttctgtta
    22321 aaggggttgg ctttttggat tctccaataa aacgaccaac ctttggaaga gattgaatgc
    22381 gatgccaaag ctctgtattt aaatcaagaa gtgcaaaaac gtatcctgaa tacaaacttc
    22441 tttcgctaat cttctccttt ccattcttaa attcaataac atcttcagtt ggaacaacaa
    22501 tttctttaag ttgttcttca attccgttat cttttactaa attttcaatg gctcttttaa
    22561 ctgccatttc actgccagca taagtttgaa ttgcatacca tttatgagta ctcatttact
    22621 ctccttatac gatcgcagaa acaatagagg acataagcca atccactaac gccaaaaaca
    22681 aagaaatcac cgcaacaacc acaaaaactg taatataggc atttcttacc tgttctttta
    22741 aaggaaaaat tactttcctt aattcggctt ttgataattt aaaataagtt attaattttt
    22801 ccatttattt aaaccttaat tatggcaggg caagagggat tcgaaccccc aaccatcgga
    22861 tttggaatcc ggcgctctac cgttggagct attgccctaa gggcgcaagc ttaacttttt
    22921 agcttaactt ctttgtgaag tgtatgtttt tttaatcttg ggcaatattt ttttaattct
    22981 aatttttcag tagtattttt actattttta taggtgctat aattaatatc accacattct
    23041 tcacacttta aaccaacttt aattctcatt tcaattttcc ttaaaaaatt aaagccaagc
    23101 ttttaacttg gctttattaa attatttaat aattttagaa acaacacctg aaccaacagt
    23161 tttaccacct tcacgaatag caaaacgagt tccttcttca agtgctactg gagcgatcaa
    23221 gcttacagta attctcacat tttcacctgg cataaccatt tcaacaccat cagctaattt
    23281 aatcgaacct gtaacatcag ttgttcttac ataaaactgt ggtctatagt tgttaaagaa
    23341 tggagtatgt ctaccacctt catctttatt taagatataa acttcagctt cgaagtcagt
    23401 gtgtggagta attgattttg gtttagcaag aaccatacca cggataactt cttccttttt
    23461 agtaccacga agaagaacac ctacgttatc tcctgcttcg ccttgatcca tttcttttct
    23521 gaacatttca acacctgtta cagttgttgt ttgagtatct ttaataccaa cgatttcgat
    23581 agtatcacct acttttacaa cacctttttc aattctacct gtaacaacag taccacgacc
    23641 tgaaattgag aaaacgtctt ctattggcat taagaagtct ttttcagtat cacgagttgg
    23701 agttggaata tagctatcaa ctgcagccat aagatccata atttttgctg accattcacc
    23761 atcttgtcca gctttagctt cttcaagagc ttttaaagca gaaccagaaa taataggtgt
    23821 atcatcgcct gggaaatcat aagagcttaa taattctcta atttccattt caactaactc
    23881 tagaagttca gcatcatcaa ccatatctgc tttattcata aaaacaacaa tatatggaac
    23941 gcctacttga cgagaaagaa gaatgtgttc tctagtttgt ggcataggac catctgcagc
    24001 agaaacaacc aagatcgctc catccatttg tgcagcacct gtaatcatgt ttttaacata
    24061 atctgcgtga cctgggcagt caacgtgtgc atagtgacga ttgtctgttt catattcaat
    24121 atgagaagta gcaatagtaa taccacgctc tttttcttct ggagcattat cgatattatc
    24181 ataatcttta agctctgcta aacctcttct agaaagaaca gcagaaatag cagctgttaa
    24241 agtagtttta ccatggtcaa cgtgaccaat agtaccaata tttacgtgtg gcttattacg
    24301 tgaaaatttt tctttagcca tttttttcct ccgtataaaa aataaattga gcaaagcaag
    24361 tcttatatct atataatttt ttcaattcat ggagctcata gcgggaattg aacccgcgac
    24421 ctctccctta ccaagggagt gctctacctc tgagccatac gagcgctcag aaaaattata
    24481 cataataata gacaacaaaa actcttaaat gggatatata ctgtaagtta aaggttttaa
    24541 aatacagctc ccagttcttt taaattgttg gagcgggaaa cgggactcga acccgcgacc
    24601 ctcagcttgg aaggctgatg ctctagccaa ctgagctact cccgcaaagc atggtggtga
    24661 gtcgtggatt cgaaccacgg aaggcgaaag ccagcagatt tacagtctgc cctcgttggc
    24721 cacttgagta actcaccata aaaatattgc tttttcaata ttctggtcaa acactgctaa
    24781 aataaatgga gctggttaag ggacttgaac ccccgacctg ctgcttacaa ggcagctgct
    24841 ctaccaactg agctaaacca gcaaaaataa aagtaagatt ataactcaaa aaaaaatttt
    24901 tgtcaagact tttttagttt ttctataaaa ttttagtctt gtaaagttta ttatcataaa
    24961 ccgatattat ttttatctat ttatgataat caaacaaatt taaaaatttc tttgctcttt
    25021 cgctttttgg attttcaaaa aaacttttag gatcattttc ttcgatgatt tttccttcat
    25081 ccataaaaat aattttatct gctacagctt tagcaaaacc catttcatga gtaacaataa
    25141 gcatagtcat accctctttt gcaagattta gcattacctc taaaacttct ctaacaatct
    25201 caggatccaa cgctgctgta acctcatcaa aaagcattaa ctcaggattc atacatagac
    25261 ttcttactat ggcaattctt tgcttttgtc ctccgctaag ttctcttgga taagcatgaa
    25321 ttttatgcaa aagccccacc ttttcaagcc aaattttagc ctcttttaaa acctcatctt
    25381 tctttctttt ttgcactttc ataggcccta aaagtatatt ttcttcaaca cttaaatgct
    25441 caaaaagctc ataagattga aaaaccatac caactttttg acgcattctt ggccattctt
    25501 taaaatcttt atctattttc tcattatcaa tataaatatt accacttgca atctcttcaa
    25561 gcccattaat acaacgcaaa agcgtagatt ttccacatcc gctaggacct aaaatcacca
    25621 caacttcttt agccttaact tctaaattaa tatcttttaa ggcgtgatgc gaaccataat
    25681 acttttgtaa attttctatt tttagtatgc tcattttagc tccatttttt ctctaatttt
    25741 cttgaatata aagtgatagg ataacaaagt ataaaaaaga taaaaaaaat caaaccataa
    25801 ataataaaag gtgcaaaatc atttctatta tgaaattcta taatttgttg ccctactttt
    25861 acaagctcta ccgcgccgat taaataagca aaggttgtac ttttaatcat acgagtaagt
    25921 aaattcatgc tcataggagt taaacgacgc atagcttgtg gaataataat ataaacaaaa
    25981 ctttgcaccg tatttaaacc taaagatgat gcactttcat actgatgttt tggaatactc
    26041 tgcaaggaaa cacgcaccaa atccatcatc tcaaaacaac cccaaatgct aaaaacaata
    26101 atagctgcac ttacagaact caaatcccac ccaaaccatc taggaaaacc aaaatacacc
    26161 acaaaaagcc atactaaaag tggcataaca cgcacaaatt ctaaacccaa acgacaaaaa
    26221 gcatagatat aggtattttt aaaactcatt aaaattccta aaaataaccc acctatcgaa
    26281 gtaataataa tgctgataaa tgaaatttca agagtgacaa aaagcccttg ccagagtctt
    26341 aaaagcgtat cggtatttaa aagttcaagc atgaagcaac cttttttcaa actttagcaa
    26401 aataaaagac aaaggtaaga taatacacaa atatcccata aacaacaaaa acaatagctc
    26461 atctgtctta taggttaagg aatttaaact cttcattaaa ttcaccaaat ctggcaaggc
    26521 aataatacta acgactgaag tttctttgat taaaaatata atattagcac taatacttgg
    26581 catagaaata gccaaagctt gcggcaaaat cacataacgc aaatttccaa attttgaaaa
    26641 acccaaagaa agtcccgctt caaactgctg ttttcttatg gcttcaaatc ccgctcttaa
    26701 actttcagcc atataagaac ctcctaaaaa actaagtcct actatagcac aagcaaaaga
    26761 aggccttaaa gtttcttcta cgcttaagca aatcaaatca agcggtggaa tttgctctaa
    26821 atgtatatta aatttaggta aagcataata taagaaaaaa agttgaatta ataaaggcgt
    26881 atttcttgaa aactctatat aaagcttgca aatattttct aaaattttta ttttaaaata
    26941 actcattaaa atgcaaaaca agcctattat caaagaaaaa ataattccaa aaaagcttag
    27001 ttttatcgta agccaagcag ccgttaaaaa agcaggagct tgaactaata taaaatcaaa
    27061 atccattctc taccttaaat ttttaccaaa gttctttcat gatcatatct ttatttaaaa
    27121 tttcaattct accttttttt gtatcaataa gttctgaaat tttaagttct tttaacactc
    27181 gagataaaga ttgtgctcta acatttaaat caattgcaat ttgtttttgt gaaattgtat
    27241 ctaaattttt ttcattttcc aaaagatact ttaataatct cgtccttaaa tctaatgcat
    27301 tttgagataa tttcttttct aaaattttaa ttttatcaaa aagtga
//
LOCUS       DAZAND010000008        26182 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.008, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000008 DAZAND010000000
VERSION     DAZAND010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26182
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.008"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            117..890
                     /locus_tag="ACHDOB_000285"
     CDS             117..890
                     /locus_tag="ACHDOB_000285"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFN3325236.1"
                     /translation="MKQGDFTEVAKHYHNRPAYSPFLLEKLVACINDKNKNLKDLNIV
                     EVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSNISWHKGSGEETCMSN
                     NQADWVIMASSFHWTDPKKSLPEFNRILTGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IVPELARVSSGTQNVKKWEEILVSTGDFTDCFFMECDYKEFWDKERYLGAWHSVNDIQ
                     AQAGEKRWKEILEMIEAKISHMQSIEIPYKIRAWTARKA"
     gene            943..1704
                     /locus_tag="ACHDOB_000286"
     CDS             943..1704
                     /locus_tag="ACHDOB_000286"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFN3325237.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKGEKVDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLEAD
                     EGNELFNKISDKISQRLPKEFSIKYTTRCWSAKKI"
     gene            1719..4058
                     /locus_tag="ACHDOB_000287"
     CDS             1719..4058
                     /locus_tag="ACHDOB_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-utilizing enzyme"
                     /protein_id="HFN3325238.1"
                     /translation="MAELKFKTKAQNLKNLQTKLKKAKVLSLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYYH
                     YRDYLEFKDIRLQKIIELIKELEVLYNCCFLDVEFAFAIQDDEEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFNIVYSCYDFNSSKKLEELLNHGFNENEIKRLEFSL
                     LELTNKIINPRSGLYLKDIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFL
                     KDFGHLRAGTYNILSPRYDEDFELYFDVDQKDSKVYLQDKAFVFSEEKTKALNALLRE
                     HGLEINACEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYGIEKEDLAHLDI
                     KSILNLYSSLYSINPKEQFVEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIP
                     NFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            4049..4651
                     /locus_tag="ACHDOB_000288"
     CDS             4049..4651
                     /locus_tag="ACHDOB_000288"
                     /EC_number="3.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA];
                     GO_process: GO:0045227 - capsule polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-CDP-amidate hydrolase"
                     /protein_id="HFN3325239.1"
                     /translation="MFIGITQRLIYNESYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSHYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLKEKIPLLGICR
                     GAQMIAHYFNSHISPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAKDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILKEWFSLIKE"
     gene            4653..5411
                     /locus_tag="ACHDOB_000289"
     CDS             4653..5411
                     /locus_tag="ACHDOB_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HFN3325240.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFILKCIEEKQ
                     DLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWNKRFANPLEDAETLKMTNGY
                     IIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLKINFI"
     gene            complement(5404..7257)
                     /locus_tag="ACHDOB_000290"
     CDS             complement(5404..7257)
                     /locus_tag="ACHDOB_000290"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HFN3325241.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKTKKN
                     LKAIVLKECQKPDFKTVEIKEITKYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECQKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMKKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNVLKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKDFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IEDYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKNAQKLCEKLAYQFKNIKQVELV
                     GYGICGVEMLHGKYRFYLLLRSENYKALVAIENYILQFKNVSADIDPIDFI"
     gene            complement(7239..7676)
                     /locus_tag="ACHDOB_000291"
     CDS             complement(7239..7676)
                     /locus_tag="ACHDOB_000291"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HFN3325242.1"
                     /translation="MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            complement(7673..7915)
                     /locus_tag="ACHDOB_000292"
     CDS             complement(7673..7915)
                     /locus_tag="ACHDOB_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325243.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            complement(7905..8135)
                     /locus_tag="ACHDOB_000293"
     CDS             complement(7905..8135)
                     /locus_tag="ACHDOB_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325244.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            8289..10262
                     /gene="uvrB"
                     /locus_tag="ACHDOB_000294"
     CDS             8289..10262
                     /gene="uvrB"
                     /locus_tag="ACHDOB_000294"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HFN3325245.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSTTASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKDRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            complement(10257..12188)
                     /locus_tag="ACHDOB_000295"
     CDS             complement(10257..12188)
                     /locus_tag="ACHDOB_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HFN3325246.1"
                     /translation="MQRQSPEQILKKLEVKAKEEEKNKLAKLKIFLGYAAGSGKTYAM
                     LSEARTLRDNGVDVVLGYIEPHDRPETMALTQGFESIANLEIPYKNIVLKEFDLDATL
                     KRKPALVLVDELAHTNAKGLRNEKRFQDIEELLKAGIDVYTTLNIQHLESLNDLVANI
                     SKIEVKERIPDRIFDEADQVELVDIEPNKLLKRMQDGKIYKEKQAKLALENFFRQERL
                     IALREIALRRLASRVNLRASEQRLINDDLAYHTGEHILVCINASNAKVIRAAARLALA
                     FHAKLSALYIKNPNIKEEKALEENIELAKSFDAEIISVYDDDIARQIAEYSSLSNVSK
                     IVLGKNKDKKKFKEEIFEAVAKKAPNIDLYLVNENQISTPKIRSKKGFDFLGFLKITG
                     VLLLATFIAFVFHKFNTQPSNIVMIFILAVFASSFISDNKIFAFYSSLVSVLIYNFFF
                     LEPIFSLKVHDSGNIITFTTMFIVGFLTAVFTRRLKLQSKELTKRAYRTAILLENSEK
                     LARVKSKQELWEQLGNQALKLLNLPIIIYPINKNNILSKPLLFFNDDKQMLKNCFSAD
                     EIAIAQWVATNKERAGVCTNTLPNANAMYLPIEDGEKTKGVIGIVLKEKRPLQDFQYE
                     ILSALLNEAGVRTRDIFLL"
     gene            complement(12191..12799)
                     /gene="kdpC"
                     /locus_tag="ACHDOB_000296"
     CDS             complement(12191..12799)
                     /gene="kdpC"
                     /locus_tag="ACHDOB_000296"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HFN3325247.1"
                     /translation="MLRTLLSFFVVMLILCTLIYPFALNTVAKFIFPYQSSGSLVDKE
                     GRPTLDISKAVGSKLLGQDFNKPYFLHSRASVSNYNTSDTNESSVSSGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGLDPHISLQAALVQIPRISQSSKI
                     TKEELEKIIQENTESKFLGIFGEEKVNVLAVNIAIAKAMKKE"
     gene            complement(12801..14846)
                     /gene="kdpB"
                     /locus_tag="ACHDOB_000297"
     CDS             complement(12801..14846)
                     /gene="kdpB"
                     /locus_tag="ACHDOB_000297"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HFN3325248.1"
                     /translation="MSKKQNKLITKEILNNAIKGAFLKFDPRFMVKNPVMFMVEVGLI
                     LTLILSIFPTLFNGNSDERIYNILITFILFITLLFANFAESIAEGRGKAQAATLRQSK
                     KDSKARRIKSDGSEEMLNSSELKIGDIVLVKAGELIPNDGEIIEGAASVDESAITGES
                     APVMREAGGDFSSVTGGTTVLTDFLKIKILVGAGESFLDKMINLVEGAARQKTPNEIA
                     LNTLLIVLSLSFLVVVVSLYLFMQFLGVSLPISWLVALLVCLIPTTIGGLLSAIGIAG
                     MDRVTRFNVIALSGKAVESCGDVDTMILDKTGTITFGNRLANEFYEVQGISKEEMIKA
                     CVLSSLKDETPEGKSIVALAQKMGYELEGNDIKEFIEFSAQNRMSGVDLQDNTKIRKG
                     AFDAIRAYISEMNGKIPSDLETKVMEISNLGGTPLVVCKNEKILGVIYLKDTVKPGLK
                     ERFDELRKMGIKTLMCTGDNPLTAATIAKEAGLDGFIAECKPEDKIEAIKKEQAQGKI
                     VAMTGDGTNDAPALAQADVGIAMNSGTQAAKEAANMIDLDSNPTKILEVVEIGKGLLI
                     TRGSLTTFSMANDIAKYFTILPAMFSVVLPQMQILNIMHLATPQSAILSALIFNAIII
                     PLLIPIAMRGVKFKPMKSEHLLLRNLSIYGLGGMIAPFIGIKIIDIPTAWILRILGV"
     gene            complement(14856..16547)
                     /gene="kdpA"
                     /locus_tag="ACHDOB_000298"
     CDS             complement(14856..16547)
                     /gene="kdpA"
                     /locus_tag="ACHDOB_000298"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HFN3325249.1"
                     /translation="MLEILITLIIAFILALIFGNYLYKIASCKKTIFDFIFNPIDNLI
                     YKICAIDRKNMTWQKYSLHLIAFNALVAIFSFVIFYLQDKLFLNPNLINSMKGDLNLN
                     TVISFITNTNLQHYSGESALSLLSQNTGILLAMFVSSASGYSACMAFCRALCGMQMGN
                     FYEDFTRIITRLMLPLSFILAVIFISEGVVQNYHANFSVLTLENKFQSIATGPVAALE
                     SIKHLGTNGGGFFGANSSMPFENPTSLTNFLQILSMMLIPSACVVAFGLMVYHRKERQ
                     GFALMGKEGGVIFGAMGIIFIISLLLIYFSEKMSNPNLDSLGLNANLGNLEGKEIRFG
                     TDGSSLFSAVTTAFTTGSVNNMHDSLNPLSISATLLNMMLNVAFGGEGVGLMNMIIYV
                     LLTVFICALMIGRTPEFLGKKIESAQMKLIALVILIHPLLILVLSALAVVFAKDSISN
                     PSFHGLAQILYEFSSSAANNGSGLEGLKDDNLFWNLSTAFAMFCGRYLVLIAQLAIAG
                     SLLAKNTQENTANSLKTDNLTFMFVLVCIIYIFTALTFFPVLTLSSVAEYLSLWH"
     gene            complement(16557..16744)
                     /gene="kdpF"
                     /locus_tag="ACHDOB_000299"
                     /pseudo
     CDS             complement(16557..16744)
                     /gene="kdpF"
                     /locus_tag="ACHDOB_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA];
                     GO_process: GO:0043462 - regulation of ATP-dependent
                     activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
     gene            complement(16886..18310)
                     /locus_tag="ACHDOB_000300"
     CDS             complement(16886..18310)
                     /locus_tag="ACHDOB_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HFN3325250.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
     gene            complement(18474..19724)
                     /locus_tag="ACHDOB_000301"
     CDS             complement(18474..19724)
                     /locus_tag="ACHDOB_000301"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HFN3325251.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNINSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(19724..20452)
                     /gene="lptB"
                     /locus_tag="ACHDOB_000302"
     CDS             complement(19724..20452)
                     /gene="lptB"
                     /locus_tag="ACHDOB_000302"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HFN3325252.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(20445..20852)
                     /gene="tsaE"
                     /locus_tag="ACHDOB_000303"
     CDS             complement(20445..20852)
                     /gene="tsaE"
                     /locus_tag="ACHDOB_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HFN3325253.1"
                     /translation="MKEFILAKDEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSTMQKYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(20849..21094)
                     /locus_tag="ACHDOB_000304"
     CDS             complement(20849..21094)
                     /locus_tag="ACHDOB_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HFN3325254.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLAIPSTKSIPKNAQNEYVVKL"
     gene            21249..22469
                     /locus_tag="ACHDOB_000305"
     CDS             21249..22469
                     /locus_tag="ACHDOB_000305"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HFN3325255.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMIIGRESANDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            22482..22925
                     /gene="rplI"
                     /locus_tag="ACHDOB_000306"
     CDS             22482..22925
                     /gene="rplI"
                     /locus_tag="ACHDOB_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HFN3325256.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTFKSLGLHEVSVKLGHAIHAKFNINIKAE"
     gene            22925..23467
                     /gene="hslV"
                     /locus_tag="ACHDOB_000307"
     CDS             22925..23467
                     /gene="hslV"
                     /locus_tag="ACHDOB_000307"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009376 - HslUV protease complex
                     [Evidence IEA];
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HFN3325257.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHASLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            23464..24783
                     /gene="hslU"
                     /locus_tag="ACHDOB_000308"
     CDS             23464..24783
                     /gene="hslU"
                     /locus_tag="ACHDOB_000308"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009376 - HslUV protease complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HFN3325258.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNIQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            24780..25655
                     /gene="era"
                     /locus_tag="ACHDOB_000309"
     CDS             24780..25655
                     /gene="era"
                     /locus_tag="ACHDOB_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HFN3325259.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDKHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLIHRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            25642..>26182
                     /locus_tag="ACHDOB_000310"
     CDS             25642..>26182
                     /locus_tag="ACHDOB_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325260.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYFYQEGKFINLKKIENFNPSNMDLFFKQNRFIELLKHYESKLLLYQDLDTIK
                     HYFSSQIKCLNLNDILDKNS"
BASE COUNT         9527 a         4212 c         3929 g         8514 t
ORIGIN      
        1 cttttatgga agttttattt ttccaaatgg aaattttatt tttccgccga caaaagattt
       61 gtaaattaat aaaaaaaaag atataattgc attttaattt agagaaagga atcaatatga
      121 aacaagggga ttttacagag gttgcaaagc attatcataa tagacctgct tatagtccgt
      181 ttttacttga aaaacttgta gcttgtatca atgataaaaa taaaaattta aaagatttaa
      241 atattgttga agtaggagct ggcactggaa aacttactaa gatgttggga gaaatgtttg
      301 gatgccaaat tagcgctgtg gaaccaaacg ataatatgcg tgaagaaggg caaaaattta
      361 cacaaaattt atcaaatatt tcttggcaca aaggaagtgg tgaagaaacc tgcatgagca
      421 ataatcaagc tgattgggtc atcatggcta gttcttttca ttggacagat cctaaaaaat
      481 ctctcccaga atttaatcgt atattgacag ggggggggta tttcactgcg atttggaatc
      541 ctcgccacat tgtagagggt tcggtttttg atgaaatcga aaaggagatt aaacatattg
      601 ttccagagct tgctcgtgta agcagtggca ctcaaaatgt taaaaaatgg gaagaaattc
      661 ttgtttcaac aggagatttc acagactgct tttttatgga gtgtgactat aaagagtttt
      721 gggataaaga acgttatctt ggagcttggc attctgtaaa tgatatacaa gcacaagcag
      781 gtgaaaaaag gtggaaggaa attttagaga tgatagaagc taaaatttct catatgcaaa
      841 gtatagagat tccttataaa ataagagcat ggacagctag aaaagcataa aatacctcct
      901 ttttttcatc aagcttgtca aagatgaaaa aaaggaaata aaatgcaaaa actagtagaa
      961 caagtgtggg attataccaa gcatgctaaa ttttatagct atagaccaaa ttatgctcca
     1021 aaaactatag atatgcttat tagtttagtt ggaaaaaaag atattaaagt cgctgatatc
     1081 ggtgcaggaa ctggaaattt aagcattatg cttttagaaa gaggatgtaa ggtagtatct
     1141 gtagaaccaa atgatgcgat gcgtgagatc gggatagaaa gaactaaagg tgagaaggtt
     1201 gattgggtta gggcaacagg tttaaactca acacttcaaa atagtgaatt tgattgggtg
     1261 acttttggta gtagttttaa tgtaatggat agaaatgaag ccttagagga agcgcatcgc
     1321 ttattaaaat cagagggata tttttcttgt atgtggaatc acagggattt aaacgatcct
     1381 gtacaaaaaa tagctgaaga tactattgta gaatttgtac caaattatac aaggggaaca
     1441 agaagagaag atcaaagacc aattatagag agtcgaaagg atctttttga taatattgtt
     1501 tatattgaag aggattttta ttttcatcaa agcattgaaa attatattaa tgcatggaaa
     1561 agcgttaaaa atccttactg ggatttggag gctgatgaag gaaatgaact ttttaataaa
     1621 attagtgata aaatttctca aagacttcct aaggaattta gcataaaata taccactcgt
     1681 tgttggagtg ctaaaaaaat ataaaactaa ggaaaaatat ggcggagtta aaatttaaaa
     1741 ccaaagcaca aaatttaaaa aatttacaaa caaaattaaa aaaagcaaaa gttctatctt
     1801 tggttttaac ttcgcttgaa gaattaatat caaatgaaga taaagtttta caggacattc
     1861 aaactttaaa ggctaataga ctcattataa gaagttcttc tttaagtgaa gatagtatga
     1921 aaaactccaa tgcaggtgct tttctttctt tggcaaatat taaagctgat tctaaagatg
     1981 aattattaaa agctttatat gaagttgcca attctatgcc atcaaaaagc gatgaaattt
     2041 tagttcaacc tatgcttgaa aatattactc tttgtggcgt tggttttagt gttgataagg
     2101 ataatttttc cccttatttt tgtcttcaat atgatgaaaa tggttcaaat agctctatta
     2161 cagatggaag tagtaagagt gcaaaaactt actatcatta cagagattat ttagaattta
     2221 aagatattag acttcaaaaa attatagaac ttataaaaga attagaagtt ttatataact
     2281 gttgtttttt agatgttgaa tttgcatttg ctattcaaga tgatgaggaa gaactttttt
     2341 gcttgcaagt gcgtcctttg gttatgcatg aaaaaaataa tttatttcac tctttaccaa
     2401 aagaagcttt atatagattt tataaacgtt ttgagtcttt aaaagaatca agatctagag
     2461 ttttgggaga taaagccatt tttggggtaa tgcctgattg gaatccagct gaaatcatag
     2521 ggttaagacc taagcgttta gcttttagtt tatataaaga aatcattacg gataatatct
     2581 gggcgtatca aagagataat tatggttata gagatttaag atcccatcct ttaatccatt
     2641 cttttttagg cattccttat gtggatgtaa gattatcttt taattctttt ataccaaaaa
     2701 aattagatga aaatatcgcg caaaaacttg tcaattttta cttagataag cttaataaaa
     2761 atcatgaatt gcacgataag attgaattta atattgttta ttcttgttat gactttaata
     2821 gttctaaaaa attagaagaa cttttaaatc atggttttaa tgaaaatgaa atcaaaagat
     2881 tagaattttc attattagaa cttacaaaca agattattaa tcctagatca gggctttatt
     2941 taaaagacat acaaaaagct tataagctaa aagaaagata tgatggcatt attaattcta
     3001 atttttcttt aattgataaa atttattggc ttattgaaga atgtaaacgt tatggaactc
     3061 tgccttttgc gggggtggct agggctgcat ttgtagcaat gcaactttta aattctttag
     3121 ttgagattga ttttataacc aaagaggaaa aagatgattt tttaaattca ctcaatacag
     3181 tgagtaaaaa tttaagtaaa caaacaaacc atcttaattt tcacaacaaa gatcaatttt
     3241 tgaaagattt tggacactta agagcaggaa cttataatat tttatctcca agatatgatg
     3301 aagattttga actttatttt gatgtggatc aaaaagatag taaagtttat ttgcaagata
     3361 aagcttttgt tttttcagaa gaaaagacaa aagctttaaa tgctttactt agagaacatg
     3421 gactagagat taatgcttgt gaattttttg attttttaaa gcaggctatc gagggtagag
     3481 agctcgttaa atttgaattc actagattgc tttctaaggc tatagtttat atagaagaat
     3541 taggcaaata ttatggtatt gaaaaagaag atttggctca tcttgatata aaaagcattt
     3601 taaatcttta ttctagtctt tattctataa atccaaaaga gcagtttgta gaagaaatta
     3661 atcgcaataa aaaagaatat gaacttacac aagctataaa acttccttct ttgctttgca
     3721 atgccgatga aattttttct ttttataatc atagtattat tccaaatttt attacacaaa
     3781 agagcattac tgcatttacg gcgaaggaaa atgataaaga tttagaagga aagattgttt
     3841 taatttatgc agcagatcct ggatatgatt atttatttac aaaaaatata gcaggactta
     3901 ttacatgtta tgggggtgct aattcacata tggccattcg tgcctcagaa cttggaatgc
     3961 ctgctgttat aggagttgga gaagaaaatt ttgaaaaata tttaaaagct aaaaaaataa
     4021 atatagaatg tgaaagtgag caaatatttt gtttataggt attactcaaa ggcttattta
     4081 caacgaaagt tatcatgaag aaagagaatg tttggctttg gattggggaa aattatttaa
     4141 taaagattta tttaaaaatt ttactcctct tcctcttagc tatgaaatag atttttctca
     4201 ttataaacat ctaataaaag ctgtgatatt aagcggtggt aatgatttaa gtttttatag
     4261 tcctaatgtc ttatctaaaa agagagattt atatgaaaag caagttatag aaatttgttt
     4321 aaaagaaaaa ataccacttt taggaatttg cagaggagct cagatgatag ctcattattt
     4381 taacagccat ataagtcctt gtgaaaatca tataggcaaa catgaagtat ttttctcaaa
     4441 agaaaaattt ataagtaatt cttttcataa ttttgctatt gaaaaattag gcgaagatct
     4501 tgtagaactt tgcttagcaa aagataatac catagaagct tttaaacata agtatgaaaa
     4561 tatttttggt ataatgtggc atattgaaag agaaaatggg cttaataata ttcaaatttt
     4621 aaaagagtgg tttagtttaa tcaaggaata atatgaatgc aattatctta gcagcaggtt
     4681 ttggatcaag gctgatgcct ttaacaaaag atcaaccaaa gtgtatggtt gagtataaga
     4741 ataaaaaaat aatagattat gaaatcgaag ctttaaaatc agcaggtata aatgaaatag
     4801 ctgttgtggg tggatattta aacgatgtgc taaaaaatta tcttaataaa tatgatattg
     4861 agcatttttt tattaattca aaatatgata aaaccaatat ggttcatact tttttttgcg
     4921 ctaaagattt tatattaaaa tgcatcgaag aaaaacaaga tttgattatt tcttatgcgg
     4981 atattgttta ttttcaagat tgcgtgcaaa agcttataaa tgccaaagaa gaacttgcta
     5041 tagtagttga taagtcttgg cgtaagcttt ggaacaaacg ctttgcaaat cctttagaag
     5101 atgctgaaac attaaagatg acaaatggtt atattataga acttggaaaa aaagctaatg
     5161 cctatgatga gatagaagct caatatatag gactttttaa attttcttat caatttcttt
     5221 ctgaagttat tgctttttat gaaatgcttg accgagatat tttatatgat aataaaaatt
     5281 ttgaaaatat gtatatgaca agttttttgc aggctttgat tgaaaaatac aacaacgcaa
     5341 aagcagtgga aattgatggc aattggtgtg aaattgattt tatgagtgat ttaaaaatta
     5401 atttcatata aaatcaatag gatcaatatc cgcacttaca tttttaaatt gcaaaatata
     5461 attttcaatt gccactaaag ctttataatt ttcacttcta agtaataaat aaaaacgata
     5521 ttttccatgc agcatttcaa ctccacaaat tccatagcct actaattcta cttgtttgat
     5581 atttttaaat tgataggcaa gtttttcaca aagtttttgt gcattttttt gatctttatc
     5641 ttctataaga actcttaaaa ggcgtttaaa tggaggataa agatcttttc tattttctaa
     5701 ctcatctttt aaaaaagcat cataatcctc tatatacctt tcaaaaaaag ctctattttt
     5761 tgtttgtaaa agcactcttg cttcgccttt acgccctgcc ctaccagcaa cttgcatagc
     5821 taaagctaaa gtttcttcac tcgctctaaa actaggacgc aacaaatact catcaagccc
     5881 taaaatcaca ctcaaatcca cgctatgata atcatgccct ttagcaagca tagaggtgcc
     5941 aataagtata tcgatcttat tttcattaaa gtcttttaaa atagtattaa gctttttaac
     6001 gcttgtgatt tcatcgctat caaattttgc tatttttgct aaaggcaaag cattttgcaa
     6061 aagctctaaa agttcagcag tccccatttt tctagcttct aacatttctc ctttgcaact
     6121 tggacaattt tgctctatta aagaagtata attacaataa tgacatttta aaacattttt
     6181 ctttttatgc atactcatgg cgatagaaca aaaaggacat tttatcgttt ctccgcaatc
     6241 cttgcaaatg atttgcctaa aattagccct tgtaggtaaa aacactatag cttgtttttg
     6301 atgttttaaa cttttttcta attcgcttaa aagcataggc gttataccaa gctcattttc
     6361 atcatataaa aaatgttttt tgctctcaaa aaaagttcct tttagtctaa aacttttttg
     6421 tttgtaaaaa ctcgtcaaag atggggttgc agaacctaaa accactttaa tattattttt
     6481 ttgacccaaa aaaagcgcta aatctcttgc attgataaaa ggctgattag aagccttata
     6541 agaattatca tgttcttcat ctactacaat aagtcctaaa tttctaaaag gcaaaaacaa
     6601 agccgatctt gcacccgcta ctaaaagtac ttctcccttg caaaaacgct ctaaatattc
     6661 ttgctttttt ttctttgaaa ttttagaatg ccacaggaaa aaattatcct taaaatacac
     6721 ttctaaacgc tttttcattt gtggagtaag tgcgatttct ggcattaaaa gtaaagcttg
     6781 cttaccctgt tctaaacact cttttatcaa agaaatataa atttcagtct tgccactacc
     6841 tgtatcagca aaaagtaagg aattattttc tttttgaaga aaacttaagg cattttgttg
     6901 ttgattgctt agcttagggg tatctttaaa aaacattttt tgacattcat atttaggact
     6961 ggtttcaaaa aagcccaaaa caaaaccaag ttttgaagca taataataaa caataaaatt
     7021 tgccaattca aattgcaaag gagttaaaaa atactttgta atttctttaa tttctacggt
     7081 tttaaaatca ggtttttgac attctttaag cacgatagct ttaaggtttt ttttagtttt
     7141 taaatccact aatacttgtg ttaaaggttt gatttcatca aaactatgaa aagttaaatt
     7201 atccaaatac aaaccacaaa ttgcaagttc ataatatctt atatcagatc tttgcatcta
     7261 gaacttccta tacactttaa caagccttct ttagaatcat aaataaattc aaccatctct
     7321 ttggcgttta atgcaaatct atagtgattt ttacctattt ttatccaaga tttaaaatca
     7381 gaataaatag gtgtatcaag caaagaataa tcacaatcat ttaaacaata aaagagtttt
     7441 tctttggctt gattgttttg cgcattatct aaaatttctg gaaaatttaa atttttaagt
     7501 ctcatttgac tacgcattaa agcaagagct gagcttagca tttcatagtc catttttaat
     7561 tttaaaattt taacctcatc ttttgtagta ttgataaaag ataaagataa gcttgataaa
     7621 attcccaaaa tcaaaatcac aaaaacaagc tcaagcagag taaaagcttt attcattttg
     7681 tcgggagttc ttcattgatt gcttttatta gtttcttaag ttctctttct aaaatataat
     7741 tttcataact ttttttaaca aacgcatcta caaagcgttt aagttctatt tttttagtac
     7801 cgccagaaat caaagcgata tcatcttcta aaaaatttgc aaattcttca ctgcacttaa
     7861 caatgaaatc ttttgcattg acattaacaa tgacttgttt tagattatct gccaagaaca
     7921 gcctctattt tcttgtaaat atcttcgctt tctatattgc gagatttaag ttcttcttct
     7981 aaacgcatga tttgattact tttcgcttca ttttgtgctt taacgcttac aagctcattt
     8041 cttaaagcct cattggcttc gcaaacttcg ttatactttt caattaattc atttacttta
     8101 tctgtcatag tattgattat tttttcatca aacatatttt tgccttctta agaaatttgt
     8161 aatttatgga aaatattatt tgatattgta gcagaaaaaa atttaaattt aggtttttat
     8221 tgtcaattaa tttttaatta aagcattttc ttttaaaatt ttttcaaaaa taaaaataaa
     8281 gtagaaaaat gttagaactt accagcgaat ttaaacccag tcccgatcaa caagaagcca
     8341 taaaaggcat agtaaaaagt ataaaaaaag gcaacaaata tcaaacctta ctaggcgtta
     8401 caggaagtgg aaaaaccttt accatggcaa atgtcattaa agaacttaat atacccactc
     8461 ttatcatgag tcacaacaaa agcctttgtg cacaacttta tagtgaattt aaaggctttt
     8521 tttctaaaaa tcatgtagaa tattttatat cttattatga ttattatcaa cctgaagcct
     8581 atatcccacg cactgatgtt ttcatagaaa aagacagctc gaccaatgaa gacttagagc
     8641 gtttaagact gagtactact gcttctcttt taagttatga agatgtagtt tgcatagcta
     8701 gtgtttcagc aaattatgga cttggtaatc caaatgaata cataggcatg gttttaatct
     8761 ttgaactagg tatgcaaatt tcacaaaaag aacttttaaa aaaacttgta gatatgggtt
     8821 ataaaagaaa tgataatttt tttgatcgtg cagattttag agttcaagga gatattatag
     8881 acatttatcc agcttattat gaagatgaag tagtaagact tgaatttttt ggcgatgagc
     8941 ttgatgctat gtatcattac aatgttttag aaaataaaaa aggtaaagat ttaaaacgct
     9001 tcatactcta tcctacaagc cagtttagcg tgggcgaaac aagattaaaa caagcgataa
     9061 aagacataaa agcagaactt aacgaacgcc ttgcttattt tgagcatgaa aataaactcg
     9121 tagaatatca acgccttaaa caaagggttg aatttgatct tgagatgctt acaagcacag
     9181 gaatgtgtaa aggcgttgaa aattatgcaa ggcatttaac agggcttaaa gaaggtgata
     9241 ctccttatac gctttttgat tattttgcga ttaaagatag aaaatttctt gttatagtcg
     9301 atgaaagcca tgtatcttta ccgcaattta gaggtatgtt tgcaggagat agaagcagaa
     9361 agcaaacctt agtggattat ggttttcgtt tgccttcagc cttggataat cgtcctttaa
     9421 tgtttgatga atttatccat aaaaattgtc aatttctttt tgtttcagct acacctgcac
     9481 ctttagaact tgaacttagc aaagaaaaca tctttcatca aatcatgcgt cctacaggac
     9541 tgcttgatcc tttaatagaa ttaaaagata gtgataatca ggttgaaatt ttatttgatg
     9601 aggctaaaaa agtcatacaa agaaacgaac gggttttagt aaccgtgcta actaaaaaac
     9661 tcgctgaaga acttacaagg tattatttag agcttggtat aaaagtcaaa tacatgcact
     9721 cagacatcga tgctatagaa cgcaatgaaa tcataagagg tttaagaagc ggtgcttttg
     9781 atatgctaat tggcattaac ttacttagag aaggacttga tttgcctgaa gtttcactca
     9841 ttgccattat ggatgcagat aaggaaggct ttttaagaag cactacaagt ttaatccaaa
     9901 ccatgggaag agcagctaga aatgtcaatg gcaaggtttt gcttttttgc aaaaaaatca
     9961 caaaatccat gcaagaagct atggatacca ccaatgaacg ccgcaaactt caaatggctt
    10021 ataataaaaa atacaatatt accccaactt cagtcaaacg ccatattgaa gagagtttga
    10081 aaaatgaaga ggatttaggc gaaatttatc gcaaaggtaa aaaactagaa aaaatgcctg
    10141 ctagcgaaag agcaaaactt gtcaaagaat taagaaagca aatgcttgaa gcagcaaaag
    10201 cacttgagtt tgaaaaagct gccgcaatta gagatgagat taataaatta agggatttat
    10261 aataaaaata tatcccttgt tctaactcct gcctcattaa gtaaagcact taaaatttca
    10321 tactgaaagt cttgcaaggg acgtttttct tttaaaacta tacctatgac ccctttagtt
    10381 ttttccccat cttctatagg taaatacata gcattagcat taggcagggt atttgtacaa
    10441 acacctgctc tttctttatt tgttgcaacc cattgagcaa tagcaatctc atcagcacta
    10501 aaacaatttt ttaacatttg cttatcatcg ttaaaaaaca acaaaggttt cgataaaata
    10561 ttgtttttat ttataggata aataataata ggtaaattta ataattttaa agcttgattt
    10621 ccaagttgtt cccaaagctc ttgtttgctt ttcactcttg ctaacttttc actattttca
    10681 agcaaaatag ccgttctata agctctttta gtgagttctt tagattgcaa ttttaatctt
    10741 ctagtaaaaa cagctgttaa aaatccaact ataaacatag ttgtaaaagt aataatattt
    10801 ccactatcat gaactttaag actaaaaata ggttctaaaa agaaaaaatt ataaatcaaa
    10861 acacttacca aagaagaata aaaggcgaaa attttattat cagaaataaa agaagaagca
    10921 aaaactgcta aaataaaaat cataactata ttacttggct gagtattaaa tttatgaaat
    10981 acaaaagcta taaaagttgc taaaagcaaa actcctgtga tttttaaaaa acctaaaaaa
    11041 tcaaaacctt ttttacttcg tattttagga gtagaaattt gattttcatt aacaagatat
    11101 aaatcaatat taggtgcttt tttagcaaca gcttcaaaaa tctcttcttt aaactttttt
    11161 ttatctttat ttttacctaa aacaatttta gaaacattgc taaggcttga atactctgca
    11221 atttgtcttg ctatatcatc atcatatacg ctaatgattt cagcatcaaa acttttagct
    11281 agttctatat tttcttctaa ggctttttct tctttaatat tgggattttt tatataaagc
    11341 gcactcaatt tagcatgaaa agctaaagca agtcttgcag ctgcacgaat aacctttgca
    11401 tttgaagcat taatacaaac taaaatatgc tctccagtat gataagctaa atcatcatta
    11461 ataagccttt gttcacttgc tcttaaattc actcttgaag caagtcttct taaggcaatc
    11521 tcacgcaaag ctataagtct ttcttgacga aagaaatttt caagtgctag tttagcttgt
    11581 ttttccttat aaattttacc atcttgcatt ctttttaaaa gcttattagg ttcaatatca
    11641 acaagttcaa cctgatcagc ctcatcaaaa atacgatcag gaatacgctc tttaacttct
    11701 atcttactga tattagcgac taaatcattt aaactttcta aatgttgtat atttaaagta
    11761 gtataaacat caatccctgc ttttagaagt tcttctatat cttgaaaacg cttttcatta
    11821 cgcaaccctt tagcattagt gtgtgcaagc tcatctacta aaaccaaagc aggttttctc
    11881 ttaagggtag cgtctaaatc aaattctttt aatactatat ttttataagg aatttcaaga
    11941 ttagctatac tttcaaaacc ttgtgttaaa gccattgttt caggtctatc gtgaggctct
    12001 atatagccta aaacaacatc aactccatta tcccttaaag ttctagcttc acttaacata
    12061 gcataagttt ttccagaacc tgcagcataa cctaagaaga tttttaattt tgcaagtttg
    12121 tttttttctt cttccttggc tttaacctca agttttttaa gaatttgttc aggactttgt
    12181 ctttgcatgt ttattctttt ttcatggctt tagcaatagc tatattaaca gctaaaacat
    12241 taaccttttc ttccccaaaa atccctaaaa atttagactc ggtattttct tgaatgattt
    12301 tttctagttc ttctttggta atttttgaag attgacttat cctaggaatt tgcactaggg
    12361 ctgcttgaag actgatatga ggatcaagtc ctgatcccga agcacttaac aaatccaaag
    12421 gaatttgttc ttttgtaatt tgcggattct catctaaaaa tttttgcaaa tctttttgca
    12481 cacgctcttt taaagcagga tttgacatag cataattaaa tccacctgaa cttacactgc
    12541 tttcatttgt atcacttgta ttgtaatttg atacagatgc tcttgaatgt agaaaataag
    12601 gcttattaaa atcttgaccc aaaagctttg aacctaccgc tttgcttata tccaaagtcg
    12661 gacgaccttc tttatccact aaacttccac ttgattgata aggaaaaata aattttgcaa
    12721 ccgtatttaa agcaaaagga taaataagag tacacaatat tagcattacc acaaaaaaac
    12781 taagcaaagt tctaagcata tcacactcct aaaattctaa gtatccaagc tgtaggaata
    12841 tcaattattt ttatccctat aaaaggtgct atcataccac ctaaaccata aatactcaaa
    12901 tttcttaaaa gcaaatgctc acttttcata ggcttaaatt taactccacg catagcaata
    12961 ggtatgagca aaggtataat aatagcatta aaaataagtg ctgataaaat agcgctttgc
    13021 ggggtagcca aatgcataat atttaaaatt tgcatttgag gtaaaaccac actaaacata
    13081 gcaggtaaaa tagtaaaata cttagcaata tcatttgcca tactaaaagt tgtaagactg
    13141 cctctagtaa taagcaaacc ttttcctatt tcaaccactt ctaaaatttt agtaggatta
    13201 gaatcaagat ctatcatatt ggctgcttct ttggccgcct gagttcctga gttcatagct
    13261 atacctacat cagcttgtgc aagagccgga gcatcattgg ttccatctcc tgtcatggct
    13321 actatcttac cttgagcttg ttctttttta atggcttcta ttttatcttc aggcttgcat
    13381 tctgctataa atccatcaag ccctgcttct ttagctatag tagctgctgt taaaggattg
    13441 tctccagtac acattaaagt ttttatgccc atttttctaa gctcatcaaa gcgctcttta
    13501 agtcctggtt ttactgtatc ctttagataa atcactccta aaattttttc atttttacac
    13561 actaccaaag gagtgccacc aagatttgaa atttccatta ccttagtttc taaatcgcta
    13621 ggaatttttc cattcatttc gcttatataa gctcttatag catcaaaagc acctttgcga
    13681 atttttgtat tatcttgtaa atccacacca ctcattctat tttgagcgct aaattcgata
    13741 aattctttaa tatcattacc ttctaattca taacccattt tttgagccaa tgcaactatg
    13801 cttttacctt ctggagtttc atcttttaaa gaggataaaa cacaagcttt aatcatttct
    13861 tctttactta taccttggac ttcataaaat tcatttgcca aacggtttcc aaaagtaatc
    13921 gttcctgttt tatccaaaat catagtatca acatcaccac aactttcaac agccttgcct
    13981 gaaagtgcga tcacattaaa acgcgttacc ctatccatac ctgctattcc tatagctgat
    14041 aaaagccccc ctatagttgt aggaataaga catacaagca atgctactaa ccacgaaata
    14101 ggcaaactca cgcctaaaaa ttgcataaaa agatataaac ttacaaccac caccaaaaaa
    14161 ctcaaactaa gaacaattaa aagagtatta agagcaattt catttggagt tttttgacgc
    14221 gcagcacctt ctacaagatt gatcatttta tctaaaaaac tttccccagc tccaactaaa
    14281 attttaatct ttaaaaaatc agttaaaacc gtagtcccac ctgtaacaga agaaaaatca
    14341 ccgcccgctt cacgcataac aggagcactt tcacctgtaa tagctgattc atcaacactt
    14401 gcagcacctt ctataatttc tccatcatta ggtataagtt cacctgcttt aactaaaact
    14461 atatcaccta tttttaactc gctagaatta agcatttctt cactgccatc actttttatg
    14521 cgtctagctt tagaatcctt tttgctttgt cttaaggtag ctgcttgggc tttacccctt
    14581 ccttctgcaa tactttctgc aaaatttgca aaaagcaagg ttataaataa aataaaagtg
    14641 attaagatgt tataaattct ttcatcagaa tttccattaa acaaagtagg aaaaatactt
    14701 aaaatcaaag taagaatcaa tccaacttcc accataaaca taacaggatt ttttaccata
    14761 aagcgtggat caaattttaa aaatgctcct tttatggcat tatttaaaat ttcttttgta
    14821 atgagtttat tttgtttttt agacattgac tctccttaat gccataaaga taaatattct
    14881 gcaacgcttg ataaagtaag cactggaaaa aaagtaagtg cagtaaaaat atatataata
    14941 caaacaagca caaacataaa agttaaatta tccgttttta aagaatttgc agtattttct
    15001 tgtgtatttt tagccaaaag cgatccagct atagcaagct gagctattaa aaccaaataa
    15061 cgcccacaaa acatagcaaa agctgtactt aaattccaaa ataaattatc atcttttaaa
    15121 ccttcaagtc ctgaaccatt atttgctgcc gaagaactaa attcatataa aatttgagcc
    15181 aagccatgaa agctaggatt gcttatacta tcttttgcaa aaacaacagc taatgcactt
    15241 aaaacaagga ttaataaagg atggataaga attaccaaag ctataagctt catttgtgcg
    15301 ctttctattt ttttacccaa gaattctgga gttctgccta tcattaatgc acaaataaac
    15361 acggttaaaa gcacataaat aatcatattc ataagcccta ctccttcgcc accaaaagcc
    15421 acatttaaca tcatatttag caaagtagca ctgatgctta aaggatttaa actatcgtgc
    15481 atattattga cgcttcctgt agtaaaagca gtagttacag cactaaataa actcgaacca
    15541 tctgtgccaa atcttatttc tttaccttct aaatttccca aatttgcatt taaacccaaa
    15601 gaatccaaat ttggatttga cattttttcg ctaaaataaa ttaaaagcaa agaaatgata
    15661 aaaataatcc ccattgcacc aaaaataact cccccttctt ttcccataag agcaaaacct
    15721 tgtctttctt ttctatgata aaccatcaat ccaaaagcta caacacaggc actaggaata
    15781 agcatcatgg ataaaatttg taaaaaattt gtaagtgaag taggattttc aaaaggcatg
    15841 cttgaattag caccaaaaaa accaccccca tttgtcccta aatgttttat agactcaaga
    15901 gctgcaacag gacctgtggc aatgctttga aatttatttt ctaaagtaag cacgctaaaa
    15961 tttgcgtgat agttttgcac cacgccttca gagataaaaa ttacagccaa aataaaactt
    16021 aaaggcaaca tcaaacgcgt aataatacgc gtaaaatctt cataaaaatt tcccatttgc
    16081 ataccacata aagcacgaca aaaagccata caagcagaat atccacttgc acttgaaaca
    16141 aacatagcaa gtaaaatgcc tgtattttgg gaaagcaaac ttaaagcact ctctccacta
    16201 taatgctgaa ggtttgtatt tgtaataaaa ctaattacag tatttaaatt caaatcccct
    16261 ttcatagaat ttatcaaatt gggatttaaa aaaagtttat cttgcaaata aaaaatcacg
    16321 aaagaaaaaa tagccactaa ggcattaaaa gcaattaaat gcaaagaata tttttgccaa
    16381 gtcatatttt ttctatcaat tgcacaaatt ttataaatta agttatcaat tggattaaaa
    16441 ataaaatcaa aaatagtttt tttacagctt gcaattttat aaagataatt tccaaaaatt
    16501 aaagccaata taaaagctat aatcagtgtt attaaaattt ctagcatatt tttcctttaa
    16561 aatttttcag gatataatag agcataaaat aaataaagag caagtattaa gcttaaaact
    16621 agtaaaaata tcatccgcgt gtcctagttt gaacttcaca aaaacggata aaaaaccata
    16681 aactaccaaa agctaaaagc agaagcaaag caaagataac atccatagga tagccctttc
    16741 tcattgattc aaaataggat ttattctatc cttgttaagc ttatattttg attaatacta
    16801 attttatgat ttatttataa tttttatcta tattaaataa aaagacaaat gaaaaattta
    16861 gcaggaaaaa tcctgctaaa aattgttaaa gataacccgc tgccatagca ataaaatatc
    16921 ctgctataca agaagtgatt acacctataa gacctggtaa aataaaacta tgattgataa
    16981 caaatttacc gatgtgagta gtacctgatc tatcaaattg tatagtagct aaatcgcttg
    17041 gataagttgg taaaatataa tacccataac aagcagccgc aaaggcaaca attacaccag
    17101 gttcaacacc aattcctaaa gccaaaggaa caaaagctga aatagccgct gcttgagagt
    17161 ttacaaattt tgaaattaaa agaagcatta cagcataagt ccaaggatgc tcttttacta
    17221 tatctccaag cgctgctttc atcataggag tgtgaactgc aaacatagta tcagccatcc
    17281 aagaaattcc aaaaaccgca acaagtgcta tcatacctga tttaaaaatt tcattagagc
    17341 cgattttctt tgcatctgtt ttagtaaaga tgataatcaa agaacctgct aaaagcataa
    17401 acatctgaat aactgaaacc atggataaaa catccatttt aggattgcct aaagcatcta
    17461 cttgaggaat gccatttttt acaacttgcc cccagtttgg acgcaagaaa tcaaatacac
    17521 ctaataaagc cactaaagca atagctccta agaaaatcca cattgcaacc caattgcttt
    17581 ttggaagttt aacacctaaa agtgttttag aatccccata aacatatttt ttaaattcag
    17641 gatctttaag tttttcttga aatacttcat ctttatccaa atcttttcct ctaaaccaag
    17701 aaaaaattcc tatacacaat acaccaaata atgtactagg tatggtaatt tgaagaagat
    17761 taatataacc atcaaaacct gctaatttat gattagcatt taaaagcaaa gcagtcaaac
    17821 tcacaacagc cacagataca ggagatgcaa taatacccat ttgtgatgat atagaagctg
    17881 ccgccattgg acgctcagga cgaataccgt ttttaatcgc tatatcataa ataataggca
    17941 taatagtata aaccacatgt cctgttccgc aaagtatggt caaaaagcag gttacaaaag
    18001 gcgctaatat tgtcaaaaac ttaggattgc gtcttaaaat tctttctgct atttgaagca
    18061 taacatccaa accaccactt gcttgcaaag ttgcactcgc aaccactacc gctaaaatcg
    18121 taagcataac atctatggct ggttttccag gctttatatg aaaagcaaat acaagcatta
    18181 aaatacctat accaccaagt aaaccaagcg ctatgccgcc tttttttgca ccgtaaaaaa
    18241 gacaaattaa aacgataatg atttggattg caaattgccc tccctcacta aggcttgtta
    18301 aaaagtccat tttaactcct ttgaaaattg atatttaaaa acagttatta ttgtatcaca
    18361 tttttaaatt aaagaataat atttctaaaa ataaaacaat aattttttat attatttaaa
    18421 ttaaatttaa atataaaaca aaagtgtaat gggtttgata gattgataga attttatcct
    18481 tcaagttcat ataatttttt tctatctgta gagcttgcta tattaagatg tttgcgatat
    18541 tttgtaatag ttcttcgccc tatatcgact ttaaattctt ctttgattaa ttctaaaatt
    18601 ttactatcgc ttaaaggttt attgcgatct tcattcttta ctaaatttgc cacaaattct
    18661 ttaacaccta catttgaagt ctctccctct tcatcaagag caaaagcaaa aaaatcacgc
    18721 aaggggataa gtcctctttc acaacttaaa tatttatttg ccacagctct tgatatagtc
    18781 gaagcattgc gttctaaatc aagtgctaaa tccttaaaag tcataggttt tatctctttt
    18841 cccatgaaaa aatcatattg atattctact atcataagcc ctattttata aagagtagct
    18901 tttctcatcg ctaaagcatc aactaaattt tttgcttctt tgatgtaatg acttaaaaaa
    18961 tcatgctcta aaccatcagt ttggattgaa atttcaggat aataatcatc attgattttt
    19021 actttaattt caccattttc tttataaaca aaaatatcag gaacaattat acgagaatct
    19081 tcaaaatatt ccaaaaaagg gggagtgcta aagcgcttaa gtacagctaa tgcttcttta
    19141 tataaaggct ctttggtata gttttgtata ttttcaaaat ccataattaa cattctacaa
    19201 aactcatcaa tatcttcatc taattccata ttttcaagag caaataaaaa tgcttcttta
    19261 taatctttag ctcccactcc tacaggatct aaaaatttaa atcttgctct tactcgctca
    19321 atttcttcta aggaatactc ttttaaaaat tcttcatcgt attcaaaata tccttcctca
    19381 tttaagcatt ctataatttt ttttgcaagt tcttgagatt tgtttgtagg aaataaagga
    19441 ggaagaatct gttcatttaa aagctcataa acactttttt tggcaagtcc tttactatcc
    19501 acaaaagccg aatttatatt atgtttataa aatgaatcaa aataattctt acccttatca
    19561 tgagtttgta tcgaatcttg aacatttaag aaaggattat cctcagcaaa tttatctaaa
    19621 ttttctttta aatcctctat atttgcttgt aaaatcggca accaagagcg taaagtttga
    19681 gaaattttag tcttgggcgc ttgggtgatt ttttgcttta acatcaatca aggagtttaa
    19741 actccgctcc taaataatac tttttcacgt ctttattggt tgcaatttca tcagcattcc
    19801 cactagcaag caaagaacct gatcttataa cataagctct atcacaaata gccaaagtct
    19861 cacgcacatt atgatcggta attaaaaccc caatccccaa tcttttaagc tctttaatta
    19921 aagtttgaat ttcagccact gctataggat caacacctgc aaaaggctca tcaagaagta
    19981 aaaacttagg ttcgcacatc aagcttctag cgatctcgca acgccttctt tcacctccac
    20041 ttaaacttaa acctttcctt aaacgaatag gctctatact taagagttca agcatttgct
    20101 caactttatc atgtaaaatt tttttatctt tataaaaaat ctgagccgct aaaagcaggt
    20161 tatcttctac gcttaaatcc ttaaaaatac tactttcttg aggtaaataa cctatccctg
    20221 atctagctct tttatttaaa ggatcttttg tcacatctaa accatctaaa agaacttttc
    20281 cactacttgg ggaaataagt ccacatatca tataaaaagt tgtcgttttt cctgcaccat
    20341 ttggccctaa aagtcctaca acttctccgc tattaacctc taaagaaatt ccatgtataa
    20401 tcttagtttt tttaataatt ttttctaaat ttacaatttc taatttactc ataaatttca
    20461 tactttcttt tgtcgtcttt aatgctaatt ttaatctgga tagtagaaat tccaaatttc
    20521 attaaagttt ttttcaaatt ttcaccgccc cattcaacca aatgcaaacc tttttcaaaa
    20581 aaattttcaa ataaaccatt cgctaaaagt ccttctaaac cttcttgata aatatcataa
    20641 tgataaatgc aaatatcatg attttcatat ttttgcatag tggaaaaagt tggagaatct
    20701 acccttgcat caagaccaag aaatttaacc caagcttgta ctaagcttgt ttttccgcta
    20761 gccaaatctc cttgaagcaa aacaacacct tctttaggca ttatttgaag catcgttttg
    20821 atctcatctt ttgctaaaat aaattctttc ataattttac cacatattca ttttgtgcgt
    20881 ttttaggaat gcttttcgtg ctaggtatag ctaggacttt atatttttga gtgtattcag
    20941 taaaatgcaa agtgatgata tcacccacct taacctcttt actcgcctta acaataacgc
    21001 cattaatccc cactacacca cttttacaca tatcctcaga aatagctctt cttttcgtga
    21061 tattaactac atttaaaaat ttatctactc tcataaaagc aattttagca aaaaaaatca
    21121 atttttagaa caaaatttgc ttacgccttt gctttatttt ttaagaaaat agcaagtaaa
    21181 aacttttctt taatgaaatt tggatacaat tttacaattt tcaaatctat tttaacaaag
    21241 gatatcttat gaaaaatgaa gtaaaaaaag tagttttagc gtattctgga gggcttgata
    21301 cgagcatcat tttaaaatgg cttcaagatg agtataattg tgaagttgta acttttacag
    21361 cagatattgg tcaaggtgaa gaactcgaac ctgcaagaaa aaaagccctt tctttaggca
    21421 taaaagaaga aaatattttc attaaagatt taagagatga atttgttaaa gattatgtat
    21481 ttcctatgtt tagagccaat gcgatttatg aaggagaata tcttttagga acaagtatag
    21541 caagaccact tatagcaaaa actcaagcac aaatcgccct gcaaacaggt gctgatgcgg
    21601 taagccatgg cgccacaggt aaaggaaatg atcaagtgcg ttttgaactt ggttatcttg
    21661 cttttaatcc cgatttaaaa atcatcgctc catggcgtga gtgggattta aacagtcgtg
    21721 aaaaacttct tgcttatgcg caaaaacacg gtattgatat ttctaagaaa aaaggaaaat
    21781 ccccttattc tatggacgca aatttacttc atatttctta cgaaggactt gttttagaag
    21841 atcctgcaca cgcacctgaa gaagatatgt ggagatggag taaaagccca aaagacgctc
    21901 caaatgaaag tgaaattata gaacttgatt tccaaaaagg agatttagta gcgataaatg
    21961 gagaaaaact aagtcccgca ggacttttaa ccaaacttaa cgaactaggc tgcaaacacg
    22021 gtataggacg ccttgatata gtagaaaatc gctatgtagg catgaaaagc cgtggttgtt
    22081 acgaaactcc aggcggtact atacttttaa aagcacacag agcacttgaa agcatcacgc
    22141 ttgatagaga agcagcgcac ttaaaagatg aactcatgcc aaaatacgca agtttaattt
    22201 ataatggcta ttggttctcg cctgaaagaa tgatgcttca agccttaatc gacgagtcac
    22261 aaattcatgc caatggcaga gtaaaactcg agctttacaa aggcaatgtg atgattatag
    22321 gacgcgaaag tgcaaatgat agcttgttta acgcagctta ttgtactttt gaagaagatg
    22381 aagtgtataa tcaaaaagac gcagcaggct ttatcaagct taatgctttg cgttttatca
    22441 tcgcaggaaa aaatggaaga aaattttaat aaaggaataa aatgaaagta ttattaatca
    22501 aagatgtaaa agcacttgga aaagcaggag aaataaaaga agtaaaagac ggctacggac
    22561 aaaatttctt aatcgctaaa ggctttgcta aagcagctac taatgaagtt ttaagaaaat
    22621 acgaaagcga caagaaaaaa gaggctgaaa atttacgctt tgaaatcgca aatttagaaa
    22681 aactcaaaga agaacttagc aaaatcactc ttgaaatttc aaaacccgta ggtgcaaatg
    22741 gaagtttgtt tggtggagta accaaagatg aaatcgctca cgccctaaaa gagcaaagtc
    22801 acatagaaat cgataaaaaa agtttagaat gtgacacttt taaaagtctt ggacttcatg
    22861 aagtaagcgt aaagctcgga cacgcaatcc acgctaaatt taatataaat ataaaggcgg
    22921 aataatgttt cacgcaacaa cgattttagc ttacaaaggc aaaaacaaat ccgtaatcgg
    22981 tggagatgga caagtaagct ttggaaacac agtattaaaa ggcaatgccg taaaaataag
    23041 aaaacttaat aatggtaaag ttttagccgg ttttgcaggc tcaacagctg atgcttttaa
    23101 tctttttgat atgtttgaaa atctccttca aagttctaaa ggcgatcttt taaaagcagc
    23161 gattgacttt tctaaagaat ggagaaagga caaataccta agaaaacttg aagccatgat
    23221 gcttgtactt gatagaaatc acattttttt actttctggt acaggcgatg tggtcgaacc
    23281 cgaagatgga caaatcgcag ccataggaag tggtggaaac tatgcacttt cagctgctag
    23341 agccttagca aaacatgcaa gtttagatga agaagagctt gtaaaatcaa gccttcaaat
    23401 cgcgggtgaa atttgcattt ataccaatac taatatcaaa acttatgtga tcgaggatga
    23461 gaaatgaatc taactccaaa agaaattgtt aaatttttag atgattatgt cataggacaa
    23521 aaaaaagcta aaaaaatcat agctatagct ttaagaaatc gctaccgcag aatgcaactt
    23581 agccctgagt tgcaagatga tatagtgcca aaaaatatct tgatgatagg ttctacaggc
    23641 gtaggaaaaa cagaaatcgc taggcgttta gctaaaatga tgggctttcc ttttatcaaa
    23701 atcgaagcga gcaaatatac tgaagtaggt tttgtaggtc gtgatgtaga aagtatggta
    23761 agagatcttg ccaatgcggc tttaaattta gtaaaaaatg agcaaagaga aaaaaacaaa
    23821 gataaaatcg atgaatttat agaaaataaa attttagaaa aacttttgcc acctttacca
    23881 aagggtatca gcgatgaaaa acaagaagaa tataaaaaca gtcttgaaaa aatgagaact
    23941 aaactaagaa atggcgatct tgatgaaagc actatagaga tagaaatttc gcaaaatatg
    24001 ttcgatacca atcctaacct acctcctgaa atgggtgcaa tgcaagatat agttaaggtt
    24061 ataggtgttg gcagtaaaaa agtcaaaaaa gaaatgaaaa tcaaagacgc taaaaatgct
    24121 ttaaaaaacg aagcaggaga aaaaatccta gatcaagaaa gtatcaaaag cgaagcctta
    24181 aaaagagcgg aaaatgaagg gattattttt attgatgaaa tcgataaaat cgctgtttca
    24241 agcggaaatt caaatcgcca agatccaagt aaagaagggg tgcaaagaga cttacttcct
    24301 atagtcgagg gatcaaatat acaaacaaaa ataggtactt taaaaaccga tcatattctt
    24361 tttatcgctg caggggcttt tcatcttagc aaaccaagtg atcttatccc tgaacttcaa
    24421 ggacgctttc ctttaagagt ggaattagat agtcttgatg ataaagctct ttatgaaatt
    24481 ttaacacgcc ctaaaaattc acttttaaaa caatactctc agcttttaaa aactgaaaat
    24541 ttagaacttg aatttgatga tgaagctatt aaagaaatag cgaaaatagc ttcaagagcc
    24601 aatgaagaaa tgcaagatat aggtgctaga cgcttacata ctgtgataga aaaattactt
    24661 gaagatctaa gctttgaagc tgatgagtat gcgggtaaaa aattcgtagt ggataaaaaa
    24721 atggtagaag aaaaactcgg agatatcata gaaaataaag atcttgcaag gtatattttg
    24781 tgaaaagtgg ctttgttagc atcatagggc gtactaatgc aggaaaaagt actttaatca
    24841 attccttatt agaagaaaaa atcgccctag tttctcacaa acaaaacgcc acaagacgta
    24901 aaattaaagc catagtgatg catgaaaaaa atcaaatcat tttcatcgat accccaggac
    24961 ttcacgaaag cggtgctacg cttaatcaac tgcttgtcca aagtgctatt aaatccatgg
    25021 gggattgtga tgtgatttta tttgtggcga gtgtttttga tagtacaaaa gactatgaaa
    25081 attttcttag tctaaaccca caagtaccac atatcatcgc tttaaataaa gtagatttaa
    25141 ccgacaatgc tacactttta aaaaaactta gcgaatatgc aaaatttagc caacatttta
    25201 aagctatcat tccttattct tctaagaaaa aaagctataa aaaaggctta ttagatgaaa
    25261 tagtaaaata ccttgataaa catgagtatt tttatgatcc tgaattttta agtgcgagta
    25321 gcgaaaaaga actttataga gatttcatac ttgaaagtat ttatgaaaat ttaagtgatg
    25381 agcttcctta tagtagcgaa gtgcttatcc atcgcaccaa agacacacct aatcttttaa
    25441 tcctagaagc caatatcatc accgatacaa actctcacaa gggtatgctt ataggaaaag
    25501 aaggggcaac tttaaaaaga ataggcaaag atgcacgctt taaaatttca aaacttgcac
    25561 aaaaaaaggt acttttaaag cttttcgtaa cagtgaaaaa aaactggcaa aaagatgaag
    25621 aatttttaaa aaaactttta aatgatgaaa attaattcat taaataaaat aaattttata
    25681 aaatctacag atttgcttta tgctcaaaga acaggaatat ccaaagaaga tgaacttttt
    25741 aacaatttaa ctgcagattt taagctaagc aaaccctttg actaccaaat agcttttttt
    25801 aaacataatg aaatttatca ttgtttttta gcgcctgttt acaaattgaa aaaaagtcgt
    25861 ttttgctttc ctgagccttt aatttttcaa gctttgtttg atgaaagatt tattgaggaa
    25921 agtgattatt gtgttttaaa tttatatgat caaactttat atttatattt ttaccaagag
    25981 ggaaaattta tcaatcttaa aaaaatcgaa aatttcaacc caagtaatat ggatttattt
    26041 tttaaacaaa atcgatttat agaactttta aaacactatg aaagcaaatt gctactttat
    26101 caggatttgg atacaatcaa acattacttc tcatctcaaa taaaatgttt aaatctaaat
    26161 gatattcttg ataaaaatag tt
//
LOCUS       DAZAND010000009        25876 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.009, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000009 DAZAND010000000
VERSION     DAZAND010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25876
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.009"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(43..1017)
                     /locus_tag="ACHDOB_000311"
     CDS             complement(43..1017)
                     /locus_tag="ACHDOB_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HFN3325261.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFRAFDEVAMIKKELRSL
                     GVKTVVLNSGVPTTLSALKQNISYEKYEASRVNGKKLYHKDFLNYAITLFHMEEKKAI
                     KEVGAMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            1074..1847
                     /locus_tag="ACHDOB_000312"
     CDS             1074..1847
                     /locus_tag="ACHDOB_000312"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HFN3325262.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPVNLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLKQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYTNLHNAL
                     FSNISHTAFALKELDQDKKTLQAQFEKELQNLKLCAKKGVELGLKVAAGHGLNYKNVK
                     LIVKIKEICELNIGQSIVARSVFTGLKNAILEMKELIKR"
     gene            1844..2938
                     /gene="pdxA"
                     /locus_tag="ACHDOB_000313"
     CDS             1844..2938
                     /gene="pdxA"
                     /locus_tag="ACHDOB_000313"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HFN3325263.1"
                     /translation="MKKLAISIGDINSIGLEILVRSHEELSKICTPFYFIHENLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFIKKENSLEIYSFCLPLGFKVDENFEIKAGEID
                     AKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMILGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKIGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLYSKKDEKFFKKALKDENLQKELLLNFKGKGVYLP
                     YPLVADTAFTKAGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLNPKA"
     gene            complement(2921..3530)
                     /locus_tag="ACHDOB_000314"
                     /pseudo
     CDS             complement(2921..3530)
                     /locus_tag="ACHDOB_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3643..4842
                     /locus_tag="ACHDOB_000315"
     CDS             3643..4842
                     /locus_tag="ACHDOB_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3325264.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHIQLLSNLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKLLVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLAGLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFKKI"
     gene            4898..5218
                     /gene="ciaC"
                     /locus_tag="ACHDOB_000316"
     CDS             4898..5218
                     /gene="ciaC"
                     /locus_tag="ACHDOB_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HFN3325265.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     EEKTSSSKFTNEDIDLSAAREDFRSYAWQKMREDQYKKNEETLLNKLFATIDAGNATN
                     NTKA"
     gene            5398..6420
                     /gene="hemE"
                     /locus_tag="ACHDOB_000317"
     CDS             5398..6420
                     /gene="hemE"
                     /locus_tag="ACHDOB_000317"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HFN3325266.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKGKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVEKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            6417..7319
                     /locus_tag="ACHDOB_000318"
     CDS             6417..7319
                     /locus_tag="ACHDOB_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HFN3325267.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVVLEKNVEFDFLTLTANGEPSLYPHLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKA"
     gene            complement(7316..8512)
                     /locus_tag="ACHDOB_000319"
     CDS             complement(7316..8512)
                     /locus_tag="ACHDOB_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325268.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVAEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFYMQNDFLNFQKKIDVDSVLDLLKEKFETTGQNLTKTS
                     HEKDRYLHLLEENLYQLGNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKILNENVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNVCINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVGDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(8514..10316)
                     /gene="uvrC"
                     /locus_tag="ACHDOB_000320"
     CDS             complement(8514..10316)
                     /gene="uvrC"
                     /locus_tag="ACHDOB_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HFN3325269.1"
                     /translation="MTKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFITTNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKRISREKYLEILDEAMHALLNPSILIKNLEKQMLVLAQ
                     NENYEEAAKVRDQIVTIKDLEVKVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKI
                     ISVNSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVYEEFEDRMLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLPN
                     DIEIFDNSHLQGMANVGAMVTYSANSWDKSKYRKFHLKHKNDYDQMREVLMRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGARDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLAMLVGKKVAQKIKEN"
     gene            complement(10309..10803)
                     /locus_tag="ACHDOB_000321"
     CDS             complement(10309..10803)
                     /locus_tag="ACHDOB_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325270.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAVNKNKNDEKLSKNSYLELSKGEFKNCFEDEKLFKKFEDLRELIKKG
                     SNLD"
     gene            10942..12477
                     /gene="guaA"
                     /locus_tag="ACHDOB_000322"
     CDS             10942..12477
                     /gene="guaA"
                     /locus_tag="ACHDOB_000322"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HFN3325271.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLGLPILGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEVKKDSALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGSDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSGEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVRDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRPSLELLRKADVILLEELKSTGWYDKTWQAFCVLLNIKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEVLENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            12563..14023
                     /locus_tag="ACHDOB_000323"
     CDS             12563..14023
                     /locus_tag="ACHDOB_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325272.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKPVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMIADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRNNRLASLEAQMKTLQSEINLKSNAANADPEKLKA
                     RQERLTKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            14263..15513
                     /gene="purD"
                     /locus_tag="ACHDOB_000324"
     CDS             14263..15513
                     /gene="purD"
                     /locus_tag="ACHDOB_000324"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HFN3325273.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHAKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            15510..15962
                     /locus_tag="ACHDOB_000325"
     CDS             15510..15962
                     /locus_tag="ACHDOB_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFN3325274.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIIGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAIRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            15952..18000
                     /locus_tag="ACHDOB_000326"
     CDS             15952..18000
                     /locus_tag="ACHDOB_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HFN3325275.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKISAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQNYLEEYDKENEHTSLYAVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELQNLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            18070..20229
                     /locus_tag="ACHDOB_000327"
     CDS             18070..20229
                     /locus_tag="ACHDOB_000327"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HFN3325276.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     TYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEIAKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGITALQMDIKLGGIDQEILKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            20226..20708
                     /locus_tag="ACHDOB_000328"
     CDS             20226..20708
                     /locus_tag="ACHDOB_000328"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033958 - DNA-deoxyinosine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006285 - base-excision repair, AP site
                     formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HFN3325277.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(20747..21409)
                     /locus_tag="ACHDOB_000329"
     CDS             complement(20747..21409)
                     /locus_tag="ACHDOB_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HFN3325278.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(21427..22611)
                     /locus_tag="ACHDOB_000330"
     CDS             complement(21427..22611)
                     /locus_tag="ACHDOB_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3325279.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISAVFDVVAFLIACSFVTIYFFIYGRKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAANGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVASNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGLMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            22665..23120
                     /locus_tag="ACHDOB_000331"
     CDS             22665..23120
                     /locus_tag="ACHDOB_000331"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HFN3325280.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDEAYKILSLACKNLLVFLSK"
     gene            23372..24649
                     /gene="porA"
                     /locus_tag="ACHDOB_000332"
     CDS             23372..24649
                     /gene="porA"
                     /locus_tag="ACHDOB_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 major outer membrane porin protein PorA"
                     /protein_id="HFN3325281.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNSKQDHKYRAQVNFSAAIADNFKAFVQFDYNAADGGYGANGIKN
                     DQKGLFVRQLYLTYTNEDVATSVIAGKQQLNTIWTDNGVDGLVGTGIKVVNNSIDGLT
                     LAAFAVDSFMAAEQGADLLGHSNTSTATPNQVPFKVDSVGNLYGAAAVGSYDLAGGQF
                     NPQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDTTHANGNLF
                     ALKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDT
                     GRNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLGGGKKLEAVARVDYKYSPKLN
                     FSAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(24764..>25876)
                     /gene="dnaJ"
                     /locus_tag="ACHDOB_000333"
     CDS             complement(24764..>25876)
                     /gene="dnaJ"
                     /locus_tag="ACHDOB_000333"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HFN3325282.1"
                     /translation="SYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAEDKFK
                     LVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEGFGS
                     SRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGKLQT
                     CPKCQGRGQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELNIPE
                     GVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQAILG
                     ESIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTSLND
                     EQKELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
BASE COUNT         9215 a         4249 c         3958 g         8454 t
ORIGIN      
        1 taattttgat gaaaaatttc attttttcga atttcaaaaa aactaaaatt ttatattttt
       61 catactcgct aaacaaaccc cctcccttaa accctcatca atgactagaa gtttatgttt
      121 atcaaacaaa gcataaaaca gcaaacaacc tgcactcaaa taattttttc tcatcgcgcc
      181 tacttctttt atagcctttt tttcttccat atgaaaaagt gtaatagcat aatttaaaaa
      241 atccttatgg taaagttttt tgccatttac tctacttgct tcatactttt catagcttat
      301 attttgtttt aatgcgctaa gtgtagtagg aactccggaa tttaaaacca ccgttttaac
      361 tcctaaagaa cgaagttcct ttttaatcat agccacctca tcaaaagccc taaaagctaa
      421 atgctttaaa tagggatttg caattaaaaa atgaatttta agttttttat ctttaatatt
      481 tatgataaat ttaggatatt tttttattaa ttttttataa gaaatacaag atttataata
      541 agaatggtaa tttttttcat aaaaactaat aataccaaaa tcaaaacttt taaaactttt
      601 tccaaaagaa agctcacaag aagcccctcc taaatcacaa tatgcaaact ctccccaaat
      661 tttaagcctt cttaaacctg attgcatacc taaaacactg atcttagctt cacttttggc
      721 atctataagc ttaaaatcaa tcccaaattc tttttttaaa tgggcaaaaa tttcatttgt
      781 attgcttgcc tttctaaaag ctgcagtcgc tacagctctc gctttgctta aatcttgctc
      841 tttagctaaa atactcaaag tattttttaa tctttgtatg gcttctttag aaatttctcc
      901 actttgattt agatttttcg ctgccccaat aacaaattca tattctttta atttatttaa
      961 tttttcatcc atttgtactg ctcttaaagt atttgaacca agatctatac ctaacatgac
     1021 tttccttatt tgattttata gtataatagc aaaaaaagtt ctaaaggaaa aatatgcttt
     1081 taggtgtaaa tatcgatcat attgcagtgt taagacaagc tagaatggta aatgatcctg
     1141 atcttttaga agctgctttt atagtagcta gacacgggga tcaaatcact ttgcatgtaa
     1201 gagaagatcg ccgtcatgct caggattttg acttggaaaa tattataaaa ttttgcaaaa
     1261 gccctgtcaa tttagaatgt gctttaaatg atgaaatttt aaatttagct cttaaactca
     1321 aaccccaccg cgttacttta gtgcctgaaa aaagagaaga gcttactaca gaaggggggc
     1381 tttgtttaaa tcatgctaaa ttaaaacaaa gcatagaaaa acttcaaaat gcaaacattg
     1441 aagtttcact ttttattaat cctagtttag aagatataga aaaatcaaaa attttaaaag
     1501 cccaattcat agagcttcat acgggacatt atacgaattt acacaacgca cttttcagca
     1561 atatctctca tactgctttt gccttaaaag aacttgatca agataaaaaa accttacaag
     1621 ctcaatttga aaaagaattg caaaatttaa aactctgtgc taaaaagggc gtagagcttg
     1681 gcttaaaagt agccgcagga catggtttaa attacaaaaa tgtaaaactc atagtaaaaa
     1741 ttaaagaaat ttgtgagcta aatataggac aaagcattgt agcaagatct gtatttacag
     1801 gacttaaaaa cgctattttg gaaatgaaag aacttattaa aagatgaaaa aactagccat
     1861 tagcataggc gatataaaca gcataggact tgaaatttta gtgcgttctc atgaagaact
     1921 aagcaaaatc tgcacacctt tttattttat ccacgaaaac ttgcttgata aagcttcaaa
     1981 acttttaaat ttaaaacttt ttaatgcaaa aatcgtagct tttaaagatg gaaaagacta
     2041 tgaatttaat tttataaaaa aagaaaattc tcttgaaatt tactcttttt gccttccttt
     2101 aggctttaaa gtggatgaaa attttgaaat caaagccgga gaaatagatg caaaaagtgg
     2161 actttatggt tttttaagtt ttaaggcggc aagttatttt gtctatgaaa aacacgccca
     2221 tgccttgctt actctaccta tacacaaaaa agcttgggaa gatgcaggac ttaaatacaa
     2281 aggacatacc gatgctttaa gggatttttt taaaaaaaat gccattatga tattaggttg
     2341 taaagaactt tttgtagggc tttttagcga acatatacct ttagctaagg tgagtaaaaa
     2401 aatcactttt aaaaatttaa gcatcttttt aaaagatttt tacaaagaaa cgcattttaa
     2461 aaaaatagga cttttaggtt ttaatcctca cgctggagat tatggagtta taggtggaga
     2521 agaagaaaaa atcatggaaa aagctatagc ctttgtcaat gcctttttat actctaaaaa
     2581 agatgaaaaa tttttcaaaa aagccttaaa agatgaaaat ttacaaaaag aattgctttt
     2641 aaattttaaa ggcaagggcg tttatctacc ctatccttta gtagctgata cagcttttac
     2701 caaggctggt ttaaaaaact gcaatcgttt agtagctatg tatcacgatc ttgcccttgc
     2761 tcctttaaag gccttgtatt ttgataaaag catcaatgtg agtttaaatt tacccatcat
     2821 acgcgtcagc gttgatcatg gcacggcctt tgataaggcc tataaaaatg ctaaaatcaa
     2881 cactaaaagt tattttgaag cggctaaatt tgcaatcaat ttaaacccta aagcttaaat
     2941 ttagcctaga atcaatcaaa tcttctttag ccaagctgtc tataaaatct tgcaaatctt
     3001 tattggtatt taaactttga gtgagtaaat tttcatattt atcaacttta tttttaaaaa
     3061 tttgctctaa aacttcttta atctttgtat ctttttttgc tctttgcata agttctaata
     3121 aagctttagc ataagcttct tgcatgcaat cacttgcatt gagtaaaggt aaaataggat
     3181 tttcctctgc ttttgtattt tgcatatttt ttatacaaat ttttctttct ttaatcatct
     3241 tttttgaaat tggctttaaa atcttttttc gtctttttat ctgctttttt tgaaatattt
     3301 tgatacaaac tgctatagat gttatctact aaagcaagtt ttttattttc aaattcatta
     3361 cgcacaccaa ttttattgca tatcataagc tcatcatcac ttttgccatc atatttgatt
     3421 ttagagcaat caaaactagg ttttacttca tctttataaa taagctcatc aaaactcaaa
     3481 gcccctaaac tcgccaaact taaaccaagc aataaaataa tttttttcat tatttacctt
     3541 taaaattttt attttatttt aacaaaaata ttttgaattt tttaaggaaa ttaagccttt
     3601 attttattat aatgcgtttt tattttttat aaggaactta aaatgcaaaa ttacaaaaaa
     3661 gctctttttg cactagctct tagtgctttt tgtatgggcg taaccgaatt tgttatggca
     3721 ggagttttgg ttgatgttga agcgtatttt agcgtagatg caaaaaccgc gggctatctt
     3781 acaaccttat atgccatagg tgttgttata ggcgctcctc ttattactat acctttaagt
     3841 cgttttcata gacacataca acttttaagt aatcttggaa tttttgctct agcaaatttc
     3901 attatctttt ttagccaaaa tttctatctt acagcatttg cgcgttttat agcaggaaca
     3961 caacatgggg tattttttgt cattgctacc ttagctgtaa gtgctataac cccagatgat
     4021 aaaaaatcaa gcgctctagc tataatggtc acaggactta ctgtagcctt agttactgga
     4081 gtaccgcttg gaactttcat aggacattat tttggcttta aatttatctt tttacttatt
     4141 tttatcatta caagcttagc attttttgga gtatggcata tgatgcccaa aaatttacat
     4201 cctagcccaa caagtcttaa aaatttaatc cctgcttttt cgcatcaaaa tttgttaaaa
     4261 acttatacta taaccatttg tagttgtggg gctcaatttg ttctttatac ttatttgcaa
     4321 aaattacttg tagaaataag cggttttaaa gtccaagata cagcttatat cttgctctta
     4381 tatggaattt gtgcaatttg tgggaattta tggggcggaa aaatagtaga taaaaaaggt
     4441 gctatttttt ctttgcgtct tattttaagc atacaagttc tagtattttt aagcgtattt
     4501 ctcaccatgc attctaaaat tttaatcatt tttagcgtag ctttgatagg attttttgcc
     4561 ttttcaacca tacctgcgct aaaaatgctt agcattacta aagctaaacg ccacacttat
     4621 aaagtcatag acagcacagt aagtgtgaat gaagcagctt ttaatgtagg catagcttta
     4681 gcaagttttt taggtgggat tgttttagca ggattgggta tagaatttaa tgctttattt
     4741 tcggcacttt ttgtaagccc tgctttgatt tttgccttac tttttgccaa agataaatta
     4801 aattataaaa aatttcaaag aaaaagtttt aaaaagatat aaattggaat agaaattgct
     4861 tgtttattta atgtaaagtt aaataaagga ggagaaaatg gtagtagata atactcaaaa
     4921 aacatcaaat gctatcttta gtaccacaac aaaggttaaa gagaaaaata cttcagcaga
     4981 tgaatttcaa gccacattaa atgaagtaaa aaacaaagaa gaaaaggaag aagaaaaaac
     5041 aagctcaagc aaatttacta acgaagatat tgatcttagt gctgctagag aagattttag
     5101 atcttatgct tggcaaaaaa tgagagaaga tcaatacaaa aaaaatgagg agactttgct
     5161 aaataagctt tttgctacaa ttgacgcagg aaatgccaca aacaatacaa aggcttaata
     5221 tacaaatcaa aactcaaact acacaaacga gaattccaat aattctcgta aaatttctca
     5281 taactctgga taaaatgaaa aaatttatta tttcctccat atgaagaaaa tatagaaaaa
     5341 ttgaccaatt taatttatca aattctgtta taattttgct aaaaacaaag gaaaataatg
     5401 atttttattg atgcttgctt taaaaaacct acaccttaca cccctatttg gatgatgcgt
     5461 caagcaggaa gatatttgcc agaatatatg gaagtaagaa aacaagcggg tgattttctc
     5521 tctttatgca aagactataa aaaagcttct gaagtttctt tacagcctat tgatatttta
     5581 gatgtagatg cagcaatcat tttttcagat atcttagttg ttcctcttga aatgggtatg
     5641 aatttacgtt ttgaaaaagg agaagggcct gtttttgata atcctatttc aaccctagaa
     5701 gacttagaaa aacttgacga tcaaaatgca cataaaaaat taaattatgt ctatgatgcc
     5761 ttaaagctta ctagagaaaa attatctcaa aacaaggctt taataggatt ttgcggaagc
     5821 ccttggacta tagctaccta tatgatagaa ggaagtggaa gtaaaaatta tgcaaagtgt
     5881 aaaaaaatgc tttatcaaaa cccagaactt ttacataaaa ttctaaacaa actaactcaa
     5941 gttttaaaac tttatttaga agagcaaatt aaagcaggtg ctaatgctat acaaattttt
     6001 gatagctggg caagtgcttt agaatacgat aagttttttg aattctcttt taattatatg
     6061 cttgaaattt caaattttat taaaggcaaa tacccaaata tacctgtaat tttattccct
     6121 aaaggcatta gcggttattt ggatagaatc gatggtaatt ttgatgtttt tggggttgat
     6181 tggagcactc cgcttgattt agcacgtgat aaactatcac acaaatacac tcttcaaggc
     6241 aacatggagc cttgtagact ttatgataaa aatgccatca aagaaggagt ggaaaaaata
     6301 ctaaaaacca tgcaaaataa agctcatatt ttcaacttag gacatgggat cttgcctgat
     6361 attcctgttg aaaatgcaaa atattttatc aagcttgtac aagaaagttc agctaaatga
     6421 aaatactctt tggtcctgtt agctcaaggc gttttggaag atctttgggt atagatttaa
     6481 gccctagcaa aaaacaatgc aattttgatt gtgtttattg tgagcttgat ccaaaaaaag
     6541 cccaagaaaa acaggatgaa attatcagca tagataaaat tatctccgaa gttaaagttg
     6601 tgcttgaaaa aaatgttgaa tttgattttc ttacccttac tgctaacgga gagcctagtc
     6661 tttatcctca tttaaatgag cttattttat ctttacgcag cattgctaaa gataaaaaat
     6721 tgcttatttt aagcaatggc acagctgtat tagacgaaga caaatttaat gctttgctaa
     6781 aactagatgt ggtcaaattt agcctagata gtgcagttgc taaaactttt tatcgtattg
     6841 atagagcttt aaaaaacata gatttagaaa aaatgataga aaaaatggca gattttagag
     6901 ctagatttaa cggagatttg attatggaaa ttctagttgt taaagatctt aatgacaacg
     6961 aagaagaatt tgaagcactt aatcaagctt taaaaaaaat catgccttta agggttgatc
     7021 taagcaccat agatagacct cctgcttatg ccgttaaaaa agtaagcgaa gaaaaacttt
     7081 tagaactttc taaacttata gattctactc ctgtactctt agccaaaaga cattatgaag
     7141 gtgaaaaact aagcttcaat gaagaagaat tattaaaaat gcttcatttg cgctcacaaa
     7201 gcgaaataga cattgaagtg aaatttgatg aacaatccaa aactctctta aatcaactta
     7261 tcaaagaaaa aaaggtaaaa attctcgatt tagctggagt taaattttat aaagcttagg
     7321 cctttggtaa atactttcta agtaaagtta taagatcatt tctacttaca tcacttaaaa
     7381 cttcgctcac acaatcaaaa tccccaactt tttcctttga aaaaaagatg atatggcttt
     7441 gtggatgctg ttttttataa gcacttaaca aatttctcat ttgctcaaga tcaaatttaa
     7501 ttaattcata atcaagcaaa atcaaacgat aagtctcctt gcttaattct tgttttaatt
     7561 gactaaaaga atttatacat acatttttat cgcattgttt ttctattata ttaaaaaata
     7621 aggttgcatc aaaatcattt tgtttaaaaa gcaatacatt attttgataa ggggttttaa
     7681 attttaaagt gcaaacctta tcaagcttgt tttgcaaaat attttcaaga tctttttttt
     7741 caaaaggtaa agttaaaaaa tactcataat gtgtattttt atggcgaccc atcactataa
     7801 aatcatagtt tttctttaca ttttcattta aaattttatc cttgataaaa atcaaatgaa
     7861 agtcattaac atcaaaactt aaatttttaa aacaagtgct ttctatgcca aaatacgaaa
     7921 gtaaatttgc aagtaaaaaa ttctcaagct catcattatt aactatagcc acacttgctt
     7981 caaattgcaa aacctttcca tgagatgtcc ctataatgct tttatgatgc tctaaagcct
     8041 catttaattc taatctaatt tgatcttttt gagaatttaa ggcatttaaa atcaaagaat
     8101 taatttcttt attataccct tcatttaagc aacgcattgc attggatata tttccaagct
     8161 gatataaatt ttcctccaat aaatgcaaat atctatcttt ttcatgggat gttttagtta
     8221 aattttgacc cgtagtttca aatttttcct ttaacaaatc aagcacgcta tcaacatcaa
     8281 tctttttttg aaaatttaaa aaatcatttt gcatgtaaaa aattttttga tatattttgt
     8341 ttatatttct attttgtcta aaagcaaaaa taaaaagtgt taaagataaa acaaaaatgc
     8401 tagaaaacat acctattttc agttgttcag caacactatc aagctttgag atatcaatac
     8461 ttaaatacgc taaaattaga ttaaaaataa aaattatccc tgctaatatc aaatcaattt
     8521 tcctttatct tttgtgccac tttcttgcct acaagcattg caagatcttt aaaatcagcc
     8581 ttatatatag attcaaaatt tccataatac gctaaaagtt tttgtataac ccctgaacta
     8641 agtcctaaat ttacaagctt agaactattc aagtcctgtt ttttcttagt attttgatga
     8701 aagctgatag caaaacgatg cgcttcatct cttaatttct gtaagaattg tagtttttta
     8761 tcgttaatac ttaggctaaa ttctcctttt aaggaatgaa ttttatctct agcacctcct
     8821 ttagccctat gtgcttttgc atcgattttt tcttttgaaa tagctaaaat atcgacattt
     8881 gccccactac ttacaatgat ttctttagcc aaatcaagca aagccttgcc tccatctata
     8941 agccataaat caggaggggg tattttatca aagtccaaag ccctacgcat taaaacttca
     9001 cgcatttgat cataatcatt tttatgtttt aaatgaaatt tgcgatattt tgacttatcc
     9061 caagaatttg cactataagt taccatagct ccaacatttg ccatgccttg caaatgagaa
     9121 ttatcaaaaa tttctatatc atttggtaaa ttttcaagct caaaataaga ctttaattct
     9181 ttttgtatag taaaatcatg atttttttgc tctttttcta tatttaaaag ggcattttga
     9241 aaagccaaat cacaaattct tcttttttct cctattttag ggattttaat actgattttt
     9301 ttatcaaacc tttggcttaa aatttcttct aaaagcattc tatcttcaaa ttcttcataa
     9361 acataaataa catttgcaag caaaggaata tccatgctaa aattttctaa aatcagttgc
     9421 ttataaattt catttttatc ccattgtata tcatttttta taggagtaat cttagaattt
     9481 acactgataa tttttccatt ttgcactaca aaacgcaagg ttgaaagcat ggaattttca
     9541 aaagctaaag caaatacttc aaaatcttct aattttgcaa tatctatttc aaccttaact
     9601 tctaaatcct taatcgttac aatctgatct cttactttag ctgcttcttc ataattttca
     9661 ttctgtgcta aaacaagcat ttgtttttct aaatttttta ttaaaatact aggatttaaa
     9721 agcgcgtgca tagcctcatc taaaatttca aggtattttt ccctgctaat gcgtttatcg
     9781 caaggcgcaa gacaacgaga aatttgataa aaaatacaag gggatttaca acttgctttt
     9841 tgctttaaag gatagtataa ataaagcgca tctaaaagct ctctagcgcc tttaaaaaaa
     9901 gggccaaaat atttaatttt gctttttttt actaattttc tagtgatctc aaagcgtgga
     9961 aattcttctt caaaatccac ataaatataa ggataagttt tatcatctct tagtaaaata
    10021 ttatattttg gatgcagttg tttgataaaa gaattttcca aaatcaaagc atcggcttct
    10081 gaattagtag tgataaattc caaatgcact gtttcttcaa tcattttttg aattcttaaa
    10141 gaatttcttg ggtttgcatg taaatttgga gtaaaagcga aataagattt gacacgattt
    10201 ttaagatttt tagccttacc tacatataaa agctttcctt cttgattaaa atattgatac
    10261 actccagcac tattaggaag agtttttaac tcattttcta aattctcttt agtcaagatt
    10321 agaacctttt tttataagct ctcttaaatc ttcaaatttc ttaaataatt tttcatcttc
    10381 aaagcaattt ttaaattcac ccttagaaag ctccaaataa gaatttttag agagtttttc
    10441 atcatttttg tttttattta ctgcataagt gtatttttga gaaaagattt ttatatcttt
    10501 tatatcaaca aatccactta aaggatattt ttgtccatac gcttttatga gaaatttaat
    10561 ataaattttg ctatcatcat gatttaattc ttgataagct gctggatgta aggttattat
    10621 atttaaaata tgatttttta cataaatttt agcaatcaaa cgttgcttag caagcggaaa
    10681 agaacttaaa aaatctttgc aaaaaaataa ggtttttaaa ggcttataat gaggtttatc
    10741 catcaattca ttaataacag cactagcgtt tttagtcatc ttaatattat ttctttttcc
    10801 cataagatga ttttagcatt tcttttctta attttcttct gtgcttgcgg atataaaggc
    10861 aaccctcaat acacaagcta tgaacaaaat ggttcggtaa aaaccattaa aaaatacgaa
    10921 caattacata ggtggtaaat aatgaaaaaa gcagatattt tagttttaga ctttggctct
    10981 caatacactc agcttatagc aagacgctta agggaacaag gagtttatgc agaaatttta
    11041 ccttttaatg tgagcttagc tgatattaag gcgaaagaac caaaaggtat tattttaagc
    11101 ggaggtccag caagcgtata tgcaactgat gcgtattttt gcgataaagg tatatttgac
    11161 ttaggtttac ctattcttgg aatttgttat ggtatgcagc ttatggcaca tcattacaaa
    11221 gctacagtag cacctgcagg acataaagaa tacggcaaag caaacataga agttaaaaaa
    11281 gatagcgctt tgtttaaaaa tcttccaaaa aaacaaactg tttggatgag tcattctgat
    11341 aaggtagaaa atttacctca aggttttgaa gttttagcca caagtgaaaa tagtcctttt
    11401 tgtgtttttg gaaatgaaga taagaaattc tttgctctac aatttcaccc agaagtacaa
    11461 cacagtgaat ttggcaaaaa tatcttaaaa aattttgcta aatacgcttg caattgtgaa
    11521 agcgtttgga atatgggttc ttttgcaaaa actcaagcag aaaaaatccg tgaagaagta
    11581 ggcagtgata aagtgctttg cgcagtaagt ggcggagtag atagtagcgt agttgctgca
    11641 cttttagcta gcgctataaa agagcaagtt atagtagttt ttgtagacaa tggactttta
    11701 agaagtggag aaaaagaaca agttgaattt atgtttaaaa ataccttagg tatcgatctt
    11761 atcagcattg atgcaagtga aattttccta agtcgcttgg ctaatgttag agatcctgag
    11821 caaaaaagaa aaatcatagg aaataccttt atagaagttt ttgaagaaga agcaaaaaaa
    11881 cataaagatg taaaatatct cgctcaaggc acactttata ctgatatcat agaaagttct
    11941 gttgtaggtg caagcaaaac cattaaaagc catcataatg tagggggctt acctgaaaaa
    12001 atgaatctta aactcataga gcctttaaaa gaaattttta aagatgaagt gcgtgcttta
    12061 gggcttgagc ttggacttag caaagaagtg gtttatcgcc atcctttccc tgggccaggg
    12121 cttgctatac gcattatggg agaagtaaat cgccctagct tagaactatt gcgcaaggct
    12181 gatgtaattt tactcgaaga acttaaaagt acaggttggt atgataaaac ttggcaagca
    12241 ttttgcgtgc ttttaaatat taaaagcgtt ggggttatgg gggataaccg cacttatgat
    12301 aatgcagttt gcatacgcgt tgtagatgca agcgatggta tgacagctac tttctcgcat
    12361 ttaccttatg aagttttaga aaacataagt cgccgtatca tcaatgaagt agaaggtata
    12421 aaccgcgttg tttatgatat ctcaagcaaa ccacctgcaa ccatagaatg ggaatgatcc
    12481 attttttcta gctcttattt ttattataaa atttttataa aaataaggct agaatttatt
    12541 caagaaattt caaggaagaa atatgcatgg aaaaatagct atttatatgg attctacagg
    12601 acgtggaacc gttacaaact cagcaaatac cttttttgac ttcaatcgcc aaatttggaa
    12661 tgataaaaaa agtatgccaa gtgttggtat gcttgtggaa tttagaactc tttctagcga
    12721 aaaaaaagca gaagacggca agcccgttca aacaagcaaa accataacag gtataaaacc
    12781 ttcaaaattt caagaattta aagaagggga ttttatcact gagcatgatt tttggaaaac
    12841 tgataatgat gatgaattag aagacttgca aaactcaaga agaagtgctt atataacaga
    12901 actttataga acgacagact ttgacactat agaaaaaatt cctctttctt ttactatacc
    12961 tcaagctata caaaaatatt ttgctcatga aattttatcc gtagaaacac ttcaagccaa
    13021 tctacaagat gaaaaggaaa ttccctgcat acttgattat cttatactta aaagattttt
    13081 atttaaagct tatgatactt taatttttat ggataatagc atagaccaaa cccaatttag
    13141 cgcattaaaa agcatcatga tgcatttaga gaattcatac aagcaaatga tagctgatca
    13201 aaaaccaaat atcactaaaa tttttaacga aactttttta tctttgcagt gtcattacca
    13261 agctttagta gccaccatag atacaagaaa caatcgtcta gcctcacttg aagcacaaat
    13321 gaaaacttta caatctgaaa taaatcttaa aagcaatgcg gccaatgcag accctgaaaa
    13381 acttaaagca cgacaagaaa gattgactaa actacaaaaa gaagcagaat actacagaac
    13441 aacactaaaa agacttgatg ctataaggga agatttttat aagaaaaatt acaatatttt
    13501 cgaaaatgct tttaaacttt cacgagaaaa gctctttaaa aaaattgtca caggtttaaa
    13561 tctatgcgca accataatgg atgttaaaat ttggcactta tctttaaaat catcaggggt
    13621 taaaaattct tattttacta tgagtaatat agaaaattct ttctgttctc tttcttttgc
    13681 agaacattac ttaagtcgct taaataaatc cgctctaaat ccttttgatc aaaaactttt
    13741 agtgtatatt caaaaaatca caaaagaaca aagaaaaaaa tttttagttg tcacatcgga
    13801 tttagattta ttatgcaaat taaaaattga aaacttttca caaaatccgt attatttagt
    13861 aaaatacgca cctaaaaaag taaattatca gtctttaatg cgtgataaca cctttgatat
    13921 agtctatatt gatgaaaaac atgtttggga aaatgttgcc gatattattt tacaaggaaa
    13981 gcattttgac aaatcaggaa aaaccaaatt taaactgatt taagacatag aaatttaagc
    14041 taaattaagt tataatttcc ttgcctaaac agtttgtggt atttaaagtg attcaacaca
    14101 tttttattaa ctgcgattgt gtgatttacc gtgttctgtg gcatcgtttg agctttgaaa
    14161 aaagcgagaa gttgcagcct ttaaaaatta cctagcggtt ttctttgact ttttggggtc
    14221 aatctttgtt aaacggctgt ttgggtttaa aaggagatat aaatgaaaat aatgattttg
    14281 ggtagtggcg caagagaata ctctattgct ttagccttaa gaagagtaga caaaaattta
    14341 gagttttatt ttgctcctgg aaatggcgct accgaaagtc ttggaacaaa tttaaaccta
    14401 aaagatccag tagttttagc aacctatgca aaagaaaaag gttttgatct ttgtatagta
    14461 ggaagtgaaa gttttttagc tgaaggggtt gtagatattt ttaaacaaca aggacttgct
    14521 atttttgggc caagcaaagc tgctgcaatg cttgaaacct caaaatcttt tatgaaaagc
    14581 tttcttaaaa aataccgcat caaaacagcc aaatttttaa acacaaatga cattgaaaaa
    14641 gcaaaaaatt ttatatatag tttaacccct cccatagtag taaaagctga tggactttgt
    14701 gccggaaaag gcgttattat agctaaaact catgaagaag ctatagaaga aacagctaaa
    14761 atgcttagtg gagaaagctt tggagatgct ggaaaactcg ttgtaattga agaattttta
    14821 gacggttatg aattaagcat ttttgcagta tgtgatggca atgattttgt tttacttcct
    14881 gcagcacaag atcacaaaaa attactcgat aatgatcaag ggccaaatac tggtggaatg
    14941 ggtgcttacg cccctagctc tttagcgaat gaaagtttgc ttagaaaagt tcaaaaagat
    15001 attattttac cgactttagc aggtatgaaa aaagaaggag cggaattttg tggcgtttta
    15061 tttataggcg ctatgatcgt tggaaataaa ccttatgtat tagaatttaa tgttcgcttt
    15121 ggcgatcctg aatgtgaagt tttaatgcct ttaatcgaag atcctttaga gcttatttta
    15181 gctgctactc aaagacgctt aagacacgcg aaaatcaaaa tcaaaaaaga atttgcagta
    15241 ggggttgtat gcgcgagtga aaactatcct tacaaaagtt caccaaaaag tgaaattact
    15301 gtaaataaca ttcctgaaaa ctctcatatt tcttatgctg gagtaagcct agaagatggc
    15361 aaattaatgg ctgatggtgg aagagtttta gtttgcgttg gcacaggaaa aagtatagaa
    15421 gaagcgcaaa aaaatgctta taaactttgt gataatgtaa atttcaaagg aaaacaatac
    15481 agaaaagaca tcgctcatca ggttcttaaa tgaaagaaaa tttacaagac cgcttagagc
    15541 gtgaaaatct aaaaatagca agttttggaa aaagagttct agctttttta atcgatgata
    15601 tggttatttc tttgattgta tttatcattt tttatgatcg tctaatccaa gcaaaagatt
    15661 tatttgaaac gactcaaatt ataggaaatt tttatcttgg cttcatcttg cttcatttta
    15721 gctatcaagc gatttttact tatctttatg gggcaagttt gggaaaaata ttatgcaaaa
    15781 ttatcatctt ggatgaaaat cttctcgaca aacccaatct catccaaagt tgcatcagat
    15841 ctgccataag acaagttagt gctatggcgt ttatgcttgg gtttgcttgg gctttaagca
    15901 atgatttgcg caaagcttgg gaggattatc tagcaaggac aatagtagtc gatgtggcgt
    15961 aaattttccc tattgctagg aactagcata gctttaaatg cagcacaagt tgatatttac
    16021 gctcttgatg caaaaaaaga aggtgatatt cttactgcaa acaatgatgt tattattttt
    16081 tctgattttt atttcatcac tgccaataaa gcaatttaca atgaaaaaac cggagatgtt
    16141 gagctttttg gcgatgttaa catcctaagg ggacaaaacg aaagatcaca ttctgattat
    16201 gctaaaatca acctaaattc caatcaagcc gattttagta attttttctt ttccaataac
    16261 aatcttgaag tatggtttca aagcaaaaca agccatctaa atgataaagt ctttgaaagc
    16321 aaaatttcag cagtttcaag ctgcaatgtt gaagatcctg attgggaaat tcgtttttca
    16381 aaaggctggc ttaaccggga aaccaatttt gttcatcttt acaatgcaag attatatgtt
    16441 aaaaataccc cagtttttta tctaccttat tttggattta gcgctgatac tcatagacaa
    16501 agcgggcttt taatcccaaa aatcgtttta aaaagtagcg aaggcttata ctatgaacaa
    16561 cctatttata tagccactca agaaaattgg gatttagaac ttgatccaca aattcgaaca
    16621 aaccgtggtt ttggacttta ttctacttta agatttcttg attctccata ttcaacagga
    16681 gaattaaatt ttggtgcttt tagggaaaat agctcctatt ttcacgatga aaatttgaaa
    16741 aatcaaaccc actatggaat agaactaaaa tactcaagag atgatttaat caaatcttta
    16801 ctcagtgata attttcaaga aggcctatgg atagatgcaa cctatctcaa cgatgtggat
    16861 tatttaaatt taggaagtag ggattatcga gatcttaact cgcttgtaac ctccaaaatc
    16921 aattattttt tagccgatga aaacaatttt tatggagctt atgcaagata ttatatcgac
    16981 acatctaaac ttagcaacaa tacaacctta caagaatatc caagctttca atatcataga
    17041 tttttaaata acctttttga tgaacgcttg cgttattcat ttgatgcttc atttcataat
    17101 ttttaccgac ctgctggttc ttatgcaaat gagctaaatt tagacttgcc tatctcgtat
    17161 cacaacgctt tttttggaga ctttttacac tttactttta cagaaagatt ttatgcttct
    17221 tttgtaaatt atagcaacga tcccgaaaga aaccatgagc attatttcag aaacactcat
    17281 gattttaatc tctacaccga tctttcaaaa gcttatgaaa atttctttca tactttaaat
    17341 ttaggggtga attacatttt accaggagca aaatcaggta aaatcacgca aaattatctt
    17401 gaagaatacg acaaagaaaa cgaacataca agtctttatg ctgtgcaata tttctataac
    17461 aacgaaggac aaaaaaaact caaacacaga atttcacttg actatctcaa taaacaaaat
    17521 gaattctatg aacttcaaaa tcttttaact tattatttta atgaaaacat caatcttaac
    17581 agcgaagtgc tttactctta tgaacaaagt cgctttacca atgtcatcag ccaaatagaa
    17641 gtcaatacaa attcaaaatt taattggatg ttttctcatg cttatcaaaa cgatgagtat
    17701 ggaaaatata gctttattgg cacaagagca aattatattg ccacacctaa ttacaattta
    17761 tttggtggaa tttggtttga tactcaaaga gctcatgcaa acatgtggga acttggctat
    17821 acctaccaaa gaaaatgttg gaactattct ttaatgtata gagaaagaat cgatccacaa
    17881 ctcacaagtg gtggcatcac agctaaaaat caaagcggag tttattttat tttcaacttc
    17941 tatcctttag gaggagtaaa atacgatttc tctttagcag aaagtgaaaa caaaatttaa
    18001 aaaggatgaa atttgctaaa tattttaaaa aattttacga atttattatc tggtaaaaaa
    18061 ggaaaaataa tgcaatacag catagaaatt aacaaaaata cagaaatatt tgatatagac
    18121 aaagtcgcca aacaagctgc cggtgctgtt ttaatgagac aaggcaaaag cgttgttcta
    18181 gctacagttg caagagaaga aaaacaagtt gaagaagatt ttttacctct aaccgtccaa
    18241 tacatcgaaa aagcttatgc cgcaggaaaa atccctggtg gttatgtcaa aagagaaacc
    18301 aagccaagcg atgcagaaac cttaacagcg cgcattattg atagaagctt acgccctctt
    18361 tttccaaaag gctatactta tccgactcaa atcgttgtga tggttctctc agctgatcct
    18421 aaagtagatt tgcaagtaat gagcttaaat gccgcaagtg tggcacttta tcttagtgat
    18481 atacctatga aagctccagt atgtggtgtg cgtataggaa agatagatgg aaatttcata
    18541 ctcaatccaa acaatgagga acttcaaaat agcaccctag atctctatgt agcaggtgta
    18601 aaagatgagc ttttgatgat agaaatgaga gccttacctg atcaaaaaga aaatgaaatc
    18661 tttatcgaag ctccttatgc tgatgtttta actcaaacca cttcacaaaa tatgaatgaa
    18721 cttagtgaag atgaaatttt agaagctcta aatttagctc aaaaagctat attaaatggt
    18781 tcaaatgctt atgaagaagc ctttagcaaa cacaaaaaaa attctcaaat cgaactaaaa
    18841 aatgagattg aacatcctga aattttagct tttatagaaa ataatttcca aaaacaaatc
    18901 aaagaagcca tcaatcaaat ggcaaaaagc gaaagagcga gcgaattaaa taaaatcgct
    18961 aaagaaattt taaatcttga aatcgctaaa gactggagcg aagaaagtgt cttaaatacc
    19021 ttagctaaag tcaaacgcaa acttattcgt gagcaaattt taaatgaagg caaaagagct
    19081 gatggtagaa gtttaaacga ggttcgtcct atcagtatag aaaccaatat cttgccaaac
    19141 gctcatggct cttgtctttt cactcgtgga caaactcaag ctctagttgt tgcaacctta
    19201 ggcggagaaa acgatgctca aatgatagac ttgcttacag aaaaaaatcc tataagcgaa
    19261 cgctttatgg taaattataa ttttccaggt ttttcagtag gcgaagcaag tcctatcaaa
    19321 gctccaggaa gaagagaact aggacatgga aatttagcca aaagagcact ttatccaagc
    19381 gtggatgaaa actatcctta tgtaatccgc ttagtcagtg aaattttaga aagcaatggc
    19441 tcaagttcta tggcaacggt ttgtggcgga tctttagcct taaaagcagc aggagtgcca
    19501 agcttaaaac ttgttgcagg agtagccatg gggcttatct ttgaagataa caagtatgct
    19561 gttttaacag atatcatggg acttgaagat catgatgggg atatggactt taaagtagca
    19621 ggaagcaaag acggcattac ggctcttcaa atggatataa aactaggtgg aatcgatcaa
    19681 gaaatactaa aacaagcttt ataccaagcc aaagaaggaa gaattcacat tctaaatatc
    19741 atggaagaag ccgccaaaga aatcatagtc aatgaagaag ttttacctaa acttgagctt
    19801 tttagcgttg atccttcaaa aatcgttgat atcataggac aagccggaaa aaccatcaaa
    19861 gaaatcgtag aaaaatttgg cgtttctata gacttagatc gcgaaaaagg tgaagtaaaa
    19921 atagcaggta gtcaaaacga acaaatcaaa gccgcaaaag actacatcat aaacatcaca
    19981 agctctcaaa aaggaactaa aaaaggctct aaagacaaag atatatcagg ctttgaactt
    20041 gggcaagaat ttcaaggtat tgttaaaaaa atcgctcctt ttggagcctt tgtggaactt
    20101 aaaaatggtg ttgatggttt attgcatagt tcaaaaagca agcatcttaa tttaagcgaa
    20161 aaccaaagct taaaagttaa aatcagcgaa attaaaaacg gaaaaatttc tgtggatttg
    20221 tgtgagtgag tgaatttcta actcatcctt ttgagccttt ttttgacaaa gattctaaaa
    20281 tcttaatttt aggatctttt ccttcggtaa aatcaagaca agatggcttt tattatcaac
    20341 acccaagaaa tcgtttttgg cctatactag aaacactttt tgatgtaaga ttagaaaata
    20401 tcacagaaca acaagccttt ttaagaaaaa aacatatcgc tctttgggat gtacttcaaa
    20461 gttgcaagat aaaaaattca gatgataaaa ctataagtta tgcaaaagcc aatgatttaa
    20521 gcccgatcct ttctcaaacc aaaatccaag ccatttttac tactggacaa agtgcttata
    20581 aattttttat taaattccac cctcgcttaa aagccatagc cctaccctca acttctcctg
    20641 caaatttaaa tttttctttt gaacagcttt tacaaaacta tgaaataatc aaaaaattta
    20701 caaaataaca aactaagcat tacccccaag taaaacaaga aaaaagctag ttaatatcta
    20761 gcttttgcgt gttatccttg aattcaaatt ccactctctt agctccaaaa cctttagcaa
    20821 tagcttctaa agtatcctta gcacttttat gaattttgct ttctaaattt tggataagat
    20881 ttaaagacaa gtctttaacc tcatctttgg cttcttttat gagtttgttt ttatcacttt
    20941 cgctaaaact aatccccgta ctattgatag aatcaggcag taaaaaaggt aaaaatttag
    21001 catttttttc atcataaaat ttcatatcta tgatgctgtg tttgtatcta cactctggca
    21061 tgatgatctt ataagcatcg tcccctaaag gcaaaatatc aaagttttta tcccttaaat
    21121 catacaagaa agtgatctca aattcaaaaa tcaaagcaat ctgtctttca ctcaaagacc
    21181 atcctaaaag atttttccaa attccattaa aagcgctatc ttttttagtg acaatctctt
    21241 tactaaaaac ttgaaaaaca cttaattctc ctatggattt aagttgcatg atatcgctaa
    21301 aactttgcgt gcttttttct tctattttag ggcttttata ctgcctaaaa agcactacaa
    21361 acaaaagcac aagtaaaatc atcactaaaa caaataaaat catttccatt ttaaaccttt
    21421 ctaaatttat aaaccttgat ttgaaaagat atattttttc tcaaacgcca agaaaataaa
    21481 agcattaatg ataaaaatca aacacacaaa agtaaaaaca aattccacgc taaaatgaga
    21541 agccataagc cctccgccaa aagcaccgca aaaatttccc aaaaattgac aagtttgatt
    21601 aaaaccaaaa atcacactta aatttttagc actcacactt tttttaagca aggcattcac
    21661 acaaggcaaa agccctccaa gtcctacacc tataagtaaa cgcacgaaaa taagcgtata
    21721 aacattactt gctacagcct gcaagtaaaa gcaaattcca caaaatatca aagctccaaa
    21781 aataatctta ctaggcccta tcttatcggc gatttttcca agttttggtg cgaaaaaaag
    21841 attgctaatc ccatttgcag ccaccactat acccgcccaa agagccaaat ttccaccttg
    21901 atgaatttgc tcaacataga tacttaaaat cggcatcact ccaaaagtac caaattgtat
    21961 cacaaaagta gtgataaaaa gaacgatgat aagggttttg ttttctttca ctttttgagt
    22021 atttttcttc gcctcttttt gaatttttct cccatagatg aaaaaataaa tcgtcacaaa
    22081 agaacaagcg atcaaaaaag ccaccacatc aaaaaccgca ctaatgctaa aaaattcagc
    22141 cacaaagcca ccaaacaaag gcccaagtaa acttccactt atagaagccg tagaaagagt
    22201 tcctaaagca taagccactt tttctttagg cgctatcacg gcgataaaca caacagcagc
    22261 agaagtaaaa cctgaaatta tccctgttaa accccgtaca aaaaccactt ctaaagcact
    22321 atgagcaaag ctaagccata aggttaaaac ggacattcca aaacttgcac gaagaagcat
    22381 atttttataa ccatactttg cacccaaaaa agcccacaaa ggtgaaaaaa cagccataaa
    22441 aagcggagtg atcccaaaag caagtcctga ataaaacgct atctcgctcg tatcaacatg
    22501 tcctagttct ttgatataaa aaggcaaaat cggagcgatt tgactaagcc ccatacttgt
    22561 ggtaaaaaca ccaaaccaac acacaagcaa agttctattg aaattttcca tggatttatt
    22621 gtatgatatt ttttataatt tttaattaaa actcaaggat aaaaatgaaa aaaatactct
    22681 ttatatgctt aggcaatata tgccgttcgc ctatggcaga atttatcatg aaagatcttg
    22741 tcaaaaaagc aaatttagaa aaagaatttt ttataaacag tgctggaact tcaggagaac
    22801 acgatggaga aggtatgcac tatggcacca aaaacaagct tgctcaactt aacatagaac
    22861 acaaaaactt cacaagcaaa aaactcactc aaaagctttg cgatgaaagc gattttttaa
    22921 tcaccatgga caattctaac ttcaaaaatg ttttaaaaaa cttcaccaac acccaaaaca
    22981 aagttttaaa aatcactgat tttagtccta gtctaaacta cgatgaagtt cctgatcctt
    23041 ggtatagtgg gaattttgat gaagcttata aaattttatc cctagcttgt aaaaatttac
    23101 ttgttttttt atcaaaataa tttaaaacaa ctatatatta cttctcgttt actttttagg
    23161 cttatacttc taaacgaacc gaaaaacatt cataagaaaa actccttaaa attacacgcc
    23221 tagcttaaat ccctttagct aggcttttct ttagatgttt ttatccttcg gatttaaaat
    23281 ttttactatt ttaagtgctt cttaagaaaa aactccaaat ttatgtgcta caattacgat
    23341 gttttattaa tttttgacaa ggagaattct catgaaacta gttaaactta gtttagttgc
    23401 agctcttgct gcaggtgctt tttcagcagc taacgctact ccacttgaag aagcgatcaa
    23461 agatgttgat gtatcaggtg tattaagata cagatacgat acaggtaatt ttgataaaaa
    23521 tttcgttaac aactcaaatt taaacaacag caaacaagat cacaaatata gagcacaagt
    23581 taacttcagt gctgctatag ctgataactt caaagctttt gttcaatttg actataatgc
    23641 tgctgatggt ggttatggtg ctaatggaat aaaaaatgat caaaaaggac tttttgttcg
    23701 tcaattatac ttaacttata caaatgaaga tgttgctaca agcgtaatcg ctggtaaaca
    23761 acaactaaac actatctgga ctgacaatgg agttgatggt ttagtaggaa caggtatcaa
    23821 agtagtaaac aacagcatcg atggtttaac tctagctgct tttgccgtag atagcttcat
    23881 ggctgcagag caaggtgcag atttattagg acatagtaat acttcaacag caacaccaaa
    23941 tcaagttcct tttaaagtag attcagtagg aaatctttac ggtgctgctg ctgtaggttc
    24001 ttatgatctt gctggcggac aattcaaccc acaattatgg ttagcttact gggatcaagt
    24061 agcattcttc tatgctgtag atgcagctta tagtacaact atctttgatg gaatcaactg
    24121 gacacttgaa ggtgcttact taggaaatag ccttgatagc gaacttgatg atacaacaca
    24181 cgctaatggc aatttatttg ctttaaaagg tagcattgaa gtaaatggtt gggatgctag
    24241 ccttggtggt ttatactacg gtgataaaga aaaagcttct acagttgtaa tcgaagatca
    24301 aggtaatctt ggttctttac ttgcaggtga ggaaattttc tatactactg gttcaagact
    24361 aaatggtgat actggtagaa atatcttcgg ttatgtaact ggtggatata ctttcaacga
    24421 aacagttcgc gttggtgctg acttcgtata tggtggaaca aaaacagaag ctgctaatca
    24481 tttaggtggt ggtaaaaaac ttgaagctgt tgcaagagta gattacaaat actctccaaa
    24541 acttaacttc tcagcattct attcttatgt gaacctagat caaggtgtaa acactaatga
    24601 aagtgctgat catagcactg taagacttca agctctttac aaattctaag aagctttcaa
    24661 gtctaacttc aaggcggggt tttgctccgc ctttttttat gcctgatttt taaaacttaa
    24721 atttatataa aaaattttcc caagctaaaa cgctttagga aaattaagac ttaaaccaat
    24781 tagtgatttt ttcaaaaagc cctttttgct cttgatgcat accatctttg atgccaaaac
    24841 tttcacttag tttttctaaa agttcttttt gttcatcgtt taaagaagtt gggaatttga
    24901 tagaaatttg aacgatttga tttcccatgc gagaactatg aacatctttt accccttctt
    24961 tttcaagaac aaatctttgt ccatctttag caccctttgg taaatttaag gtcgcttcac
    25021 cgcgtatggt gggtactttt atactctctc ctaagatagc ttgagtaaaa aacactggaa
    25081 attctatata tatatcatca tcatctctga taaaagtatc atcttcagcg gcgatgatct
    25141 taacatacat atcccctcta gtaccatttt ttaagatatt acctttagca ttgacacgaa
    25201 gcttcatacc tgtatctaca ccttctggga tattaagctc gacactatct ttgctttcat
    25261 tataacccaa acctttacaa tcactacatt tttcactagc tttttctcca attccttgac
    25321 aatcagggca agtttgtgca aaagtgataa aaccttgaga aaccccaacc tgtcctctac
    25381 cttgacactt tggacaagtt tgaagctttc catctttagc ccctgttcca ttacaagttt
    25441 tacaagagca tttataagta aagtctatat ttttcttaca accaaaaacc gcttctttaa
    25501 aacttaattt taaattaacg ataaaatctg aagggatttt ctcatcattt gaactttttc
    25561 tacgacgcga tgagccaaag ccttctccaa aaaaactaga aaatatatct cctaaatcct
    25621 caaaaccacc aaaacctgag ctactagaac caaatccacc gccttttaaa gcatcttttc
    25681 cgtatctatc ataaatagct cgcttttcat cattgcttaa aacttcatag gcttcattaa
    25741 caagcttgaa tttatcttct gcttctttat caccttggtt tctatcagga tgatatttta
    25801 aagccatttt tctataggct ttttttatgg tttctttatc agcattttgc gtgatttcaa
    25861 gaatttcata ataact
//
LOCUS       DAZAND010000010        25179 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.010, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000010 DAZAND010000000
VERSION     DAZAND010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25179
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.010"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1518
                     /locus_tag="ACHDOB_000334"
     CDS             <1..1518
                     /locus_tag="ACHDOB_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325283.1"
                     /translation="NKITFYDAVLFGEIYGGRTLQGNAEKNSIEVYHFNSLDHLNKNI
                     KTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNFYGKNYYNLYGGFATEGANFNV
                     IDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNILSIKDSVISLPLYAFITSETTL
                     DGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSNNKINYNLIQSLTEASSLGKGS
                     KIILKATQNANNNLIKLKDCSSAAVESSCIIKADKESAFNKIIINNTAFSTASDKRQG
                     YVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAPSGTSDISNFKSYNNTLYLGGE
                     LNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDFSKNNRLIIDTQDVKSEVVNNF
                     ENFTFILPNKIKNPILTIEKLINLPANGSMEILTKNKPTKGKYILIQSDVGIYDGDNR
                     LLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNVNFSFEVSDDAKIIYINIL"
     gene            1530..3224
                     /locus_tag="ACHDOB_000335"
     CDS             1530..3224
                     /locus_tag="ACHDOB_000335"
                     /inference="COORDINATES: protein motif:HMM:NF017658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HFN3325284.1"
                     /translation="MKKMSKHIVLSFAVSSLLFSQAYALPQGGKFTHGTSGTIHTSGN
                     TVTITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNIAYQKDASKIDGALNGGNNN
                     IFLVNPMGVLIGKTGTITAGKFVASTTPLSDDNVKTFLEKGAGFSPAFDVSKQGNIIN
                     LGKINADNIVLIGNKVEIGVGAELAGQDGQTNAKTAHLIGNYVYVSVGKDKENKNTIK
                     IDKDGFKGTAIVEGFMQRDMTSFANDKYQFGDFGTILKSSCNGKESQNFYKAITIGGW
                     ENDKNIQEWILFSNGWNKDELNGIFKDDLTTVRLVSDIDFGYKNAVDPVGASKYAFSG
                     IFDGGNYTLKNILINAQNTDKGWNTGIFGKVEGKDGNNKAKIYNLNVDGLKFSGKTNS
                     GGAFVGQSSNADFSNIHLKNIGDLIFFDPNSKNETSGFLYGGGFVGYAKSGSSFNRIS
                     LDNFSKIALQPEGKFSSAYIDIYLGGFAGYSEGSNFSNILLNNIGGVTILGSETGGNI
                     FAGGFVGYAGDKSYFSQIDLKNIGSVQADGKTFVKHAGAGGFAGAINGTNSFEKFL"
     gene            3806..4719
                     /locus_tag="ACHDOB_000336"
                     /pseudo
     CDS             3806..4719
                     /locus_tag="ACHDOB_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856939.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4843..6531
                     /locus_tag="ACHDOB_000337"
     CDS             4843..6531
                     /locus_tag="ACHDOB_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0046930 - pore complex [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HFN3325285.1"
                     /translation="MRKILVVLVLLQVFSHAEELNNNKIRELIESSPEANEPQNKNLK
                     NTLKNQKSPVNFKEQNTTNITNSQTDQNEAKVFVREYVLHIDNKDLTFKKLRISEKEI
                     QDAIAEYRNQELSLQNLKDITNIIAYYCQVSGYPSATAYIPPQDLSSNKVQINIAFGT
                     LGKVIIKNNSGVRDYALESKLNKNLKGKVITTKNVENEIYKINEIYGIQTNANLQSGD
                     GYGESDVIIEVNKGDSATLTLYSNNYGTKETGRFRAGMSQSLNNIARQGDNLNFYLQD
                     SDENQIDYGINYSTFIGNLKITPFATQGHYVLGGIYRNLGFYGDSMNVGVNFSYPVFL
                     YTEYSLYLVSGFTHKKIKDYYLDGLVSNEKASNSVNLGIEGTYKGLENNVLSYTLNFT
                     YGNVENDGDSSGFNGVNLGNFGKMNLNLSNEYQFQERLTHIFQLNYQKVIGGAVLDSS
                     ESVSLGGPYGVRAYLEGEGSADNVVSGTLGIRFQTPLEGLYLTPFYDIGYSWYENKEY
                     QSENHYFMDAMGMQILYTRSANFYVKMDAARAVHRFKHDGEHRARVYVSLGKYF"
     gene            7042..8554
                     /locus_tag="ACHDOB_000338"
     rRNA            7042..8554
                     /locus_tag="ACHDOB_000338"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            8657..8732
                     /locus_tag="ACHDOB_000339"
     tRNA            8657..8732
                     /locus_tag="ACHDOB_000339"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8690..8692,aa:Ala,seq:tgc)
     gene            8741..8817
                     /locus_tag="ACHDOB_000340"
     tRNA            8741..8817
                     /locus_tag="ACHDOB_000340"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8775..8777,aa:Ile,seq:gat)
     gene            9353..12259
                     /locus_tag="ACHDOB_000341"
     rRNA            9353..12259
                     /locus_tag="ACHDOB_000341"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            12534..12650
                     /gene="rrf"
                     /locus_tag="ACHDOB_000342"
     rRNA            12534..12650
                     /gene="rrf"
                     /locus_tag="ACHDOB_000342"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(12831..14039)
                     /gene="murD"
                     /locus_tag="ACHDOB_000343"
     CDS             complement(12831..14039)
                     /gene="murD"
                     /locus_tag="ACHDOB_000343"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HFN3325286.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPSKHKLIQKAKNLQSEYDFFYDIMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVIGGNVGTPLAELDPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYKDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYELLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALNRYKDKKIHLIIGGDDKGVDLSNLFDFMKNFNIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYVERG
                     KVFKECVNKI"
     gene            complement(14039..15100)
                     /gene="mraY"
                     /locus_tag="ACHDOB_000344"
     CDS             complement(14039..15100)
                     /gene="mraY"
                     /locus_tag="ACHDOB_000344"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HFN3325287.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIVFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            15180..16658
                     /gene="gpmI"
                     /locus_tag="ACHDOB_000345"
     CDS             15180..16658
                     /gene="gpmI"
                     /locus_tag="ACHDOB_000345"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046537 -
                     2,3-bisphosphoglycerate-independent phosphoglycerate
                     mutase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HFN3325288.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIVECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            16642..16740
                     /locus_tag="ACHDOB_000346"
     CDS             16642..16740
                     /locus_tag="ACHDOB_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-ketoacyl-ACP reductase"
                     /protein_id="HFN3325289.1"
                     /translation="MRLCFSLFAFFIRNLLRLQFLKLNLLRIDNEI"
     gene            16730..17473
                     /gene="fabG"
                     /locus_tag="ACHDOB_000347"
     CDS             16730..17473
                     /gene="fabG"
                     /locus_tag="ACHDOB_000347"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HFN3325290.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELGYLVNNAGVTNDKLALRM
                     KLEDFSSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            17480..17890
                     /locus_tag="ACHDOB_000348"
     CDS             17480..17890
                     /locus_tag="ACHDOB_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HFN3325291.1"
                     /translation="MMDLKEIAQFLDDNVPAFLATLGTCGNPRVRPIQSPLLVRDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFEKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            18227..20062
                     /gene="sdhA"
                     /locus_tag="ACHDOB_000349"
     CDS             18227..20062
                     /gene="sdhA"
                     /locus_tag="ACHDOB_000349"
                     /EC_number="1.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-methylmenaquinol:fumarate reductase
                     flavoprotein subunit"
                     /protein_id="HFN3325292.1"
                     /translation="MGEFSRRDFIKTACISVGALAASSSGVYALDDSSKMDKDTNLPS
                     CDVLVIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVMDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGAKTHELAQKWQARFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKNLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
     gene            20059..21024
                     /gene="sdhB"
                     /locus_tag="ACHDOB_000350"
     CDS             20059..21024
                     /gene="sdhB"
                     /locus_tag="ACHDOB_000350"
                     /EC_number="1.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-methylmenaquinol:fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HFN3325293.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEGHKDLVKMIKAAQEAAVKE"
     gene            21028..21885
                     /gene="sdhE"
                     /locus_tag="ACHDOB_000351"
     CDS             21028..21885
                     /gene="sdhE"
                     /locus_tag="ACHDOB_000351"
                     /EC_number="1.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-methylmenaquinol:fumarate reductase membrane
                     anchor subunit"
                     /protein_id="HFN3325294.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     TFLAQGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTSSKARLPMIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(21909..22577)
                     /gene="tenA"
                     /locus_tag="ACHDOB_000352"
     CDS             complement(21909..22577)
                     /gene="tenA"
                     /locus_tag="ACHDOB_000352"
                     /EC_number="3.5.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050334 - thiaminase activity [Evidence
                     IEA];
                     GO_process: GO:0006772 - thiamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HFN3325295.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELNIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVSAQKFQKLSEIFHTATRLEVAFWEHSLRM
                     ELNL"
     gene            22687..22920
                     /gene="acpP"
                     /locus_tag="ACHDOB_000353"
     CDS             22687..22920
                     /gene="acpP"
                     /locus_tag="ACHDOB_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFN3325296.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            22946..24160
                     /gene="fabF"
                     /locus_tag="ACHDOB_000354"
     CDS             22946..24160
                     /gene="fabF"
                     /locus_tag="ACHDOB_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HFN3325297.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     AAGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVISVMALRDGVVPPTINQLVKDDECDLDYVPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            24162..25100
                     /gene="accA"
                     /locus_tag="ACHDOB_000355"
     CDS             24162..25100
                     /gene="accA"
                     /locus_tag="ACHDOB_000355"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HFN3325298.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADRLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
BASE COUNT         8683 a         3522 c         5122 g         7852 t
ORIGIN      
        1 aataaaataa ctttttatga tgctgtttta tttggagaaa tttacggtgg aagaacatta
       61 cagggtaatg cagagaaaaa ttctatagaa gtttatcatt ttaactcatt agatcatctt
      121 aataaaaaca ttaaaacaca tgcatcgtta aacctctatg gtgggtattc taacgatggt
      181 gaagctaatg gaaataaaat tgtatttcgc cttaaaaaac ctttaaaaat cagtgataat
      241 ttttatggaa aaaattatta caatctttac ggaggttttg ctacagaggg tgcgaatttt
      301 aatgttattg atatacaaaa tgatttaacc tatgaaaaag ttccacaaaa ttattctgat
      361 aaatttactg tatatgcggc aagaacttta agcggaaaag caaataataa tatcttaagt
      421 ataaaagatt ctgttatttc attgccttta tatgctttta ttacaagtga aactacgcta
      481 gatggtatag actatatcgc cgatgaatca aacaataatg aagtaaattt tgaaaatatt
      541 aaatcatcta aaaatttaag tttgatgatc aatgctaaaa atgtttcaaa taataaaata
      601 aattataatc tcattcagag tttaaccgaa gcgagttctt taggaaaggg ctcaaaaatt
      661 attttaaaag caactcaaaa tgcaaataac aaccttataa agcttaaaga ttgttcttcg
      721 gctgccgtgg aaagttcgtg catcataaaa gcagataaag aaagtgcttt taataaaatt
      781 atcatcaaca acacagcttt tagtactgcc tcggataaaa gacaaggtta tgtggggttg
      841 atagctggag tgtctgcaaa ttctcatgat aatatcatgg aacttgttaa tttaaatata
      901 gatgagtata aaaatcaaga tgctatattt ttagctccat ctggaacttc ggatatttca
      961 aattttaaat cttataacaa tactttatat ttaggtggag agttaaattt ctttaaagat
     1021 gtaaatatcg atttgctttc tggttctgtt tttcatgaag taaataaaaa aggcaaaata
     1081 atcactcaaa ttctaccgca tcaagaagat ttttctaaaa acaatcgttt gattatagat
     1141 actcaagatg ttaaatcaga agtggtaaat aactttgaaa attttacttt tattttgcca
     1201 aataaaataa aaaatcctat cttaactata gaaaaactta tcaatcttcc tgcaaatgga
     1261 agtatggaaa ttcttactaa aaataaacca acaaaaggaa aatatattct catacaaagt
     1321 gatgttggaa tttatgatgg tgacaataga ttgttaaatc aacaagaatt agaaaatttg
     1381 ttagaaaaaa tgaaaaataa taaaaataaa tttaattata acaagataga aaagttggct
     1441 aaaagtacat tgaaaaatgt aaattttagc tttgaagttt cagatgatgc aaaaataatt
     1501 tatatcaaca tactttaaag gagagtaaca tgaaaaagat gagtaaacat atagttttat
     1561 catttgcggt gagttcttta ctcttttctc aagcttatgc tttaccacaa ggaggtaaat
     1621 ttactcatgg tacaagtggg actatccata cctctggaaa tactgtaacg attacaggaa
     1681 aaggacaaaa tcatgttatc caatggggtg gtggttttaa tataggacaa aatgaaagtg
     1741 taaattttaa cggcaaaaat caaaactacc taaacattgc ttatcaaaaa gatgcttcta
     1801 agatagacgg agctttaaat ggtgggaata acaatatctt tttggttaat cctatgggag
     1861 ttttgattgg caaaacagga actatcactg cgggaaaatt tgtagctagt acgacgcctt
     1921 taagtgatga taatgtcaaa acttttttag agaaaggagc tggtttttct ccagcatttg
     1981 atgtaagtaa gcaaggaaat attatcaatc ttggaaagat taatgcagat aatattgttt
     2041 taataggaaa taaggttgaa ataggagtag gagcggagct agcggggcaa gatgggcaaa
     2101 ctaatgctaa aacagctcat ttaataggaa attatgttta tgttagtgta ggaaaagata
     2161 aagagaataa aaatactatt aaaattgata aagatggctt caaaggcacg gctattgttg
     2221 agggatttat gcaaagggat atgacaagtt ttgcaaatga taaatatcaa tttggagatt
     2281 ttggtactat tttaaagtct tcttgcaatg gaaaagagag tcaaaatttt tataaagcca
     2341 tcactattgg tggttgggaa aatgataaaa atattcaaga atggatttta ttttcaaatg
     2401 gttggaataa agatgaatta aatggaattt ttaaagatga tttaacaact gtaagattag
     2461 ttagcgatat agattttgga tataaaaatg cagtagatcc tgtgggtgca agtaaatatg
     2521 cctttagtgg aatttttgat ggtggaaatt atactttaaa aaatatactt atcaatgctc
     2581 aaaacacaga caaaggatgg aatactggta tttttggtaa agttgaagga aaagatggta
     2641 acaataaggc taaaatttat aatcttaatg tcgatggttt aaaatttagc ggaaaaacaa
     2701 attctggagg agcttttgtt gggcaaagct ctaacgcaga ttttagcaat attcatttaa
     2761 aaaatattgg agatttaatt ttctttgatc caaattctaa aaatgaaacc agtggatttc
     2821 tttatggtgg tggttttgta ggttatgcta aaagcggttc tagttttaat cgtattagtt
     2881 tagataattt ttctaaaatc gcactacagc cagagggtaa atttagcagt gcgtatattg
     2941 atatttactt aggtggtttt gctggctatt cagaaggtag taatttttct aatattttat
     3001 taaacaatat tggcggagta acgattttag gttcggaaac aggtggtaat atttttgcag
     3061 gtggttttgt aggttatgct ggagataaat catatttttc tcaaattgat ttaaaaaata
     3121 taggtagtgt tcaagcagat ggtaaaactt ttgtcaagca tgctggcgca ggaggttttg
     3181 ctggagctat aaatggaact aattcttttg aaaaatttct ttaataaatt ttggagatat
     3241 tattgcgaaa agaggatatg tttgggttgt taacggtaac tttaaagtag gttccggcgg
     3301 ttttatagga cttttaaatc ctttagatga taaaatttta tatgtcgatt ttaaaaatat
     3361 attattaaac tttgatcaaa aaatgcaaat ttacgctaaa gctggagatg gagcttcgag
     3421 ctattttcca gatttaaata actgggagta taatttttct ggtggatttt ttgggggatt
     3481 gtttacatca aaagttggga gagcaaattt taataatatt caacttaaat ttggacaaga
     3541 tgtaagtatt attgctcaaa agtttcgttc aaattctaat gaaaaatatc aaggtttatt
     3601 ctatgggtac tctgtgaaaa attggaatga tggaattatg aaaacggata atgttgctat
     3661 ctattatgaa aaaaattata acactaatca atataattgg tattatcaag atatcaaaga
     3721 tggctttttt gggagtgcta taaatgatta tgcttacaaa gatggcagat catatgaatt
     3781 ttatgattat aatgtgatga aagatatgga gataaataaa caaattatag ctattcttga
     3841 aaaagatgga gtggttagta aggattataa caatggatat gtttcttatt atgatggtaa
     3901 tgcaaaaatt actccagaag tgcctgattt taaagatccc gttttatctc aaaatgactt
     3961 tgaccctaaa ttgcttcaaa gaattttaga tgatttgatg aatggaaaat acacttatga
     4021 ttttgatacc aaaacttgga cttacacaga tagtaagggt gtggtaggaa aagatgaggc
     4081 tagtgagatc actcaaagtt taaatttctt aaatgcgttt aaagatactg gagtagaaca
     4141 agaatttata aatttgtgga aaaattctca agatcaaaat tataaaaatt acgccaatct
     4201 ttatgaaaaa tggacgcaaa agaaaactgc tatggataaa atcaaaaccg gcgaaggtta
     4261 tttcgctagt tttaaagaag aattacaaaa ataccaagaa gccttagctc aacttgacaa
     4321 agaaaataaa aactatgaaa aaatcaaaga atcaggctta gttagcgatg aaacacttaa
     4381 agttatgtat gaaaaacttt tagaacaaaa agaagctctt gaaaagcagt ttgcggatct
     4441 tagtggaaat gaaggatttc actataagct tgaaaatgaa attttaaatt ctcaaggttt
     4501 tgctataaat ggaagtgatg tagatggtaa agcatacatt ggaaatttta attttaaagg
     4561 aaaattagct tcattgccag aaaaaccaaa tatatctatc tatgagccag ataaacaagg
     4621 gggtgaagat ccagcaaacc ttctgtattg ccgcctgaaa ttcctgaaaa ggttgtagaa
     4681 gctcctataa aaattcaaac cgaagtagac gcaaaaaaag aagaagatga tgatcaagta
     4741 gaaataggag aagcagatgc tagaagtagt ggtttgcgtt gtattgtaag tgataatttt
     4801 aagacaatga atatttgtgt aaatgcaaaa taggaaataa aaatgagaaa aattttagtt
     4861 gttttagtct tattgcaagt attttcacat gctgaagagt taaataataa taaaataaga
     4921 gagcttatag aaagctctcc tgaagcaaat gaaccacaaa ataaaaattt aaaaaataca
     4981 ttaaaaaatc aaaaaagccc tgtaaatttt aaagagcaaa atactacaaa tattacaaat
     5041 tcacaaactg atcaaaatga agctaaggtt tttgtaagag agtatgtttt gcatatcgat
     5101 aataaagatt tgacatttaa aaaattaaga attagcgaaa aagaaattca agatgcaata
     5161 gctgaatatc gcaaccaaga gttaagctta caaaatttaa aagatataac aaacattata
     5221 gcttattatt gtcaagtaag tggctatcct tcggcaactg cttatatacc accacaagat
     5281 ttaagttcta acaaagtgca aattaacata gcttttggaa ctttaggaaa agtaatcatt
     5341 aaaaacaact caggtgtgag ggattatgct ttagagagta aattgaacaa aaatcttaaa
     5401 gggaaagtta tcacaactaa aaatgtggaa aatgaaattt acaaaatcaa tgaaatatac
     5461 ggaatccaaa ccaatgctaa tttacaatca ggtgatggtt atggagaaag cgatgttatt
     5521 atagaagtaa acaaaggtga tagtgcaact ttaactttat attctaacaa ctatgggacc
     5581 aaagaaacag gtcgttttag agcaggaatg agtcaaagtt taaacaatat agcaagacaa
     5641 ggggataact taaattttta tcttcaagat agcgatgaaa atcaaataga ttatgggatt
     5701 aattatagta cttttatagg aaatttaaaa attactccat ttgcaactca aggacattat
     5761 gttcttggtg gaatttatag aaatcttggt ttttatgggg actctatgaa tgttggagta
     5821 aatttttctt atcctgtgtt tttatatacc gagtattctt tatatcttgt ttcgggtttt
     5881 actcataaaa agattaaaga ttattatctt gatggtttag taagtaatga aaaagcgagc
     5941 aatagtgtaa atttaggcat agaaggaact tataaaggtt tggagaataa tgtcctaagt
     6001 tataccttaa attttacata tggcaatgtt gaaaacgatg gtgattcttc tggatttaat
     6061 ggagtaaatt tagggaattt tggaaaaatg aatttaaatt taagcaacga atatcaattc
     6121 caagaacgct taactcacat ttttcaactc aattatcaaa aagttatcgg tggtgctgtt
     6181 ttagatagta gtgaatccgt gtctttaggt ggaccttatg gtgtgcgtgc ttatttagaa
     6241 ggcgagggga gtgcggataa tgttgtttct ggcaccttag gaataagatt tcaaacacct
     6301 ttagaagggc tttacttgac tcctttttat gatataggat attcttggta tgaaaataaa
     6361 gaatatcaaa gcgaaaatca ttattttatg gatgcaatgg gtatgcaaat actctataca
     6421 agaagtgcta atttttatgt aaaaatggat gctgcaagag ctgttcatcg gtttaaacac
     6481 gatggagaac atcgagcaag agtttatgta agcctaggaa aatactttta actttggggt
     6541 gattggagaa atttctaccc cccccccatt tttaaaccca ccaaatactt atataaatac
     6601 ttacacaaat atttatacta tttaatcctt tatttaatcc ccttttaagt ttaattggtt
     6661 atactttcat ttcctttttt gaaaaaagga cttaaaatct tttaaattat aaagtttcac
     6721 tagcttagta gattttataa attaactctt ttggttttta tcttataaac taaaagcttt
     6781 tttataaatc ttgtttttta atttaaaaac ttttctttta aaaatgattt tttgttttgt
     6841 tcttttaatt tagtattgtt attcaaatct tattagtcaa tctttgaaat ctaaataagt
     6901 gatcgattga gccagataaa gatttaggca taagcaatta tgtaaaatct attcaatcta
     6961 ataatgaaaa agattaaaaa cttttctttt aatctttcat aactttttct ttgaagaaaa
     7021 agattaaact atctataatt ttttatggag agtttgatcc tggctcagag tgaacgctgg
     7081 cggcgtgcct aatacatgca agtcgaacga tgaagcttct agcttgctag aagtggatta
     7141 gtggcgcacg ggtgagtaag gtatagttaa tctgccctac acaagaggac aacagttgga
     7201 aacgactgct aatactctat actcctgctt aacacaagtt gagcagggaa agtttttcgg
     7261 tgtaggatga gactatatag tatcagctag ttggtaaggt aatggcttac caaggctatg
     7321 acgcttaact ggtctgagag gatgatcagt cacactggaa ctgagacacg gtccagactc
     7381 ctacgggagg cagcagtagg gaatattgcg caatggggga aaccctgacg cagcaacgcc
     7441 gcgtggagga tgacactttt cggagcgtaa actccttttc ttagggaaga attctgacgg
     7501 tacctaagga ataagcaccg gctaactccg tgccagcagc cgcggtaata cggagggtgc
     7561 aagcgttact cggaatcact gggcgtaaag ggcgcgtagg cggattatca agtctcttgt
     7621 gaaatctaat ggcttaacca ttaaactgct tgggaaactg atagtctaga gtgagggaga
     7681 ggcagatgga attggtggtg taggggtaaa atccgtagat atcaccaaga atacccattg
     7741 cgaaggcgat ctgctggaac tcaactgacg ctaaggcgcg aaagcgtggg gagcaaacag
     7801 gattagatac cctggtagtc cacgccctaa acgatgtaca ctagttgttg ggatgctagt
     7861 catctcagta atgcagctaa cgcattaagt gtaccgcctg gggagtacgg tcgcaagatt
     7921 aaaactcaaa ggaatagacg gggacccgca caagcggtgg agcatgtggt ttaattcgaa
     7981 gatacgcgaa gaaccttacc tgggcttgat atcctaagaa ccttatagag atatgagggt
     8041 gctagcttgc tagaacttag agacaggtgc tgcacggctg tcgtcagctc gtgtcgtgag
     8101 atgttgggtt aagtcccgca acgagcgcaa cccacgtatt tagttgctaa cggttcggcc
     8161 gagcactcta aatagactgc cttcgtaagg aggaggaagg tgtggacgac gtcaagtcat
     8221 catggccctt atgcccaggg cgacacacgt gctacaatgg catatacaat gagacgcaat
     8281 accgcgaggt ggagcaaatc tataaaatat gtcccagttc ggattgttct ctgcaactcg
     8341 agagcatgaa gccggaatcg ctagtaatcg tagatcagcc atgctacggt gaatacgttc
     8401 ccgggtcttg tactcaccgc ccgtcacacc atgggagttg atttcactcg aagccggaat
     8461 actaaactag ttaccgtcca cagtggaatc agcgactggg gtgaagtcgt aacaaggtaa
     8521 ccgtaggaga acctgcggtt ggatcacctc ctttctagag tacaaagtaa taagtctcac
     8581 aactattact tcaatatata aactcaattg attcttgttt agatttcaaa gattgatgat
     8641 aaagctaatt gtttatgggg aattagctca gctgggagag cgcctgcttt gcacgcagga
     8701 ggtcagcggt tcgatcccgc tattctccac catttattaa gggcctatag ctcagctggt
     8761 tagagtgcac ccctgataag ggtgaggtca caagttcaag tcttgttagg cccaccataa
     8821 aaaagatttg aataaaaaag ctttaaaatc taaagcaagt atataaagta gattaaatat
     8881 aaaatataaa ctctatactt agatttattt ttatctttag ctataaaaga atatacttta
     8941 atagatataa atagcatata cattatgtat ttatatttat aatgagatta tattaatata
     9001 tatacttcct ttaggtttta aacctaatgt tctttttaat tatcattgtt aagagtcaca
     9061 agcaagtttt aataaaaaca attttacagg acttgttaaa ggataaaacc tatttatctt
     9121 ttctttagtt taacttatat cttttaatta tctttatttc tataataaag agaatattag
     9181 atttaagatt tataaattaa agacaagttt caaactcaca gcttagttga gactaaatca
     9241 tttagtttta tattaagtgt ttgaatgctt tccgtcttaa gataaagaag tcttatcata
     9301 aaaactttaa caaggaagtg atgcgtttta gaatcaataa aaaaggtaaa aaaggtaagc
     9361 tactaagagc gaatggtgga tgccttgact ggtaaaggcg atgaaggacg tactagactg
     9421 cgataagcta cggggagctg tcaagaagct ttgatccgta gatttccgaa tggggcaacc
     9481 caatgtatag agatatacat tacctatata ggagcgaacg aggggaattg aaacatctta
     9541 gtaccctcag gaaaagaaat caatagagat tgcgtcagta gcggcgagcg aaagcgcaag
     9601 agggcaaacc cagtgcttgc actgggggtt gtaggactgc aatgtgcaag aggtaagttt
     9661 agcagaacat tctggaaagt atagccatag agggtgatag tcccgtatgc gaaaaacaaa
     9721 ccttagctag cagtatcctg agtagggcgg gacacgagga atcctgtctg aatccgggtc
     9781 gaccacgatc caaccctaaa tactaatacc agatcgatag tgcacaagta ccgtgaggga
     9841 aaggtgaaaa gaactgaggt gatcagagtg aaatagaacc tgaaaccatt tgcttacaat
     9901 cattcagagc cctatgtagc aatacagggt gatggactgc cttttgcata atgagcctgc
     9961 gagttgtggt gtctggcaag gttaagcaaa cgcgaagccg tagcgaaagc gagtctgaat
    10021 agggcgctta gtcagatgct gcagacccga aacgaagtga tctatccatg agcaagttga
    10081 agctagtgta agaactagtg gaggactgaa cccataggcg ttgaaaagcc ccgggatgac
    10141 ttgtggatag gggtgaaagg ccaatcaaac ttcgtgatag ctggttctct ccgaaatata
    10201 tttaggtata gcgttgtgtc gtaatataag ggggtagagc actgaatggg ctagggcata
    10261 caccaatgta ccaaacccta tcaaactccg aataccttat atgtaatcac agcagtcagg
    10321 cggcgagtga taaaatccgt cgtcaagagg gaaacaaccc agactaccag ctaaggtccc
    10381 taagtcttac ttaagtggaa aacgatgtga agttacttaa acaaccagga ggttggctta
    10441 gaagcagcca tcctttaaag aaagcgtaat agctcactgg tctagtgatt ttgcgcggaa
    10501 aatataacgg ggctaaagta agtaccgaag ctgtagactt agtttactaa gtggtaggag
    10561 agcgttctat ttgcgtcgaa ggtataccgg taaggagtgc tggagcgaat agaagtgagc
    10621 atgcaggcat gagtagcgat aattaatgtg agaatcatta acgccgtaaa cccaaggttt
    10681 cctacgcgat gctcgtcatc gtagggttag tcgggtccta agtcgagtcc gaaaggggta
    10741 gacgatggca aattggttaa tattccaata ccaacattag tgtgcgatgg aaggacgctt
    10801 agggctaagg gggctagcgg atggaagtgc tagtctaagg tcgtaggagg ttatacaggc
    10861 aaatccgtat aacaatactc cgagaactga aaggcttttt gaagtcttcg gatggataga
    10921 agaacccctg atgccgtcga gccaagaaaa gtttctaagt ttagctaatg ttgcccgtac
    10981 cgtaaaccga cacaggtggg tgggatgagt attctaaggc gcgtggaaga actctcttta
    11041 aggaactctg caaaatagca ccgtatcttc ggtataaggt gtggttagct tcgtactagg
    11101 atttactccg aaagcgaaga aacttacaac aaagagtccc tcccgactgt ttaccaaaaa
    11161 cacagcactc tgctaactcg taagaggatg tatagggtgt gacgcctgcc cggtgctcga
    11221 aggttaattg atggggttag cattagcgaa gctcttgatc gaagcccgag taaacggcgg
    11281 ccgtaactat aacggtccta aggtagcgaa attccttgtc ggttaaatac cgacctgcat
    11341 gaatggcgta acgagatggg agctgtctca aagagggatc cagtgaaatt gtagtggagg
    11401 tgaaaattcc tcctacccgc ggcaagacgg aaagaccccg tggaccttta ctacagcttg
    11461 acactgctac ttggataaga atgtgcagga taggtgggag gctttgagta tatgacgcca
    11521 gttgtatatg agccattgtt gagataccac tctttcttat ttgggtagct aaccagcttg
    11581 agttatcctc aagtgggaca atgtctggtg ggtagtttga ctggggcggt cgcctcccaa
    11641 ataataacgg aggcttacaa aggttggctc agaacggttg gaaatcgttc gtagagtata
    11701 aaggtataag ccagcttaac tgcaagacat acaagtcaag cagagacgaa agtcggtctt
    11761 agtgatccgg tggttctgtg tggaagggcc atcgctcaaa ggataaaagg taccccgggg
    11821 ataacaggct gatctccccc aagagctcac atcgacgggg aggtttggca cctcgatgtc
    11881 ggctcatcgc atcctggggc tggagcaggt cccaagggta tggctgttcg ccatttaaag
    11941 cggtacgcga gctgggttca gaacgtcgtg agacagttcg gtccctatct gccgtgggcg
    12001 taagaagatt gaagagattt gaccctagta cgagaggacc gggttgaaca aaccactggt
    12061 gtagctgttg ttctgccaag agcatcgcag cgtagctaag tttggaaagg ataaacgctg
    12121 aaagcatcta agcgtgaagc caactctaag atgaatcttc tctaagctct ctagaagact
    12181 actagtttga taggctgggt gtgtaatgga tgaaagtcct ttagctgacc agtactaata
    12241 gagcgtttgg cttatcttta ataaagcatc acttccttgt taaggttttt aagaagactt
    12301 tgaatataga taatatttag agtttaatag aaatctttca agtagagttt gtattagaac
    12361 ttgctcttaa cattgttttt taagtattct atataaaaac ttatcaaaga taaaagataa
    12421 gaaaaaaata aataaaaaca aaagaagaaa gagaataaag aaaaaagtaa agaaataaaa
    12481 gattaagctt tattttttaa attcaatctt tcaaagaata tttaaataac aatgtccgtg
    12541 attatacaga tgtggaaacg ccttgctcca tcccgaacca agaagctaag cacatcgtgg
    12601 gtgatgatac tacgccttac tggcaggggg aaagtagctc attgcggact tgttaaatgt
    12661 cttcattact tactttatat ataaatccta tgtttatttt tattgttgtt ttagatggtg
    12721 tttgaaatag tgtttaaaaa agagtttgct gctggttagg gtttttagag agaatagggt
    12781 gtttttaggg tttggaaagt ttaatatatt tgtatggatt gtataataaa ttaaatttta
    12841 ttcacacatt ctttaaagac ttttccacgc tctacgtaag agttgaactg atctaaactt
    12901 gcgcaagcgg gacttaaaag agccacttca ttgactctta agtgatttga aatttcattt
    12961 acagctttag ataaaacttc acatttatag gctttcaaat tcgctttttt tgcataatca
    13021 agcatttttt cggtactaat acctatagca tagagttcta tgttaaaatt tttcataaaa
    13081 tcaaataaat tgctaagatc tacaccctta tcatctcccc ctatgataag atggattttt
    13141 ttatctttat agcgattaag tgcagccatt accgcgcttt catttgtggc tttagtgtca
    13201 tttacccaaa gtctattttg actgtcttta agctcttcaa gtttattttt ttccattaca
    13261 aagctattta aaagctcata gcttaaagta tcaagtagaa ttttttctat agctaaagcc
    13321 atgatagcat cgagtaaaaa aggactttta aaggaaattt tttccgtatc aatgccaaat
    13381 ttaacagcta gatctttttc atctttatag cttattttat gagcttttgt tggagtattt
    13441 gcataaattt taggcagtat tactacatcg cattcattca ttctttttaa aacgcttagc
    13501 ttatcttgaa cataattatc aaaacttcca tgccaagaaa gatgatcagg acttataggt
    13561 aaaagtgcat aaatttcagg tttagcttta tgagtgtagt gtagggtgaa agatgaagtt
    13621 tcaagtatcc aaagttttgc ataaggatca agctctgcta aaggagttcc aacatttcca
    13681 cctataacag caccaatgtg tgataataaa tgtgtagcca tttgagtggt agtagttttg
    13741 ccattggttc cgcttatcca aacggatttt ggcatgatat cataaaaaaa gtcatattcg
    13801 ctttgtaaat tttttgcttt ttgaatgagt ttgtgctttg atggaaaacc tggactagga
    13861 atttcaatat cgcttaaatt atcatcaaaa tcattaggat ttaaaagtaa atttcctagt
    13921 gtatcttttt ttgtttctgt aaaatgatca tcatagatat caaaaggccc aaatttatct
    13981 accaaatttt cagcaatagc gcgtgtggtt tttccgtatc caaaaagtga aattttcatt
    14041 atcttagctt tattgatgca agtgcaagta aatttgaaag taaggctatc atccaaaaac
    14101 gcactataat tttattttct acccagccaa ctttttcaaa atgatgatga ataggtgcca
    14161 ttttaaatac tcttttatta aaaattttaa aacttccaac ttgtaaaatt acagaaacag
    14221 tttcaagaac aaaaacaaaa cctatgagta aaagtaaaat ttcatttttg ctaatgatag
    14281 ctaaaaatcc tatgaatcca cctaaagcta aactcccgct atcccccata aaaacctgcg
    14341 caggataaca gttgtaccat aaaaatccca ttaaagcacc gattaatgca gcacaaataa
    14401 tcactacttc accaagtcct tgaatttttg gcaaaagtaa atattcacta taatttaaat
    14461 ttccgctcaa atataagaat atccctaaag tagataaaga aaaaatactt ggaactgtag
    14521 ctaagccatc aagtccatcg gttaaattta cagcattaga gctagaaatt aaaaccaaaa
    14581 tccaaaaaac aatggcaaaa atttccatat caaaaagagg gtgtttgtaa aaaggtataa
    14641 aaagttccgt gctaagctct gaactaaaat ataaaggtaa gatgcaaata agtccagcga
    14701 tgatttgtgc taaaagcttc attcttggac taagtcctga atgattatct ttttttagaa
    14761 ctttgcctaa atcatctatg agtcctatta aacaaaaaag tatcaaacaa agtaaagcac
    14821 ttatagcaaa aatattatca aatttgatac aaaataaact tgcgattact gcagaactga
    14881 tgaaaataag cccacccatg gttggagtat ggcatttggt tttatgagtt tctggggcgt
    14941 attcgtaaat aggttgacta gcatttttag cttttgccca agtaataaat ttaggcatta
    15001 aaaataaaga taaacataaa gcgataaaaa atgcaaatcc tgcacgcaca ctaatataag
    15061 taaaaaaagc ataatgactt aaatctgaaa gataatacaa aacctagcct tctttttggt
    15121 ttttaaaagt ttaattttag taaaatctaa ccaaaaaaat tcttataaaa gagagaaaaa
    15181 tgaagcaaaa atgcgtttta attattacag atggaatagg gtataataag aatagtaagt
    15241 ttaatgcttt tgaagcagct aaaaaaccaa gttatgaaaa gctttttaag gaagtcccaa
    15301 attctttact aaaaacgagt ggtttagctg taggtttgcc agaagggcag atgggaaata
    15361 gtgaagtagg gcatatgtgt ataggaagtg ggcgtattat ttatcaaaat ttagtgcgta
    15421 ttaataaagc cattgaaaac aaagaacttg aaaaaaatga gaatttacaa aaacttttag
    15481 caaaatgtaa aagagtgcat attatagggc tttatagtga tggcggggtg cattctatgg
    15541 atacgcattt taaagccatg cttgaaattt gtgcgaaaaa tggcaatgaa gtttttgctc
    15601 acgcaatcac tgatgggcgt gatgtaagtc caaaaagtgg cttaaatttc ataaaagatt
    15661 taaaagaatt ttgtgaaaac ttaggcgtgc attttgctac gctttgtggg cgtttttatg
    15721 ctatggatag agataagcgt tgggataggg taaaagagta ttatgagtgc ttgttaggta
    15781 aggcttataa agtgccaaat ttattagaat acctacaaaa atcttacgat gaaaatgtta
    15841 ctgatgagtt tatcaaagca gctcaaaatg agaattacaa gggcatgaga gaagaagatg
    15901 gcattatctt tatcaatttt agaaatgata gaatgaaaca acttgttgaa gtgttaaatt
    15961 ctaaggattt taaagagttt gaacgcgaaa aaatctttga aaatttactt actatgagtg
    16021 tttatgatga taaatttaaa ctccctgtgc tttttgaaaa agaaaaaatt gaaaatactt
    16081 tagcccaagt gatttctaaa gcagggctta gtcagcttca taccgcagaa accgaaaaat
    16141 atgcccatgt aactttcttt tttaatggcg gaaaagaaga gcttttagaa aatgaaacaa
    16201 gggttttaat cccaagtccc aaggtaaaaa cttatgatga aaaaccccaa atgagtgctt
    16261 ttgaagtgtg tgatgcagtg aaaaaaggca tagaaaaggg tgaggatttt atagtggtaa
    16321 attttgcaaa tggagatatg gttgggcata caggtgattt taatgctgct ataaaggctg
    16381 ttgaagcggt ggatacttgt ttgggcgaga ttgtagaatg tgcaaaaaag catgattatg
    16441 cttttatcat tacaagcgat catggaaatt gcgaagctat gcaagatgaa aaaggaaatt
    16501 tgcttaccaa tcacactact tttgatgttt ttgtttttgt gcaagcaaag ggagtttcaa
    16561 agattaaaga taatatgggg cttagcaata tcgctgcaag tgtgcttaaa attttagact
    16621 tagaaattcc aaaagaaatg aatgaggctt tgttttagtt tgtttgcctt ttttataaga
    16681 aatttgttaa gattgcaatt tttaaaatta aacttattaa ggatagataa tgaaatttag
    16741 cggaaaaaat gttttaatta ccggagcaag taagggaata ggtgcttcta ttgcaaaaac
    16801 tttggcgggt tttggactta aagtttggat caattatcgt tcaaaacctg aacttgcaga
    16861 tgctttaaaa gatgaaatta ttgcaagtgg tggcgttgct gctgtgatta aatttgatgc
    16921 aagcaaagaa gatgagtttg aaaatggtgt aaaaaccata gtggagagcg atggagagtt
    16981 aggttatctt gtaaataacg caggcgttac aaatgataaa cttgctttaa gaatgaaatt
    17041 agaggacttt agcagtgttg tggatacaaa tttaagttca gcttttttag gttgtagaga
    17101 agctttaaaa accatgagta aaaaacgctt tggtgctgtt gtaaatatcg cttctattgt
    17161 cggagaaatg ggcaatgctg gacaagtaaa ttattctgcc agtaaaggtg gaatgatagc
    17221 tatgactaaa tcttttgcta aagaaggagc aagtagaaat ttacgcttta actgtgtaac
    17281 tccaggtttc ataaaaagcg atatgactga agttttaagt gatgaaatca aacaaaccta
    17341 tcaagacaat atccctttaa aacgctttgc agaacctgaa gaagtggcta attgtgtagc
    17401 gtttttactt agtgattatg cctcttatgt gacaggcgat gtgcttaaga tcaatggtgg
    17461 tttatatatg taaggaaaaa tgatggattt aaaagaaata gcacaatttt tagatgataa
    17521 tgtaccagca tttttagcca ctttaggaac ttgtggaaat cctagagtgc gtcctataca
    17581 aagtccattg cttgtgagag ataaaattta tttttgcaca gcaaatacaa aaggactttt
    17641 taagcatata aaaaattata atggtattga attttgttct tgtgcaaaag atgggacttt
    17701 tttaagactt agggctaatg cggtttttga accaaattta gaagttaaaa aaatgatgtt
    17761 tgaaaaatat ccttatcttg taaatcttta tgaaactccg caaaatccaa aatttgaagt
    17821 tttttatctt gatcatttaa gcgctagaat gcaatttatg aatggagaat ttaagctttt
    17881 taaggcttaa tgatttgata attttattaa ctatatatta attaagataa atattatctt
    17941 aattaatatt aactttttgt tattttttta aggtataatc attccgttta atttgcaagg
    18001 aatagattat gatatattgc aaaaattttt taatatttat tttattatat tcatctatct
    18061 tctttgattg cttatcttat gcttttttat atttattaaa ttataaattt gtttttaatc
    18121 cattttatat tgaaaggaga gtttgttttt ggatttttgg catgcggtta tgtaagattg
    18181 acttacatta aaaattatta ttaatttttt aaataaggag aatgatatgg gtgaattttc
    18241 tagaagagat tttataaaaa cagcctgtat tagtgtagga gctttagctg caagttcaag
    18301 tggagtttat gccttagatg attcatctaa gatggataaa gatacaaatt taccttcttg
    18361 tgatgttttg gtaattggat caggtggagc aggtttgcgt gctgcagccg cagtgagaaa
    18421 agaaaatcca aaattaagcg ttgtagtagc tacaaagatg atgccatcgc gtaacgcaac
    18481 ttgtatggca gagggtggaa ttaatggagt tactgatttt tctaatggag attcctataa
    18541 attacatgct tatgatacta tcaaaggcgg agcttatttg gtagatcaag acgcggcttt
    18601 aaaattttgt gaattagctg gaaaggctat ttttaatatg gattttatag gaaccttgtt
    18661 ttcaagaaat gagcaaggtg gagtagctca gcgtttaatg ggaggagctt ctaagaaacg
    18721 ctgtaattat tctgcagata aaacaggtca tattttaatg cattcttgtt tagatgatgc
    18781 tattagtagt ggtgtgaaat ttttaatgga tcatgaactt ttggatatag gtgttatgga
    18841 tggaaaatgc gagggtgtcg ttttaagaga tatacaaagc ggtggaattt atcctgtatt
    18901 atgcaaagct ttggtgattg ctacaggggg atacacaagg atattttata atagaacttc
    18961 aactcctttt attgccacag gagatggtgt ggcagctgct cttagagcag gacttggttt
    19021 tgaagatcct gagatgatac aatttcaccc aacaggagtt gcaaatggtg gaactcttat
    19081 tacagaagcg gcgcgcggtg aagggggata tcttttaaat aatcgtggtg agcgttttat
    19141 gaaaaattac catgaaaaaa tggagcttgc cccgcgagat gtagttgcgc gtgctataga
    19201 aacagaaatt cgcgaaggta gaggttatgg cgagggactt ggagcttatg ttttgtgcga
    19261 tgtacgccac ttaggaaaag aaaaaatttt aaaagattta ccaaaaattc gtcacactgc
    19321 aatgcttttt gaaaatattg atttagtgga tactcctgta cctatccgtc caacggcaca
    19381 ttattctatg ggtggaattg aagtggctaa atttgaagat atgagtacta aaattgctgg
    19441 aatttatgta ggtggagaag cttcttgtat ttctatacat ggagccaata gactaggggg
    19501 aaattcttta gccgatgcag ttgtaactgg gcatttagca ggcattggtg cgacaaatta
    19561 tgccaaagat gcaagttttg gaaaaggggc aaaaactcat gaacttgctc aaaaatggca
    19621 ggctagattt aaagaaatta caaataatgg cggaaatggt caagaaatgt atgaattgcg
    19681 agaagagcta ggaagtcaaa attgggataa tatggggatt tttagaactc aagaaaaact
    19741 cgatcttcta gcaaaaaatt tagaagatat acaagcaaga tatgaaaaaa ttcgtattcc
    19801 aaatcctaat gaagtgatga atactgcttt tacagattat gtagagcttg gtaatttgat
    19861 tttactttct cgctgtgctt gtttagcagc tagaaataga cttgaaagtc gtggggctca
    19921 tactagagaa gattatccaa agcgagatga taaaaatttc ttaaaacata gcattgtaaa
    19981 tttagaaaat gatgaattaa aacttagtta taaagatgtc gtggtaactg agttttcact
    20041 tgatggaagg agagtacaat gaaaatcatc atagatcgtt ttaatggcaa ggaaaaatat
    20101 gaacaaagtt atgatattga tgataaggat atacaaggaa aaactctgct ctctcttttg
    20161 ctttttatta aaaaaacaaa agatattact ttaaatttta ccgcctcttg tcaatctgcg
    20221 atttgtgggg cttgtgcagt tcgtgtgaat gggcattctt atcttgcttg tgatactaaa
    20281 atgcaagatt tgttaaaaga atatgataat ccttcaagta tacgcatttc tccgcttgga
    20341 aattttagag taatttctga tttaattgtg gattgggagc cttctataga aaatttaaga
    20401 aaaattcgtc ctgccatggt ggcaaaaaat gaattttcag cggaaaaggg ctgtaaacaa
    20461 agtcaagaag aatttgatcg tattagcaag caatgggatt gtattttatg tggtagctgt
    20521 gcttcagagt gtaataaatt agaagcagat agtagcgatt atatgcaacc ttttgttttt
    20581 actcatgctt ggcgtgcagc ggcagactct cgaggtaagg atcctatgtt gcatgtaaaa
    20641 cccagcgtaa tgaatggact ttggctttgt gttcattgtc aagagtgcgc tgatcgttgt
    20701 ccaaagggta taagttcagt aagtgatata gcaaatttaa gagtgatggc gattaaaaaa
    20761 ggtttaaatg aaggcttagg gcctgatcat gctgaagctt tttataaaga tttagttgaa
    20821 ggttcaggac gcttgaatga aatttatctt gctttgcgtt ctgagggtgt tataggttct
    20881 atgggtaaaa cagatatagc ttttaaactt atgcgtgcag gaaaaatgaa tcctatgcat
    20941 gtttttggcg aggatgaaat agaaggacat aaagatttgg ttaaaatgat aaaggcggca
    21001 caagaagctg ctgttaagga gtaaaatatg caaaaagaat acgctttttt tccaggttgt
    21061 gttttatctc aagctgcaaa agaatctaaa atttcacttg aagctattgc acctattttg
    21121 ggttggaagt tgaatgaaat taaggggtgg agttgttgtg gggcttctca agcgcagtgt
    21181 gttgatccta ttgcgacttt ggtagctaat gcaagaaata ttgctttagc agaagagatg
    21241 aaaatgccaa tgcttacaac ttgtagtact tgtatgctaa ctttaactaa agcaaaaaat
    21301 actcttgata agggtgcaaa agaacgcatc aatacttttt tagcacaagg tggaatgaaa
    21361 tatcaaggtt caacgcctat tacaagtctt ttgtgggagc tttatgagga tttggataat
    21421 ttaaaaagca aggtgaaaaa gccgctttca aatttaaaag tagctttatt ttatggttgc
    21481 catagtttaa gacctgaaga tgctttcggt aaaaaagaaa gttcaaccaa tccaaaaagt
    21541 tttgaaagtg tagtagaagt tttaggggct aaaatagttc cttttgaaaa acgccttgat
    21601 tgttgtggtt ttcatgcttc ttatcctgca gaaaaatctg tgaaaaaaat gtctagtcaa
    21661 attgtcaata atgcaagtga aaatcaagct gattgtgttg taacaccttg tccactttgt
    21721 caaatgcagc ttgatatcta tcaagaaaga tttcaagatt atactagttc taaagcaaga
    21781 ttgccgatga ttcatttatc acaattagta ggacttgcat taggactttc taaagaaatg
    21841 gttggtttag attataatat tattgatgca agtaaaattg cataaaaaca tgggcaaaaa
    21901 gcccatgttt aaagatttaa ttccattctt aaagaatgct cccaaaaagc cacttccaag
    21961 cgtgttgcag tatgaaaaat ttcgctgagt ttttggaatt tttgtgcact aacacttgaa
    22021 gtataagaat taacaaaatc ttcaaattct ttagcttcat tttgaaaatt ttcacttcca
    22081 taggtcaaaa tccattcctt gtaaggatga tcttttaaat tttcattttt taaacgattt
    22141 ataatttcag cacctatttt tgcatagcct atagcgcaag cactaagagc aactaacata
    22201 tctaaaaaat ctccattttc acctacgctt aacatataac gcgaataggc tatattgact
    22261 aaactttcat cttttatatt gagttcatct gcattaatgc caagagataa aattgcacga
    22321 tgaagctcca tttctccttc aactatataa ttttgaaatt tcatagcaaa acgaagttct
    22381 tttgcggtat ttgagttaag tgctaatctt gcataacatt ttgcgtaatt aagcaaataa
    22441 atataatctt gcttgagata aaaaagaaaa ttttcttgct ttaggctttt atcttccaat
    22501 tttttaacaa aatcatgatg tagataagca ttccaaattt tttgattttc tttgattaaa
    22561 ttagagaaaa gcatcatttt tcctttatgt tttaatattt tattttcaag tataatgaaa
    22621 aactataaat attttaagct ttttatagta aaatacgctt tattttaatt ttttgaagga
    22681 gagcaaatgg caacatttga tgatgtaaaa gcagtagtag tagagcaatt aagtattgat
    22741 gcagatgcag ttaaaatgga atcaaaaatt attgaagatt taggtgctga ttctttagat
    22801 gttgtagagc ttattatggc tttagaagaa aaatttgaag tagaaattcc agatagtgat
    22861 gctgaaaaat taattaaaat tgaagatgtt gtaaattata ttgacaatct aaaaaaataa
    22921 tttttttctt gcaaggagct tattcttgaa aagagttgta gttacaggta ttggcatgat
    22981 caatgccctt ggtttagata aagaaagttc atttaaagca atttgcaatg gagaaagcgg
    23041 agtaaataaa attactcttt ttgatgccac agactttcct gttcaaattg cagctgaagt
    23101 taaaaatttt gatccattag aggttgttga tggcaaagaa gtaaaaaaaa ttgaccgttt
    23161 catacaactt ggaattaaag cagcaagaga agcaatgcag gatgctggat ttagcgaaga
    23221 attagacaaa gaagaatttg gcattgtttc ggctgctggt atcggaggtt tgcctaacat
    23281 agaaaaaaat tccattattt gttccgagcg aggtccgcgt aaaatttccc cttttttcat
    23341 accttcagca cttgtaaata tgttaggagg tttgatttct atagagcatg gacttaaagg
    23401 gccaaatatt tcttgtgtta cagcttgtgc agcaggaact catgctatag gagaagctta
    23461 taaaagtata gctttgggaa atgctaaaaa gatgttagtc ataggtgcag aagctgcgat
    23521 ttgtcctgtg ggtataggtg gttttgcttc aatgaaagct ttatcaacta gaaatgaaga
    23581 tccacagcat gcttcaagac catttgacaa agaaagagat ggttttgtca tgggagaagg
    23641 tgctggagct ttagtttttg aggaatatga agaggctaaa aaacgcggtg ctacaattta
    23701 tgctgaatta attggatttg gagaaagtgc agatgcacat catattactt caccaacttt
    23761 agatgggcct ttaagagcta tgaaaaaagc tttaaatatg gcagggaatc caaaggtaga
    23821 ttatatcaat gcacatggaa cttcaacccc tgtaaatgac aaaaatgaaa cagcagcaat
    23881 taaagagctt tttggcaata atatcccgct tataagttcc accaaaggac aaacaggtca
    23941 ttgcttgggt gccgcaggtg caattgaagc agttattagt gttatggcct taagagatgg
    24001 ggtagttcca cctacaatca atcagctcgt aaaagatgat gaatgtgatc ttgattatgt
    24061 tccaaatata tcaagaaaag tagatttaaa agtggtgatg agtaattctt ttggttttgg
    24121 tggcacaaat ggctgtgttg tatttaaaaa agtagattaa tatggcttct tatttagatt
    24181 ttgaaaaaaa tattcagcaa attgatgagg atattatcaa tgctcagatt aaaggagata
    24241 ctgaagctgt atcgatttta aagaaaaatc ttgaaaaaga aatttctaaa acttataaga
    24301 atttaagtga ttttcaacgt ttgcaattag cgcgtcatcc agatcgccct tatgctcttg
    24361 actatattga acttatttta aatgacgctc acgaaataca tggtgatcgt gcctttagag
    24421 atgatcctgc tattgtttgt tttatgggtt atttaggaga gaaaaaaata attgtaattg
    24481 gtgagcaaaa aggacgtgga acaaaagata aaatcgctag aaattttggg atgccacatc
    24541 ctgaaggata tcgtaaagcc ttaagagtag caagacttgc agagaaattt caaattccta
    24601 ttttattttt gatagatact ccaggtgctt atcctggaat aggtgctgaa gaaagagggc
    24661 aaagtgaagc tatcgctaga aatttatatg aattaagtga tttgaaaata ccgaccattg
    24721 ctatagttat cggagaaggc ggtagtggcg gggcgttagc tataggggtt gcagatagac
    24781 ttgcaatgat gaaaaattct gttttttcag taatttctcc tgaaggttgt gctgcaatac
    24841 tttggaatga tcctgcaaaa agtgaagctg caaccaaggc tatgaaggta acggctgatg
    24901 atttaaaatc tcaaggttta attgatgatg ttatagatga gcctacaaat ggtgcacatc
    24961 gcaataaaga agctgcagca gtagctattg ctgattatgt aaaaaaatct ctaaatgaac
    25021 ttgaaaatat tgacgtacga gaactttctg caaatcgtat gcagaaaatt ttaaagcttg
    25081 gagcctatca agaggcttag gcttttactt cgctttttta aataatttta ttatttataa
    25141 ttgttatcaa aattaagtta attaaaagta ttctttttt
//
LOCUS       DAZAND010000011        25134 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.011, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000011 DAZAND010000000
VERSION     DAZAND010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25134
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.011"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            42..2039
                     /locus_tag="ACHDOB_000356"
     CDS             42..2039
                     /locus_tag="ACHDOB_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OPT family oligopeptide transporter"
                     /protein_id="HFN3325299.1"
                     /translation="MMYKKQNLPELTLRGLILGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRAMVVESKLAYPEGRAAAEILKVANKDQSNKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRFIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDTSSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILRRTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKFIVMQYLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            2113..2916
                     /locus_tag="ACHDOB_000357"
     CDS             2113..2916
                     /locus_tag="ACHDOB_000357"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HFN3325300.1"
                     /translation="MENLNALILGIIEGLTEFLPVSSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAAGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLSNANSLIPLGIGFITAFV
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            3048..4856
                     /gene="thrS"
                     /locus_tag="ACHDOB_000358"
     CDS             3048..4856
                     /gene="thrS"
                     /locus_tag="ACHDOB_000358"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HFN3325301.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKNLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHILYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            4853..5371
                     /gene="infC"
                     /locus_tag="ACHDOB_000359"
     CDS             4853..5371
                     /gene="infC"
                     /locus_tag="ACHDOB_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HFN3325302.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            5410..6501
                     /locus_tag="ACHDOB_000360"
     CDS             5410..6501
                     /locus_tag="ACHDOB_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HFN3325303.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNKGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKHYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDASMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKPKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            6541..10166
                     /gene="vvfC"
                     /locus_tag="ACHDOB_000361"
                     /pseudo
     CDS             6541..10166
                     /gene="vvfC"
                     /locus_tag="ACHDOB_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter serine protease VvfC"
     gene            10247..11275
                     /gene="argC"
                     /locus_tag="ACHDOB_000362"
     CDS             10247..11275
                     /gene="argC"
                     /locus_tag="ACHDOB_000362"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0070401 - NADP+ binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HFN3325304.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKKKITLQFTPHLVSMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            11285..11731
                     /locus_tag="ACHDOB_000363"
     CDS             11285..11731
                     /locus_tag="ACHDOB_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HFN3325305.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVIDEEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            11735..12580
                     /gene="argB"
                     /locus_tag="ACHDOB_000364"
     CDS             11735..12580
                     /gene="argB"
                     /locus_tag="ACHDOB_000364"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HFN3325306.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATTEVASMVL
                     NHINKNLVHSLQNLGVKVIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDEDFNTYNINADDVACAIAKALRAEKLAFLTDTAGLYEDFSDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            12584..13771
                     /locus_tag="ACHDOB_000365"
     CDS             12584..13771
                     /locus_tag="ACHDOB_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HFN3325307.1"
                     /translation="MKMDYKEQSHIVPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEVGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGF
                     MQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(13791..14420)
                     /locus_tag="ACHDOB_000366"
     CDS             complement(13791..14420)
                     /locus_tag="ACHDOB_000366"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HFN3325308.1"
                     /translation="MNTFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            14509..15057
                     /locus_tag="ACHDOB_000367"
     CDS             14509..15057
                     /locus_tag="ACHDOB_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HFN3325309.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDKKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDSALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNNEEI
                     NFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(15026..16399)
                     /locus_tag="ACHDOB_000368"
     CDS             complement(15026..16399)
                     /locus_tag="ACHDOB_000368"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004516 - nicotinate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HFN3325310.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKNQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLTNFKFKGEIYAMRE
                     GEVIFPNEPLLCVKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLKLSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLELVYKEKRLLKKSSLNTIQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(16386..17408)
                     /locus_tag="ACHDOB_000369"
     CDS             complement(16386..17408)
                     /locus_tag="ACHDOB_000369"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HFN3325311.1"
                     /translation="MQRKRIYNPNSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(17411..17833)
                     /locus_tag="ACHDOB_000370"
     CDS             complement(17411..17833)
                     /locus_tag="ACHDOB_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFN3325312.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYIPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKSIKKG"
     gene            complement(17834..18442)
                     /gene="pyrE"
                     /locus_tag="ACHDOB_000371"
     CDS             complement(17834..18442)
                     /gene="pyrE"
                     /locus_tag="ACHDOB_000371"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HFN3325313.1"
                     /translation="MNLEQIYKDCGAYLEGHFLLSSGKHSQFYLQSAKVLEDPKLAAK
                     LCDELAKIITSYKIEFDSICSPALGGILAGYELARACSKRFVFTERVNKEMTLRRGFE
                     VKKSEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            complement(18445..19008)
                     /gene="frr"
                     /locus_tag="ACHDOB_000372"
     CDS             complement(18445..19008)
                     /gene="frr"
                     /locus_tag="ACHDOB_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HFN3325314.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDESVKNKESELLKV"
     gene            complement(19018..19389)
                     /gene="secG"
                     /locus_tag="ACHDOB_000373"
     CDS             complement(19018..19389)
                     /gene="secG"
                     /locus_tag="ACHDOB_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015136 - sialic acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015739 - sialic acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HFN3325315.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            complement(19493..20188)
                     /locus_tag="ACHDOB_000374"
     CDS             complement(19493..20188)
                     /locus_tag="ACHDOB_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HFN3325316.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            20348..20983
                     /locus_tag="ACHDOB_000375"
     CDS             20348..20983
                     /locus_tag="ACHDOB_000375"
                     /EC_number="4.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HFN3325317.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRVGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            20980..22863
                     /locus_tag="ACHDOB_000376"
     CDS             20980..22863
                     /locus_tag="ACHDOB_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HFN3325318.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNPEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGISFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     LFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYTKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(22887..23858)
                     /locus_tag="ACHDOB_000377"
     CDS             complement(22887..23858)
                     /locus_tag="ACHDOB_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HFN3325319.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(23868..25049)
                     /locus_tag="ACHDOB_000378"
     CDS             complement(23868..25049)
                     /locus_tag="ACHDOB_000378"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HFN3325320.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIVVTSCATESINWVLKGVYFDHILDKERNEVIISSVEH
                     PAVAAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
BASE COUNT         8547 a         3420 c         4451 g         8716 t
ORIGIN      
        1 gaatattttt taagttgaaa gtaaaatttt aaaacggaga aatgatgtac aaaaaacaaa
       61 atttaccaga acttacctta aggggtttga ttttgggaag tattttaact attattttta
      121 cagcttcaaa tgtatatttg gggttaaaag tgggacttac tttttcatca tcaattccag
      181 ctgtggtcat ctccatggcg gttttgagtc tttttaagac ttcaaatatt ttagaaaata
      241 atatggttca aactcaagct tcagcagcag gaactttatc atcagttatt tttgttatcc
      301 cagggctttt tatgtgtggg tattggagtg aatttccact ttggcaaact tttatgatat
      361 gtctttgtgg tggtggactt ggagtgcttt ttactatacc attaagaagg gctatggtgg
      421 ttgaaagtaa acttgcttat cctgagggta gagccgcagc tgaaatttta aaagtagcca
      481 ataaagatca gagtaataaa aaaggaaaac aaggcattaa agaaatagca ttaggctctt
      541 ttatagctgc tatttttagt ttattaagca atggttttaa actcgctgca agtgagagta
      601 attttgcttt tatttggaat aaaatggctt ttggtttttc tatgggatat tctttggcac
      661 ttttaggagc aggttattta gttggtttag caggtgctat agctcttttt gtaggtatgt
      721 ttttagcttg gggtattttt actccctatc tttcaaattt tgaatttgat agtgcaaaaa
      781 atgccgtaga tttagcttct agtgtatgga gttctaaagt aaggtttata ggaacaggag
      841 ctattgctat agcagcgctt tggactttaa tagaactttt aaaacccgtt attgaaggta
      901 ttaaagaaat tgttaaaaat gttaaaatta ctaatcaaga aaaaaatgaa agaacaaata
      961 tagacctttc tttaaaaagt atttttatac tttttgtttt aatggttgtg ggtttattta
     1021 ttacttttta tagttttgtt gaagatgcta acttaagtat ttattatcaa atgctatttt
     1081 catttgttgg aactttagtt tctgttttaa taggtttttt tgttgcagca gcttgcggat
     1141 atatggcagg acttgtagga tcttcttcta gtcctatttc tggaatcgga cttattggtg
     1201 ttattatttc ttctattgtt tttttggttt taggtgtgga actttttcaa gatcctatgc
     1261 tttctaaatt tgcagtagca ttagctattt ttactactag tgttattttg gctacagctg
     1321 ctatttcgaa tgataattta caagatttaa agacaggaca tttagtcgga gctactcctt
     1381 ggaagcaaca agttgcttta cttgtaggct gtgtttttgg tgctttggct atagttcctg
     1441 ttttaaattt gctttatcaa gcctatggtt ttgttggagc aatgccaaga gaaggtatgg
     1501 atacttcatc ggctttagca gcaccgcaag cgaatttaat gagtactatc gctcaaggaa
     1561 tttttcatca caatatagag tggggttata tggcttttgg tgtatttgta ggaattttaa
     1621 tgattattat agataaaatt ttaagaagaa cacagaaaat gtctttgccg cctttagccg
     1681 ttggaatagg tatttacctt ccgcctgctg taaatatacc tttagttata ggcggaattt
     1741 taaaatttat tgtaatgcaa tacttgacta aaaaatatgc aaaaaattct cataaagaag
     1801 aaaaacttgc aagttgtgag caaagaggca cgctttttgc ttcagggctt atagtgggtg
     1861 aaagtatttt tggggtaatt atcgcaggaa ttactgtatt ttcagtaagt atgggtggta
     1921 gtgaaaatcc tttagcttta aatttagcaa attttcatga tagcgagctt ttcgcactta
     1981 tcttttttgt gggagttgta ttatatttta ttaagcgtat tgttaaaaaa gatgcttaat
     2041 ttttggggtt aaaaccccat ttaatccatt ctgatataat ttttcttttg caattatcat
     2101 tcaaggatta aaatggaaaa tttaaatgct ttaatacttg gaattataga aggtctgact
     2161 gagtttttac ctgtttcttc aacaggacat atgattttag gtacgactat tttaggtatt
     2221 gatatagatg agttttggaa aagttttttg attatcatcc agcttggttc tattttggcg
     2281 gtaatttttg tattttggcg taaattgttt caagggcttg atatttggtt aaaacttgca
     2341 gcgggatttt ttcctactgg agttataggg ctttttgtgg caaaatactt aaatgcttta
     2401 tttaatggtt gggttgtggt tggaatgctc atttttggtg gtgttgtgtt tattcttata
     2461 gaacttgcgc acaaaaataa acaatatcgt atcaattcct tagaagaaat aagctttaaa
     2521 caagcttttt gtataggtat ttttcaatct ttagccatga ttcctggcac ttcaaggagt
     2581 ggagcaagta ttattggtgg gcttttgtta ggatttaata gaaaagtggc tgctgagttt
     2641 agttttttgc ttgccattcc aacgatgatt attgctacag cttatagtat ttataaagag
     2701 cctgaattac tgagtaatgc aaattcttta attcctttag gcataggttt tatcactgct
     2761 tttgttgttg cggttttagt tataaaattt ttcttaaaat ttatttctaa attcgacttt
     2821 atcccttttg gaatttatcg tattatttta ggatttgttt tcttttattt gtattatagt
     2881 gggattttaa atgctggaag tgaatttaag ctataaataa atattaaact tattctaaga
     2941 ttttttttaa aaataagctg aatttcaaaa ataattaagt cttagaaagt taaaattaga
     3001 actttataaa cactcacagg gtaagtgagc gacaaagggt taaaaatatg gaaaaagaag
     3061 ttattgcgta tttggacaat gagacaataa ttgactctca aagtgtgaaa aatacaaatt
     3121 taaaagaaat ttattttgat aattctaaag aaagtttaga ggtaatccgt cattcttgtg
     3181 cgcatttaat ggcacaggcg attaagaatt tgtatcctga agctaaattt ttcgttggtc
     3241 ctgttataga agatggattt tattatgatt ttcgtgtaga aagtaagatt ggcgaagaag
     3301 atttagtaaa aattgaaaaa aagatgaaag aacttgctga agcaaagatt gaaatttcaa
     3361 aatatgaaat cacaaaaaac gaagctttgg ctaaatttca aaatgatgat ttaaaacaag
     3421 aagttttatt gcgtattcct gatggagctg taagtattta taaacaaggt gaatttgaag
     3481 atttgtgtcg tggtcctcat gtgccaaata cgaaattttt acgctttttt aaactcactc
     3541 gtgttgcagg agcgtatttg ggtggcgatg aaaaaagaga aatgcttact cgaatttatg
     3601 ggactgcttt tgcagataag gaaagtttaa aagagtattt aaccattatt gaagaagcta
     3661 aaaaacgcga tcatagaaag cttggaacag agcttaaact ttttactttt gatgatgaga
     3721 tcggaggtgg tcttcctatc tggttgagta atggtgcaag acttagatct aaacttgaac
     3781 atatacttta taagatccat cgtttgcgtg gttatgagcc tgtgcgtgga cctgagcttt
     3841 taaaagcaga tgcatggaaa atcagtgggc attatgcaaa ctataaagaa aatatgtatt
     3901 ttacacaaat tgatgaacaa gaatatggta ttaagcctat gaactgtgtg gggcatatta
     3961 aaatttatca aagtgatgta agaagttatc gtgatttgcc tttgaaattt tttgaatatg
     4021 gcgtggtgca tcgtcatgaa aaaagtgggg ttttgcacgg actttttaga gtgagagaat
     4081 tcactcaaga tgatgcacat attttttgta tgccaagtca gattaaagag caggttttag
     4141 aaattttagc ttttgtggat aatttgatga aattatttga ttttagctat gagatggaaa
     4201 tttcaactaa acctgaaaaa gccataggtg atgatgaaat ttgggaagtg gcaactaagg
     4261 ctttaaaaga agctttagat gaacaaggtt taaaatacgg tattgatgaa ggtggcgggg
     4321 ctttttatgg gccaaagatc gatattaaaa tcaccgatgc cttaaaaaga aagtggcaat
     4381 gtggaactat acaagtagat tttaacctac caagtcgttt taaactcgaa tatactgata
     4441 gtgataatga aaaaaaacaa cctgtaatgt tgcatcgtgc gattttaggt tcttttgaaa
     4501 gatttatagg aattttaacc gagcattgtg cgggtgagtt tccatttttt atcgcaccaa
     4561 ctgcggtggg tatagtgcca ataggcgaag cacatattgc ttacgcaaaa gaaattcaaa
     4621 aagaattatt agagcttaat atcgatagcg aggtgtatga aaaaaatgag agtttaagta
     4681 agaaaatacg cacagctgaa aaacaaaaat tacctatgat tttagtttta ggcgatgatg
     4741 aggtggcaaa gcgtagcgtt gctttaagag atagaagagc taaagaacaa aaaaatctta
     4801 gcttagatga atttattaaa ttagttaagg agaaaatgag tgaggtacac ttttgagtaa
     4861 agaaaaagaa gtattgctca atgaagaaat aagagcggat gaaatcagat gtgttggcga
     4921 tgatggcaag gtttatggta ttattagtag tgatgaagct ttagaaattg caaatcgttt
     4981 aggacttgat cttgtaatga tagctgcaga tgctaagcca cctgtttgca agatcatgga
     5041 ctatggtaaa ttccgttatc aacaagagaa aaaacaaaaa gaagcaaaga aaaaacaaaa
     5101 agtgattgat ataaaagaaa tcaaactttc tgtaaaaatt gctcaaaatg atattaacta
     5161 caaggtaaaa catgctttag aatttttaga acaaggtaaa catgtgagat ttcgtgtgtt
     5221 cttaaaagga cgtgaaatgg caactcctga agcaggtgta gctttgcttg aaaaaatttg
     5281 gactatgata gaaaatgaag ctaatcgtga caaagagcca aattttgaag gtcgttatgt
     5341 aaatatgctt gtaactccaa aaaaagctta atccactttt gtggataagg cttttaaagg
     5401 ttttaaattt tgaaagaaaa tccttctttt ttaaaagagc aaattataac ttatcttgga
     5461 aataaaagag cgcttttaag ttttttaaat aagggcttta aggtagctaa aaaagaactt
     5521 ggtaaagata aatttagttt ttgtgatata tttagtggct caggtgttgt aagtcgtttt
     5581 gcaaaagcgc actcaaatta tattttagcc aatgatttag aggattattc aaaactcatc
     5641 aatgagtgtt atcttgccaa taaagacaaa gatttacttc aaaatataaa aaagcattat
     5701 aaaaatttaa tccaaaattt agattttcaa aaaggtttta tcagtgagct ttatgctcca
     5761 aaagatgatg atgatattaa aaaaaatgaa agggtttttt atacttttaa aaatgcttta
     5821 tatcttgata ctataaggca aaaaatcgaa aatgaaattc caaaagaatt gaggcatttc
     5881 tttatagctc ctttgattta tgaagccagt gttcattcaa atactagtgg agtttttaaa
     5941 ggtttttata agggtaagga tggcatcgga aaatttggtg gcgaaggaca aaatgcactt
     6001 aaacgaatta aaggagaaat agagcttaaa atgcctattt tttcaaattt ttcttgtgaa
     6061 tttgaagtga tgcaaaagga tgcaagtatg cttgcaaaag aacttgattt ttttgatgta
     6121 gtgtatcttg atccccctta taatcaacac ccttatagtt ctaattattt tatgctaaat
     6181 ttaatcgcaa attataaaaa acctgaagaa atttctaaaa tcagtggcat tccaaaagat
     6241 tggaaccgta gcacttttaa taagccaaaa tttgcccaag atgctttatt tgaacttatt
     6301 aatgatttaa aagcaagagt gattttactt tcttataatt gtgaaggttt tgtaaaaaaa
     6361 gaaatttttt taaagcgttt aagtactctt ggaaaatgtc ggattttaga acaaaaatat
     6421 aatactttta gagcttctcg caatcttaaa aatcgtaata tccatcttca tgaacaactt
     6481 tatattttag ttaaaaatta aattttgtgc taaaattata tttataaaaa ggagggattt
     6541 atgaaactaa aattatcttt ttgtgcatta atggcatttg gtttttctaa ttatcttttt
     6601 gcttcggcca ttgatccaaa gttttatttt caagaatatc ttgattttgc tagcaataag
     6661 ggtaaatttc aagtaggtca aattggcttt gaaattttag caaaaaatcc taatcaaaac
     6721 atctctttca atgtacctat gattgatttt tctacttcaa atcgtggagg aaaattccaa
     6781 ggagaattta ccaatatagg acaatcttat atagtcagtg cttctcatat gagtacaagt
     6841 tcaaatactg gggaagtaaa taaaggctat gtgaaacaag gtagtgtttt acactttgga
     6901 ggtgtagcaa atagaatcgt aagctcaagt gataatttta cttataagaa agaaaatgtg
     6961 gattttgctg ttttaaaaat gagtaagatc aatctcaata aaagtgcaaa tttgagtaaa
     7021 gatttcaatt ttattgaaaa agattctggc gatggtggag atatttatga atacaaggat
     7081 cctttttggg atagttgtca aagtggaaaa tgtgattatt ctaaaggcaa aggcaagctt
     7141 tttgatagtt cgcgttatga gtactttgta agagagggaa gtggtattgt agctttaggt
     7201 tttgaagata caaataaagt acccattaag atttttgatt ctaatgaaat taatttagga
     7261 ggttttgtca gtttagctcc taaaaatact gaagataagc gttttaagtt gcaatttctt
     7321 aattatacca atgataaaag aaatcctttt acaagttctt caacacctgg ggattctgga
     7381 agtggagttt atgtttatga taagattgat aaaaaatggt atttagtagg tgtagtaagt
     7441 acgagtaatt gtaatgccca ttttactgat ggatatactt gttcacaggt tgattatgct
     7501 ttgatcaatc aagcaaagat caatgaattt caaaatagcc atagggttaa tatcgcacaa
     7561 ggcgtttata ctttaagcaa tcaaggtttg atgaaagaag ggcagttggt gcaaggtgtt
     7621 agcttaattt ctggggctaa tgcgggttat gtaagttatg aaaatatttt tggtgataag
     7681 gctaaatatg atgatagaat caaagaaatg caaaatagca aggatttgta tttttttcaa
     7741 aatggaagta taaatttaaa tagcgatgtg gatttaggcg ctagtgtttt aaattttgaa
     7801 caaaattcaa attggcaaat aacaggcgat aaatggctta tacatggagg aatttacgct
     7861 gataagggtt caagtataga atataatgtt aaaaccaaaa aagatgattt tctttataaa
     7921 atgggcgaag gagaacttat tgtcaaaagt caaagtgcgg atgcaggact taggatgggt
     7981 gagggtaagg taagtcttga gggtgaaggt ttaagttttg gtgaaattta tatgaatggt
     8041 ggaactttag ggtttaaaaa cgcacaaaat ttaaaaaccg acactttata tatgaatggt
     8101 ggaactttgg atctatcggg cttaacatta aatttttgat caaattaaag ccaattctaa
     8161 taatgttttt atcacaagct ctaaagcagg ggcaaattta aatttagaaa acaagcaaaa
     8221 ttatctttat tatggcaata ttttttcaga tgaggccata acaattagtg ctaatacaga
     8281 taaagctttg atttttgatg gcaatattta caataaagaa ggtgttttta aggcagaaaa
     8341 cgccaagtta aattttcaag gacatgctag aatacacgct tatgtaagcg aagaacaagc
     8401 taaaaaactt caagagcaag gtttaagtgc tttaaccaaa cctgtaagtt ttacacaaga
     8461 agattgggaa gatagggttt tttgttttaa aagagcttaa tttagaaaaa agcgagtttt
     8521 atttaggacg taatgcaagc ttaaaagtag aaaatcttaa tgctaaaaat tccaaaatag
     8581 agcttggaag taaaaatttg tggatcgatg aaaaagatgg ggaaaatatc actgataaag
     8641 ttcaagatag tttttatgga gacgttgcac aaacaggagt tggtaaagaa atgggatttg
     8701 agcaaaatct taaaaatacc caaaatgcta agatagaaaa ggtttatttt agtggaaatt
     8761 taaatcttga tcattctgat gctactttac aaaacatagt ttttagcggt aatattaaag
     8821 gtgttgatga tgcacaaaaa aatcttgtga ttaaagattc tttgcttgag tctaatatac
     8881 aaatgagtaa tattcaagca gaaaaaagtg ccatttatgg gaaagttgat gcaaaaaaat
     8941 taagtgcaaa taatacaata tttaaaatca atgtggattt tgaaaaatct aaggcagatt
     9001 atattaattc taaggaaagc gcgcaaggaa caaataatac tttagtatta aattttttaa
     9061 caatcctagc aaagaagcgg gtttaaatat attactagct catttaaaag atgaaaataa
     9121 acatttaaca aaggaatttt ttactatacc aaatgtggag caaggtttta gtatttatac
     9181 cccaaatgtt gttttttctt acaatgagga aaattttgcc cagtggaatt tagaaaaaat
     9241 tgattctaaa actaaagatg agtatttttt tactaatgat aatactcaag ctattgcaaa
     9301 agctaaatct atacttgctc aagctacttt gggctccatg atagaatgga ataatatgca
     9361 taaaagaatg ggagaattac gcaataatcc ttacgaaagt ggggtgtggt taagaacttt
     9421 tggtgggggt acgagtgatg agtataatag tggaaaatac tttgaaattc aaagcggata
     9481 tgataaatta aacgagtatt cgaatttcga gctttatagc ggggtgatga tcaattatac
     9541 aaatatgaat ttaagtgcta ctgatttgag tgcgaaatta aatggttatg gaataggaca
     9601 atattttagc cttttgttta atgaaggttt ttatagtgat tttgttttag atatatttat
     9661 tatcaaaatg aaataaatgc aaattttatt ccaggaaatc aaggtagatt agatgataat
     9721 gatggttcgc ataatattat cttaagtgct gagttaggtt atagaaaagc ttataataaa
     9781 ttttatcttg agccgagttt ggaatttatc agtggttatg taggagctat ggatctaaaa
     9841 ggagatattg ctagtttaaa acgattttct tatattcctt tagtcgtaaa aacagcattt
     9901 ttcataggaa gtcaaaatta aaatttaaat tttagaacag gacttggttt gtatgcggat
     9961 ccgattaaag caggagatca aatcttggag gatcaagcaa gtcagagaag atatgaagga
    10021 aaaaagatca aagaatgttt ataaatttag gaaatgatta taagcttaac gataaaacac
    10081 gctttagttt tgaatttgaa aagacatttt ttggcgattt aaatgtagat tggagtgcaa
    10141 atgctaattt aagatatagt ttttaaataa aaaataattt aaaaattgta tttttatttt
    10201 aagctttttt gtttataata cttgctttta catttaaagg atagagatga aaataaaagt
    10261 tgggatttta ggagcgagtg gttatgcggg aaatgaactt gttcgcattt tgcttaatca
    10321 tcccaaggtt gaaatttctt atttgggttc gagttctagc gtggggcaaa attatcaaga
    10381 tctttatcct aacacccctt taaatttatg ttttgaaaat aaaaatttag atgaacttga
    10441 acttgatctt ttgtttttgg ctactccgca tgaatttagt gctaaacttt taaatgagaa
    10501 tttattaaaa aagatgaaaa tcattgattt aagcgcggat tttcgtctta aaaatcctaa
    10561 agattatgag ctttggtata aattcactca tcctaatcaa gagcttttgc aaaatgcggt
    10621 ttatggactt tgtgagcttt ataaagaaga gataaaaaaa gcaagtttag tggcaaatcc
    10681 aggttgttat accacttgtt ctatcttaag tctttatccg ctttttaaag aaaagatcat
    10741 tgattttagc tcagttatta ttgatgcaaa aagtggagta agtggagcag gaagaagtgc
    10801 aaaggtggaa aatctttttt gtgaagttaa tgaaaatatc aaagcttata atttagcttt
    10861 gcatcgccat actcctgaaa ttgaagagca tttaagctat gcagccaaaa agaaaatcac
    10921 tctacaattt acccctcatc ttgtgtctat gcaaagagga attttaatca gtgcttatgc
    10981 aaatttaaaa gaggatttgc aagaacaaga tatacgcgat atttatacaa aatactatca
    11041 aaacaataaa ttcataaggc ttttaccgcc gcagtcgctt ccgcagactc ggtgggttaa
    11101 atcaagcaat tttgcggata taaattttag tgtagatcaa cgcacaaagc gtgttattgt
    11161 gcttggtgct attgataatt taatcaaagg tgcagcagga caagctgttc aaaatatgaa
    11221 tttaatgttt gattttgatg aagatgaagg acttaaattc tttgcaaatt tgtaaaggat
    11281 aaaaatgtta atacgagcta tgcaaaaaag cgattatgaa gccgtttata agctttggtg
    11341 tgagataaaa ggctttggga taagaagcat tgatgatagt aaagaaaata tagaaaattt
    11401 tttagataga aacccaaatc ttagcgttgt agcagtgatt gatgaagaaa ttgtaggaag
    11461 tatactttgc gggcatgatg gacgcacagg aggattttat catgtatgtg tacataaaga
    11521 tcatagaaaa aagggcatag cgcacgagat gacaaaattt tgtcttgagg ctttaaaagc
    11581 tcaaaaaatc aataaaatcg ccttaatcgc ttttaaaaac aatgatttag gcaatgagtt
    11641 ttggaaacat tatggtttta ctttaagaga agatgcgaat tattacgatc tttctttaaa
    11701 tgagtataat caaactagct ttaatgctta aggaatgatc atgcaaaaat atttagaaaa
    11761 agctaatgtc ttaatcgaag ctttgcctta tatacgcaaa tttaattcta agattatact
    11821 tataaaatac ggcggatcag ctatggaaaa tgaagagcta aagcattgtg tgatgcaaga
    11881 tatagctctt ttaaaactcg tgggtttaaa gcctattatt gtacatggtg ggggaaaaga
    11941 tatttctgct atgtgtgaaa aattaggcgt aaagagtgag tttaaaaacg gtcttagggt
    12001 tagtgataaa gccactactg aagtagccag catggtttta aatcatatca ataaaaattt
    12061 agtccatagt ttgcaaaatt taggagttaa agtcataggg ctttgtggta aagatggcgc
    12121 gcttttagaa tgtgtgaaaa aagatgaaaa tttagctttt gttggcacga tacaaaaggt
    12181 aaattcgaaa attttagaag agcttttaga gaaagatttt ttacctatca ttgctcctat
    12241 tggcatggat gaggatttta atacttataa tattaacgct gatgacgtag cttgtgcgat
    12301 cgccaaggct ttaagggctg aaaaacttgc ttttttaacc gatactgcag ggctttatga
    12361 ggattttagt gataaaaatt ctttgatttc taaaattagc cttgaacaag ctaaaatttt
    12421 agcccccaaa atagaaggtg gtatgcatgt aaaattaaaa tcctgtattg atgcttgtga
    12481 aaatggagtc aaaaaggtgc atattttaga tggacgcgtg aagcattctt tattgcttga
    12541 gttttttact gatgaaggta taggcacttt ggtgggttaa aggatgaaaa tggattataa
    12601 agaacaaagt catattgtcc ctacttataa gcgttttgat atagttttag aaaaagggca
    12661 gggggtttat ctttttgatg ataaggctaa aaaatatctt gatttttcaa gtggtatagg
    12721 tgtttgtgct ttaggatata atcatgctaa atttaatgct aaaatcaaag ctcaagtgga
    12781 taaactttta catactagca atttatatta taatgaaaac atagccgctg cagctaaaaa
    12841 tttagccaaa gctagtgctt tagagcgtgt tttttttaca aattctggta cagaaagtat
    12901 agaaggagcg atgaaaacag ctagaaaata cgcctttaac aaaggtatta agggtggaca
    12961 atttatcgct tttaagcatt cttttcatgg gcgtacttta ggggctttat cgcttactgc
    13021 taatgaaaaa tatcaaaagc cttttaaacc tttaatttca ggggttaaat ttgcaaaata
    13081 taatgatatt tcaagcgttg aaaaactggt gaatgaaaaa acttgtgcca ttatcttaga
    13141 aagcgtgcaa ggagaaggtg gaataaatcc tgcaaataaa gatttttaca aagccttaag
    13201 aaagctttgc gatgaaaaag atatattatt aatcgctgat gaaattcaat gtggcatggg
    13261 tagaagtgga aaattttttg cctatgagca cgcgcaaatt ttgcctgata tcatgacttc
    13321 agctaaggcc ttaggttgtg ggcttagtgt gggtgctttt gtaataaatc aaaaggtagc
    13381 aagcaattct ttagaagtag gcgatcatgg tagtacttat ggtggaaatc ctttagtttg
    13441 tgcaggagtg aatgcagttt ttgaaatttt taaagaagaa aaaattttag aaaatgtcaa
    13501 taaactcacg ccttatttag agcaaagttt agatgagttg ataaatgaat ttgatttttg
    13561 taaaaaacgc aaaggcttag ggtttatgca agggctgagt cttgataaaa gtgtaaaagt
    13621 agctaaggtc attcaaaaat gtcaagaaaa tgcactttta ttaataagtt gcggggagaa
    13681 tgatttgaga tttttacctc ctttgatttt acaaaaagaa catattgatg aaatgagtga
    13741 aaagttaaga aaggctctaa agagttttta ataaattttg taaaaaaatt ttattctttt
    13801 ccatctacta taggcacaaa taaacattct tctaaaattt ctttttgtaa atttgtgcca
    13861 ttttttctaa ggcgtgtgat gaattgtttg ccattgtgta aaataggagc gactaaaata
    13921 ccgtcatcgc ttaattgatc aagtaaaatt tcaggaattt gtgtcgcata agcagaaaat
    13981 aaaatcctat cataaggagc ataatttttc cagccatttt gtccatcatc aaattttaca
    14041 ttgatattaa aaagttctaa ttctctgaaa gtttgagcgg cttttttggc taaattttct
    14101 atgcgttcta tggtaaaaac acgccttatg actttgctta aaatcgcagc ttgatagcca
    14161 cttccacaac ctatctctaa aatactatca gcatttttaa aatctaaagc catagtcatt
    14221 ttagctacag ttaaaggtga actaatccat tgagaatttg ctaaaggcaa agcatcaagg
    14281 cgataagcat gggcttttaa aggagaaaaa atttcacgtg gaatttgaca aaaagcatta
    14341 aaaagttctt cattgataaa aactttttgt gcaatttctt cagccatatt ttgacatctt
    14401 ttttgttcaa atgtgttcat tacttctcct ataaatttaa ataaaaattg taactaaaaa
    14461 agttgaaata gagttaaact tagctatact taaataaaaa ggaaaaaaat gcttataaaa
    14521 tttaaaaatc atagtcccaa actaggtcaa aatgtttttg ttgcagaggg cgctaaaatc
    14581 ataggagaaa tagaaatagg agatgaaagt agtatttggt ttaattgtgt tttaagagcc
    14641 gatgttaatt ttataaaaat tggcaaaaga accaatattc aagatcttag cacggtacat
    14701 gtttggcata gggaatttga taaaaaagga aagttaaaag atgctggttt tcctacgata
    14761 ataggagatg atgtaactat aggacataat tgcgttatcc atgcttgtgt gataaaaaat
    14821 cgtgttttaa tcggaatgaa tgctgttatc atggatagtg ctttgataga agaagatagc
    14881 atagtgggtg ctggaagcgt tgtaacaaag ggtaaaaaat ttccgccacg ctctttgata
    14941 cttggaaatc ctgcaaaatt tgtgcgtgaa ttaaataatg aagaaataaa ctttctaaaa
    15001 caatccgctt taaattatgt ggattttaaa aacgagtttt taaaagatct tcagtgatat
    15061 tttgaagttt aggcgagagt tttacttcaa atttcacaaa acgatcaaga tctaaaaaac
    15121 tctcatcgag ttttgaaatt tgctcttttg tataatcttg aatagtattt aaagatgact
    15181 ttttaagaag tcttttttct ttgtagacta attctaaaag ttctttgcgt tctaaatttt
    15241 catcttgatt tgggttttcg tcaaaaacat aaagctcatc aaaaaggatt ttttgcgtgt
    15301 ttttatcata aaccctaaaa agctttttaa aatgaggtag ggttgatttt tcgttatttt
    15361 cgctgatttt gattttaggt tttatgcctt gatcttctaa ggctgcgagt ttataaacgc
    15421 aactaaaaat aggatcgctt gaagcagtga tcaatctttc gcctacacca aagatatcaa
    15481 taggtgcatt ttgttctttg agttttttaa tactccattc atcaagggcg ttagaaacta
    15541 tgattttaca tttttgaagt cctgcttgat caagttcttg tctgattttc aaactcaact
    15601 taagtaaatt tccagaatct attctgacac cgccttcttg gataccaaat tctttaaaaa
    15661 ctttaatcgc atttttaagt ccgctattta gacaatcata agtatcgatc aaaaaaacag
    15721 gattttttgg ataaattttc acataagctt taaaagcttc aagttcattt tcaaacattt
    15781 gcacccaaga atgtgccata gttccattga tagggatatt ataaattttt cctgctaaag
    15841 tacaagcact tcctatgcaa cctcctataa aagctgctct tgctcctttt aaggctgctt
    15901 cacttccttg tgctctgcgt gaaccaaatt ctaaaatttt actgtcttta gctgcacgca
    15961 cgatacgatt ggttttggta gcaataaggc tttggtggtt taaacttaaa agtaaaaaag
    16021 tttctaaaag ctgtgcttct atggttgtag ctttaacgca aagtaaaggt tcgtttggaa
    16081 aaatcacttc tccttcgcgc atagcataaa tttcaccctt aaatttaaag ttagttaaaa
    16141 aatctaaaaa ttctgtatca aaaatacctt gttttcttaa aaattctata tcttctgcat
    16201 caaaactcaa attttcaaca aagtctaaaa tatcttcaag acctgcaaaa atagcaaaag
    16261 aacctgaatc tggaattttt ctaaaaaata tatcaaaata acaaatttga ttttttttat
    16321 tgtttttgaa atagccttga gacattgtaa attcataaaa atcacaaagt aaggctaaag
    16381 aagttttaga agtcatcaaa gcttatacta cccttagaat aattcgttac tttactttca
    16441 aagaaattgc tcttttgatc gttaaatttt gaaaaatcat ctacccattt aataggatgt
    16501 tttgcattgt ataacttatc taaattgatc gcacttaatc tttgatctac aagataatgg
    16561 atatattctt ctatgatatc atcagtaaag cccatgattt gattttgagt gatgtattta
    16621 ccccatttga tctcaagatc tccagctttt ttaaacatat cataaatttt attgatattt
    16681 tcatcatgga acaaatcagg tctttctttg cgtactgaat tgatcatatt ttgaaataat
    16741 aaaagatgtg tgatttcatc tctttggata aagcggatca tttgtgctga acctagcatt
    16801 tttcctgcac gtgcaagtgc gtaaatggca gtaaaaccac tataaaaata tactccttct
    16861 aaaatttgat ttgccaccat agccaaaaga agtttattat catctacatc gcctgctaat
    16921 tcttcataaa tgcttgaaat aaagtcattt ttttcacgca aagtttcatc atgcttttcc
    16981 atttcataaa tcaaatctgt attatcgcaa atcgcttcaa ccataacagc gtaagatttt
    17041 gaatggtttg cctcttcata agcttggcgt gctaaaaccg cattgatttc aggagctgtg
    17101 atgtaagggt tgatattgtc tgctaaatta ttggtttgaa aactatccat agaaataagc
    17161 tgactccaaa ccaaatcata cattcttttt tcacctacag ttaaattaca gcgataatca
    17221 agtgcatctt tagttgtatc cacttctttt ggaaaccaag tatttgcctc cattaaatcc
    17281 caaagtttta aagcccaggt atattttgcc ttagtgaaat ttaaaattcc atgtgggtta
    17341 ccatcaaaaa ttttacgatc tcctagggtt tcgtttgagt ttggattgta aattcttttt
    17401 ctttgcattt ttaacctttc tttatgcttt tagtagctat acaactttga gttaaaatat
    17461 cgtgtaaatt taaacgatct tttcttacaa aactgacaaa taaaccaaag agtaagccaa
    17521 aacttataat aaatatcaca tatcttagta aaattctaag aaaacttagt ttctttcccg
    17581 tttttatatc aataagatat aaatcatatg ctttaagacc tgggctttgt gccttttttg
    17641 ttaaaaaaat agcttgaatc aagccaaata aaaaagtaca taaagttgtg ataaaatggt
    17701 tgtttaaaaa agcttcttta gagcctaata gaaaataaaa taaatacaaa ataggaatat
    17761 aaataagaaa aatatctata agcaaagctc taaatcttag ccatctagag ctaatttttg
    17821 ctttagtttt catttaattt ccacgacttc ctggttttat agctttactc ccttttttac
    17881 aaagtggaca atttgtttca tcgtaaattt caaattcaaa atttcctaga gtaaagagtg
    17941 gtaaattttc aggtaatttc gcattatctt ttcttggaga ttttaaattt tctactgcac
    18001 aaaaaccacg atttgccaat gctgcaaaac ctacaacaat gccacctaaa ctttcaatga
    18061 tttttgcact ctctaaagca ctaccacctg tagtaatgat atcttcacaa attataaatt
    18121 tttcactctt ttttacctca aaaccacgtc ttaaagtcat ttctttattt actctttcgg
    18181 taaagacaaa acgtttacta caagctcttg caagctcata acctgctaaa attccaccta
    18241 aagcaggaga acaaatgcta tcaaattcta tcttatagct tgtaataatc tttgcaagtt
    18301 catcacaaag ttttgctgct aattttggat cctctaaaac ttttgcactt tgaagataaa
    18361 attgcgaatg tttacctgaa cttagtaaaa aatgcccttc taaataagca ccacaatctt
    18421 tataaatttg ctctaaattc atcgttaaac ctttaaaagt tcactttctt tgttttttac
    18481 actctcatca atttttgttg tataggtgtc ggtaagtttt tgcacttcat cataagcttt
    18541 ttttgcttca tcttcgctta ttgccttatc tttttctagt tttttaactg catcgttggc
    18601 atctttgcgt atatttctta tagaaacttt tgccttttca cccatagctt tagcttgttt
    18661 tacattttct tctctttgct ctctagtcat cggagggaaa aataatttta cactttcgcc
    18721 gtcattgttt ggatttacac cgatatttgc agctgcaata gcgctttcta tggtttttag
    18781 taaaggtttt tcccaaggag taatactaat agttgaagca tcacttgcta aaacagttgc
    18841 tacttgattt aaaggagttt gagttccata ataatccact gtaatatgat ctaaaatatg
    18901 ggtattaact tttccagttc ttaaagtggt gaagtctttt tttaaggctt ctaaagattt
    18961 ttcactttgg gttttttgtt tgttaaaaat ttcatttagc attatcattt cctttaatta
    19021 tttacttgaa ttaacatcgc ttggaagttg tggtgcactt ggagcgatag aatttgtgtt
    19081 tggggtagca ggcacaatag gagcacttgg aatagtagta ttgttgtttt ctactttaat
    19141 tttctctgct agagagtctt tgctagcttt attgtataaa taaccaagac caatagtatt
    19201 tgcaataagt aaaattccca taacaaaggt aaattttgcc aaaaatccag ctggtccttt
    19261 ggcgccaaat aaactttcat tgcttccact ataagctcca agtcctatac ttgaactttt
    19321 ttgaagtaaa actgctatac aaataactac aacgatgata aattgtaaaa tgattaaaag
    19381 agtgatcatt gaaaattcct aaaagttaat ttttaaatga ttattttagc taaataaaac
    19441 ttgaaaagtt ttgaaacttg aaaagttttt gtgagaaaaa tcccacaaaa atttatctgc
    19501 tattgaagct tcttaagata ttaagtaaag atacgaaaag attaacaaaa tcaagataaa
    19561 gtgctactgc accttcgatt ggagtttcat aatttccgcg gataatattc tgcgtatcat
    19621 aaagaatgta aaatgaaaat aatattgcag ctactgctga aatagctaga ttaactatac
    19681 tgctttggaa gaaaaggttt agtaaagatg ctgctacaat aacgatcaat actataaata
    19741 aagctttgcc cataacagta aaatcttttt ttgtattcat agcaaatacg ctaagtcctg
    19801 caaaagcaac cgttgttaaa gcaaaagctt gagcgatgat aattcctcca gctggtagag
    19861 ctaaaactga aataagtaaa ggtgtaagcg ttaaacctga gcagaaagta aaaccaaaaa
    19921 gtaaaacaag atttaatgga gcctctcttt ttttccattg caaagcaaat aaaagtccga
    19981 tttcaacagc aaaaaggatc caaaaagtta cttgtgattg tataaaaaat gatgctaaag
    20041 caaaaattcc tacatacgca cctactgttg cagctaataa tgaagcagca aaaagttgat
    20101 aagtttgttt aataaaaata cttaattcgc ttgagcgtgt attttcaaat tcttttgatc
    20161 ttgagtagtc tctatcataa agactcataa aattctcctt gcaaaattgt tagatttttt
    20221 aaaatcttga gcgaaatcta acatattaga ctaaataaaa agttaattta tataatatct
    20281 tatgcttaaa tgaaatcttt gctgaaattt tgttataatt tcaagatttt agtttcaggt
    20341 tggttttatg gaaaatctta ttagcggtgc gattaagttt atgcaagaag actttaagga
    20401 gcatgaagaa ctttttgaaa gtctaaaaaa taagcaaaat ccccatactc tttttatagg
    20461 ttgttctgat tctagagtaa ttccaaattt gatcactaat acgggtccag gtgagctttt
    20521 tgtaatacga aatattgcaa atatagttcc accttatcgc gttggagaag attacttggc
    20581 gacaacttca gcaatagagt atgctttaaa ttcattgcat attaaaaata tcgtcgtttg
    20641 tggccatagt aattgtggag gttgcaatgc tctttattat tctgatgaag agttaaataa
    20701 aattcctaac gtgaaaaaat ggcttactat gttagatccg ataaaaaaag atgtgatgat
    20761 ttttgcaaga gacgatttgg ctatgcgttc atggcttaca gaaaaattaa atttagtaaa
    20821 ttctttgcaa aatatactta cttatccagg cgtgcaagaa gctttagatg aaggaaaaat
    20881 agaagtacat gcttggtatt atattataga gacaggtgaa atttatgagt atgattttaa
    20941 agcaaaaatt tttactttaa tacaggatag gaaagttcaa tgaaaaaaat tatttttagt
    21001 ttatgttttt ttattttata ccttggagca caagaattta aatttattga tgcaaatatt
    21061 agcaaagagg atgaaggaat ttatgcttta gttgaaaaat atgttgatct taacaatcaa
    21121 attaaagaat ttaagaaaaa caatgatgaa aattcaagca cttttaatgg tattttaagt
    21181 gaatttgaaa aagacaaaaa gactatttta gcaaaaatac ccgatatgat agtaggacaa
    21241 aagattaatg aagaggcagt ggctagattt ttaaaagcaa aagaaaaatt actagatgtt
    21301 caaaaaaaga atattaataa gccttatatt tatacagatg ctactcttaa tctagtttat
    21361 tttaatattg tggaaagttt ttattcttct ttgtttgaag tggaaaaact ttttaaaaat
    21421 acagcaagca gtgaagattt gattgctact gttgataagg caatggaaaa tttacaaaat
    21481 tcttctaatg ttaatttaga tagttttaaa agcaaaatta caaatccaga agaattagaa
    21541 aaaattaccc taaaagaaag atatatcagt aatgctgtag attcttattc tgaaattctt
    21601 aagtatttac gctcaaatgc agatttgctt gaaagtaatt atattttttc attactcgag
    21661 cttcaagttt ggatagatcg tataaatgag gcaattggga taagttttgt taatatcgga
    21721 aaaatagtaa tttctgcttt ggttttagta ttttttatat ctttaagacg tttttttgca
    21781 aatatagtat attttttcct tgttcagctt ttttatagaa ataaaaatga tgtagatgat
    21841 attaaagtca tttttattga gaatattaaa aaacccgtag gtttcttgtt gattgtctat
    21901 gctatttctc tttgtcttac tatagcaact tatcctgcac ctttgagtgt aaatttaagt
    21961 aatttttttc atatagttta tgcagtttta attgcatggc ttattttaag aatgcttgat
    22021 ggttatggcg tggtattggt ttctaaactt gctcaaaaaa gtggaaaaaa agaagttgta
    22081 aatttaatta ttaaaatttt atattttgtc attattatca tagctttatt atatattctt
    22141 gctcaacttg gttttaatat ttcggctatt attgcatctt tgggaattgg tggtttagct
    22201 gttgctttag cggcgaaaga tatcattgca aatttctttg cttctatact cttacttttt
    22261 gataatagct ttaatcaagg agattgggta gaggtttcag gcatagaagg aaccgtggtt
    22321 gaaacaggac ttagaaaaac tactattaga acttttgata attgtcttgt atttttacca
    22381 aattcaacta ttatgggagc taatatcaaa aattggagca aaagacgcat gggtcgccat
    22441 gttagaatgt atttgggtgt tggttatgat gctactcctg aaaaactaga acaatgtgta
    22501 aaagatctaa gagaattttt gcatacaagt gatttagtag ctcacgatga ggatagcgca
    22561 ttaaaatatg gcgatcatac aacaaaatat cgtcaaaatc ttgtatctat taatgattta
    22621 gaaggctata aaaatgcttg ttatgtggct ttaagtgaat ttgcagatag tagtattaat
    22681 atagagcttt atttttatac caaagaaata ggcggaaaag attttagaga agctagacaa
    22741 agtttaatgc ttgagtttat gcgtataatt gaaaaaaatg gtttaacctt tgctttccca
    22801 agtcgtagta tttatataga aaatttacca ccccttgatt tgcaagcaaa agctataaaa
    22861 tagcaagatt ttatcttgct atttttttaa actggcataa cgcgtatatt tggacttaat
    22921 tcttcttgta aaattgtttc aatagcataa agtgttgcac cacttccact agaacaacca
    22981 ctacaagcac caagataacg aatataaaca tcaattgctg caccttcagc cttttgtata
    23041 tcaatcactt ccaaatctcc accatcatta tgaagcatag ggcgaatttc agcatctaaa
    23101 acactttcaa ctgcttttaa ttgtcccact acggtcattt catcaaaagc cacatcactt
    23161 ttcattgtat ttttgagttt ttctctatct atttcagctc tagtttcagc taaaatatct
    23221 acaaggtaat aatctctttt ttcatgtccg cctggtttga tacaggattt acaaaaagca
    23281 cccgctttag tatattgtgt gatttcttct acgctatgca aatcattaag tttaatcact
    23341 tctttaatag ttccaagact taccctagcg cactcgcaaa ctataatttg atcttcaaaa
    23401 tcttcaggac ttataccttt ataatgcgct gctgcttgtt tgattacatc ataagccata
    23461 accgaacagt gcattttttg aggtggaaca gctggagttt ctggattatc acgcatagca
    23521 aattccacat ctaaatttgt gatttttact gcttcatcta cagtttttcc tatacaaaga
    23581 tccaccatag tatcactact tgctatagct gtaccacaac caaaactttt aaattttgca
    23641 tcgataattt tatcagtttt ttcatctaca agccaaaaaa gtcttaccgc atcgccgcaa
    23701 ctttctgcgc caaaatcagc tacgatcaat tttgcattgc gtgctttagc atcttcttca
    23761 ctaaattctc ccatatgttg aggattattc attctatctt gaactttttg tgaatactca
    23821 tcccaaatgg atccaccaat taaactattt tttcccattt ttcatcctta tttgtaatta
    23881 tttggattat aagcataagt gcaagaaatt gctcttaatc tctgtgttgc atttttaatt
    23941 tgttttgctg cataatcaat ttcttcttca gtgttaaaac gtgacaaaga aagtcttaaa
    24001 gctgtgtgcg ctaaatcatg ttccgcaccg atagcttcca taataggatt gctttctaaa
    24061 gcttcgcttg cacaggctga gcccgtactt gcagctatac catttttatt taaatcccaa
    24121 agcatcgctt cgccttcaac gcctttaata cttgctaaga ttgtattagg cacacggtgt
    24181 tccctttttc caaccactgt tgtatcaggt aaagctaaaa tttgatcttc tagtttatct
    24241 cttaaacggc gtatatgaga atcttcaaaa tcaagcatag tatttgcaat acgcaaagcc
    24301 tcgcccatag ccactatgta aggtacattt aaagttccgc ttctacgacc acccatgtgt
    24361 tctccaccgt gtaaaagtgg agtaagttta agtccttttt ttataaaaag tccacccaca
    24421 ccctttggtc catgaaattt atgtgccgaa aatgaagcaa aatcaactcc tacttgagtt
    24481 aaattaacct ttattttacc tactgcttga gtagcatccg tatgaaaaag agcaccaaat
    24541 tcatgcgcaa gttctgccat cgctttaata tcaaaaatca tacctgtttc attatttgcc
    24601 cacataacac ttacaagcgc tgttttatcg ctaatcactt tacgcaaatc ttctacagta
    24661 gaaacccctt cttcatttac aggaagttct atgactttta ctccaagact ttttaaaaaa
    24721 taagcagcag cagcaacggc agggtgttct acgctagaaa taatcacttc attgcgttct
    24781 ttatctaaaa tatgatcaaa atacacaccc ttaagcaccc agttaatgct ttctgtcgca
    24841 caggaggtta caactatgtc atctaggtca tttgctccaa gtcctgcata aagtttatcc
    24901 aaagcttctc ttaaggcagg atgtgttgcg ctaccatatt gatgaaggct atttggattt
    24961 ccatacatat cctttaaaaa aggtagcatc aactcataag cattaggatc aagcattgtc
    25021 gttgcgttgt tatctaaata tactttcact ttaaaatcct taatttatcc ttaattttaa
    25081 ttaggatatt ttttatcttt atttgaaaac ggataataac aaaaatttat aaaa
//
LOCUS       DAZAND010000012        24965 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.012, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000012 DAZAND010000000
VERSION     DAZAND010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24965
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.012"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..239)
                     /locus_tag="ACHDOB_000379"
     CDS             complement(<1..239)
                     /locus_tag="ACHDOB_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325321.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEISSQTHSSDNAST"
     gene            154..1155
                     /gene="mltG"
                     /locus_tag="ACHDOB_000380"
     CDS             154..1155
                     /gene="mltG"
                     /locus_tag="ACHDOB_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HFN3325322.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSSIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLELDKDMLLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            1235..1666
                     /gene="flgB"
                     /locus_tag="ACHDOB_000381"
     CDS             1235..1666
                     /gene="flgB"
                     /locus_tag="ACHDOB_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030694 - bacterial-type flagellum basal
                     body, rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HFN3325323.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDNKELQLAVTEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1676..2170
                     /gene="flgC"
                     /locus_tag="ACHDOB_000382"
     CDS             1676..2170
                     /gene="flgC"
                     /locus_tag="ACHDOB_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030694 - bacterial-type flagellum basal
                     body, rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HFN3325324.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            2177..2473
                     /gene="fliE"
                     /locus_tag="ACHDOB_000383"
     CDS             2177..2473
                     /gene="fliE"
                     /locus_tag="ACHDOB_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HFN3325325.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2480..4288
                     /locus_tag="ACHDOB_000384"
     CDS             2480..4288
                     /locus_tag="ACHDOB_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan D,D-transpeptidase FtsI family
                     protein"
                     /protein_id="HFN3325326.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDECLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(4285..6054)
                     /locus_tag="ACHDOB_000385"
     CDS             complement(4285..6054)
                     /locus_tag="ACHDOB_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005436 - sodium:phosphate symporter
                     activity [Evidence IEA];
                     GO_process: GO:0044341 - sodium-dependent phosphate
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HFN3325327.1"
                     /translation="MQEERNSLKYFKFISWSIFTLVLIFILIRYDELANLLAGVAILL
                     IGMTNLGIGFKAFSGGLLEKILAKSTDTKIKSILFGTLSTLIMQSSTLVSIITISFLS
                     AGLISLGAGIGIIFGANLGNTASSWLIVGLTNIKISMLAIPLLIIGVLFFFQKDSVLK
                     GLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAGFKGVFVFLGLGALLTGVIQ
                     SSTATMAIIVAALLAGQISLENSLAATLGTSVGGVVTAVLASLSTNIEGKKLAFANCI
                     FNFGIAFLIVLIFPYFIHFLNFLSIVLNIEDIALKVALFHTLFNLIGVVLFSFFTPQI
                     VLFLNKIVKAPKDKNKDKPLYLDSSLVKFSDTAIKALRKESEHLYNNTYAIVAHAIGF
                     SRKDIQSDKSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFSTKAQVYINDETK
                     NHKIFTFKMAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKIRSNLGELLRSIE
                     ELRVVEDREKLYLIIKNLQKGKEILKEIDTLTLGNVEHLISVRKITTAEGISILNDTT
                     FAAKIAEELIGAVEVIFSKDISN"
     gene            complement(6058..6492)
                     /locus_tag="ACHDOB_000386"
     CDS             complement(6058..6492)
                     /locus_tag="ACHDOB_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325328.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDEQTLLEPIKMDIYPKF
                     CDLIDEKIREFKENVQNANLALKNSDQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMNEFEKLKG"
     gene            complement(6492..6809)
                     /locus_tag="ACHDOB_000387"
     CDS             complement(6492..6809)
                     /locus_tag="ACHDOB_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HFN3325329.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAERLGLESINLDGGMLAL
                     KGY"
     gene            complement(6806..8632)
                     /gene="htpG"
                     /locus_tag="ACHDOB_000388"
     CDS             complement(6806..8632)
                     /gene="htpG"
                     /locus_tag="ACHDOB_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HFN3325330.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDANK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKVEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            complement(8705..9073)
                     /gene="crcB"
                     /locus_tag="ACHDOB_000389"
     CDS             complement(8705..9073)
                     /gene="crcB"
                     /locus_tag="ACHDOB_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1903425 - fluoride transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:1903424 - fluoride transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HFN3325331.1"
                     /translation="MLNTLLVVGFGGFIGAILRMFSINLVNKFFPYSISLGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALN
                     IILNVFLCLFAAWLGFIIFK"
     gene            complement(9067..9759)
                     /locus_tag="ACHDOB_000390"
     CDS             complement(9067..9759)
                     /locus_tag="ACHDOB_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFN3325332.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVVFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSVKILDTKSFSASSGVLKIICMDLVDTNDDKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(9740..10936)
                     /locus_tag="ACHDOB_000391"
     CDS             complement(9740..10936)
                     /locus_tag="ACHDOB_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325333.1"
                     /translation="MKILLTLIFSVVVLFGRGEISVFGGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYTLWFLAVLFGALFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(10908..11580)
                     /gene="purQ"
                     /locus_tag="ACHDOB_000392"
                     /pseudo
     CDS             complement(10908..11580)
                     /gene="purQ"
                     /locus_tag="ACHDOB_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343946.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
     gene            complement(11582..11827)
                     /gene="purS"
                     /locus_tag="ACHDOB_000393"
     CDS             complement(11582..11827)
                     /gene="purS"
                     /locus_tag="ACHDOB_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HFN3325334.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSIIEDYELVIEKE"
     gene            complement(11836..12546)
                     /gene="purC"
                     /locus_tag="ACHDOB_000394"
     CDS             complement(11836..12546)
                     /gene="purC"
                     /locus_tag="ACHDOB_000394"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HFN3325335.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12548..13882)
                     /locus_tag="ACHDOB_000395"
     CDS             complement(12548..13882)
                     /locus_tag="ACHDOB_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HFN3325336.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            14000..14290
                     /locus_tag="ACHDOB_000396"
     CDS             14000..14290
                     /locus_tag="ACHDOB_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HFN3325337.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAVEENDIQSIEELNKAIDMFMK"
     gene            14402..16975
                     /locus_tag="ACHDOB_000397"
     CDS             14402..16975
                     /locus_tag="ACHDOB_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN3325338.1"
                     /translation="MANIQNFLTDNMLSNLESAASLAIHSKNNEVAPLHLLWALSVDS
                     TSILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLVSESQKSPTKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDVV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(17003..18934)
                     /locus_tag="ACHDOB_000398"
     CDS             complement(17003..18934)
                     /locus_tag="ACHDOB_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HFN3325339.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTASLGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(18931..19482)
                     /gene="maf"
                     /locus_tag="ACHDOB_000399"
     CDS             complement(18931..19482)
                     /gene="maf"
                     /locus_tag="ACHDOB_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HFN3325340.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLDKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITHQVGNLSTALGLDIQTLKAYL"
     gene            complement(19482..22010)
                     /gene="alaS"
                     /locus_tag="ACHDOB_000400"
     CDS             complement(19482..22010)
                     /gene="alaS"
                     /locus_tag="ACHDOB_000400"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HFN3325341.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEFLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGEEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELLMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLKNTPFYATSGGQSADSGFMAKREVL
                     DTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALSKEELENIEKRVNEMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            22125..23198
                     /locus_tag="ACHDOB_000401"
     CDS             22125..23198
                     /locus_tag="ACHDOB_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HFN3325342.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGAKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRALDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQTYNANLKNCQIPQIDPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            23203..24069
                     /locus_tag="ACHDOB_000402"
     CDS             23203..24069
                     /locus_tag="ACHDOB_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HFN3325343.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLAIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSVKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQANHLASTSD
                     AYKVQEILERFA"
     gene            24066..>24965
                     /gene="hemH"
                     /locus_tag="ACHDOB_000403"
     CDS             24066..>24965
                     /gene="hemH"
                     /locus_tag="ACHDOB_000403"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HFN3325344.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCNKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNESDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLISCPNDSDEFMEFILNSIN"
BASE COUNT         8814 a         4095 c         3544 g         8512 t
ORIGIN      
        1 tctgttgaag cattatcaga agagtgagtt tgtgatgaaa tttcggaatt ttgagtctca
       61 tttatagtga tattttttgc tcgtacaatt aattttttat ctaatttaat atataattgt
      121 tccaatttta aaaaatcaaa ttggatacta gagatgacaa tcccattttt aagcactata
      181 aacaaagcta atataagcac aacaaaaaat acaacaatat ataaaatttt ctttttcata
      241 cgcaacttct ttttgatatt tattttgggg attttttatt atctaactca gcctttaaaa
      301 agcaattctg tggtatttat tccccaaggt tcaatttctc aaattataac atatttaaag
      361 caaaataaat atcagatgag tagtattgat aaatatattt tatttttttt aggacaccct
      421 caatcaggct ggatcaacat aggtacaaaa gatttaaata gggctgaatt tctacataaa
      481 ctcactattg ctaaagcagc gcttcaaacc attactctta tcccaggaga aacaagcgta
      541 atctttttag aacaagcagc caaacaactt gaacttgata aagatatgct tttaaaagaa
      601 tttcaagctc aagctcctta tgatgaagga gtttttttac cagaaactta taaaatccca
      661 aaaggcatta cagaaaatct actcatccaa atgcttttaa accatgctga aatttccaat
      721 aaaaaaactt ctgagaaaat ttttggtgac tataatccaa aaaaatggca ccaatatatc
      781 atcatcgctt ctgtaataca aaaagaagct gctaatgaca atgaaatgcc tatagttgca
      841 agcgtaattt ataatcgact taaaaaaggt atgaagcttc aaatggatgg aactttaaat
      901 tatggaattt actcccatgt aaaagttacc ccacaaagaa taagacaaga taatagctct
      961 tataatacct ataaatttac aggattgcct aaagaagcgg tttgtaatgt ttctttagct
     1021 gctattcgtg cagctatttt tcctttaaag acagattatt tatattttgt gcgtgataaa
     1081 aatactggag ttcatatttt tagcacaaat atagatgatc acaataaagc cataaattta
     1141 caaaaaggaa aataattttg atatttttat acaaaatagt taaattggaa cagtatttgc
     1201 ttgttaatat taaaaattat aaaaaggata aaaaatgatt aacccattta aatcaaaaga
     1261 actggtcact ggtgctttag cgggtagaaa tctaagaaat caactcatca atgccaatct
     1321 tgcaaatgtt gatactcctt tttataaagc aagagatatt gaatttgaaa cagctttggt
     1381 aaatcgtgca aatgaaattt tcaaaaaaaa tgataataaa gaattgcaat tagccgtaac
     1441 tgaagaaggg catcaaaaac cttggaaatt ccctgatcct agtaaatcta ctatttactt
     1501 aagagatggt catttagcaa gaaatgatgc aaatactgtt gatctagatg tagaaaccac
     1561 agaaatgagt aaaaatacag ttatgataac agctcttgat ggagttttaa gaagacaaag
     1621 caatatcttt agttctatac ttgatgcaag ctctaaatta agttaaaggt aaattatggc
     1681 atacttaagt gattttgata ttagtggtta tggtttaagt gctcaacgtt tcagaatgaa
     1741 tgttattagc tctaatatag ctaatgcaaa cactacaaga acagctgaag gtgggcctta
     1801 tagaagacgc gaagtgatct ttaaagcaac agattttgat aagcttttaa atgagcaaat
     1861 taacaaagat aataattttt taaaatatga aaatccttta aatgatccaa gttcgccaga
     1921 agaagctaaa cctgctattc aaagtgttgt agtggataaa gtggtcagag atgacaaaga
     1981 ttttcgtatg aagtatgatc caagccatcc tgatgcaaat gctgaaggtt atgtagcgta
     2041 tccaaatgta aaccctgtca ttgaaatggc agatttgatt gaagctacaa gagcttatca
     2101 agccaatgta agcgctttta caagtgcaaa aactatagct caaagtgcga ttgatttatt
     2161 aagaggataa taaaaaatga acaatattaa tgatttaaga ttaaataata atatttcaaa
     2221 taccaacaaa agtcaaaatt ccacaggaat tggtgatgaa tttgccaaga tgcttaaaaa
     2281 tgaaatcgat gatttaaaca aagcacaaga aagtggagaa gctgcaatga cagacattgc
     2341 cacaggacaa gtaaaagatt tacatcaagc agctatagct atcactaaag ctgaaagcag
     2401 tatgaaattt atgctagaag taagaaataa agcgatcagt gcttataaag aaatcacaag
     2461 aactcaaatt taaaccctaa tgcaagaata taaaaaaaat agggtttcaa aagttgcctt
     2521 tgcctactgc atggcacttt tgtttatgat tatttttatc agctctactt tttttcttac
     2581 atcaaaacgt catataccta acactgaaaa agatcaatac gctcttgctc taagaggatc
     2641 gattataacc aaagataatt ttactatcac aagttctaaa caaatttatc gcgctgaaat
     2701 tgatcttaga agcattaaca aagataaatt tgatctattt ttaaagcttt ttcaaattta
     2761 tagtggaata agtaacgatc aagtagcaga tattaaaaaa agaatgcaaa atcaaaaaaa
     2821 acgctcttat aattttgttc ttttgcaaaa cttagattcc aagcaagcaa gctatcttaa
     2881 agaccttgct aaaaaacttt atatacaagg ttttttcaaa gcttttacaa acaactctgg
     2941 aagagttgaa acaagaggat taaatatcat cgaacatgaa gaagatagaa tttacatgtc
     3001 aaaagattct tttactccta ttatcggtta taccaaaatg atattagatc cagaaagtgg
     3061 aattttaaaa aatataggag ttaaaggttt agaaaaatac tacgatgaat gtctaagccc
     3121 tgttcaaaat gaaaaaattc aaggacttaa agatataggt ggaaatatta ttttaaatct
     3181 aaattcacta caacaaaaaa agatcaatgg ttgtgattta tatttaaatc tttctttaaa
     3241 actgcaaaaa agtatagaga aagctataga tcaaagaaat gaggatttaa aagccaatga
     3301 aatcatagtt ggagtaatgg aaagcaaaac aggaagaatt ttagctctag caagctcaag
     3361 gcgctatgat ccgcaaaatc gtggaaaaga tctatcagtt cttaatgcaa gcgctataga
     3421 atacggttat gaagcaggtt ctgttatcaa accttttatc tttacaacag ccttaagact
     3481 tggtaaaata aaaatggatg aagtgattaa tacttatggc ggttcttaca agctaggacg
     3541 ttttaccatc aaagacgatc acaaaatgga caaaatgact atggaggaag ttataagata
     3601 ttcttcaaat ataggcatga tacaaattgc caaaagactt aacaatatag aaatcgtatc
     3661 aggacttaaa atatttaaat ttggcgaaaa aagtggtatt gatctaccct atgaacaaaa
     3721 aggagaaatt ccaaatccta agcgcttaag agatatagaa aaatctgttt taagttatgg
     3781 ttatggactt aaaacaacct ttatacaact ccttgcagct tataatgttt tcaacaatga
     3841 tgggttttat atcacaccac gtttagctga aaaattctat caaaatggac gctttacaaa
     3901 tcttgatgat gatgtaaaaa aagaaaaaat tctttctagc gaagccgcta aaacgatgca
     3961 aaatgttctt ataaatgtta tagaaaaagg aacaggaaaa aaggcaatta cacaaggtat
     4021 tattgcagga ggtaaaacag gaacggcaag aatagccgaa agacaaggtt atacctcaaa
     4081 tcgctacaat gcatcctttt ttggttttgc aaatgattta aatcacgcct ataccatagg
     4141 agttctcgta agacatccta ctaaacctta tagttattat gctgcacaaa gtgctttgcc
     4201 tatgtttaaa gatgttgttg atattttaat caatgaagaa tttctaacgc ctatacaaga
     4261 caataaccaa actagcacaa acaactagtt tgatatatct ttagaaaata tcacctcaac
     4321 agcacctata agttcttcag caatcttagc agcaaaagtt gtatcattaa gtattgaaat
     4381 tccttcagct gttgtgattt ttcttactga aataagatgt tcaacattgc ccaaggttaa
     4441 agtatcaatt tcttttaaaa tttcttttcc tttttgaaga tttttaataa tcaaataaag
     4501 cttttcacga tcttcaacca ctctaagctc ttcgatactt cttaaaagct ctcctaaatt
     4561 cgatctaatt ttattgtact ctaaagccaa aaattcatta gaagaactag aatatttctt
     4621 aatatttgct tggataattt ttaaattttt agttgtttcg gctaaatttt tagctgccat
     4681 cttaaaggta aaaattttat gattctttgt ttcatcgtta atataaactt gtgctttagt
     4741 tgaaaaatcg ataatagctt caaaaagaac ctttatccta gtttgataca aatagtccaa
     4801 atccacattt ttactaaacc actttttatt ttctaaaatt tctttaaaac ttttatcact
     4861 ttgtatatct ttacgactaa aacctatagc atgagcaaca attgcatagg tattgttata
     4921 aagatgctcg ctttctttcc ttaaagcttt gatggctgtg tcactaaact taaccaaact
     4981 actatcaaga tataaaggct tgtctttatt cttatcttta ggagctttta ctatcttatt
     5041 taaaaaaaga acaatttgag gagtaaagaa tgaaaaaagc acaacaccaa ttaaattaaa
     5101 caaagtgtga aataatgcta ctttcaaagc tatatcttct atgtttaata caatggataa
     5161 aaaattaaga aaatgtataa aataaggaaa aataagcact attaaaaaag ctataccaaa
     5221 attaaaaata caatttgcaa acgctaattt ctttccttca atattggtac ttaaagaagc
     5281 taaaacagcc gttacaactc ctccaacact agtacctaaa gttgctgcta aggaattttc
     5341 caaactgatt tgtcctgcaa gtaaagcagc gacaataata gccattgtag ctgtgcttga
     5401 ttgtataact cctgtaagca aagcacctaa tcctaaaaaa acaaaaactc ctttaaaccc
     5461 agcaaaatca aaacgagaaa gatcaattat atgtttaaaa ttttcaaaac cacttttaat
     5521 ataatccaca cccaaaaaga aaaatcctat accaataaaa atattaccta aaccttttaa
     5581 aacactatct ttttgaaaga aaaataatac tccaataatc aaaagtggga tagctagcat
     5641 tgaaatttta atatttgtca aaccaacaat cagccaagaa cttgccgtat ttcctaaatt
     5701 tgctccaaaa ataatcccta tgcccgcacc caaagaaata agccctgcgc tcaaaaaaga
     5761 aatcgtaata atagaaacta aagttgaaga ttgcataatt aaagtactta aagtaccaaa
     5821 aagtatactt tttatctttg tatcggttga cttcgctaaa attttttcaa gcaaaccacc
     5881 actaaaagct ttaaaaccta tacctaaatt agtcattcca ataagaagta ttgccactcc
     5941 tgctaaaaga ttggcaagct cgtcataacg aattaaaata aaaatcagaa ctaaagtaaa
     6001 aatactccat gaaataaatt taaaatattt taaagaattt ctttcctctt gcaatgccta
     6061 accttttagt ttttcaaatt cattcatcag aaattctctt aaattttcgg cttcttcttc
     6121 gcctttttct agatactcaa gcaataaatt ttctaattcc tttaaaaaag aaaaaagttc
     6181 attttgccag atactatcgt ttttattgct taaattcatg gtttgtatga aagtcaactc
     6241 tctgcttaaa tccccaagtt tttctaaaaa ttcatctttt tgatcagaat tttttaatgc
     6301 taaattagca ttttggacat tttctttaaa ttctctgatt ttttcatcga ttaaatcgca
     6361 aaatttcgga taaatatcca ttttaatagg ctctaaaagg gtttgctcat ctatatttaa
     6421 agtaagcttt ttaacagcaa aataaagagc taaaaaagac aaagctgcta tgagtaaata
     6481 aattcctagc attaataacc cttaagagct agcattccgc catctaaatt gatactttca
     6541 agtcccaatc tttcagctat aaattcagct gcaaccatgc ttctatggcc actacgacaa
     6601 ataaaagcaa gttttttact ttcatctctt ttgctttgaa attcatctaa aaatttagca
     6661 tttaaaagcc cttgattatc atataaagcc acacattgcg cattaggtaa aataccttct
     6721 tcccattcta aaggagtacg cacatcaaaa atttgatatg cgtttaaatc ttgctttgtc
     6781 caaagacttg cagggatatt ttctatcatg aaaaagcctt attgataatt tttgtaaggc
     6841 ttgcattaaa ttcagcagga ttatccactc ccataccttc gcttagtttt gccatattta
     6901 aaactagggt tgctatatct gcactaaaac tttcgttgtt tttaagacct gtaaaaatag
     6961 cgtgttttgg attgatttct aaaataggtt tgaaattttg ctcttgaccc atttgtttta
     7021 agagttgttg catagcaaaa tcaggtttat ttttatcata aactatacaa cttgggctat
     7081 ctttcaaacg actggttaat cttacatctt caacttgatc ttttagaagt tctttaaatt
     7141 tagctacaag tggagcaaaa gtattttttt cttcatcact tagttcattt ttatcttcta
     7201 cttgattaat ggctacaaat ttcaaacctt caaattctag cataggagtt actaaagaat
     7261 caatctcatc atccatgagt aaaacttcta tatttttttg tttatactct tcaagcaaag
     7321 gagaggttct taataaactt tcattatttc ctgctatata aaaaatttcc ttttgttcgc
     7381 cttgaaggtc atttttatac tcctctaaag agcgtaaatt ttcaccttta gtgcttttat
     7441 aaagcataag ttttaaaaga ctatcttttt ctccgccaaa accataaagt ccttctttta
     7501 ataccttacc aaaggtttta aagaaagata agtatttttc tttatcattg tttttgagtt
     7561 tttcaagttc gcctaaaatc tttttaacgc tagcttcttt aacgcctttt aaaatttgat
     7621 tttcttgtaa aatttcacga cttacattaa gtggtaaatc ttctacatcg ataatcccac
     7681 gcacaaaacg caaataagtt ggtaaaagtt ctttatcgtc atcgctgata aatacgcgtt
     7741 ttacataaag ttttaagccg ctttgataat ccacacggaa taaatcaaaa ggtgcatttt
     7801 gtggtatgaa aaataaagaa ttgtattcta attttccttc acttttagtg tgaagataaa
     7861 gtaaaggttt gtttgaatca tgaaaatttt gctcataaaa tctttcataa tcttctactt
     7921 taaggcttga tttttgcatt ctccataaag cgttggcttt attgatttga gaaattttaa
     7981 gttcagtttt tccttcttct tcgccttctt tagcaggagt aaattcttct ttttccatga
     8041 aaattggaaa ttgaatatga ttagaatatt tttctataat gctttcgatt ttataagtat
     8101 tagcaaactc atcatctttt aagtataaag taatgcttgt gccttgttct tctttgtttg
     8161 cgtcattaat ctcataacca tttgcatcag aactccaaag ataagcttta tcatctaaag
     8221 cttttttact taaaacttcg attttactag ccaccataaa agcagaataa aaacctactc
     8281 caaattgtcc tatgagttga gaatcttttt tagcatcacc acttaaattt tctaaaaaac
     8341 ttttagtacc gctttttgct atggttccaa ggttgttaat aagatcatct ttatccatac
     8401 ctataccatt atcactaatg cttaaagttt ttttatcttt gtcaattttg atttcaattt
     8461 taggttcaaa ttttaagctt ttatatttat catcacttac gctcaaaaaa ttaagtttgt
     8521 ctaaagcatc gcttgcattt gaaataagct ctcttaaaaa aatttcttta ttagaatata
     8581 aagaatgtat cataagctgt aaaagctgat tgacttcggt ttgaaattgc attttaattt
     8641 cctttgtaat tttttaaagt ggtattttag caaaaaatac aaattctaaa gtaaatttaa
     8701 agatttattt gaaaattata aagccaagcc atgcggcaaa taagcaaaga aagacattta
     8761 agataatatt taacgcaaaa tgaagataat ttccactttg caaaagaagt aaattttgat
     8821 aagaaaaagt agaaaaagtt gtaaaagctc ctaaaaaacc tgtacttata aagcttttaa
     8881 gtaaaggaga taaaccttta ttttgtgcat aagaaaacaa aagtcctatg ataaaagaac
     8941 ccaaaacatt aacaaaaaga gttccaaggc tgatagaata aggaaaaaat ttattcacta
     9001 aatttataga aaacattctt aagattgctc ctataaatcc cccaaaacca acaactaaaa
     9061 gggtatttag caaagcttag ctctttcttg atcgagtaat tcttgcattt tttttctagt
     9121 gttttcaagc catttgtcat catttgtatc gactaaatcc atacaaatga ttttaagcac
     9181 tccgctgctt gcactaaaac tttttgtgtc taaaattttt acagaatcta caattaaaat
     9241 aggttgaact ttaagattta atttttcact taaaattttt gctccacttt gaaatttaag
     9301 cattttttca tttttagatc tagttccttc tggaaaaata gccaaaaccc tatcttcact
     9361 aattctttct tttgcttctt ttaaaactcg tactaaatca cgcggatttt ttctatctat
     9421 acaaagaagt tttggttttt tcatggcgac tttgaaaata ggaatttctc ctaattcttt
     9481 tttggcaatc cagcataaat ttttaggata taattcttct aaagcgatga tatctaaagc
     9541 actttggtga ttcattaaaa tcatctgagc ttgtggatta aaagtaccaa tgatttcttg
     9601 tttataagag atagtatatc tttgaaattt agcccaaatt ttgcggattt tccaaagtgt
     9661 gttttgagat tttgtaaagc aaaaacaaaa aactaccaaa gcaacgctta aaacaaaaaa
     9721 aatccaaaaa taaagagctt taattttttt gtaaatcatc tttattaacc caacctattt
     9781 ttccatcaga aaacagtact ttaatataat tttgtcgttt gcctaaaact tctacttttt
     9841 catctgcatt tgccgtataa aaataagttg aaggctctgt aggtaaaatt ttagccctag
     9901 aaccagcctt gataattgca ttttgagtat tggtatctac aagaaaacta agtgcaaaac
     9961 aaacaactgc caaagccaga ataatgtaat tttttctcca tacaaataaa gctccaaata
    10021 aaaccgctaa aaaccataag gtatattgtt tataaatatt taagtcttta tttacaggat
    10081 ttaaatcact ctgagtgctg atctcatcgt cactaatttt tagttttaaa tttatatttt
    10141 caagcttttt actgtcctta ttgaaatacg aaaattcaaa atttgtttta cttaatggca
    10201 aaatagcata ataaaaagca ctagaagcat taaaatcccc ttttaaattt tcaatacctt
    10261 gcttttgaat tccttctata aaaaagcttt taagatttgt attggttgcg tttagttcta
    10321 ccatcataat gatattagca tcatcaaaat aactcgcttt aactttttta atttccaaag
    10381 aacttgccac aaggtgtgaa aaatctttat tggataaagt attttcaaat ttgataggat
    10441 taagattgat atcggcctct tgaaaagctt cattatttct aagaagtttg atagaaattt
    10501 tactcaaact agcatttgaa tttttggctt caaaccataa agttgtttta tattcgttat
    10561 tgataaattc ccattttgca tctggattta aaaaagataa attagttttt tctacgctta
    10621 tgttaaaatc aaattttgta ttttccgtag tgcgagcata gatcgtaata ggaaaaactt
    10681 ctccaacata taccctgctt ggatattcat catttgtaag aaccaaactc cctttagcta
    10741 caaaaggatc atctacattg ctttcaaagt cattgttttc atcacttggc ggaatatttt
    10801 gataaatttt ttgttcttct tggggtaatt tttgtaattc tttttgcata ttttcatctt
    10861 ggccgccaaa tacagaaatt tcacccctgc caaacaatac aacaacacta aaaattaaag
    10921 ttaataaaat tttcaaaata aaaagccttt aagcattttc aaacctatat cattacctag
    10981 gactttttca caagcacgct caggatgtgg catgagtcca aagatttttt tgttttcatc
    11041 acaaattcct gcgatatcaa atacagaacc atttggattt ggctcgtatt ttaaagtaat
    11101 aagatcttta tcttgcaatt cttttaaagt agcctcatca gcgtaataat ttccctctcc
    11161 atgagcaatt ggtaaattaa taatttcatc ttttttgaaa tttttcaaaa aggcattatc
    11221 attagaaact actcttaaat tttggttttt tgagataaaa ctaagattgt tgttatgctt
    11281 cattgcacct tttaaaagac cgctttcaag taaaatttga aaaccattgc aaatacctaa
    11341 gatatatcct cccttttttg catgattaaa aacaccttgc atagcaggag caagttttgc
    11401 aatagctgca catcttagat aatctccata agaaaatccg cctggcaaaa caactaaatc
    11461 tgtatcaaat tctttttctt catgccaaac aatctgcgtt tttactccaa gtttttcaaa
    11521 ggcataagct gtatcaaatt cacaatttgt ccctggaaat ctaataatag caactttcat
    11581 tttactcttt ctcaattaca agctcataat cttcaatgat gctatttacc aacaactctt
    11641 cacacatttt ttttacttgt tctttggcta atttttcatc tttctcatca agagaaattt
    11701 tgatttgttt tgctattttt acttctttaa cactattaaa atttaaagaa tgcaaagctt
    11761 tttccaccgc tttgccttgt ggatctaaaa ccccattttt taaagaaata tttacaataa
    11821 cttccatatt tttccttaat ttaatattct ttttaaaact tcttcataag ccatttttac
    11881 attacctaga tcttgacgaa atctatcttt atctaatttt tcattgctaa atttatccca
    11941 aaatctacaa ctatcagggc ttatttcatc agctaaaaca agttcattat ctttagttaa
    12001 acctagttcg attttaaagt caatcagcct taaattttta ttgtcaaaaa atggagttaa
    12061 aatagagtta atctttctag ccatattttt aatttcacta atttgagctt cattttgcac
    12121 taaatttaaa atcaaacaat gctcatcatt gataaaagga tcgcctaaag catcatcttt
    12181 aagacaaaat tccaccaaag caaaaggtag cacagtgcca tctttaatgc ccagtctttt
    12241 tgtaagagaa cctgttgcaa cattgcgtac tataacttca ataggaacaa ttttacattt
    12301 tttaaccact tgttctgtat cgcttatagt ttctaccaaa tgggttttaa tcccattttt
    12361 ttcgagcaaa tgaaaaattt cagtactgat tttacagttt aatgcgcctt ttccactttc
    12421 attgcctctt ttttctgcat taaaagcagt taaatcatct ttaaactcac taattagtaa
    12481 attttcatca tcagttttga aaagtttttt accttttcct tcgtagagca tttctttttt
    12541 tgtcatttta ttgtccttgt ttgatattta aaattttaat agtatcaata gctgatttta
    12601 actgtgcgtc atcattgatt tgtttttgac tgattagatt tttattgtct ttattttctt
    12661 gtttatcttc ttttttattt ttatctattt tttcaagctc actttctaaa tgttgtttta
    12721 agtcgctttc ttttatagaa aaaccatctt cttgagtatt tactttacct ggaaaaactt
    12781 caatatcagg ttttacaccc actgcttgaa tagtacgccc gcttggaaga taatatcttg
    12841 caatagtaag ccttaaagct tcagttttat taataggtat gatttgctga acactacctt
    12901 ttccaaaagt attttcaccc acaataacac cgcgtttaag atcttgtaaa gctccactta
    12961 caatttcact tgcactagca cttccaccat ttacaagcac aaccaaagaa gcattagaaa
    13021 ttttgttttt aggatcggct ttatattctt gattttcact tgcgatgcgt cctttttgag
    13081 aaacaataac acctttatct acaaataaat ttacaagtcc tatggcttga tttaaaagtc
    13141 caccaggatt atttctaaga tctaaaataa ctcctttaac attaggatat tttttaagtt
    13201 ctttacttgc cacatctaca acatttttat caaaatttgt aaccctaaga taaagaatgt
    13261 tttcattttc tatcattttt gcataaacac tttctatctt aataatttct cttgtaagtg
    13321 taacatcaaa aggttttgtt gcaccttttc taaaaatggt taaagtgatt tgagtttttg
    13381 gcttaccacg cattttatct acagcatcat tgagattaat tcctaaagtg gcctcatcat
    13441 taatttttaa aataatatct cctgatttta tccctgcttt atctgctggt gttccttcta
    13501 taggagaaac aactgttaaa gcgccatctt tcatacctac ggttatacca aggccaccaa
    13561 attcgccatt ggtttgaatt ttcatatcat taaaatcttt ttcatttaaa aaagaagaat
    13621 gcgcatcaag attgcttaaa agtcctgata aagatttatc caccaaatcg ctgatatttt
    13681 gatcatccac atagtattgc tctactatgg caagagtttt tgtaagctta tctaaagctt
    13741 ctaggcgttt ttgaacctgc tcttcttttt gatcaacttt agcttgtaaa tgacttgtta
    13801 aaaatagaca taaaataaaa gtagtggcaa agcctgcaag acccgcaaaa aatcgttttg
    13861 ttttcaaaat aagctccatc attgagtttt agtttaaaga gtaaatttta ataaaaattg
    13921 cttaaaactt cgtaaataaa tttaaattct taaaaatatg ttaaaataga ctaaaaattc
    13981 caaaaagaaa gttaatacaa tgtgccaaga aaaacatact catacacatt ctcaaaaaca
    14041 tcttaaagca gtttgcaatc gtctaagtag aaccataggg catttaagcg ctattaaaag
    14101 aatggttgaa aatgacaaag actgtagtga aattttaatc cagcttgctg ccgtaaaagc
    14161 cgaagttaac aatactgcaa aagtagtttt aaaagaacat ttagctcatt gtatggtaca
    14221 tgctgtagaa gaaaatgata ttcaaagtat agaagaatta aacaaggcta tagatatgtt
    14281 tatgaaataa tctaaaatta gtcatttgtc ctattattta aaaaatttta ctcaattaac
    14341 ttgacattat atgactaaag ttatataata gcaagtatat aaactaaata aaggataaaa
    14401 catggcaaat atacaaaatt ttctaactga taatatgctt tcaaaccttg aaagcgcagc
    14461 atctttagct atacattcta aaaataatga agttgcacct ttacatcttt tatgggcttt
    14521 aagcgtagat agtacaagta ttttaaatca aattttaaat aaattaaata tttccaaaga
    14581 agccttagaa cttgaaatta aaagcagaat ttcaaaactt gcaacgagtt caaatgtaaa
    14641 ccgtgaaaat atacgctttt ccaatgaact tataaattca ttagaaaatg ctaaaggatt
    14701 aatgagtgct aatggagata gttatttaag tgtggatact tggcttgtaa gtgaaagtca
    14761 aaaaagtcct actaaagaaa ttttggcgca atttttagat ttaagagaat ttcaaaaaga
    14821 gcttgaaagt ctaagagcgg gacgcaaaat cgatagcaaa acaagcgatg aaaccttaga
    14881 cagcttaaat aaatttggta tagatttaac cttaaaagca agcgaaggta aacttgatcc
    14941 tgttataggc agagaagaag aaatcgaacg tttaatgcaa attttaatac gcaaaaccaa
    15001 aaataaccct atacttttag gtgaaccagg cgtaggaaaa acagctatag tggaagcttt
    15061 agcacaaaga attattaaaa aagatgttcc aaaatctttg caaaataaaa aagttatcgc
    15121 tcttgacatg agtgctttaa ttgcaggtgc aaaatacaga ggagaatttg aagacagatt
    15181 aaaagctgtc gttaatgaag tgataaaaag tgaaaatatc attcttttta tcgatgaaat
    15241 tcacactata gtaggagctg gagcgagtga aggcagtatg gatgcggcaa atattttaaa
    15301 acctgctctt gcaagaggtg aactccatac tataggcgca actactttaa aagaatatcg
    15361 taaatatttt gaaaaagatg cagccttgca acgccgtttt caacctgtaa atgtaggtga
    15421 gccaagcgtt aatgaggctt tggctatgtt aaggggtata aaagaaaagc ttgaaattca
    15481 tcataatgta actataaatg atagcgcttt agtagctgca gctaaacttt caaagcgtta
    15541 tatagcggat cgttttttac ctgataaggc cattgattta atcgatgaag ctgcagctga
    15601 actgaaaatg caaattgaaa gcgaaccaag ttctttaaga aaagtacgca aagatataga
    15661 aactttagaa gttgaaaatg aagctttaaa aatggaaaat gacgagaaaa atcaaaaaag
    15721 acttgatgaa atcgcaaaag aactagccaa tttaaaagaa aaacaaaatg ccttaaattc
    15781 acagtttgaa aatgaaaaaa gtgtttttga tggcataagt gctaagaaaa aagaaattga
    15841 tctgcttaaa aatgaagctt ctttggctaa agctagaggt gaatttcaaa aagcagccga
    15901 gctagagtat ggaaaaattc caagtcttga aaaagaagta gaaattttag aagataaatg
    15961 gaaaaaaatg agtgaaaatg gagttttact taaaaatcaa gtggatgagg atttggttgc
    16021 tggaatttta agcaaatgga cgggtattag cgtgcaaaaa atgttaactt ctgaaaaaca
    16081 aaaattctta gaagtggaaa aacatttaaa agaaagtgtc ataggacaag ataaggcctt
    16141 aagtgcttta gctagagcca ttaaacgcaa caaagcagga cttaatgcgg acaataaacc
    16201 tataggaagc tttttatttt tagggccaac aggggtagga aaaacacaat cagctaaagc
    16261 tttggcaaaa tttttatttg acgatgaaaa agcaatgatt cgctttgata tgagtgaatt
    16321 tatggaaaaa catagtgttt caagactctt aggcgcacct ccagggtaca taggacatga
    16381 agaaggtgga gagcttactg aagctgtgcg aagaaaacct tatagcgtgc ttttgtttga
    16441 tgaagttgaa aaagcacata aagatgtatt taatgtgctt ttagggattt tagatgatgg
    16501 tagagcaacc gatagcaaag gtgtaacagt ggattttaaa aataccatta tcattttaac
    16561 ttctaatatt gcctcaagcg ctattatgaa tttaagcgga aaagaacaag aagatgtggt
    16621 aaaaaatgag ttaaaaaatt tctttaaacc tgagttttta aaccgcttag atgatattat
    16681 cacctttaat ccacttggaa aagatgaagc ttatgaaata gttaagcttt tatttaaaga
    16741 tttacaaatg agcttagaaa acaaggggat aaaagcgagt ttaagcgaaa atgcagccct
    16801 tttaatcgct aaagatggtt ttgatcctga ttttggtgct agacctttaa gaagagctat
    16861 ttatgatctt atagaagata aattaagcga tatgatactt gctgatgaac ttcatgaaaa
    16921 tgatagcatt atcattgatg caaaagatga tgaaataatc atcaaaaaag cttaatcatt
    16981 ttgaaagtag atctttctac tttcaaaata taatctcgct ttcattaaat ttcatatttg
    17041 cttttggcaa tggtgatttg gtggtataat aagcactttc tcctttataa tttccacgat
    17101 aaaccccatt aggaatgcta aattttctag ttgtatcagg gaatttttct atatattgag
    17161 ttaaaaattc tctaaacaca ggagcagctg ttctagcccc accttctgta taacgcatag
    17221 gcttgttgtt atcatttcca taccaaatga ttgcttctat ttcaggcgta agtccacaaa
    17281 accaagcatc aacactttta ttcgttgttc ctgtttttcc tgctatttct atatctttta
    17341 ctcttgcatt gcgtcctgtg cctttttcaa caacatttct catcatatct aaaaccagaa
    17401 aactttgcgc ttcatcgctg actttacgct catttgagtt aaattccatg atggttttac
    17461 cggttttatc ctgaacttgt ctgataattt gaggatcttt aatcgtacca tagttcccaa
    17521 acatggtata aaatttcgaa tactccaaag gagaaatacc aaaacttccc aatacgattg
    17581 ataaattagg cggtatatct ttaaatccaa attccattag tttagagtaa agaacatcaa
    17641 gccccatatc aagtgcgaga ttaatggtag ctaaatttct tgatcttgtt aaagcttctt
    17701 ttaaggtaat taaacctaaa aatttacccc cttcattttt aggtttccaa tcctcattat
    17761 tacccgctcc accttcaaaa attctagaaa tatcagcaat ttcactcata ggcgaatatc
    17821 ctaaattaat cgccacttga tacacaaaag gtttaaaaga gcttccaggt tgacgcatac
    17881 tttgagtagc acggttataa ttactttttt cataatcaac cccacctacc aaagctaaaa
    17941 catcgccact ttgatgattt accacgacca tagctccgtt taaagtgctt aaatttgcat
    18001 ctttatcgcg ttttactatc tcatcataac caaatttcaa agcattctgc gccatatttt
    18061 gaacatctaa gtctatattt aaaatgattt tatatccacc tgtttttaag tctttgatat
    18121 tagggcttaa ttgtttaatc acttcatcta cgacataagg agcagcattt tgagtaagcg
    18181 tatcatcata aacttgcgga atttctttaa tggctgtatc ataatctgct tttgaaatcc
    18241 aacctagatt atacattctt gaaataacat tatttgctct tgagatggaa agatctaaat
    18301 gctttgtagg atcataactg ctaggtgctt ttggcatacc tactaacata gcaatctctt
    18361 taaggcttaa ttcatttaaa tttttatgaa aataccccaa agatgcggtt tttactccat
    18421 aatacccatg tccaaaaaag ataaaattta aatacctttc taaaatttgc tctttagtta
    18481 aaatggtttc cattttataa gcaagcaaag cttcgcgaat tttacgcgta atcgttcttt
    18541 ctggggttaa ttctgtgttt ttaataaatt gctgggtaag agtggaagct ccttccatgg
    18601 tttttccacc gctttttatg atttttacag cagctctaaa aatggcatcg atattaactc
    18661 cattatgttc aaaaaagctt gtatcttcta tagcaactaa agcttctata aggcgtggag
    18721 gaagctcttc ataaggagcg taaaaacgat gctgttcaaa aatattagcc acaagcttgc
    18781 catttctatc gtaaatttgt gttgtaagag gaggtttgta ttctttaaaa gtataaccct
    18841 cagtatcagc acttgtgaaa agataagcca cataaataaa tccagctata aacaaaagag
    18901 taaaaaatga aaaaatatat tttaatattt tcataaataa gcctttaaag tttggatatc
    18961 aagccctaaa gcagtgctta gatttcctac ttggtgggtg atgaaatttt gatgaaaacc
    19021 ctcacacata atacaacccg ccttgccttt ataaagatca ttttctacat aatctcttaa
    19081 agcattttca tcaaaatttt taaaataaag cgtagttttt gaaagagaaa aaactctttt
    19141 ttcaggtttt acaagcaaaa aagccgataa aatacttgca tacttgccat tttgcaaggc
    19201 aagcatttca taagcttctt ttttatcctt tgctttggta agaatttttt catctataca
    19261 aactatacta tctgcaaaaa gcaaattttg gttttgaaaa tctttgccta aagtacttaa
    19321 aaattgtctt tctttttcaa gaactatttt ttgaacatat aaaaaaggtg aaatattctt
    19381 atctaaattt tcatcataat caaaactaac ttgcctaaaa tcaatctttg cggttttaag
    19441 caagttagct cttgaaatgg aacttgaagc aagaattaac attaaagtgc tttttctatc
    19501 gtttctaagc tttgttttaa agcttcattg attttgctta aatcttttcc acctgcagta
    19561 gcaaaatcat ctcttccgcc accatttcca cctaaaattt gtgccgcttc tttaaccaaa
    19621 gctcctgctt ttaaaggcac atctttaaca ccagctgcta aagtgatttt ttcatctttt
    19681 acttggataa gtaaaatcac cgctttagca aatttgtttt taaaatcatc aatcatagct
    19741 ttaatatcgc cattatctat acgttttacg caaatttcaa caccttggat atttttagaa
    19801 tcaagctcgg ttttacttga atttttaagc tcatttttta aacttaaaat ttcattttta
    19861 agctttttaa tcccgcttaa aatatcatta tttttaagtt catcttttac tttagaaagt
    19921 tcttcaagtt gattttttac aaattctaaa gccgctttag aaaccacagc ttcaatgcgt
    19981 ctaactccag cactcacacc gctttcttta actatgtaaa aacttcctat ttgagcagta
    20041 tttttaacat gagttccccc gcaaagttcc ttgctttcac ctagagttaa aacacgcaca
    20101 ttgccttggt atttttcatt aaacaatgct atagcgccgc tttttttagc ttcttctaaa
    20161 ggcatatttt ctaagatagc ttcgcttgag tttataatca tttcattgac tcttttttca
    20221 atgttttcta gctcttcttt gcttaaagct ttatgatgag taaaatcaaa tcttagttta
    20281 ttgctttcaa ccaaagatcc tgcttgactt acatgagaac ctaaaatttc tcttaaagca
    20341 tggtgtaaaa gatgagtggc tgagtggtgg cgtgcgattt gctctctttt ttctgtatcg
    20401 attcttgcat gaactatatc gccaactttt agttcttcgc ctgcttttac aaagctaaga
    20461 ttgagattaa aaaacttttg cgtatctaaa acttcacgct tggccataaa tccactatca
    20521 gcactttgcc ccccacttgt tgcataaaaa ggtgtgtttt taagcatcac ccaacccgca
    20581 tctttaaggg tggaaacttc tttaaaatct tcatctaaaa gggctaaaat tttactttcg
    20641 cattctgctt tttcataacc tacgaaatga ttttctccaa atttttcaag caagttttta
    20701 aaatctccgc ttgcagtttt atctccactt cctttccaag aagccttagc gcgtgctttt
    20761 tgctcattca ttaaaagttc aaatttttct tcatcaactt taagattttt ttctcttagc
    20821 atatcagccg ttaaatcaag cggaaaacca taagtatcat aaagtttaaa ggctacttct
    20881 ccgctaaaaa tttctttagt gtttttaagc tcttcattaa aaatttcaat cccattttct
    20941 atagtgctta aaaatctttc ttcttcaagg cgaatttgtt cttttataaa gtcttttttc
    21001 tcattaagat aggtataatg tccgcccatt aaatcgcata caacatcaac tagtttatac
    21061 ataaaagctt gtttaaaacc taacaaatat ccatgtctta aagcacgacg caaaatacga
    21121 cgcaaaacat aacctctacc ttctttatca aaacttaccc cttgtgcaag caaaaataca
    21181 cttgatctta tatgatcagc tatgactcta aaacttgctc cgctttcata aatataagtt
    21241 ttattacaaa gttttgaaat ttcattgatg attggcataa aaagcgagct atcaaaattg
    21301 ctgaatttac cttctttaat cgctgttact ctttcaagtc ccattcccgt atcaatgctt
    21361 ggctttggta gtgggctaag cactccatca gcacttcttt catattgcat aaaaacaaga
    21421 ttccagattt ctaaaaatct atctccatct ccgcccatat aatcttcgct tgagttaaaa
    21481 tgctcttctc cttggtcata aaaaatctca ctacaaggac cacaaggacc agtatcgccc
    21541 atttgccaga agttatcttt atcgccgaat ttgtaaattc tttctttttg aatgtgtttt
    21601 tgccatagat taaaagcttc atcatcgttt tcatgcacgg ttacataaag tctgtcttta
    21661 ggtagtttta aaaattcagt tacaaattcc caagcataag ctatggcttg ttctttaaaa
    21721 taatctccaa aactaaaatt cccaagcatt tcaaaaaaag tatgatggcg tgcggtatat
    21781 cctacattat ctaagtcatt gtgctttccg cccgctctta tacaagtttg acagcttgtt
    21841 ttgcgtggag ggtttgggcg tggaatttct cctgtaaata tacttttaaa aggcaccata
    21901 cccgcattag taaaaagtaa agttgcatca tcaggaacta aaggacttga cggggttatc
    21961 tcatgtcctt ttgatgcaaa aaaatccaaa taagcttttc taatatccat gaattttcct
    22021 aaagaaattt ttataaaaac atatcatacc aaaattactt taaattaagt aaaactaaaa
    22081 tacaataaac atttttattt aattttattt ctctaaggtt ttttatgaat tttatcaatc
    22141 ttcaagccca atatctcgca tacaaagatg aaatcaatgc tgaaattgaa agcgttttat
    22201 caagctcttc ttttataggc ggtgcaaagc ttaacgaatt tgagcaaaat ttagctcatt
    22261 ttttaggtgt taaacacgct ataggttgtt caagtggaac cagtgcttta tatcttgcct
    22321 taagagcctt agatattggc aaagatgatg aagttatagt gcctagtttt actttcatag
    22381 caacagctga agttgtggcc ttagtaggcg caaaacctgt ttttgtagat ataaatttat
    22441 caaattacaa tcttgatttt gaagcagtgc aaaaagcaat aaccccaaaa actaaagctg
    22501 ttatagcagt aagtatgttt ggacaaatga gtgatttaag ggctttagaa gaaattttaa
    22561 aagataaaaa tatcactttg atcgaagatg gtgcacaaag ttttggtgca agtttcaaag
    22621 gagaaaaatc ctgctccata gctaaaattt catgcacgag cttttttcct tcaaaacctt
    22681 tgggagctta tggcgatggt ggggctattt tttgccatga tgatgaaatt gctaaaaaaa
    22741 taagaatttt actcaatcac ggacaaactc agcgttataa acatgaattt ataggtataa
    22801 atggacgcct tgataccttg caagcggcga ttttaaatgt taagttaaaa tacctagaaa
    22861 aagaattaga caaaagacaa aaattagcac aaacttataa tgcaaattta aaaaactgcc
    22921 aaattccgca aattgatcca aatgctttta gcgcttatgc acaatacagc gttttagttg
    22981 aagatagagc tagtgtattg caaaaatttg aaaaagctaa tataccttat gctatacact
    23041 atccaacccc tttgcataaa caaccttgct ttagtgagtt ttcaaattta gaacttaaaa
    23101 attcagaata cgcaagcgaa cacatcttat ctttgccttt ttcacctttt ttaagtgaag
    23161 aagagcaaga gcaagttatt tgtattttta aagattaatt ccatgaaaat aggtatcata
    23221 ggccttggaa aaatggggca aaaccactta aatgaactta gtaaaaattc tcattttaag
    23281 cttaatgcac tttttgatct ttgcaaaaat ccaaatctaa atatttttga tgatattttt
    23341 tatgatgatt tggataaatt tttaaatcaa aataatgata ttatcatcat agcaacacct
    23401 acaaattcac atttagcaat agcaaaaaaa gtttttaaac aatgcaaatg cgttttaatc
    23461 gaaaagcctt tagctctaaa tttaaaagaa atagacgaaa tttcaaattt agctaaagaa
    23521 tacagcgtaa aagtaggcgt aggtttttgt gaaagattta atcctgcggt tttagcccta
    23581 aaaaaagagc ttgaaaatga agaaattatc agcattaaca tacaaagatt ttcaccctac
    23641 ccgcaaagaa tcagcgatgt agggattttg caagatttgg ctgtgcatga tcttgatttg
    23701 ctttgttttt taagcaaaca agaaataaca aaaaccaatt tgcttaaaaa atatacccaa
    23761 gatcaaacaa gagaaagtga aagcattatt ctatgtgagc ttgaaaaatg tattgctagc
    23821 atacatcaaa gttggaatag cacacaaaaa ctaagaaaaa ttcatcttat tactaaaaat
    23881 catttttatg aagccaattt aaatgacttt tctttattaa aagatggaaa ttttatagaa
    23941 cttactcaac aaagtccact tttttcagaa cacgaagctt tgttaaaact tatcgataat
    24001 caagctaatc atttagccag cacgagcgat gcttacaaag ttcaagaaat tttagaaagg
    24061 tttgcgtgaa attagtttta tttttaaata tgggcggagc tacgaattta caagattgtg
    24121 aagttttttt aaaaaatatg tttaatgatc cttatatttt aggaatcaaa aatcgatttt
    24181 taagaaaatt tgtagcatgg atcataacaa aggctcgcgt taaagccatg caagaaaact
    24241 ataaaaaaat gggtggaaaa tcccctttaa acgaacttac tcaaagcctg tgtaataaac
    24301 ttaatttaaa acaagatgaa tttaaatttg attttgtaaa tctttatgtg cctccttttg
    24361 ccacagaaat tttgcaaaaa tacactttaa atgaaagtga tgaaatcatt ctttttccac
    24421 tttatccgca ccattcttgc accacagtaa cttcatcttt agaagttctg caaaatgaaa
    24481 tttcaaagca aaaaattcaa gcaaaagtaa aaactataga tattttttac aaaaatgagc
    24541 tttataatga gatgatagtt tcgcacattt tggctaaaaa aagtaaattt gatgccaaaa
    24601 ttttgatttt ctcagcgcat tctttaccac aaagcattat tgacaaaggt gatttatatg
    24661 aaaagcatgt aaatgatcat gtagaaattt taaaagaaaa actaaaagat cattttgatg
    24721 aatttatttt agcttatcag tctaaactag gccctgtaaa atggcttgaa ccaaatacaa
    24781 gcgatgtttt agcaaattta aacgataaag ctttgattta ccctatttct ttttgcattg
    24841 attgttctga aacgattttt gaactaggta tggagtataa acatttagca aaatgtgatt
    24901 atgatttgat aagttgccct aatgatagtg atgaatttat ggaatttatt ttaaattcta
    24961 taaat
//
LOCUS       DAZAND010000013        23853 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.013, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000013 DAZAND010000000
VERSION     DAZAND010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23853
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.013"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            59..1588
                     /locus_tag="ACHDOB_000404"
     CDS             59..1588
                     /locus_tag="ACHDOB_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HFN3325345.1"
                     /translation="MTKQEIQKLDTNFLGHPKPLFSLSMVELWERFAFYGIRSLLVLF
                     MATTISKGGLGISTEYASAIYGIFAGCLYLAALPGGWITDNYLGQKKALFLGSFIIAL
                     GHISIALSILSTPIFFLGLTFIVIGTGFFKTSASVTVGMLYKQNDTRCDTGYTIFYIG
                     INIGAFIAPLICGFVQAKWNYHLGFGIGGLGMLISLLILYFKATPELEEFHKNCTLKQ
                     NWEQPFKKSKNLTLILSISLLSIIGFFLIFINLADINPIILSKKLLIVILLCLVIYFI
                     YLFVFKTLNKREKQQLTILIVLFFVATFFWSTFEQKPTAYNLFAQDFTNRNIFDWKIP
                     TNWFQSFNPIFIIILAPIASYIWIFLEKKNIYFSSIGKFTLGILFAGIGFMMMTFASQ
                     NLINNNGLPISMVWIIISIFFLTLGELCVSPVGLSIMAKVAPDLIKNQIMGLWFVASA
                     LGNFVAGLIGGNVNIKNIDQLPNIFGQCMWMLFVVALLLFIAKKPIYKILNEKNKQLS
                     N"
     gene            1760..3313
                     /locus_tag="ACHDOB_000405"
     CDS             1760..3313
                     /locus_tag="ACHDOB_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HFN3325346.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKIIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFLAAALFWSVYEQQYTSFNFFAEKLTDKTILNYEIP
                     TIWFQSLGGLFVILFAPFSAFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASN
                     HAISLNGDANTLRENLENSSQIILVSPWWLVSSFLLMVLGELCLSPVGLSIMTKIAPN
                     LIKSQVMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILK
                     KPINKILKN"
     gene            3329..5119
                     /locus_tag="ACHDOB_000406"
     CDS             3329..5119
                     /locus_tag="ACHDOB_000406"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HFN3325347.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDVKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLQINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNVTSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAVKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDAKASEFRAQSKHYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(5240..7048)
                     /gene="mrdA"
                     /locus_tag="ACHDOB_000407"
     CDS             complement(5240..7048)
                     /gene="mrdA"
                     /locus_tag="ACHDOB_000407"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HFN3325348.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTQY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQ
                     GGTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSK
                     PKYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(7049..7543)
                     /locus_tag="ACHDOB_000408"
     CDS             complement(7049..7543)
                     /locus_tag="ACHDOB_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325349.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYAPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(7540..8136)
                     /gene="yihA"
                     /locus_tag="ACHDOB_000409"
     CDS             complement(7540..8136)
                     /gene="yihA"
                     /locus_tag="ACHDOB_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HFN3325350.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVTCKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIIDQTLGLGK"
     gene            complement(8133..8594)
                     /locus_tag="ACHDOB_000410"
     CDS             complement(8133..8594)
                     /locus_tag="ACHDOB_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HFN3325351.1"
                     /translation="MVARQIILLLVCVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(8576..9091)
                     /locus_tag="ACHDOB_000411"
     CDS             complement(8576..9091)
                     /locus_tag="ACHDOB_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325352.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNTSTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGANNVKIISQEVEYEPKNKVLYTNTDFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(9082..9570)
                     /locus_tag="ACHDOB_000412"
     CDS             complement(9082..9570)
                     /locus_tag="ACHDOB_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HFN3325353.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLEEEWNKL
                     WL"
     gene            complement(9576..10403)
                     /locus_tag="ACHDOB_000413"
     CDS             complement(9576..10403)
                     /locus_tag="ACHDOB_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HFN3325354.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(10363..11481)
                     /locus_tag="ACHDOB_000414"
     CDS             complement(10363..11481)
                     /locus_tag="ACHDOB_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HFN3325355.1"
                     /translation="MKKNLLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILSQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(11481..12296)
                     /locus_tag="ACHDOB_000415"
     CDS             complement(11481..12296)
                     /locus_tag="ACHDOB_000415"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HFN3325356.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAVGVHPYEIDNYDEKILRQYLYDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(12287..13531)
                     /gene="cbrR"
                     /locus_tag="ACHDOB_000416"
     CDS             complement(12287..13531)
                     /gene="cbrR"
                     /locus_tag="ACHDOB_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HFN3325357.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVILAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLIQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDHCLSYMDDKKFLSTYNVLDPVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(13635..15158)
                     /gene="recN"
                     /locus_tag="ACHDOB_000417"
     CDS             complement(13635..15158)
                     /gene="recN"
                     /locus_tag="ACHDOB_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RecN"
                     /protein_id="HFN3325358.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIELDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     FNVILEEEKKVEELKELARVQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKT
                     EHIFELEKVVIEALNLSEVDPSFFSECLNELRVICENQKMEDLDFDVETLLDRIENLS
                     YLIKRYESIENALEVLKQKKHELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQAR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIILDINLAHLKNLSSGEL
                     NRLRLAFIATECKILNAGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSYEAIEFAKTLFKN"
     gene            complement(15158..16018)
                     /locus_tag="ACHDOB_000418"
     CDS             complement(15158..16018)
                     /locus_tag="ACHDOB_000418"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HFN3325359.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLF
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCILCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            16109..17860
                     /gene="aspS"
                     /locus_tag="ACHDOB_000419"
     CDS             16109..17860
                     /gene="aspS"
                     /locus_tag="ACHDOB_000419"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HFN3325360.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLIAEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVINVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFAKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKEDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELNLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            17857..18435
                     /gene="adk"
                     /locus_tag="ACHDOB_000420"
     CDS             17857..18435
                     /gene="adk"
                     /locus_tag="ACHDOB_000420"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HFN3325361.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVVNTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERTIEPIVADMKELIKKIQSI"
     gene            18445..18963
                     /gene="ppa"
                     /locus_tag="ACHDOB_000421"
     CDS             18445..18963
                     /gene="ppa"
                     /locus_tag="ACHDOB_000421"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HFN3325362.1"
                     /translation="MDLSKIKIGDIPNKINAVIEIPYGSSIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            19004..19501
                     /gene="msrA"
                     /locus_tag="ACHDOB_000422"
     CDS             19004..19501
                     /gene="msrA"
                     /locus_tag="ACHDOB_000422"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HFN3325363.1"
                     /translation="MKNIVLGGGCFWCVEAVFERLKGVIDTEVGYSGGNPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPNQGYCQAVIAPKLQ
                     KIQSG"
     gene            complement(19677..20516)
                     /locus_tag="ACHDOB_000423"
     CDS             complement(19677..20516)
                     /locus_tag="ACHDOB_000423"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HFN3325364.1"
                     /translation="MQNILSSFTQEKNVCVFANTLKISIEELEKEFLKQKLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(20545..20928)
                     /gene="ruvX"
                     /locus_tag="ACHDOB_000424"
     CDS             complement(20545..20928)
                     /gene="ruvX"
                     /locus_tag="ACHDOB_000424"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HFN3325365.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANARKKDGKLDSLSAFIMIKDYFAL"
     gene            complement(20925..21698)
                     /gene="dprA"
                     /locus_tag="ACHDOB_000425"
     CDS             complement(20925..21698)
                     /gene="dprA"
                     /locus_tag="ACHDOB_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HFN3325366.1"
                     /translation="MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVITLSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            complement(21688..22770)
                     /locus_tag="ACHDOB_000426"
     CDS             complement(21688..22770)
                     /locus_tag="ACHDOB_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HFN3325367.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISSNKDHYEIGIFQENEFDNNKFVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFIPKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPELDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEVLKNQNIFFVDSKTI
                     GNSKANKIAKELNVPYIQRDVFLDNEDDVNYVKKQIQNAVKLAQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKSVDLVYLSEIYGK"
     gene            complement(22774..23796)
                     /gene="ilvC"
                     /locus_tag="ACHDOB_000427"
     CDS             complement(22774..23796)
                     /gene="ilvC"
                     /locus_tag="ACHDOB_000427"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HFN3325368.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     IIGLREGSVSAVKAKNAGFEVMSVSEASKTADVVMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVAPKGIDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
BASE COUNT         8251 a         3975 c         3162 g         8465 t
ORIGIN      
        1 atttttctat tactattagt taaaatattt taagcataaa aaagaaaggt attgggaagt
       61 gactaaacaa gaaatacaaa aactcgatac aaatttccta ggtcatccca agcctttatt
      121 ctctctatca atggtagaac tttgggaaag atttgctttt tatggcatac gatctttact
      181 tgtgcttttc atggcaacaa ccataagcaa aggtggactt ggaataagca ctgaatacgc
      241 ctcggcaatt tatggcattt ttgcaggatg cttgtattta gcagcacttc ctggaggctg
      301 gattactgat aattatttag ggcaaaaaaa ggctttattt ctaggttctt ttattatagc
      361 tttaggacat attagcatag ccttatctat tttaagcaca cctatatttt tcctaggact
      421 tacttttatc gttattggta ctggattttt taaaactagc gcttctgtaa cagttggaat
      481 gttgtataaa caaaatgata caagatgcga tactggctat acgatttttt atataggaat
      541 taacattgga gcattcattg ctcctcttat atgtggtttt gttcaagcaa aatggaatta
      601 tcatttagga tttggcatag gaggtttagg tatgctaatc tctttgctta ttttatattt
      661 taaagctacc cctgaacttg aagaatttca taaaaattgt actttaaagc aaaactggga
      721 acaaccattt aaaaaaagta aaaatttaac tcttatacta agtataagct tgttaagtat
      781 tattggattt tttctaattt ttattaatct tgcagatatt aatcccataa tactatcaaa
      841 aaaacttcta attgtaattt tactatgttt ggtaatttat ttcatatatc tttttgtttt
      901 taaaacctta aataaaagag aaaaacagca attaacaatt ttaattgttt tattctttgt
      961 agccactttt ttttggagca cttttgaaca aaaacctacc gcttataatc tttttgcgca
     1021 agattttaca aatagaaata tttttgattg gaaaattcca acaaactggt ttcaatcttt
     1081 taatccaatt tttatcatca tacttgctcc tatagcaagt tatatttgga tatttttaga
     1141 gaaaaaaaat atatattttt cttccattgg aaaatttact ttaggaatat tatttgccgg
     1201 cattggtttt atgatgatga cctttgcttc acaaaatcta ataaacaaca atggtttgcc
     1261 aatatccatg gtttggatta tcataagtat attcttttta acacttgggg aattatgcgt
     1321 gtctcctgtt ggactctcta taatggctaa ggttgcccct gatttaatca aaaatcaaat
     1381 catgggactt tggtttgtag caagcgcact tggaaatttt gttgcaggac ttataggagg
     1441 aaatgtcaat attaaaaaca tcgatcaact tcctaatatt tttggacaat gcatgtggat
     1501 gctttttgtt gtagcgcttt tactttttat tgctaaaaaa ccaatttata aaattcttaa
     1561 cgaaaaaaat aagcaattat ctaactaaac ttaaaataca aaatacacca aagttgaaaa
     1621 ttgatcttaa tatttctttt tttatatttg caaaaaaagt aacattatga tataaatcat
     1681 ttaaaaatat tacaaagtta tacatatttt ttaatttctt gtctataatt tataaataaa
     1741 aatacacaaa ggatataaat tgagtaaaaa tgtaaaaaat ttagatactt cattttttgg
     1801 acatccaaaa ccacttttat ctctttcact cactgagctt tgggaaagat tttcttttta
     1861 cggaattcgt cccttgcttt acctttttat gatagcaagt tttgaaaaaa gtggaatgaa
     1921 cttaaaacct gaagaagcaa gtgcaattat gggaattttt gcaagttgtt tatatcttgc
     1981 tgctttgcca ggtggatggc ttgcggataa ttatttagga caaaaaagag caattttact
     2041 aggtgcttta actatagcat ttggacattt gtgcatagcc ttttcttatt ttaacaataa
     2101 aataattttt gttggtatgg tttttttggt tataggtaca ggacttttta aaacttgtgc
     2161 ttctgtaatg gttggaatgc tttataaaaa aaatgatgca aggcgtgact ctggttttac
     2221 tcttttttat atgtgcttta attttggtgc ttttgtagct cctttaattt gcggcttttt
     2281 acaaaaagaa tacggatggc attttggttt tggtgcaggt gggattggta tgcttttagc
     2341 ggtaattatt ttctacctaa aaactatgcc tgatttaaaa gaatttgatg aaaaagttgg
     2401 catagactct acttgggata gaccaagcaa aaaaagcaaa aacgcatttt acatcatcat
     2461 tgtatcaggt attgttttgc ttggagcaat atttttaatc cttggtggtt ttataaaatt
     2521 agatgcacaa gttattaata aaaatattat tctaactatc ttagcttgtg ctggaattta
     2581 ttttttatat cttttcgctt ttacttcttt aaaaatagaa gaaaaaagaa atttaattat
     2641 ttttattgtt ttatttttag cggctgcgtt attttggtca gtatatgagc aacaatacac
     2701 ttcttttaat ttttttgcag aaaaattaac ggataaaacc atattaaatt atgaaattcc
     2761 tacaatatgg tttcaatctc ttggaggttt atttgttata ctttttgcac cttttagtgc
     2821 ttttatatgg actatatgtg ccaaaaataa taaagaaatt tcatctatta ttaaatttgc
     2881 attaggactt ttgggtgcag ctttggcatt tttaataatg gctttagctt caaatcatgc
     2941 aattagttta aatggcgatg ctaatacatt aagagaaaat ttagaaaatt catcacaaat
     3001 tattttagtt tcaccttggt ggcttgtcag tagctttttg cttatggttt taggagagct
     3061 ttgcctttcc cctgtgggac tttctataat gacaaaaatt gcacctaatt taattaaatc
     3121 tcaagtcatg ggactttggt ttgtagcaag tgcattaggc aatgctttag ctggattcat
     3181 aggtggtaaa gcaagtgaag aaaatatagc ttatttgcca aatttatttt accaatgtat
     3241 gtggatatta cttggtgctg ttataatttt acttatactc aaaaaaccta tcaataaaat
     3301 actaaaaaat taatattaag gagaaaatat gagtatttac aaacaaagag tattagaact
     3361 tagaagatta atgaaagaaa ataatattga cgcctatctc atcttaagcg cggatcctca
     3421 tttgagcgaa tatttaccag aatattacaa aaacagagtc tttatcagtg gctttaaggg
     3481 ttctgttgga acagttctta tcacacaaga agagggcttt ttgtgggtag atggaagata
     3541 ttggcttcaa gcacaaaagg aattagaagg tagtggcata cttttacaaa agcaagatgt
     3601 taaaaatact tttaccaaat ggttggaaaa aaatttaagc gaagatcaaa ttttaggcat
     3661 cgattttgca cttttacctt tatctttgca aaaagattta cagattaatt gcaaggcaaa
     3721 tttaaaacat atagatttga taagtccact ttggaaagat cgtcccactt taccacaaga
     3781 aaaaatttat gaacacgaac tagaatactg ctcttactca agaaaagaaa aattagcatt
     3841 agtgcgtcaa aaaatgaaaa atttaaatgt tacctctcat ttaatctcca gccttgatga
     3901 tatagcttgg cttacaaatt taagagggaa tgatgtaaat tataatcctg tatttttaag
     3961 tcatttgcta atcttggaag acaaagcttt gctttttgtt gatcagaaaa aagtaaattc
     4021 agaacttgaa aaaaaattaa atttagatgg gttttggctt aaaaattatg atgaaatcat
     4081 catggagctt gaaaaacttg caaatacaaa tttgcttatt gaaccttcaa aaatgaccgc
     4141 tttactcata aattctttag acaaaagcgt aaaaatcatt caagaaatta atccaagcac
     4201 tcacttaaaa gcagttaaaa atacaaaaga aatagcgcat atacaagatg ctatgataga
     4261 agatggagtg gctttatgta aattttttgc atggcttgaa gaagcgatag aaaataaaga
     4321 attaataagc gaattagaca tagatgctaa agcaagcgaa tttagagcac aaagcaagca
     4381 ctacataagt gatagttttg ccactatagc aggctttaac gaaaacgcag catatccaca
     4441 ttataaagcc acaaaagaga gttttgctta tcttaaaaaa gatgggcttt tacttattga
     4501 ttctggtgga caatataaaa acggcacaac agatattaca cgcgttgtac caataggaaa
     4561 ggctaatgca gaacaaattc atgactatac cttggtttta aaagcacata ttgccatttc
     4621 cagtgcaatt tttccaaaag atatagctat gcccttactt gatgcaatca cacgcgcacc
     4681 tttatggaaa gaacaaattg actatataca cggcacagga catggcgtgg gatatttttt
     4741 aaatgtccat gaaggtccac aagttttatc ttatctatcc cctgtgcttg aaaaaacaaa
     4801 agccaaagaa ggtatgctaa cctccataga accaggtatt tataaagtag gtaaatgggg
     4861 tataagactt gaaaatttag ttattcatac caaagtagaa aatcctaaaa ataaagattt
     4921 tggagagttt ttatacttta aacctgttac tctttgtcct tttgaaatat cttgtattga
     4981 tacaaaaatg ttagatgaaa aagaaaaaga atggttaaac aattatcaca aagaagtatt
     5041 tgaaaaactt tctcctaagc taggtgatta tccaaaagct ctagtttggc ttgaaaaaag
     5101 aacaaaagcc atcttttaag atacttttgt taacatagat aaattttcct tgtattaaac
     5161 ttataatttg tttaatacaa ggtttttaaa ccaattgcta aaaaagtttt ttttgaaaaa
     5221 ctcaatttac aactaaaaat tatttaaaat atccaagttc aatcattttt tgataaattt
     5281 tagctacagt tgcccctgaa gtaatatttc tcccaccatg ttccaaaaga acggtaacta
     5341 catattttgg cttagaataa ggagcataag aagtaagcca cgcatgagat ctagtataat
     5401 actcaaattg tttttcatcg accctatttt tatctgtttg tgaaaatccc acaacctgag
     5461 cagttcctgt ttttgctgca actttcacat caagattatg caaataacga taagaagttc
     5521 ctccttgctc attagcaaca gcatacattg catctcttat ataaggcaat tgactctttt
     5581 caaataaagt aaaaatttct tttttatttt catccatttg attttctata gttgtattat
     5641 tattattttc tatgcttttt aaaaaatgag gtataacctc tccacctttt gcgatttgag
     5701 ccgtatatct agcaatttgc ataggtgttg caagaaaatt accttgacct atagctgtat
     5761 ttaaagtatc accttgaaac caagattgtc tatatctttg catcttccat tctttgcttg
     5821 gtaaagttcc tacaaattca ctaggtaaat ctacccctgt tttcgctcca aagccaatgc
     5881 gagataaagt ttcacttatt tgatcgattc caacttgcaa actgccatta taaaaataaa
     5941 catcacaact atattttatc gcatgtttta aatccacagg tccatggccc gatcgattcc
     6001 aacatctaaa aaacctgcct ccaagctcaa tgcttccatt gcaaacatat tgagtcgacg
     6061 ggctaatatt tttagaattt aaaaaagaaa gccctactcc catttttaca acagaacctg
     6121 gaggataata tccatttata agtttatttg taaaaggatg atcaagacta tttgaaagct
     6181 catcccaatc cttaaaagaa atccctgtta caaaaggatt aagatcatat tcagggaaac
     6241 tccctgcagc taaaatagat ccatcattta cattcataat tatagcagct ccagcattcc
     6301 cttcaaacaa tgaagttaaa taagactgaa gctctatatc tatcgtaagt tctatatcat
     6361 tagacatagc aggagtgtaa gaaagctgtt ctacttcttg atttaaggca ttaaccttat
     6421 aaaccctagt tcctttttct ccttgtaaaa tatcattata atagcgttct ataccgcttt
     6481 ttcccgtata gttagaaagt tttgctattt cattttcttg aacatcttgc aaatttgcct
     6541 tacctacata cccaataata tgcgaagcca attttccaaa aggatatttt ctttttacaa
     6601 caggatctat ttttattgtt ttattaagat ttaactctga ataatgcgga ataatctcat
     6661 catagggtat aaaatctact actttaataa aatcttgatt atagtaagaa tcatttctct
     6721 tataaatttc tgctaattta ctagcattta aatcgggaaa taaatttgta agttcagata
     6781 attctttatc taaaattcct ttatttgact ttttaatact caaataaggt ttaatagaaa
     6841 tactaaaacc caaatcatta atagccaata aagttccatt tctatctgta atttgacccc
     6901 taacaggtgg taaaaattca gtttttatgg cattttgttt agcaagctct tcataatata
     6961 catttgattt tatactcaaa taatacacac gacttaataa aaatataaaa aacaatagta
     7021 taaatccaac aactaaacgc attctcattt aaattttacc tttaaaaaac acataagcta
     7081 aacaacattc tataaaaact gaaacaatat acgcccatcc taaaatttta attttttcat
     7141 ctccaatata agacaatatc atatccaaaa acaaaataat gccgtaagca caaagcacaa
     7201 aaacaacagg gataaattta ccaattttta aatttgtctt aatccaatct gcacaaagat
     7261 aataaaaaat aaaaaatgcc aaccaagatg aaaaaataaa aaaattataa gttatatcag
     7321 taaaaaataa aaaaaataaa gaaaaatacc atctaaaatc aagctttgaa aaagttcttt
     7381 ctctctcttc tagtaagcaa aacatataac agaaaaaaat cccataaagt aacggagcat
     7441 atacaaaagt cgaaccaaga atctgataga ttagaaaaaa aaatcctaaa aagacataag
     7501 ctccattaaa ttttgcttta taagcactta aatttcttct catttaccaa gacctaaagt
     7561 ttgatcgata ataatatctt ctaaagaatc aaggccaaat ttattcaaat ttgaaactaa
     7621 aatagagtct ttaaattcat tttttaactt agctttttca ctttgattta atttatcgca
     7681 tttggtaaaa acttttaaaa ttttttgatc aggtcgtaaa aatcttttca aatagtcatt
     7741 taaatttaca tcgatctcta aatgagtatg tcttgagtcg attaaatgta taaataactt
     7801 tatcgaggtt cttaatttta aaaattcatc taagttttga ttccatattt cttttaaatt
     7861 tttagaaacc tttgcataac caaaccctgg caaatcgata aaattgatat taaatttttc
     7921 ttcatttctt ttacaagtta cttcgaaaaa atttataagc tgagtttttc caggagttgc
     7981 cgaacttttg gctaaatttt tttgtttaca caaagaattg attaaagaac tttttccgac
     8041 attggaacgc cccaaaaatg ctacttcact aaaatttgag ctcaaattct catcaaattt
     8101 cactaaagaa gtgataaatt tagcactaat tatcatttgt ctttaagatc aaatacaaaa
     8161 cgagcaggtt tttgatcctt gctctctact cgataaatat tagcttttct atcgactatt
     8221 attttatcac caaaaagttt ttgattgctt ccaagctcat ttatataagc atggccatta
     8281 atctcgtaag tatctttaat aacattataa ataaatttat ctccactacc tttataagtt
     8341 ttacctttta aaacaatctt aaacctagcg ttttgcattg cttcataacg aataggtttg
     8401 cgatttttat ccgtataaat aatcaatttt tcagaattta aaatatcatc acccctaatt
     8461 acttctacat ttccactaag aatactttca cccttatttt catctgaata aaaatttaaa
     8521 gcttttactt caatttgagt tgcccaagtt acacttacac aaactaacaa taaaattatt
     8581 tgtcttgcaa ccacgcgttt actccttgga tatttaaaat tttgtttttt acatcatagt
     8641 ttaaagtatt tccgttaata atacttccat taattagagc tttaaaatca gtatttgtat
     8701 atagaacttt attcttaggt tcgtattcta cctcttggga aataattttg acattattag
     8761 cacctatata agtaacattt ccttcaaata aaaccttgct catatcttta ttaaaaaatt
     8821 ctaaacgatt tgcactaaga ttaaaatcta aatttaaagt aataaaatca ttaaattcat
     8881 ctctatctgc atatctcacc caagaatttg ccttataata tgccttaatt gtactagtat
     8941 tactctcata agctttcaaa tttttagcct caatattttt aaaatttaaa gcattagttt
     9001 gcaaattcaa agaatatgga tcttgcaaac ttaaaatcgt aaaagtaatt gtaaaaagag
     9061 caattaaaat tccaaaaatt tttatagcca aagcttattc cattcttctt ctagatgatt
     9121 tttttctact aaaatttcta tcatctgtgc tacagcagcc ttaccacctt ttttgctaag
     9181 cactatgtct acatttaaat ctttatgacc atcttttggc ttaaaactaa gtcctacact
     9241 ttcaagcaaa gccttatcgt taaaataatc cccaatagcc gcacactgag aaaaatctaa
     9301 attaagtttt tgtaaaattt cttttgcaca agctaactta tccttgatgc cttgatataa
     9361 aatttctatt tttaaatctt tagctctttt ttcaacacaa ggacaatttc tacctgtaat
     9421 aatagcaatt tttttaccaa gctttagcca agcctcgata gccgctccat cttttacatc
     9481 aaattcttta ataaattctc cattagaagt ataaataatc ttcccatcag ttaaacagcc
     9541 atctacatcc aaaaaaatca attctgtcat aatttctact ctcttacaac aaatgcacct
     9601 gcaaatgcac cacttgcagc aaaatctctt gcttcatctt cacttctaaa gcctgttaag
     9661 aaaacgcgat ttaacccatc cactgagctt gtgcgtatag tagagctata agttctataa
     9721 gttttatatc ttgctgctat cgtttgtgct ccagctgggt ttttaaaggc tccaatttga
     9781 accatgaaat ttccaccttc ataaatttgt ccattatttg caatctctcc actatttcca
     9841 tagtttacat tagaatgtac aatattatta cccgaattac ttgatccaaa ccctataacc
     9901 tcaagcctta ctggagctgt tcctgaagca atcatatcaa tttgactagc agctcctttt
     9961 gataaatcta taatacgatt atttacaaaa ggacctctat cattcacacg aacggtaact
    10021 tgacgattgt tatttagatt ggttactttt aagatggtat tcataggtaa agttttatga
    10081 gccgcggtta aagcattttg attataggtt tcgccattag aggttttctt gccgtgaaag
    10141 cctggcccat accaactcgc aataccatca gcagtttcgc ctactgctac aacagtagga
    10201 taataagttt taccgttgat agtataaggc ttcattgttc ctttagtccc tgaagaacta
    10261 ggactgcttt taaaatcatt tgaaggataa tacacttgag cattatccaa gctagaaaaa
    10321 aaactagtgc ctaaacaacc actaaaaaat aaagccccta gactaacggc tgacaacttt
    10381 agtgtaattg tttttatttg catttttatt ctccttgatt ggtataatta atttttgatt
    10441 aatgctaaga tgattttttg ctattttatt gaattctcga atttcatcaa cacttatatt
    10501 ataatttttt gctattttat ataaagagtc accagactta acggtataag ttcttgtcat
    10561 aggtatagtt gtatcaacct ttgcaagttt ttctgcttta aaatttttat caaaaaatgc
    10621 tactttatta agtggtatat acatataata ccctttacca ggaggcgtaa aattatgttt
    10681 aaattgtgga ttatatttct taaaagttgc aagatccata tttaaatttt tagctatttc
    10741 ttttaaagat gcagaagaag gcacatcaac ttttgcaaat tcattgctta aagcataatt
    10801 cattaaagac gcatctttat ctagtaaaaa atccctatca ttagctaaaa aagcaagcgt
    10861 taaaatcttt cttataaaat ttctagtttc taaagaaaga tatttcttat cagggttcaa
    10921 taaaacactt aaatcatcac ttcctgcttg cttgatagct tgtcttagct tgccatttcc
    10981 gcaattataa gctaaaagtg ccaaatacca tttgccaaat tcttctttta actcttttaa
    11041 ataatttgta gcggcataag ttgacttgac cggatcacgc ctttcatcaa cataagcatc
    11101 gattcttaaa cccaaatttc tagctgttgg ttgcataaat tgccaaaccc ctacagcctt
    11161 ggcattagaa acactatgag ttttcaagcc tgattcaacc atagctagat acaaaatctc
    11221 atcaggaact tcctgctggg ataaaatttt tcttatcata ggagtaactt ttgaaaaatt
    11281 ttgcatacta tctattaaag tttgagcatg ttttgatttt atatcttgtt gagtttgcac
    11341 aaaaatcaaa tcactaataa aacttggatt aatatctaaa tttcttaaaa cattcatttg
    11401 tctttcataa aattcaggag tattaatttg tgcaaaaaga aaattaaaac atattaaaaa
    11461 acacaataaa ttttttttca ttaataacct ttaaaaaata atttttcaga attgttaaaa
    11521 caaatttcta gaagctcttt tcttgataaa ttcaatactt cacacatttt gtttgctaca
    11581 aattgagtta acaaaggttc atttctttta ccgcgataag gctctggagt aagatatgga
    11641 gcatcagttt caagtagtag tctatctttt ggaattttag gtaaaatttc aactaatttc
    11701 ttagcatttt taaaagttaa aactccccca ataccaaaat aaaatccatc ttcaaaaaga
    11761 gttagcaaat gttcgcttgc attaaagcag tgtaaaactc ctcctacaag atccttagaa
    11821 tacccatgta aaatctcata agtatcatga tttgcttctc ttgagtgaat gataacaggt
    11881 tttttaaatt caatagcaag ttcaagctgt gcgataaaaa tctttttttg attttctttt
    11941 tctttttgaa tttcttcagc aagatcactt ttaaaacgga aataatcaag cccacattca
    12001 cctacagcta cacacttttc atcgtataaa tactgcctta aaattttctc atcataatta
    12061 tcaatttcat aaggatgcac ccctactgca aaaaaaatat ttttatattt atgagcaatt
    12121 gtagctgcat agggcaaatc ttttatatca gcaccaggta tgatgatttt ctctatacca
    12181 tttttaaaag cacgatttaa agtttcatct aaatcatctt taaatgcttc actgtctaga
    12241 tggcaatgtg tatcaacaat ccttaaacca tcttgaaaat caagatttaa gaacatactt
    12301 caactctatc cttgccatta tcttttgctt gagacaatat tttacttgct ttatcaacca
    12361 aagaatcaat cttatctcca ctttttccaa aaaccacgcc tatagaagct gtaaaaaaga
    12421 cttcatctaa attaactaaa acaccagcct tttttatatt tactcgtata cgagaaaaga
    12481 ttttaatcgc tctttcttgg gatatatttt taagtaaaat acaaattttt tctgcactat
    12541 atctacctac aagatctctt cctttagttt cattgactat ttcattagca cagattttaa
    12601 ttacttcatc accaacttca cgaccgtatt catcgttaat catttgaaga ttatctatat
    12661 ctaagaaagc aaaagcaaat tcctcgtctt ttgttgctat ttcgttaaaa taatcatcta
    12721 ttccatcgat taaagcatta taatttttaa ccccagatac aggatctaaa acattataag
    12781 tgcttaaaaa ttttttatca tccatgtaag ataaacaatg atctaagcga caattaaaac
    12841 tttctttgct taaaggctta aacaaatact cattaactcc atttttaaaa gaattcgctt
    12901 caaatgaatc attatgatcc cccaaaagaa tcacacctaa ttcatcatca ctaaaacgtt
    12961 ctcttacttg aatcaaaagc tcaaaaccgc taattactgg catattgaca tctgctataa
    13021 taagcttaac atcattatta tcatttaaat aactcattgc ttcttcacca tgagctgcag
    13081 ctaaaacatt aaattgtctt tgagtaagta tttttttaat ttcattacgt tcaggtagct
    13141 tgctcatagc taaaatcact ttagtttttg catattgatt aagttttaca atagaactaa
    13201 taatctcatc aatgcaagtt tcactttctt taaaaatata atctaatata tctttatcca
    13261 taaatttttc tttagtagcc ttatcaccac tagctgtaag aacaatagca ggaattttct
    13321 tttcaataac ataatccaca acttcaccat ttggggcatc tggcaaacat aaatccacaa
    13381 aagctaaaaa ataatcatta ttcattaatt ccttagcttc ggcaaaacca aaagcaatat
    13441 ctacctcata atctaaagtc atttgaattt ttttagctaa aagtttgccg agcattttat
    13501 tgtcatcaat aattaaaatt ttcttattca tagtgtgtaa aataccttta tatctaaaat
    13561 ttttaatata tttgtttcaa aagaaaggaa attttatagt tgtatatttt aacatagcaa
    13621 aataaaaaat ccgcttaatt cttaaacaag gtcttagcaa attcgattgc ttcataacta
    13681 acaagctctc cacttaccat cctagcaagc tctttaattc tttcttcttg atcaagcttt
    13741 tttaccttac tttcttcgcc atttttttca actaaaaaat gattatgcgc cttagaggaa
    13801 agttgaggca aatgagaaat agcaaaaatt tgataaaact tagaaagctc ctctaaaacc
    13861 ttggctatac tcatagcctc ttttccgctt aaatttgcat caatttcatc taaaaataat
    13921 atccctttac ctgcatttaa aattttacat tctgtggcta taaaagcaag tcttaagcga
    13981 tttaattcac ccgaacttaa attttttaaa tgagctaaat taatatctag tattatctca
    14041 tctttaccta aaattgaaat tttttcattt tctttaagtg tcaaacttgc gtctttcata
    14101 taaagatctt taagataatt atttaaacat ttttctaatt ttttaaggtt tttctttctt
    14161 gcttgagtta aaatttgtgc tttttcttct aatttttgtt ttaattcttg aaattttttt
    14221 tcaagttctt ttttttcaaa acttaaattt tcataatgtt ctagttcatg ttttttttgt
    14281 tttaaaactt ctaaagcatt ttctatgctt tcataacgct tgatgagata ggataaattt
    14341 tcaatgcgat ctaaaagtgt ctccacatca aaatccaaat cttccatttt ttgattttcg
    14401 caaatcacac gcaattcatt taaacattca ctaaaaaaac tcggatcaac ttcgcttaaa
    14461 tttaaagctt caataacaac tttttcaagc tcaaaaatat gctctgtctt actccaagct
    14521 tcttctaatt tatctttttt agaaagcttt tttttaagta ttaaaagctc ttcatactca
    14581 cctattttag gattaatgct tgaaattttt tcaatttgta ctctagctaa ttcttttaat
    14641 tcttctactt ttttttcttc ttctaaaatt acattaaact cattagaaat ttgactataa
    14701 gcattaaaat cttttttaaa atcttctaaa aaggaaacaa aatttgtatt ttcttgcatc
    14761 tccaaggcat ctaagagatt taaaaatttt tcatttccaa attcgttatt ttcctttgca
    14821 cttaaatact taataaaagt tttacttaaa ttttgcaaac tttttttcgc tatgctttga
    14881 ttgttaataa aatattttgt gtttttttct tttaaaagct taaaaacatt ctcctcttca
    14941 ctttctatac caaaactttc taaatccaac ttatcatcta gttctatttc gacaatttta
    15001 gcctcacttt cactcaaaga aaatgcggat aaaattcctt taaacaagac cgattttcca
    15061 gctccactta ggcctgtaaa aacggtaagc cctttagaaa tttcaagctc agccttttta
    15121 aaaccaagat tttctttcat aaaaattcta tttatcatca atttccccag tgtaattttt
    15181 cttttaaaat ttgaaaataa tccctatttt ttgggtgaat taaagccaca tttttatcac
    15241 ttaaacccac ttttatactt ttaaaatcat tcattttata attttcttgc ccatcaatac
    15301 aaagtataca atcctttgcc ataatctcta tttcaaaacc ttttggcaaa acaatagggc
    15361 gttgtgttaa agaatgagaa caaacaggag ttaagataaa agcttgagct aaagtataaa
    15421 ctatgggccc atttgcactt aaattataag ctgttgaacc cgcaggagtt gcaacaataa
    15481 gcccatctcc aaaatattca ttaaatttct tttcttttct aaaaacttct atatgagcca
    15541 tagaagcttg attgttttta ctgataacca catcattaaa agccaatttt tctaagattt
    15601 ttccttgctt atcttctaaa aaaacactta acaaataagg cttttctatt ctaaattctc
    15661 cttgaaaaaa agcttgaaaa aaattttcag cttcatcaac tttaaaatct gttaaaaaac
    15721 ctaaatgtcc agcatgaatt cctaaaactg ctttatcata ttcacaagct ttacgacata
    15781 aagaaatcaa agttccatct ccacctaaag aaataacaaa atcagatatt ttaaacaaat
    15841 catccaatcc atactttggc aaatctaaaa tttcagaact ttctttaaac aatacaagct
    15901 caactttata tatagataaa atcgattgaa gttttaaaat ttccttatct aaactcacat
    15961 tgggtcgtgt aacaagtccg atttttttaa tatttttata atctatttta ttttgcataa
    16021 aaaattatat caaatcttag caaagcaaaa gaataaaaat actataattt tgctcattat
    16081 cttaaaaaat ctttttcaag gaataaattt gcgaagtcat tataatacag acttgggaat
    16141 ttcccatgtt ggtcaaagcg ttaaactttg cggttgggta aatagctacc gcgatcatgg
    16201 tggagttatt tttatagatt taagagatag aagtggtatt atccaacttg tttgcgatcc
    16261 aaatgatagc aaagaagctc atgaaatcgc ttccaatgca agaaatgaat ttgtacttat
    16321 tgcagaaggt actattcgtc cgcgtggcga aggacttgta aatcctaaat taaaaacagg
    16381 agaaatcgaa gtagttgttt ctaaacttac catagaaaat gaaagtgccg tacctccttt
    16441 tgctatcgct gatgaaagtg taaatgaaga attacgctta aaatatcgct ttttagattt
    16501 aagaaatcct aaactttatg aaaattttgc cttgcgttct aaagcttgta tagcagctag
    16561 aaattctttg gcaaatatgg gatttttaga agttgaaacc cctattctta ccaaagctac
    16621 tcccgaaggt gcaagagatt atctcgtgcc ttctcgtgtg catcagggtg aattttatgc
    16681 tcttccacaa agccctcagc ttttcaaaca acttttaatg tgtagcggtt ttgatcgtta
    16741 ttttcaaatc gcaaaatgtt ttagagatga agatttaaga gctgatcgcc aacctgaatt
    16801 cacacaaatt gatgttgaaa tgagtttttg cgaacaaaaa gatgtaatca atgtagctga
    16861 aactttttta aaagatattt tcaaagcttg cggcaaagaa attcaaaccc cttttagaca
    16921 aatgcaatac aaagacgcta tggagaatta tggctctgat aagccggatt taagatttga
    16981 tcttaaattt attgatgtga ttgatatttt tgctaagtca aataatgaaa tttttgcaaa
    17041 tattgccaaa gatacaaaga aaaatcgcat caaagccata cgcgttccaa aaggcgatac
    17101 tattttttca aaaagacaaa tgcaaagatt tgaagaattt gtgcgtaaat ttggtgccca
    17161 aggcttagct tttatacaag ttaaagaaga tgggcttaaa ggtccgcttt gcaaattctt
    17221 tagcgaagaa gatttaaatg agctaagcaa acgctgtgag cttgaagtag gagatgtggt
    17281 atttttcggt gcaggagcta aaaaaaccgt gcttgattat atgggaagat ttagaatttt
    17341 cttagccaac gagttaaatc ttatagatcc aaatgcctta gaattcttat gggttgttga
    17401 ttttcctatg tttgaacaaa atgatgatgg aagttattct gcgatgcacc atccttttac
    17461 catgccaaaa aatatcgatg agactgattt agaagaaatt tcatctattg cttatgatgt
    17521 agttttaaat ggcgttgagc taggtggagg tagtataaga atccataaaa acgatattca
    17581 acaaaaagta tttaaacttt taaatatcga tgaagaacaa caaaaagaaa aatttggctt
    17641 cttgcttgat gctttaagtt ttggtgctcc accacatgga ggtatcgcta taggacttga
    17701 tagactcatc atgctagtta caggagcaaa cagtataaga gaggttatag cctttccaaa
    17761 aacccaaaga gcgcaatgct taatgacaga tgcaccatcg cctgctagca atgaagcaat
    17821 gagagaatta ggaatcaaat taagggagaa tataaaatga aagaattgtt tttaatcata
    17881 ggtgcaccag gtagtggaaa aactaccgat gctagtttaa tcgcacaagc agatgcgaca
    17941 aatatcacac actattcaac aggagatctt ttaagagctg aagtagcaag cgggagtgag
    18001 cttggaaaaa ctatagatag ttttatatcc aaaggcaatc ttgttccttt agatgttgtt
    18061 gtaaatacta tagtttgtgc tctaaaagct gctccaacta aaactattat catcgatggt
    18121 tatccaagaa gtgtagagca aatgatggaa tttgataagg ttttaagtga gcaaaatgaa
    18181 atttgtctta aaggtgtcat agaagtaaga gtaagcgaag aagttgccaa agaaagagtt
    18241 ttaggcagaa atcgtggtgc agatgataat gaagaagtgt tttataatag aatgaaagtt
    18301 tatacagaac ctttaaatga aattttagat ttttatcaaa agaaaaaact tcattttatt
    18361 atcgatgggg aacgcactat cgaacctatc gttgcagaca tgaaagaact gattaaaaaa
    18421 attcaaagta tataaggaga aaaaatggat ttaagcaaaa tcaaaatcgg agatattcca
    18481 aataaaatca atgccgtaat cgaaattcca tacggctcaa gcatcaaata cgaaatcgat
    18541 aaagatagtg gtgctatcat ggtagatcgc gttatggcta gtgcgatgtt ttacccagca
    18601 aactatggtt ttattgccaa tactttggct gatgatggtg atcctgtgga tattttagtg
    18661 cttaatgaat atcctatcca agctggagcc gtgattcctt gtcgcttaat tggtgtttta
    18721 atcatggaag atgaaagcgg aatggatgaa aaacttcttg cagttccaaa ttcaaaaata
    18781 gatgcaagat atgacaatat aaaaacttac acggatttac cacaagcaac tttaaataaa
    18841 atcaaaaatt tctttgaaac ttataaaatt ttagagccaa acaaatgggt taaagtacaa
    18901 gattttaaag atgaaaaagc tgcaattgaa attttagaaa aagcaatcaa aaactacaaa
    18961 taatcttagc ccttcaaagg gctaaactca aggaaaactc gcaatgaaaa atatcgtttt
    19021 aggtggtggt tgtttttggt gtgttgaagc cgtatttgaa cgcctaaaag gtgtaatcga
    19081 tactgaagtt ggatatagcg gaggaaatcc aaatcctagc tatgaaagcg tgtgtaatgg
    19141 tgatggtaac atagaagttg tcaaaataaa ttacgatgaa aaacaaatct ctcttcttga
    19201 aatcttaaca ctctttttta aaattcatga tccaacaagt atagataaac aaggtggaga
    19261 tattggtata caatatcgct caataatctt ttacgaaaat gaagaagata aaattttagc
    19321 tcaaaatttc atcgaagaac agcaaaaaat atttagcaaa aaaatagtta ctaaaatttc
    19381 aagattgcaa acttactaca aagctgaaaa ctatcatcaa cattatttta taaataatcc
    19441 caatcaagga tattgtcaag ctgtaatagc tccaaaacta caaaaaatac aatcaggcta
    19501 atttcatctt tttaaggtta aaaaaaattc aactttattc acagcctttt cacgctgtga
    19561 ttttcttttc aaagtactta aaaatagaac tttaagcttt aaaataaaga aaaaattatt
    19621 tattgttttt taagtttttt tatgaatttg tatttaaatg tgaataattt tatcaattaa
    19681 cataatttcc taagtttagc tatgaaaaat ccatcatagt ctaagcttgg taaaatccgt
    19741 ctgcattttg aaatttcagc aaattcttca ctttgccctg ctttagcctc aacattttcc
    19801 aaatcaatat ctaaaagctc taatttaaac tcacttttta aagcattctc tatcacttct
    19861 tcattttctt ctttggtaaa ggtgcaagta ctatatacaa gctctccacc tatttttaat
    19921 gcctttaaag cagaatgtag aagttttttt tgagtttttg caatattttt gatttcttta
    19981 taactttttt ccaaatcaaa acctatttta gcaaaagtcg aacaaggtgc atcaagtaag
    20041 attttatcaa attttaaagg acataaattg cctatatttt taccatcttt cataaaaact
    20101 ttagcattca cgccgtaatt tttaagattt ttttgcaaaa taaaaaatct atccctactc
    20161 atctcattgc aagctaaata acctgtattt tgcataaaat ttgcaagatt gatactttta
    20221 ccacccggag ctgcacacat atcaagaacc ctttgccctg ctttgacttc taaatttaaa
    20281 gcacacaaat aagaagaata attttgtata taaaagtgcg cctcattaaa agctttcata
    20341 gaacttaaga tagccttatc tttggcatca aacaaataac aataagcatt gatcttttta
    20401 aattttaatt tttgttttaa aaattctttt tctaattctt caatgctaat ttttaaagta
    20461 tttgcaaata cacaaacatt tttttcttga gtaaaagaag ataaaatatt ttgcatttca
    20521 tctttggtat aaagtttttc tattctagag agcaaaataa tcctttatca tgataaaagc
    20581 ggataaagag tctaatttac catctttttt gcgtgcattg gctacgccgt atcctaaagc
    20641 ttctttgctt gttccgcttt catctacaaa gcaaatttct ttatcaaatt caagcaaaga
    20701 aacaaaatgc ttaatgcgtc ttgtcatttc ttcttcactt gatccaccct taggaatgcc
    20761 aacaatgagt aaagaaatct catgtatttt aagtaaattt ttaatttcat tagcggcttg
    20821 attgcgattt tttcttaaaa ctgcatctaa aggcaaagcg atctttttat ctatgcaaag
    20881 cgctacacct atgcgtttta aacctacatc taaagccaaa gctctcatgc taaaaccctt
    20941 ataaaaagcc cttctatgga aatttttccc tcaagttcat attcataaac tttttgtcca
    21001 taaattttta aagcctcatc aacactcaca ccttttttac aaaactctaa aaactcatct
    21061 tgatttatat ctatacttgc aaactcactt acaaattctt tgaaatcaca aatcaatttt
    21121 gctttatttt cctttaaaag caaattagtc cctgtacttt ctcctagtct ttgcggtaaa
    21181 acatataaag gtttattgag ttctaaagca agttttgcac tttgcataga accacttttt
    21241 atatctgctt gtgcaactac aacggcctta cttaaagtaa taaccaaacg atttcttagt
    21301 aaaaagtcat aattttttgg caaataatca tcttcgtatt cgcttaaagc caaagcattt
    21361 tcataaattt gtttaatgat tttttcatta gttcttggat aaatttgatc caaaccatta
    21421 gcaaaaatac ctatagtatt tggcatagcc gccatacttg cggtgatatc cacacccaaa
    21481 gcaccgccac ttaccacaca aagatgagca tttttaagca tactcgctaa ggaaaaaaca
    21541 caatttttcg tataaacact catacgcctt gaacctataa tagcaatttt atcttgtttt
    21601 aataaagata aatttccttt atagtgtaat tttttaggag gcttttttaa atctttaaaa
    21661 agttctaaaa attcatcagg caaaatttca cttgccataa atttcactca aatacacaag
    21721 atcaacgctt tttaacaaat ctttactttg ctctaaagct ttaaaagtat ttttcctagg
    21781 atgtcctatg gctataacaa aacctttttt ttgtgcaagt tttactgcat tttgaatttg
    21841 ttttttaaca taattaacat catcttcatt atccaaaaac acatctcttt gtatataagg
    21901 aacatttaac tctttggcta ttttatttgc tttagaattt cctatagttt tagaatctac
    21961 aaaaaatata ttttgatttt ttaaaacctc ataaagcttt ctcatagctt cttcattgct
    22021 tgtaaataaa cttcccgtgt gattattgat gtatcttaaa tccttaaaat cttttttaat
    22081 ttgcttgatt tttttaaaaa ttctttcttt gctatcattt ggatttaaag tatcaagttc
    22141 aggtttattg taattaatcg ctgctaaagg taaatgcacc atataaaaat caaattttaa
    22201 agcaagtttt ggcgtttcgc tatggttttt atctggcgga aaaaaagaag gatttaactt
    22261 taaatttaaa gcttttaaac ctctaacctg acttgcattt gccatatcat cgataataat
    22321 agcaagtttt ggttttttag aaattttatt taaatgaata tcttcattaa aagttaaatt
    22381 ttgatcttgg gttaaatttg tatcttttgg aataaaattt tgttccaaac tctgattttg
    22441 ctctaaactt aaattctgct ccacactgct taaattttgc tcatttaaac ttgtatttaa
    22501 atcatcgatt tcttgaattt tttgctctaa aatacttaca aatttattat tatcaaactc
    22561 attctcttga aaaataccaa tttcataatg atctttattt gatgaaatta aatcttcttg
    22621 tttatcaata aaataatccg gcttaacaga agaaacatct tgggaatttt gatattttac
    22681 taaaattccc aaagctaaag ctatacaaag taaaaaaagt atagctatga ttaaataacg
    22741 ctgaatttga actaattttt tctttgacaa tgtttagttc ttatctttat ctactaattt
    22801 tttagcactg atccaaggca tcatcgcacg caaattgcgc cctgtttttt ctatcaaaga
    22861 atcattcata tttttgcgtt ctgcatgcat tctagcaaaa cctgcacggc gttctaagat
    22921 aaaatctttt gcaaaaacac cattttgtat atcttttaaa acacctttca tcgctttttt
    22981 agtctcttca gtaataatct ttggccctgt aatataatcg ccgtattctg cagtatttga
    23041 gatagaataa cgcatatctg caataccacc ttgataaatc aaatccacaa tgagtttcat
    23101 ttcatgcaaa cactcaaaat aagccatttc aggttcataa cctgcttcaa ccaaagtctc
    23161 aaaacctgct tgaatcaaag cactaagccc accacaaagc acagcttgtt caccaaaaag
    23221 atctgtttct gtttcggctt taaaggttgt ttctataata cctgtgcgtc cgcccccaat
    23281 cgcacttgca taacttaagg ctaaattttt agcattttta ctttcatctt gatggatggc
    23341 tattaaacaa ggagttccac ctcctaaagt aaattcattt cttactgtgt gtcctggtgc
    23401 tttaggtgct atcatgataa catctatacc ttttggagca acaatttgac catagtggat
    23461 attaaaaccg tgcgcaaaag ctatagcctt gccttcactt aaatttggtt ttatttcgac
    23521 attaaaaata tctgcttgaa tttcatcagg agctaaaatc ataaccacat ctgctgtctt
    23581 agaagcttca cttacactca ttacttcaaa accagcattt tttgctttaa cagcacttac
    23641 actaccttca cgaagtccga taattacatt tacgccatta tctcttaaat tcatcgcatg
    23701 agcgtgtcct tgagagccaa agcctataat tgctactttt tttgatttga ttaaatttaa
    23761 atcacaatct ttatcataat atactgtaat agccatattc actccttaaa aattcaaaaa
    23821 ttaaaggtat tattatagca attaaagtat aaa
//
LOCUS       DAZAND010000014        22997 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.014, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000014 DAZAND010000000
VERSION     DAZAND010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22997
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.014"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..272
                     /locus_tag="ACHDOB_000428"
     CDS             <1..272
                     /locus_tag="ACHDOB_000428"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325369.1"
                     /translation="KIQNLILEKNKQNISLQGNLNINNSYQAKLQVISSDEPDEIFPW
                     TKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKINGSEFSNMDLN"
     gene            272..1453
                     /locus_tag="ACHDOB_000429"
     CDS             272..1453
                     /locus_tag="ACHDOB_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN3325370.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTISSEGVSSK
                     DTHYILASAMIKSLRGSDIDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNA
                     LNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            1516..2244
                     /gene="dapB"
                     /locus_tag="ACHDOB_000430"
     CDS             1516..2244
                     /gene="dapB"
                     /locus_tag="ACHDOB_000430"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HFN3325371.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQAQISILYDKGGNLEELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLKNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            2246..3583
                     /gene="purF"
                     /locus_tag="ACHDOB_000431"
     CDS             2246..3583
                     /gene="purF"
                     /locus_tag="ACHDOB_000431"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HFN3325372.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNTEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(3586..4971)
                     /gene="fliI"
                     /locus_tag="ACHDOB_000432"
     CDS             complement(3586..4971)
                     /gene="fliI"
                     /locus_tag="ACHDOB_000432"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030257 - type III protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0030254 - protein secretion by the type III
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HFN3325373.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEVSKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(4971..5543)
                     /gene="folE"
                     /locus_tag="ACHDOB_000433"
     CDS             complement(4971..5543)
                     /gene="folE"
                     /locus_tag="ACHDOB_000433"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HFN3325374.1"
                     /translation="MQKKFEDCVKTILEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKEILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            5687..7021
                     /gene="tig"
                     /locus_tag="ACHDOB_000434"
     CDS             5687..7021
                     /gene="tig"
                     /locus_tag="ACHDOB_000434"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HFN3325375.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKESKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLDGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFMPKTEKSEKASKKEKEDK"
     gene            7021..7605
                     /gene="clpP"
                     /locus_tag="ACHDOB_000435"
     CDS             7021..7605
                     /gene="clpP"
                     /locus_tag="ACHDOB_000435"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HFN3325376.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            7641..8168
                     /gene="def"
                     /locus_tag="ACHDOB_000436"
     CDS             7641..8168
                     /gene="def"
                     /locus_tag="ACHDOB_000436"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HFN3325377.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            8165..9670
                     /locus_tag="ACHDOB_000437"
     CDS             8165..9670
                     /locus_tag="ACHDOB_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HFN3325378.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASVAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFTSPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEVLMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNINKTHILEALSFRARN"
     gene            9672..10370
                     /locus_tag="ACHDOB_000438"
     CDS             9672..10370
                     /locus_tag="ACHDOB_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HFN3325379.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            10354..11724
                     /locus_tag="ACHDOB_000439"
     CDS             10354..11724
                     /locus_tag="ACHDOB_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HFN3325380.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIKKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCQKEPDFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITLCMGALKEILLEDFAKEFVGRIKIANLGISSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANVSAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            11715..12281
                     /gene="purN"
                     /locus_tag="ACHDOB_000440"
     CDS             11715..12281
                     /gene="purN"
                     /locus_tag="ACHDOB_000440"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HFN3325381.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCLCNKKD
                     AFGIQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLSGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            12353..13072
                     /locus_tag="ACHDOB_000441"
     CDS             12353..13072
                     /locus_tag="ACHDOB_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HFN3325382.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            13065..13274
                     /locus_tag="ACHDOB_000442"
     CDS             13065..13274
                     /locus_tag="ACHDOB_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HFN3325383.1"
                     /translation="MAKDANGTELNAGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            13284..14468
                     /locus_tag="ACHDOB_000443"
     CDS             13284..14468
                     /locus_tag="ACHDOB_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HFN3325384.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFCIINAYNETLKIYKDLAKQYRYKMYV
                     IVFDNSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSSDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKIANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDKKGFECIEIKNQIYK
                     KK"
     gene            complement(14481..15839)
                     /locus_tag="ACHDOB_000444"
     CDS             complement(14481..15839)
                     /locus_tag="ACHDOB_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HFN3325385.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSILMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWILFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELSHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPIVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(15938..17137)
                     /locus_tag="ACHDOB_000445"
     CDS             complement(15938..17137)
                     /locus_tag="ACHDOB_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HFN3325386.1"
                     /translation="MFSSFFASKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSDFY
                     NVLQKPKIELLDSNSTQKIEENLENNTTLIQEANQRAEQNFQKANFINKGALYYYQNL
                     LEYFFNSRAMIEKPNYSANDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREAMT
                     FSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSLSD
                     VVSKALFANLSENSSFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQKA
                     EAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMIVI
                     VPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKEFE
                     KNISYKS"
     gene            17330..17446
                     /locus_tag="ACHDOB_000446"
     CDS             17330..17446
                     /locus_tag="ACHDOB_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325387.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQ"
     gene            17457..18461
                     /locus_tag="ACHDOB_000447"
     CDS             17457..18461
                     /locus_tag="ACHDOB_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HFN3325388.1"
                     /translation="MKKIFFMFLTAFSFLGASELNIYSARHYDADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLDNLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            18461..20077
                     /locus_tag="ACHDOB_000448"
     CDS             18461..20077
                     /locus_tag="ACHDOB_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3325389.1"
                     /translation="MYKTLKYYKLGAILLALFLVLPIFGIFAELFYILFQNFNTSDLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISVGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRIDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALVTALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKIFHMSLLGNSLLVLVFAYVIRFLASAIYSLEGGYNKIHLNIDEASLNLRTSYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            20061..20969
                     /locus_tag="ACHDOB_000449"
     CDS             20061..20969
                     /locus_tag="ACHDOB_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325390.1"
                     /translation="MMLEIKNLSKNFGKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCKLLLLDEPFSNLDQNLKQDLRRE
                     LKKIIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEKKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            21005..22210
                     /locus_tag="ACHDOB_000450"
     CDS             21005..22210
                     /locus_tag="ACHDOB_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HFN3325391.1"
                     /translation="MKNLLIIGAGGVSRVATAKCAMNSDTFSKITLASRTKSKCDEIA
                     AFIKERLGVQIETAQIDADDSNAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YVDTANYEHPDLAKFEYKEQWARNDEFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVM
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(22238..22900)
                     /gene="sodB"
                     /locus_tag="ACHDOB_000451"
     CDS             complement(22238..22900)
                     /gene="sodB"
                     /locus_tag="ACHDOB_000451"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HFN3325392.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT         8304 a         3153 c         3818 g         7722 t
ORIGIN      
        1 taaaaataca aaatttaatt cttgaaaaaa ataaacaaaa catcagtcta caaggcaatt
       61 taaatattaa caactcttat caagcaaaat tacaagttat cagttcagat gagcctgatg
      121 aaatttttcc ttggacaaag gattatggag gtttaaatca atatttttta aaagaaaata
      181 ataacttttt tctaaattta tcttatgata gcttagccaa tcctcagcta aaaattaatg
      241 gtagtgaatt ttcaaatatg gatttaaatt aatgagccta gctttgacct ttcgccctga
      301 aaattttgat gatattttag gacaatatga gcttatagaa attttcaaaa aatttactgc
      361 tttacaaaaa cttcctcata gcattttttt tggaacagca ggttctggaa aaacaacttt
      421 tgctagagtt gtagcaaaag aatttggctt agatttttat gaatttgatg gaggaaattt
      481 taaactcgaa gaactaagaa aaattttaga caattataaa aatagtcttt ataagccttt
      541 aatttttatt gatgaaattc accgccttag caaaacccaa caagaaatgc ttttaattcc
      601 tatggaaaat taccgtttaa ttttaatcgg tgcaagtact gaaaatccct attttgtttt
      661 aagttctggc ataagaagtc gttccatgct ttttgaattt aaatctttag gggtaaagga
      721 acttgaaact ttactcttgc gtgtacaaga aaaaatgaaa tttagtattg ataaagaagc
      781 taaagatttt ctacttaaaa gtgctgatgc aagagctatg ctaaatttgc ttgaatttgt
      841 cttggtttta gatgaaaaac atatcagtct tgaaaatctt aaaaaacttc gcaacaccat
      901 aagtagcgaa ggtgttagtt caaaagatac acattatatt ttagcaagtg caatgataaa
      961 aagtttacgc ggaagtgaca ttgatgcagc tatttattat cttgcaagac ttattgatgc
     1021 aggagaaagt gcggatttta tcgctagacg tttggtgatt ttttcaagtg aagatgttgg
     1081 aaatgccgat ccaaatgctc taaatttagc agtttcgact ctagaagctg ttaaaaatat
     1141 aggttatcct gaagcaagaa ttatcctagc ccaatgcgta gtttatttag caagcacaat
     1201 caaatctaat gcaagctaca aagctatcaa tgaagcttta aactatgtaa aaaataatga
     1261 agctttagaa atacctaatt atcttaacaa caatcatcaa gaaaaacaaa actatcttta
     1321 tccgcatgat tttggtggct gggtagagca aaaatatctt agtaaaaatt taaaatttta
     1381 tcatagcaag ggcttaggag aagaagcaaa attgttagat aatttatata aattaaaaaa
     1441 ccataaagct taattttatt atttaaaatt tacaaaataa atgctaaaat caatatttta
     1501 ttttcaagga aaaagatgat taaaatagga atttatggcg ctaaaggacg catgggaaaa
     1561 cagattgaag aatgtttaaa aagcgaaaca caagcacaaa tttcgatact ttatgataag
     1621 ggtggaaatt tagaagagct ttttgaaaaa agtgatgtga ttattgattt ttcttcccca
     1681 agtggaactc atgagctttt aaattatgca agaactatgc ctaaaccttt ggtaataggt
     1741 acaacaggac ttgatgagaa aattttacat ttgatgcaaa gtgctagtga agtgatgccg
     1801 attttttatg cgaccaatat gtctttaggt gttgcagttt taaactatct tgctagcaaa
     1861 gcaagtcaaa tgttaaaaaa ttttgatata gaaattttag aaatgcatca tcgccataaa
     1921 aaagatgcac caagtggtac ggctatgact ttagcccaaa gtgtagcaaa agctagaaat
     1981 ttagaacttg aaaaagtaag agtaagtgga agagatggca tcataggtga aagaagcaaa
     2041 gatgagattg ctgtgatgag tttaaggggt ggcgatatag taggacgcca tacagtaggt
     2101 ttttatgaag atggtgagtt tttagaactt aatcataccg ctacttcaag ggcaactttt
     2161 gctaaaggtg cgattaaaat cgctatttgg cttagtaagc aagaagcaaa aatgtattca
     2221 attaatgatt ttttaggaat ttaaaatgtg tgcagttgta ggagttatca attcaaaaaa
     2281 tgctagcact tatgcgtatt atgcgctttt tgctatgcaa caccgtgggc aagaagcaag
     2341 tggtatcagt gtaagcaatg gtaaaaatat taagactatt aaagccaaag gtgaagtgag
     2401 tcaaattttt aatcctgata atctaaaaac tttagagggt gaaatcgcta tagggcataa
     2461 tcgctattct acagcaggaa attcaagttt aaatgacgct cagcccatag cagctacttc
     2521 agttttaggt gatattgctt tagcgcataa tggaaattta gtcaataaag aagaggtaag
     2581 atcaagactt attcaagatg gggctatttt tcaaaccaat atggacacag aaaatgttgt
     2641 ccatcttatc gcaagaagta agcaagaaag tctaaaagat agatttattg agagtttaaa
     2701 agaatgtata ggagcttatt gttttgtttt agcaagcaaa gataaacttt atgttgtaag
     2761 agatcctcat ggggtgcgtc ctttgtcttt agggcgttta aaagatggag gctatatagt
     2821 tgctagtgaa acttgtgctt ttgatcttat agaggctgaa tttattcgtg atgttaaacc
     2881 aggagaaatg cttattttta ctcagggaaa tgataaattt gaaagcatag aacttttttc
     2941 tcaaactcct agaatttgcg cttttgaata catttatttt gctagacctg atagcatagt
     3001 agaaggcaaa agcgtgtatg aagtgcgtaa aaaaatgggc gaagctttag ctaaaaaatt
     3061 tgcttataaa gcagactttg tcgtgcctgt gccagatagt ggagtaagtg cagctatagg
     3121 ttttgctcaa tatttacaaa tccctcttga aatggcaata gtaagaaatc attatgtagg
     3181 aagaactttt atagagccaa ctcaagagct tagaaattta aaagtaaaat taaagcttaa
     3241 tcctatgcgt aaagttttag aaggcaaaga aatagtagtc attgatgata gcttggtgcg
     3301 tggcactact tctaaaaaaa taatttcttt acttcgtgct gcaggagcga gcaaaatcca
     3361 tcttgccata gcttgtcctg aaatcaagtt tcctgatact tatggcatag atactccaac
     3421 ttttgaagaa cttatcagtg caaataaaaa tactgaagaa gtgcgtgaat atgtagaagc
     3481 cgatacgcta agttttttaa gtatagaaga attaactcaa agcataggcg atgaaagaaa
     3541 atattcttta atcagttttg atggagatta ttttattaaa taattttatt ttaaattagg
     3601 attaggcaag gttgcacttg cacttcctac atttatattt tgagttggtg gcaaaggagt
     3661 atttggtgta tcaatttgac ttaaaagctc taaagtttga ttaaattcaa agctttcttc
     3721 aggattttgg cctaagaatt tttgcataaa ttctttttta gaaatagctt catcaagttc
     3781 tttatcactt cctttctgat aagcaccgat gcgaagcaat acttcatttt cttttaaaag
     3841 cgagtttaaa cgcttaaatt ttcttgccca aagtttatgc tcaggactta taatgtcact
     3901 cattaccctt gaagcagagt tttgtatatt aataggagga taaattccaa agtctgttaa
     3961 ttcacgactt aaaacaatgt gtccatctaa gatagaacga ctttgatcgg cgattggatc
     4021 actcatatca tcgccatcca ccaaaacggt aaaaaaggcc gttatagtgc ctttaccttc
     4081 ttctttaccc gttctttcca tgagttgagg caaaagactt aaaacacttg gtggataacc
     4141 tttggttgta ggaggttctc caagagctag tcctatttct ctttgcgcca tagcaaaacg
     4201 tgttacacta tccatgataa aaagtacatc tttaccttgt tctttaaagt attctgccac
     4261 actcattgcg caaaaagcac cgtatttacg cattaaagca ctatcatcac ttgtagcaac
     4321 aataatcact gtatcatcga gctttccacc taaatttttt tgtataaatt caggaatttc
     4381 acgccccctt tctcctatga gtgccactac ctttatagga gctttggaat ttttaactat
     4441 cattcccata agagtggatt ttcctactcc gcttcctgca aaaataccaa gtttttgccc
     4501 tacaccacaa gttaaaagtg cgtctatggt tttaacaccc acgggaaaaa cttcttctat
     4561 aagccctctt ttcatcgcat caataggtgc acgcattata ggcatatatt tacttacttc
     4621 tatagctcct ttaccatctt ttggacgcat aaaaggatct actaccctgc ctaaaagttc
     4681 atcgctaacg cctatttgca tacctgcatc acttatgaaa gcacgatcgc ctattttaaa
     4741 accctctata aaagaaaaag ggcttaaata gctaaattgt tctttgattt ctacgaccat
     4801 agctagagtg tttaaatttt cattttcatt ggaaactagc ttcactatat ctccaacccc
     4861 tgttttaagc ccacgaattt ctatactcgt agcagaaatt tttgtaatct ctccaaaaat
     4921 agcacttaaa ttttctttgc caagtttgga gcgtagtttt tcaagattca ttaaaatctt
     4981 acctgtttag cagagtttat gagagaaaaa aattcttctc tagttttttc attttttaag
     5041 aaaattccac gcaaagctga agttgtagtg gtggaattag ctttttgtac tccacgcatt
     5101 tcaacacaca tatgtcttgc ttctatgact acgccaacac ctttggcatc gacattttcc
     5161 attaaagctt gtgcgatttg ttcggtaagt tgttcttgaa tttgaagtct tcttgcaaac
     5221 acctctacaa ggcgtggaat tttgcttaaa cccactactt ttttattagg aatataggct
     5281 acatgagcac gcccaaaaaa aggtaaaaga tgatgttcgc aaagactata aaattctata
     5341 tcacgcacta aaaccatttc attattagag ctttcaaata aagcgtcatt taaaatttct
     5401 ttgacatttt gtgtataacc actagtaaga aattcataag ctttaaaaac acgatttggt
     5461 gttttaatca gtccttcacg atttggattt tctcctataa tttcaagtat ggttttaaca
     5521 caatcttcaa attttttttg caaatttttc tccaaaaaat atttttatat tttaataata
     5581 atgtaatatt gcaattttat cataaattac tttaaaattt tatgcaagca ataaggaaaa
     5641 atttgctatc attgaaagca aattttattt tataaggaaa aaaactatgg aagtaaaggc
     5701 aaagcaacta gattctgtta atgcgactgc tagtgtaaaa attccttcag gaatgatcaa
     5761 aagtgaagta gaaaatttag caaaaaaagc ttctaaaagt gtaaaaatgg acggttttag
     5821 accaggaaaa gttcctgtaa gtgctgtact taaaagatat gaaagagaac tcactcaaga
     5881 tgcagaacaa aatcttttta aatccgctgt aaatagtgct ttacaagaac ttaaaaaaga
     5941 aagtaaagag cttgtaggtg agccatattt tgaaaaattt gatcgtaaag atggagaaat
     6001 tattgctgag ttaatacttt cttttaaacc tgaaattaaa cttgatggtt atgaaaaact
     6061 tatccctgaa tatcaaactc caaaagtaag taaaaaagaa attgatgaga aaaaagatga
     6121 acttttaaag cgttttgcta ctcctgaagc tataaaaaca aaaagagctt taaaagaagg
     6181 tgattttgca aaatttgatt ttgaaggttt tgtggatgat aaagcttttg aaggtggtaa
     6241 agctgaaaat tatgttttag aaattggttc taagcaattt attccaggtt ttgaagatgg
     6301 tatggtggga atgaaaatag gtgaagaaaa agatatcaaa gtaactttcc ctaaagaata
     6361 cggtgcggcg catttagcgg gtaaagatgc agtatttaaa gtaaaactac atgagattca
     6421 agagcttaaa attccagaac ttgatgatga aatgcttaaa aaacttttac caggagaaga
     6481 aaaagctagt gttgaagttt tagatgaaaa attaaaagag caaatcaaaa atgaaaaact
     6541 tttcaaactt gtaaatgatg aattaaaagg caaatttgca gatgctttga ttgaaaaata
     6601 taattttgat ttacctaaag gcatagtaga acaagaaact gatatgcaaa tgcgtgcggc
     6661 ttttaatact tttagcgaaa aagaaattga agagcttaaa gcaagtaaag aaaaatacca
     6721 agaaaaacgt gattctttta aagaagaagc gcaaaaaagt gtaaaactta cttttatcat
     6781 tgatgagctt gcaaaattgc gtaagattga agtaaatgat caagaattga ttcaagcgat
     6841 ttattttgaa gcatatcgct atggtatgaa tccaaaagag catttagaaa actataaaaa
     6901 acaaggagct ttacctgctg tgaaaatggc tttgattgaa gaaaaacttt ttaatgatat
     6961 ttttatgcca aaaacagaaa aatcggaaaa agcgagcaaa aaagagaaag aagataaata
     7021 atgtttattc cttatgttat tgaaaaatct agtcgtggtg aaagaagtta tgatatttat
     7081 tcacgtcttt taaaagatag aattattatg ttaagtggtg aaattcatga tgaacttgct
     7141 gcttctatcg tagcacaact tcttttttta gaagctgaag atcctacaaa agatatttat
     7201 ctttatatta attctccagg tggtgtaatt acaagtggtt ttagtattta tgatactatg
     7261 aactatatca aacctgatgt ttgtacgatt tgtataggac aagctgcttc gatgggagca
     7321 tttttgctta gttgtggcgc agaaggaaaa cgctttgctt tgcctaattc acgcattatg
     7381 attcatcaac ctttaggtgg agctagaggt caagccacag atattgaaat tcaagccaaa
     7441 gaaattttaa gacttaaaac tatacttaat gatattttgg caaaaaatac taagcaaaaa
     7501 gttgcaaaaa tagcaaaaga tacagaaaga gattttttca tgtcagcaca agaagctaaa
     7561 gaatatgggc tgattgataa ggttttggaa aaaagtttta aatgatttct ttggagatca
     7621 tttaaaacaa aggtttttta atggttagaa aaattatcac ttatcctaat cctagacttt
     7681 ttttaaactc tgaaattgta aataaatttg atacagaact tcacaccttg cttgatgata
     7741 tgtatgaaac tatgatagca agtaatggag taggtttagc ggctattcaa gtggatattc
     7801 ctttgcgtgt tttacttgta aatatttttg atgaaaatga tgaacaaaaa aaagaagatt
     7861 tgctagagat tatcaatcct gaaattattc ctttagatga agaaatgatc acttgtaccg
     7921 aagggtgttt gagtgtgcca gatttttttg aagaagtgaa acgctataat catatcttgc
     7981 ttaaatatca agatcgcttt ggagaattta aagaacttga agcaaaaggt tttttagctg
     8041 tggctattca acacgaaaat gatcatttga atggacattt atttatagaa aaaatttctt
     8101 ttgctaagcg tcaaaaattc gataaagaat ttaagaaaaa gaagaaaaat cataaaaaag
     8161 agaaatgaaa aaactaaagt gcataagctt tcatgaaggc ttagacatta tagaggtaga
     8221 atccactttt acaagaggtt tgccaaattt aagcatagta ggacttgcaa gtgtagcgat
     8281 taaggaaagt gtcgaacgca tcaaagccac acttttaagt tgtgattttg cttttcctgc
     8341 taaaaaaatt actatcaatc ttagtccttc aggcatccca aaaaagggat cgcattttga
     8401 tttggctatc gctttattaa tccttttgca aaatgaagaa ttagatgact tttttgtagt
     8461 aggagaatta ggacttgatg gaagtattaa aagcacaaat gagctttttt ctttgctttt
     8521 gtttctctct gctaaaatta aaaaagctaa aattgttgtt ccaaaaagta tagcacaaaa
     8581 agcttccatg ataccaaatt tagaggttta tggacttgaa aatttaaatg aagcaataga
     8641 gttttttaaa gaaaaaaatt atgaaaattt tcgtttttct cacaatcatc ctttattcac
     8701 aagcccttta caaatagaaa atgaaatttt tttacaaaat atggatttta aacttgattt
     8761 taaagatatc aaaggacagg aaaaagccaa aagagcttgt atgatagctg ctttaggtat
     8821 gcataatatc ttatttgaag gaagtccagg aagtggtaaa agtatgtgtg ctaaacgcct
     8881 tgtttatatc atgcctcctc aaagtttaag tgaagtttta atgcaaaatg cttatatgtc
     8941 tttagattca aaagattgtg aatttactaa aattcgtgct tttcgtcatc ctcatcatac
     9001 ttctacaaga gcaagtattt ttggcggagg aacaaaaaat gctagaattg gagaagtcgc
     9061 acttgcaaat ggtggagtat tgttttttga tgaatttcca cattttaaca agcaaatcat
     9121 agagagttta agagagcctt tagaggatca taaaattcat atttcaagag taaattctaa
     9181 aatcacttat gaaacaaaat ttagctttat agctgcccaa aatccttgtc cttgcggaaa
     9241 tttattttct aaaaatcttt cttgtgtttg tagtgaaaat gagattaaaa aatacaaaaa
     9301 tcacatttca gctcctatta tggataggat tgatctttat gtagctatgg atgagatcag
     9361 caaggatgat aaaacgagta taagttctaa agaaatgagt gaaaaaattt tacaagcttt
     9421 tatttttggt aaaaaacgag ggcaaaaaga atttaatggg aaattaaaag atgaagattt
     9481 aagtcgtttt tgtgtactag aaaaagatgc caaagatacg ctagatttag caatttcacg
     9541 ttataatctt tctttgcgat cgcttaataa aattttaaaa gtttcaagaa gtatagcgga
     9601 tttagaacaa agtcttaata ttaacaaaac ccatatttta gaagctttaa gctttagagc
     9661 aaggaattaa aatggaaaat aaaagtatag ctatctttat agatgcagaa aatatccctg
     9721 caaaatacgc taaaagtatt tttgatatcg cttcagatta cggagaggtt atcattaaac
     9781 gcatttatgg ggattggact caaaaaaata tacaaggttg gagagagcaa attgctgaat
     9841 attctttaat cgctatgcaa caatttaatt ttgcagccaa caaaaactca agcgatatgt
     9901 atttaatcac tgaaatcatg tccatatttt atgaaaaaaa catagatatt tttgttattg
     9961 tttcaagcga tagtgattat acttcactca ttcaaaaatt aagagaaaat aaaaaacaag
    10021 ttataggaat ggggcttgaa aagtctataa aatcctatgt aaatgctttt agtgaatttt
    10081 tttatttaga taaagatgag agtaaaaaag aagatatttt aagtaaggat tatttaagag
    10141 ctttaatcaa tatcaccgaa cagcttatcg atgaaaaagg gcgcgctgaa tacgcacaaa
    10201 tccgcactaa tatgaaccgc aaatactcgg attttcatcc gcaaaattat ggttttaaga
    10261 attttcgtgc tttgatccag aaatttttac ccaaaatgaa aaaatttgaa gaagaaagag
    10321 aaaaaaatat atattttttg gtgaaaaaag attatgaaag ctattattga taatataaaa
    10381 attttagaac aaaatgctat aaataaaggc ttagatgagc ttattttaat ggaaaatgca
    10441 ggattaaatt tagccaagct gattaaaaaa gaagctaaaa aaattcgcat tcaacgcaag
    10501 attaaaaaag taaaaatact ttttttatta ggtgggggta acaacgcttc agatggcttg
    10561 gtggctttaa gaaatttaaa acacgctaaa gcttataaaa taggctttaa agaaaatacg
    10621 ctttttaaaa aacaagagca aattttacaa aattatgctt ttaaattttg ccaaaaagaa
    10681 cctgatttta agaaatttca tattattatt gattgtattt taggcacagg ttcaaatcgt
    10741 tgtttagatg aaaaaacaag tttaatcatt caaaaagtta atcaaagcaa agctttaaaa
    10801 atagcttgtg atatacctac aaatttggga ttttatcctt gttttaaagc tgatattaca
    10861 ctttgcatgg gagctttaaa ggaaatttta cttgaagatt ttgctaagga atttgtagga
    10921 aggattaaaa tagccaattt aggcattagc tctaagaaat tttaccctaa ttctcaagct
    10981 tttttgcttg aaaaaaaaga tttaaaaact atagatagaa aaatcaacgc caataaagga
    11041 aattttggcc atatttatat agttgccaat gtaagtgctg gaactttagc aggacttgga
    11101 gccttaaatt ttggagcagg tcttgtttct ttagtagcac aaaaaagttt ctcgcctctt
    11161 ttgatgttaa aagaaaaaat tgaaaataat gcaagtgcta ttgctttagg tatggggctt
    11221 gaaaatttgg attttctaaa agatgaaatt ttgcaaaaca ctcctttgat cttggatgca
    11281 aactgctttt taagtgaagc tttgctttgg tatttaaaca gaaaagatgt tgttataacc
    11341 cctcatccaa aagaatttat aaaactttat aaaatgtgct ttgatgagaa tttagatata
    11401 gaaacattgc aaaaaaatcg ctttttctat gctagaaaat tttcacaaaa ttatgattgt
    11461 gttcttgttt taaaaggagc aaatcctatt attgtgcaaa aagaaaaatt atttgttgta
    11521 aatttaggaa atcaagcctt agctaaaggt gggagtggag atgttttaag tggaatgatt
    11581 gctgcacatt taggttttgg ttttagtgct ttagaagcag caaaaaatgc tactttagct
    11641 catggacttg ttgcaaaaaa atataaattt aataaaaata gctttgacgc tttaaaactt
    11701 atcaaaggat taaaatgctt gtaaaattag ctgtactttt tagtggaaat ggaagtaatt
    11761 tagaaaatat tttagaaaaa cttcataaaa aaaccatagg ggaaaatacc tatgaagtag
    11821 tactttgcct ttgtaataaa aaagatgctt ttggtataca aagggcaaaa aaatttggtc
    11881 ttgatactgt cattgttgat cataaggctt ataatactcg tgaagaattt gatacgattt
    11941 tggtacaaaa aatcaaagaa agtggagcaa atcttactgt attatcaggt tttatgagaa
    12001 ttttaagtcc tgtttttaca aaaaatatta aggcaattaa ccttcatcct tctttattac
    12061 ccctttttaa aggagcacat gcgattaaag aaagttatga aagtgatatg aaagtggctg
    12121 gtgtgagtgt gcattgggtc agtgaagaac ttgatggtgg aatgattata gctcaaaaag
    12181 cttttgaaaa aagaaatttg agttttgaag aatttgaaga aaaaattcat agcctagaac
    12241 atgaaatttt acccttaagt gtgattgaaa ttttttctta aagaattaaa ggtatttgct
    12301 ttaaaactat aaaatatcgc tttaaaaaat tttaaaattt tcaaggaaat ttatgtttga
    12361 atggatattt agtattgatg cttggattac tttagctact ttaagtgctc ttgaaattgt
    12421 actagggata gataatatca tttttttagc tattttagta agcaaactac cccctgaaca
    12481 tcgtgataaa ggacgtatct taggtttagc ttttgcaatg attacaagaa ttttacttct
    12541 tttatctctt ttttgggtga tgaaacttgt aacacctttg tttagtgtat tgggcaatga
    12601 aatttcagga agagatctag ttcttttact aggtgggctt ttcttgattg taaagtctat
    12661 taaagaaatt aaagagcaaa tttctcatca agaagaaagt caaagtcatt ttaaagcaag
    12721 caataaactt tggatagttg tagctgaaat tgctgtgatt gatatagtat tttcacttga
    12781 tagtgttatt accgcagtag gaattgctca agatgtaacc atcatgatta tcgctgttat
    12841 tatcgcagta gctgtgatgc tttttgcttc taaacctata gcagattttg ttgaaaaata
    12901 tccaagcatt aaaattttag ccttagcttt tttggtgtta ataggcgtag ttttagttgc
    12961 tgaaagtttt gatattcata ttgataaggc atatatttat accgctatgg cttttgcttt
    13021 agtggtgcaa attttaaata ttttagatca aagaaaggaa aaaaatggct aaagacgcta
    13081 atggaacaga acttaacgca ggtgatagcg tgagtgtgat aaaagatctt aaggttaaag
    13141 gtgcaagtac aactttaaaa cgtggaacta ctataaaaaa tattaagctc acttctaaag
    13201 aaggtgaaat tgaggctaga gtagataaat ttggcgttat tgttttaaaa actgaatttt
    13261 taaagaaaat ctaggcaaag aatgtgcgaa tcttacttgt tttaagaggg aattattacg
    13321 caggacaaga agaatttatc aaaaataata aacttcaaaa ttatacactt gatttaaatg
    13381 ctttgcgtct tttatcagga agcgttaaaa atatagtcag tgaatataaa attttaaatg
    13441 ttaaaaatga tgaagatttg agtaaaattt tactcaaact tctagaaatg cgtatgcaaa
    13501 aaggtgagtt ttgcatcata aatgcttaca atgaaacatt aaaaatttac aaagacttag
    13561 ctaaacaata tcgctataaa atgtatgtta ttgtttttga taactcttta aaacaatgtc
    13621 aagaaaaaaa tcttttagaa gctaaaaaaa atggatatat catcccttat gctcttttgg
    13681 aaaaaactca agatttactc aaaaaaaatc caaaaaaata cccaatttta gactcgagcg
    13741 actggaaaaa atgtctttac caaatgccaa atttaagcaa atataaaaaa attcatcata
    13801 taggagattt acaaggttgt tatagtgttt taaaagaata cattaaaaca atcaaagaag
    13861 atgaatttta tatatttttg ggagattata tcaacagagg tatagaaaat ggcaaagtaa
    13921 taaaatttct tttaaaaatt tgcgaaaaag aaaatgtatg cttattagaa ggaaatcacg
    13981 aaagacatct tataaaatgg gctaatggag aattgtcaaa ttccaaagaa tttaatgaaa
    14041 atactttaaa ggattttaga aaagaaaaac ttactccaag agatgctaga aaactctatc
    14101 ctcatctaaa agaatgttta tactacaaat tccaaaataa attcatattt tgttcacatg
    14161 gaggagtaaa ttttataccc tccaaacctg aaaaaataag ttttatacca agccatgatt
    14221 ttatttatgg tgtaggtgga tatgaagaca gtcaaaaaat agcaaatcaa ttttgtaatt
    14281 tcacctcgga caatctttat caaatctttg gacacagaaa taaagaaaaa cttcctatga
    14341 aaatagccaa aagagtattt ttatgcgagg gtaaaataga tgatggtgga tatttacgcg
    14401 tagttacact agataaaaaa ggttttgagt gtatagaaat taaaaaccaa atttacaaaa
    14461 agaaataagc ctaaagaggc ttattcttca tctttatttg tttttttaac caccttaaca
    14521 cgctctatag aattcccatc cattttttta acttcatagt aacaaagttc atcttcaatg
    14581 cgatctccta ctataggcaa gcgtcctaaa agattaaata catatccacc tatagtaact
    14641 tgttctaaat cctcatcata gtttattaca agcatttctt caacagtttc tatatcgcat
    14701 cgtccttgaa attcatagat attttcagca agttttttat agctgtcttc ttcatgctcg
    14761 cttttaattt cgccaataat ttcttccatg atatcttcca tggttaaaat tccagcagtt
    14821 ccaccatact catcaactac taatgcagta tgagagcgtt ctttattcat cattacaagt
    14881 acttttgaaa tactgatatt ttcaggaact aaaatcaaag gtttaacaaa agtatctaaa
    14941 ttttgacttt tatggcttaa ttcattttgt attatatctc gtatgtgtat catccctaaa
    15001 atagtatctt tagaaccgtc aatataagga aagcgagtat gtttatgttc acaaatgatt
    15061 tgcatatttt cttcgtaact tttttgttta tttagacaaa tcatatcttt tctaggagtc
    15121 ataatctctt tagcaacagt atctgaaaaa tcaacagcat tgcgtatgat ctctgtttca
    15181 aattcatcta aaactccacc tttttgactc tcacttgcta tgattttaat ttcttcttcg
    15241 ctatgagtta gctcgctttc tttagcaggt tttattccaa aaagtttcaa acttatagct
    15301 gctaaaaaat cgaaaatttt aatacaaggc aaaaagagta tccaaaacca atgaagaggt
    15361 ctagctataa ataaaaccgc tttatctgca actgcaatag ctatactttt tggcacaagt
    15421 tctcctaaaa ccacatgtaa aagagtaata atactaaaag caataataaa agctatagta
    15481 tggataataa cagtgctaaa accaagatta ataagcggaa tttctagcat ttttgcaata
    15541 gcaggctcac ctatccaacc aagagctaga gaacttaaag tgattcctaa ttgacaagca
    15601 ctaagataag tatcaagtct tgaagtaacc tccaaagctt tcttggcacc agcttttttt
    15661 tcttttacca tctcttcaag cttggaacga cgtactttaa caatactaaa ttcagacaaa
    15721 acaaaaaaac catttaaaaa cactagagca agtgcaacaa caaccataag tatagaatat
    15781 cctgcatcaa aagatgctgt agaagtttgg tttaaatcca aaacctgact ggggtccaat
    15841 gaagctcctt aagaaataaa atattattaa accttattat acacaattaa aagtaaattt
    15901 aatatttgaa ttttttcttg tattttataa gaaaaaacta agacttataa gaaatatttt
    15961 tctcaaattc ttttaaacgc ttatatatac ttctaagttg agtgatagtt gtccagtttg
    16021 tgataaaaac actaaaagag cttcgtactt gatcaaaagc attgttaatc tgcattacaa
    16081 taccaagtcc tatagctccg gcaaaaagcc ctggtgccat gattaaaaat ggcactataa
    16141 ctatcatttg ctcaaataaa atgagccaaa tattaaaata tccataatgt aaaaaaagtc
    16201 ttttatagtt aaatttaagc cctgtaaaaa gctctatcat agtctcattt ttagcgtatt
    16261 ctttgcgatt atcctcagca taaacaagct cttttctaaa agctgcttca gctttttgat
    16321 tgttatattc aagtccagga agcttaatac ctacaaacca cgacacaacc aagcctccta
    16381 aagaaatcaa aagtgcaata taaacaagca aaccatcaat gttttttaaa aaataaaaag
    16441 aagaattttc gcttaaattt gcaaataaag ctttactcac aacatcactt aaactccata
    16501 aaatcgggat aaatgctaca agggtcatca aagcttttat aaaactaagt cctaaactct
    16561 ctacgatttt agaaaaatta taagtatctt cttgaattct ttgcgaactt ccttctatat
    16621 tatcatcttt atttttccaa aattttaaat aagaaaaagt catagcctca cgccacttaa
    16681 aagcatagac gctagcaaaa tagatattaa tcgtagcgat taaaacataa ggaatagcaa
    16741 tagccaaaaa aactaaaatc aaagcataaa aatcatttgc tgaataattt ggcttttcaa
    16801 tcatagccct agagttgaaa aaatattcta ataaattttg ataataatac aatgcacctt
    16861 tattgataaa attagctttt tggaaatttt gttcagctct ttgattagcc tcttggatta
    16921 aagtggtatt attttcaaga ttttcttcta ttttttgcgt agaattagaa tccaaaagtt
    16981 ctatttttgg cttttgtaaa acattgtaaa aatcactata ccatgaattg attgcaacat
    17041 ttaagcttgt ttgtatatat aagaaaaata acagtaaaaa aagccccaaa taagcccata
    17101 aagcccattt tttacttgca aaaaatgaag aaaacatgct accacctttt aaaagaaaaa
    17161 ttttaatcaa ctttatttaa tcaagagttt attaaaaatc ataaatttat caacacatgt
    17221 gtcaaaaata aacctcttta ttctttaaag aaatataaaa atataaagat tacgtcatat
    17281 ttacttttta atattaatat ttcttatcaa aatatctaaa aaggaattaa tgtctatgaa
    17341 aaaaataatt ttatttttac tatgcgttgg ctttgctttt gcttgctctg aacattctca
    17401 tactgatttt aaagatctta ataaaaccga gtataattct caataaagga taaaatatga
    17461 aaaaaatctt ctttatgttt ttaacagctt tttcattttt aggtgctagt gagcttaata
    17521 tttactcagc aagacattat gatgctgatt ttgaaatcat caaaaaattc gaagaaaaaa
    17581 caggcattaa ggttaatcat actcaagcca aagcttcaga acttattaaa aggctttctc
    17641 ttgaaggaag taattctcct gctgatattt tcatcacagc tgatatttca aatcttacag
    17701 aagctaaaaa tttaggactt ttatcccctg tttcatcaaa atatttagaa gaatttatac
    17761 ctgctcattt aagggataag gataaggaat ggtttgcgat cacaaaaaga gcaagaatta
    17821 ttgcttataa taaaaacgca aatattgaca ttagcaaaat gaaaaattat gaagatttag
    17881 caaaagctga atttaaagga gaaattgtta tgagaagtgc tacagctcct tatagcaaaa
    17941 ctcttttagc atctattata gctaatgacg gaaataaaga ggctaaagca tgggctaaag
    18001 gtgtgcttga caatcttgcg acaaatccaa agggtggaga tagagatcaa gccagacaag
    18061 tatttgcagg cgaagctaaa tttgcagtta tgaatactta ttatataggg cttttaaaga
    18121 attctaaaaa tccaaaagat gtagaagtgg ggaattcttt gggtattatt tttcctaatc
    18181 aagacaatag aggaacgcat attaacatta gcggtattgc tatgacaaaa tcaagtaaaa
    18241 atcaagatgc ggctaaaaaa tttatggaat ttatgttaag tcctgaaatt caaaaaattc
    18301 ttactgatag taattatgaa tttcctataa gaaatgatgt agaattaagc caaacggtaa
    18361 aagattttgg aactttcaaa gaagatcaaa ttcctgtgag taagatagca gaaaatatta
    18421 aagaagctgt taaaatttac gatgaagtcg gttttagata atgtataaaa ccctaaaata
    18481 ctataaactc ggggcaattt tacttgccct ttttcttgtt ttgcctattt ttggtatttt
    18541 tgctgaactt ttttatattt tatttcaaaa ttttaataca agtgatttaa cccaattttc
    18601 atctattaaa gaaaatttga gtcatttttt tgattattta tttttaaaat tcatcaaaga
    18661 tacttttata attagcgtgg gagtattgtg tttaagcttg attttgggtg tgagttctgc
    18721 ttatttgatc gcaaattatg atttttattt ctgtaaaatt ttagaaaaat tactcatttt
    18781 acccttggcc atacctgctt atattttagc ctttgtttat gtgggaatta tggattttca
    18841 aggatttttt catgaaaatt ttggctttag gatagatttt ttcaatcatt atggtgttat
    18901 ttttgttttg gctatttctt tatatcctta tatttattta tttgctaaaa cagcttttaa
    18961 aagtgaagct aaagaggctt atgaagtagc taaaatcatg aaatattccg aatttagaat
    19021 ttttacacgc gtggcacttt tgagtgcaag acctgccatt ttttctggag ctttattggt
    19081 tttaatggaa actttgagtg attatggtgc aagtgcttat ttgggagtag atactttttc
    19141 ggctggaatt tttaaactct ggtatgattt gaatgattct tattcttcta gtgttttatc
    19201 gggtatttta atgctttttg tatttttgat tatgtatgtg gattattatt ataaaaataa
    19261 acatcattat agttttaatc aaaatttagc tctttttatc aaaaaaagaa aattaaatcc
    19321 tattaaacaa attctatcct gtatttattg ttttatgatt gcttttgtag gttttatttt
    19381 accttttatt tggctagttt attgggggtt aaaagatcat aagctttttg aatcacaatt
    19441 ttatattatc agttttcaaa ctataatctt agctttagtc actgctttaa ttaccacttt
    19501 tttagcttat tttttgatgt ttagttctag gatagttaaa aatcattttt ttaatttatt
    19561 tattttaaaa ataagttctt tgggttattc tatacctgct gctgctttag ggattagcat
    19621 tatagtgctt tttgtatttt tggataaaat ttttcatatg agtttattag gaaattcttt
    19681 acttgttctt gtttttgctt atgtaattcg ttttttagcg agtgcaattt attctttaga
    19741 aggaggttat aataaaattc atctaaatat tgatgaggca agtttaaatt taagaacgag
    19801 ttattttatt ttatttttta aaattcacac acctttaatg aaacattttt tatttttggc
    19861 ttttattatt gtttttattg atacgattaa agaacttcct ttaagtagaa ttttagcgcc
    19921 ttttggcttt gaaactttaa gtgttaaagc tttctggttt gcaagtgatg aaagaattta
    19981 tgatgcagct ttgccttcct tgtttatcgt ttttctttct ttaatggttg ttgtttggat
    20041 ggataaaatc acaaggaaag atgatgttag aaattaaaaa tttatctaaa aattttggaa
    20101 aaatacaagc tttagaaaat atcaatcttc atgtcaaaga aggagaattt ttaagcattt
    20161 taggaggtag tggaagcgga aaaagcacgc ttttaaggat tattgctaag cttgaacaag
    20221 ctagttctta tgatttgttt tcttgcaaag gtgaagtggc tttgatgttt caaaattatg
    20281 ctttatttcc tcatttaaat gttgagaaaa acatactttt tgcactttac gataaaaaag
    20341 ataaaaatca aattttaaat catttgctta aaacttttga aattgaagat ttaagatata
    20401 aaaaaatcga tgaaatttca ggagggcaag cgcaaagagt ggcttttgct agagctatag
    20461 caagaggatg taagcttttg cttttagatg aacctttttc taatttggat caaaatttaa
    20521 aacaggattt aagaagagaa ttgaaaaaaa taatagaaaa tcaaggcatt acggctatta
    20581 tggtaactca tgatattgaa gatgcttatt gtatgtctga tcaaatcgct tttttagaaa
    20641 aaggaaaaat tttagctcat gcaaatccta aagagcttta ttttaagcct gattttaaaa
    20701 gtgcgcaaat tttacctgat ttaaatatca tagaaaaaaa acttgattta gaagatgaat
    20761 tttttgcttg gatagcttca aaaaattata tttttggtta tgcagaactt aaaataggaa
    20821 atcgctttga ggctaaaatt ttacaaaaag aatttttagg ggctttttat agacttaagt
    20881 taagatataa aaatatagaa ttttttatgt tattaagctc aaattataac ttagaagaaa
    20941 aaataaattt tgatattatc aatttttagc taaaattcct aaaaatcttt taaggacaaa
    21001 tttcatgaaa aatcttttaa tcataggcgc aggtggggta agtcgtgtgg ctactgcaaa
    21061 atgcgcaatg aattctgata cttttagcaa aatcacttta gctagtagaa caaaaagcaa
    21121 atgtgatgaa atcgctgctt ttatcaaaga gcgtttaggg gttcaaattg aaacggcgca
    21181 aattgatgct gatgatagca atgcggttgt agaacttatc aagaaaacag gagcgcaaat
    21241 tttactcaat gttgctttgc cttatcaaga tttgagttta atggatgctt gtataaaagc
    21301 agggattgat tatgtagata cggcaaatta cgagcatcct gatttagcta aatttgaata
    21361 caaagagcaa tgggcgagaa atgacgagtt taaacaagca ggaattttag gacttttagg
    21421 aagtggattt gatcctggtg taactaatgt tttttgtgct tatgcacagc aaaatttatt
    21481 tgatgaaatt tcttatatag atattttaga ttgcaatgca ggtgatcatg gctatgcttt
    21541 tgcgaccaat ttcaaccctg aaatcaatct acgtgaggtt tctgctaaag ggcgttattg
    21601 ggaaaatggc aagtggatag aaacgcagcc gatggaaata aaaatggagt gggattatcc
    21661 agaagtaggc gtaaaagata gctatttgct ttatcatgaa gaacttgaaa gcttggtaaa
    21721 aaatatcaaa ggtttaaaaa gaatacgctt ttttatgacc tttggacaaa gttatttaac
    21781 tcatatgaaa tgccttgaaa atgttggaat gctagggatt aaacctgtga tgcaccaagg
    21841 aaaagaaatc attcctatag aatttttaaa aaccttgctt cctgatcctg cgagtttggg
    21901 gccacgcact aaaggttata ccaatatagg ttgtgtgatt cgtggtaaaa aagatggaaa
    21961 agacaagcaa gtttatattt ataatgtttg caatcatgaa gaatgttaca aagaaactgg
    22021 cgcacaagct gtgagctata ctacaggtgt tcctgctatg ataggtacga aattaatcgc
    22081 taaaggaatt tggcaaggaa aaggcgtgtt taatatggaa gaatttgacg ctaagccttt
    22141 tatggaagag ctgaattctc aaggacttcc ttggaagatt atcgaaatga ctccgagttt
    22201 aggagagtaa aaaaggcatc gttttgatgc ctttaaatta ttttacaggg tgaagttcat
    22261 ttgcataaaa gctaactgat cccatgcctt cttttaaagc ccattcgtaa gcttttgcaa
    22321 caaattccca attaatatga gcatagaatt tctctaaata agcagggcgt gcattacgat
    22381 gatctacata ataagcatgt tcccaaacat ctacaacaag caaaggaact ttatcttcag
    22441 taattggtgt agctgcgttt gaagtaccta caaattctag tttttgattt ttagtattat
    22501 aaactaacca aaaccatcct gaaccaaaaa ctcctgtagc acctttgatg aattcagctt
    22561 tgaaattttc taaagatcca aattcttttt ctagtgccgc ttgtaaatta gcatctatac
    22621 tttgacatga accgccacag ccacagcctg tacttggctt aatgcaatca aaataaaaat
    22681 catgattata aacttgagct gcgttattaa atacgccccc atttgaagtt ttgataatac
    22741 ttacaagatc tttacctgca aattcagtat ctttaataag attatttaga tttgtaacat
    22801 aagtattgtg atgttttcca tgatgatagc taaaagtttc agcactcaaa aaatcaccaa
    22861 aagcattggt atcataaggt aattttctta attcaaacat aatttctcct ttatttttag
    22921 tttgatattg aaaatattac cataataata ttaaaaagag taaaaatatc ttaaaagctt
    22981 agtgggtaaa atttcta
//
LOCUS       DAZAND010000015        21876 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.015, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000015 DAZAND010000000
VERSION     DAZAND010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21876
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.015"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..106)
                     /locus_tag="ACHDOB_000452"
     CDS             complement(<1..106)
                     /locus_tag="ACHDOB_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325393.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKINILMGA"
     gene            complement(108..794)
                     /gene="tupB"
                     /locus_tag="ACHDOB_000453"
     CDS             complement(108..794)
                     /gene="tupB"
                     /locus_tag="ACHDOB_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1901238 - ABC-type tungstate transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tungstate ABC transporter permease TupB"
                     /protein_id="HFN3325394.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFDFKFKRFIKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            873..1682
                     /gene="tupA"
                     /locus_tag="ACHDOB_000454"
     CDS             873..1682
                     /gene="tupA"
                     /locus_tag="ACHDOB_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1901238 - ABC-type tungstate transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tungstate ABC transporter substrate-binding
                     protein TupA"
                     /protein_id="HFN3325395.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGNPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            1824..2591
                     /locus_tag="ACHDOB_000455"
     CDS             1824..2591
                     /locus_tag="ACHDOB_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HFN3325396.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDKTLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNIKALEFVKKIKENLEKEQIQICALENFI"
     gene            2601..3341
                     /gene="pxpB"
                     /locus_tag="ACHDOB_000456"
     CDS             2601..3341
                     /gene="pxpB"
                     /locus_tag="ACHDOB_000456"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HFN3325397.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCILSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            3322..4287
                     /locus_tag="ACHDOB_000457"
     CDS             3322..4287
                     /locus_tag="ACHDOB_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HFN3325398.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGVELCLKGGKYEFLDGNYFVLSGAEFEAKLNNQKIKTYKVYKANKGDILE
                     LGLAKIGFRGYLCVAGGFEIKSFLNSKSSDAKMGVGFFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSHKEPIIRVILGTNEDAFTQKGIDTFLNTSYKVGSKSDRMAIYAE
                     SSKSIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIGTVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(4284..5180)
                     /locus_tag="ACHDOB_000458"
     CDS             complement(4284..5180)
                     /locus_tag="ACHDOB_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFN3325399.1"
                     /translation="MTRTKYLYILLVLAMFLWGSSWPTSKILSAYADTSVITFWRFFF
                     VLLGSLMVLGFLRIPLSLEKSILKWVLIAGILNGLYTFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAILFQKDKKSTHKIIKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALIAVFNHKAKGVHPLAINFYINLISVLMFSWVLFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(5213..5791)
                     /locus_tag="ACHDOB_000459"
     CDS             complement(5213..5791)
                     /locus_tag="ACHDOB_000459"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFN3325400.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQRYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            5891..6232
                     /locus_tag="ACHDOB_000460"
     CDS             5891..6232
                     /locus_tag="ACHDOB_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002921808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HFN3325401.1"
                     /translation="MTKENSQCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMCK
                     WGEKDKKEKNA"
     gene            6225..6674
                     /locus_tag="ACHDOB_000461"
     CDS             6225..6674
                     /locus_tag="ACHDOB_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HFN3325402.1"
                     /translation="MLELIGELSLQNYMGEWLEMARKPAFFQKSCLNSKAKYELKYKN
                     GVPYVEIENFCSKENEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFIDSEYK
                     VAIVGSPDKKYLWILARNIIDEKSIKELLDIAKQRGFSVSDVIFDKY"
     gene            complement(6676..7752)
                     /locus_tag="ACHDOB_000462"
     CDS             complement(6676..7752)
                     /locus_tag="ACHDOB_000462"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HFN3325403.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAICVPKNA
                     PMHKVAPLLCAGITTYSPLKFSKIKEGSSVAIAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSTDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPVEDKVNIGINELVHKAGKKVYGSLIGGIAETQEMLDFSLKHEIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            7883..10192
                     /gene="hsdR"
                     /locus_tag="ACHDOB_000463"
     CDS             7883..10192
                     /gene="hsdR"
                     /locus_tag="ACHDOB_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0015666 - restriction
                     endodeoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EcoAI/FtnUII family type I restriction enzme
                     subunit R"
                     /protein_id="HFN3325404.1"
                     /translation="MQNLYSEDDTRVKFIDAKLYDSSWNEENIKRNYYFTDGRKLLGG
                     KRAQRKFADYLLRYEGNNLAIIEAKKFSKDPLDGLSQGIEYAKILNVPFVYSSNGEKI
                     YEYDIRSHSGKYIDKFPSPKELFDRIYGNVKEWQYRLLTQNVMYIPQKELRYYQKIAI
                     DKVIEAIINNKNRILLTLATGTGKTTIAFNLCYRLLEARWNKENKDQKPKILFLCDRV
                     SLRDQALGEFNPIESDCKAISAEEIKKNDGKIITNANVFFGIYQSLAANSKEQENTQE
                     EQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEEN
                     IDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGELEKGFY
                     KQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCANQAHANEVKRAIDKYKSVKRD
                     DYCVRVTSDEGKIGLDYLKQFQDNDKSFPVILTSSKMLTTGVDAKNVRNIVLLANIGS
                     MVEFKQIIGRGTRVYEGKDFFTILDFVGATKLFYDPKWDGEKIKELKEQNKQEKITKE
                     QIKQTKEESKEKKSVTIHLKGTKLKVLDITTSYVGAQGKPLSTKEFLEFLIGKLGEYY
                     DDEAKLREIWSDQKNRERFLKALANDGVDEDALKDLRKIFQKDCDIYDVLAHLSFNAE
                     IKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLNRYQEYGIKDFDDGLKPLIELSSLG
                     NVKELADEFGGLEILKQSFDDLQREIYAR"
     gene            10282..11604
                     /locus_tag="ACHDOB_000464"
     CDS             10282..11604
                     /locus_tag="ACHDOB_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HFN3325405.1"
                     /translation="MLIEFRVENFLSIQDEQILSMMASKDNTFFDSHTNGDKKLALLK
                     SSVIYGANASGKSNIVKALQTMKTIVISSANTQRGDKLPITPFLLGDEDDKPTKFEII
                     FIQNDTKYQYGFILNSEKILEEWLLTFDENNTEQNWFERIYNKKEGRYNYSFGDQFLA
                     DEIYKQLWENSTRDNALFLSVAIQLNNEQLKPVFDFFNLKLQIANSNGWGNGKSITIN
                     EYKKDKELVNSFFKIADLDIEGVEIKTSDIDENSLPSNLQNIPQELKEKIIQEVKNIQ
                     NLKNVKILEDISFIHLSQKNQIKFLNFNDESDGTRKFFNIAGIWIDSLKKGNILIIDE
                     LNTHLHPLMTKFLVNLFHNEDLNKSNAQLIFTTHDTSILNQDIFRRDQIWFCEKQNKA
                     TKLYPLSDFEESEERRDKTNLENDYLLGRFGALPYFKEILSSWSDNGN"
     gene            11594..12226
                     /locus_tag="ACHDOB_000465"
     CDS             11594..12226
                     /locus_tag="ACHDOB_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RloB family protein"
                     /protein_id="HFN3325406.1"
                     /translation="MGTDDLRKKRNTKTRDREAKRKKNEIILIVCEGEKTEKNYLNQL
                     KDFFRLSNVSINIISSKKPNPSQIVEFTKEKNKNYSYNKVYCVFDKDTHSDFDKARQE
                     CEKYKFEAITSNPCFEFWILLHFTYTTKSFSTNSPCNELIESDLKKHIKDYKKDYNFT
                     SIIKQNLSTAIANAQKANKEAEKNNYTSSYTFMDKLALKFQELNSARINQ"
     gene            12223..13434
                     /locus_tag="ACHDOB_000466"
     CDS             12223..13434
                     /locus_tag="ACHDOB_000466"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HFN3325407.1"
                     /translation="MTNLPQGWEVKTLSEIGEIVTGSTPSKSNLDFYGKDYPFFKPSD
                     FEQGYFLENAGDNLSKLGFGKARQLPPKTILVVCIGSLGKVALTKVIGSCNQQINAII
                     PHKNIISEYIYYYCISSKFQSILFSKAPQTTLAILNKTEFSKLEIIYPKDIKEQERIV
                     GILDFAFSKIDENIKKAKENLANIDELMQSALQKAFNPLNDNTKENYQLPQSWEWKSL
                     GDTSNYGKTSQVKPSQLKGNDWILELEDIEKESGVLLQKVLFQDRQSKSNKIKFNKGD
                     ILFGTLRPYLKKVIIADDNGACSSEIMPFSTGNSITNHFIYYYLFANFLHDRISSLTY
                     GARMPRLGTKDGKSLQIPLPPLQEQEQIAEHLDFVFEKAKALKELYTKELKDYEELKQ
                     SLLDKAFKGEL"
     gene            13579..15063
                     /locus_tag="ACHDOB_000467"
     CDS             13579..15063
                     /locus_tag="ACHDOB_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HFN3325408.1"
                     /translation="MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNL
                     KDLAFLDGKDYKSILEEKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKN
                     FKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKEDEVFALGEVYEK
                     LLKDMGSDGGNSGEFYTPRPLIKTMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYK
                     DRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK
                     KITDITEKDKYEVILANPPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCA
                     IIVPEGVLFQNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKC
                     ICEGDGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY
                     DLSAKNPNVKEEKILRTSEEILNSLEENLKTQQEYLNELKSILK"
     gene            complement(15141..15896)
                     /locus_tag="ACHDOB_000468"
     CDS             complement(15141..15896)
                     /locus_tag="ACHDOB_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HFN3325409.1"
                     /translation="MQLRQKAREIFEKFFGKVEEKLLFTSDKEFFTNHINFTFGESFV
                     KANLDTQKYFLITLASTLAVGGKIEFKALLQGAIKNDISPIVIKEVIYQATPYVGFAR
                     VCDFLSLCNKVFKKLNIALVLTPQGTTTQENRKIKGREIQNAIFSEANITKMIETTPE
                     DKAFINDFLSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLENQVKAHIQGNLNMEQ
                     SRKDLLNIIAALIPYIGYPKALNALNLLDDIKK"
     gene            complement(16004..16423)
                     /locus_tag="ACHDOB_000469"
     CDS             complement(16004..16423)
                     /locus_tag="ACHDOB_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HFN3325410.1"
                     /translation="MQELEKAGIHGSFKGDSKFFSKNVKVSMMFKSNEWRNFSGALVE
                     FEASARSAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNT
                     SSGTHIALTGEKEGKNVEWLELVSDEEYENALKEARE"
     gene            complement(16481..17671)
                     /locus_tag="ACHDOB_000470"
     CDS             complement(16481..17671)
                     /locus_tag="ACHDOB_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3325411.1"
                     /translation="MQALNQEKFNSLSDIKIILVLCLGVFGILSTELGMMGIIPIVSQ
                     NFSVSISDAGWSVSIFALVITFCAPIVPLLCANFNPKKLMLICLAVFILSSLTSAFVS
                     EFWQLLILRAIPAFFHPIYIALALSMVANLVEDKKEIPKATAKIFAAVSAGMVLGVPM
                     TSYFGGNFSFKMAMLFFVFLNTLSFIATLFFVPDFKKVNSVKISKQLLILRYPLLWIS
                     ILCVICINAGIWGFYSYFSDFLHSVGKMNFTLISIVLAIYGFSNIIGNYIAGKTLVKN
                     ANFTLILTPLIMIGFYILLFSFYSEIILIIFAFILGILAGVMNNGTHFMISYPFPKAA
                     NFSNGLFISVANIGLSTGTAICGLVISLSDTRYIIVNTIVLLILGIIMIFVRSRIEKM
                     KLRF"
     gene            17820..18725
                     /locus_tag="ACHDOB_000471"
     CDS             17820..18725
                     /locus_tag="ACHDOB_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HFN3325412.1"
                     /translation="MQVFFSTFKEFLYLFVELSVLFIGINILVAFLNAKYSNFFEKHL
                     KQDNFQTRLKAIFFGSLTPFCSCSSIPLLNAFLKAKVPLSVCMAYLITSPLINPIIIV
                     VFIVSFGIKISFIYIGFLYAIILFISFLLSKFDTSKFLNNDFLENEFNEKSSCCSTKK
                     CCSSKTHINLKQICIDSLKEYKKILPYALAGTFIGALIHGVFPSNFFEIYLKDYGILG
                     VFIAAFIGVLLYMNCTAMIPVALVLTQTGIPLGIMMSFLIAGSGCSLPELILLKRNFK
                     TSFLILFALLIILIAILFGILMFFI"
     gene            18735..19052
                     /locus_tag="ACHDOB_000472"
     CDS             18735..19052
                     /locus_tag="ACHDOB_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR/SmtB family transcription factor"
                     /protein_id="HFN3325413.1"
                     /translation="MQKFLTIISAINDESRVLILHHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVKRKGTWAYYGINNELLKLHSDLFENIKNLDIDNIVLEQNTCE
                     NDK"
     gene            19049..19471
                     /locus_tag="ACHDOB_000473"
     CDS             19049..19471
                     /locus_tag="ACHDOB_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphatase family protein"
                     /protein_id="HFN3325414.1"
                     /translation="MKLAFICIHNSCRSQMAEALARHKAEKMGIDIEVFSAGSDTSKG
                     VNSQAIRLMREIYQIDMKKHYSKLIDSLPQNLDIVVSMGCGVACPSLKSRYYFDFGLK
                     DPSGSYDDEFRKIIQILDYKITALLQAIKTNSLKDFTC"
     gene            19465..20508
                     /gene="acr3"
                     /locus_tag="ACHDOB_000474"
     CDS             19465..20508
                     /gene="acr3"
                     /locus_tag="ACHDOB_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite efflux transporter Acr3"
                     /protein_id="HFN3325415.1"
                     /translation="MLGFIDRFLTLWIFLAIFLGLILGIIFPNIALFWNLFEYKSVNV
                     VLTLCLILMMYPPLAKVDYAKLSKVFDSKKVILLSMILNWFIGPLLMFILAFIFLKDE
                     PLYMQGVIIIGLARCIAMVVVWSDLAKGDREYTSALVAMNSIFQILFFSTLAYIYLDF
                     LPKLLGQSTLATSLDIDFSALSKNVLIYLGIPFLMGFITRTLLLKYKSKRWYENTFLP
                     KISPITLITLLATIIIMCSYKANEVFHLPLEALKIAFVLTLYFIFMFFLTWFISKKNH
                     LSYPKTCSLCFSASGNNFELAIIICIATFGLHSEQAFASIIGPLVEVPVLILLVKWAL
                     GKSLNSKKMNQAS"
     gene            complement(20503..20931)
                     /locus_tag="ACHDOB_000475"
     CDS             complement(20503..20931)
                     /locus_tag="ACHDOB_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HFN3325416.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWAKWIEWLRISGMPIEQVKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKFCKES"
     gene            21009..>21876
                     /locus_tag="ACHDOB_000476"
     CDS             21009..>21876
                     /locus_tag="ACHDOB_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HFN3325417.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLHESALKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDITNLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTNLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKTHGDYNFFTYGLDGKERLGTCTKVFAYTACI
                     TESADIINKPIHK"
BASE COUNT         8140 a         3129 c         3428 g         7179 t
ORIGIN      
        1 tcgctcccat taagatgtta attttactcg tatcaagttt taaatttttg atttttaaaa
       61 cttctttgtt ttgatagttg aaaaaaagat tagaaatttc tatcatttta tgttcttttg
      121 agtttgtgtg tgatgaaatt taaacaaaag gcaatgagaa ttaaaaccaa agccaaagct
      181 ataccgctag caaattcgcc tttgttggtt tcaagtgaaa tagctgtggt tatggttcta
      241 gtgtcgtatt tgatatttcc acctactatc atcgctactc ctacttctgc tacaatgcgt
      301 ccataagcta gtgcaacgac gctaatcaaa gcaaagcgta attcataaat catggttaaa
      361 acaagtttta aaggacttag atgaaaagat tttataagta aaaaatgttt tttattcata
      421 ttttctatca aatttgaaaa aagcgcaatc actataggaa gcgctaaaat aaactgccct
      481 aaaattaaag cctttatagt aaaaagtagt ccaaattccc ctaaaggtcc tcgacttgaa
      541 atcaatgcat aaagtataag ccctactgca actgttggaa aagagaggct agtatctatg
      601 ataagtttta taaagcgttt gaatttaaaa tcaaaaaagc ctaagataaa tcccaaagga
      661 aaacctataa gcaaagccaa aactatagaa atacttgagc ttaaaagtgt agtttttata
      721 gccgaaatta cgctttcatc ggcattgaaa agtaaaaata aagcttgttt aaaaccatca
      781 aaaatataat ccaaaaatat cctttttaaa ataagtaatt ttagcataat tatgctaaaa
      841 tattttttta tgtaaattta taaggagaaa aaatgaaaaa aatcatttct ttagcccttg
      901 ctttagcttt aagtgcaagt gcagcagaac ttaaaatggc aaccacaaca agcactgaca
      961 atacaggact tttagatgcc ctaaagcctc tttatgaaaa agaaagtggc aataccttaa
     1021 aatgggttgc ggtaggaaca ggtgcagctt taaaaatggg tgaagattgc aatgctgatg
     1081 tgctttttgt gcattctcca aaggctgaaa aagaatttat gaaaaaaggt tttggtgtag
     1141 atagaactcc tgtgatgtat aatgatttta tcatcatcgc agataaatct ttagcttcta
     1201 aatttaaagg taaaaattta aaagaaagct tagaacttat caaaaatgaa aaactcactt
     1261 tcatctcaag aggtgataaa tcaggcactg ataataaaga aaaaagtctt tggaaaaatc
     1321 ttggcggtgt tcctgaaaaa caaagctggt atcaacaaag cggacaaggc atgttagcaa
     1381 gcattaaaat cgctgaagaa aaaaaaggtg tgattttaac cgatcgtggt acctatatca
     1441 aatatgaagc caatgaaaaa ggaaatccaa acttagtcat tgtaaatgaa ggcgatgata
     1501 gtcttaaaaa tttctattct gttatagcaa caaatcctaa gcattgtaaa aatgtaaatt
     1561 atacagaagc tagcaaattt attaaatggg taacaagtga taagacttta aattttattg
     1621 ctgattttaa acttcttaat aaacctttat ttgtgattga tgcaaaaacg agaaaagact
     1681 aaaaattaag caggttttaa cctgcttaaa atatcatttt ttacttattg taactttttt
     1741 atttattttt caaaactttt agcttattta aaattcttct ttagatataa taaaatcaat
     1801 aattaaatat acaaggtcaa ataatgttca aagtggattt aaatagtgat ttaggggaaa
     1861 gttttggcgc ctataaaatg ggaatggatg aagaaatttt aaaatttgta agctcagtaa
     1921 atgtcgcttg tggctttcat gcgggtgatc cttgtgtcat ggataaaacc ttaaatttag
     1981 ccaagcaaaa tggtgtttgc ataggagcac acccatctta tcctgatctt ttgggttttg
     2041 gaagacgcaa tatgcaaata agctttgaag aggctaaaaa ctatgccttg tatcaactag
     2101 gagctttatt tggctttgcc aaggcaaaag gtatgaaaat acagcatttt aaagcccatg
     2161 gtgcacttta taatatggca gctattgatg aaaatttagc cttagcactt tgtgaggcag
     2221 tggcgagttt tgatgaaaat attatttttc tagggcttag taattctgct atgaatgaag
     2281 cggctaagaa aaaaggttta agatatgcta atgaagtttt tgcagatcgt gcttataatg
     2341 atgatggcac tttagtttca agaaaattag aaggggcatt aatacacgat gaaaatttag
     2401 ctatcaaacg cgtgataaaa atgataaaag aaagcaaagt tacaagcata aatggcaaag
     2461 aaattgattt gaaagccgat agtatttgtg ttcatgggga taatataaaa gctttagaat
     2521 ttgttaaaaa aatcaaagaa aatttagaaa aagaacaaat tcaaatttgt gctttggaaa
     2581 attttatata ggttttagca atgtttagtg tgcattttag cggaagcaag gctttgcttt
     2641 tacgttttga gcaagaaatt tcacctcaaa tcaatgctta tgttttaagt acagaacaaa
     2701 ggatacaaaa agccctaaaa gaaggtgaaa tttatggtat tgatgagtta gtaagtgctt
     2761 atgcaagctt gcttatatat tttaatcctt gtatactttc tttaaattcc ttgcttgatt
     2821 ttttggaaaa aattaaaaag gatattaaac ttgcagaaca aaactcaagt ctttgtatag
     2881 aagttccact ttgttatgat gaagaatttg gactggattt agaatttgtg tgcaaacaca
     2941 atcaaatttc aaaagaagag cttatatctc ttcacactaa gccttattat cttgttttta
     3001 tgctaggttt tatggcaggt tttccttatc ttggaggttt agatgaaagg ctttttaccc
     3061 cacgcctttc aagccctaga gcaaaaatag aagctggaag tgtaggcata gccgataaac
     3121 aaacaggagt ttatcctata tcaagcccag ggggttggca aatcattgct agaacacctt
     3181 tggaattttt tgataaagaa gatgaaaaaa atcctactct tttaaaagcg ggtatgtttt
     3241 taaaatttaa agctatttca aaagatgaat ttttcgatat ccaagagcaa gttgctaaaa
     3301 aagtctatca aaaggaaatt tatgagtata aaaatcattg aagcatctat aaattcaagt
     3361 ttgcaagact ttggtagaaa aaaatttgct aaatttggca tagcaagaag tggggctatg
     3421 gatgaagatg ctttaagaat ggcaaatatc ttacttggaa acaaacaaga tgaagcagga
     3481 gttgaacttt gtttaaaagg tggaaaatac gaatttttag atgggaatta ttttgtttta
     3541 agtggggctg aatttgaggc aaagcttaat aatcaaaaaa tcaaaactta caaggtgtat
     3601 aaagcaaata aaggcgatat tttagagctt ggtttagcaa aaataggttt tcgtggatat
     3661 ttatgcgtag caggtggctt tgaaataaaa agctttttaa actctaaatc cagcgatgct
     3721 aaaatgggag ttggattttt tgaaggaaga gctttgcaaa aagatgatat tttaaatact
     3781 cataatactt ttataccttt taatttagaa gctagagaat gtgaaaatcc tctttttaaa
     3841 agccataaag agcctattat acgcgttatt ttaggaacaa atgaagatgc ttttactcaa
     3901 aaaggcatag atactttttt aaatactagc tataaagtag gttcaaaaag cgatagaatg
     3961 gcaatttatg cagaatctag caaaagtata gagcataaaa actcagcaga tatcatctca
     4021 gatcctgcag tttttggaag catacaagtg ccaaaaagtg gtattcctat cattttaatg
     4081 gcaggaagac aaagcacagg aggttataca aaaataggca cggttataga aaatgatcta
     4141 agcttactcg cacaagctaa gttaggttct agctttaaat ttcaaagcat tagcatgcaa
     4201 gaagccttag agctttataa acaaagagaa atgaaattta aagccatgga tcaaaaaatc
     4261 aatcttgatt ttgaaaattt aatctaagct tttttaccat aaatattgat aaaatatata
     4321 gcacctatag ccaaggcaca acctaacaag gtaagtgcat ttggcacctc atctagtata
     4381 aaataactac aaattaaagc actagcagga gtgattaaaa caaaagaatt tgccttaacg
     4441 ctccctaaaa tgtgaatccc ataataataa atactagtac ctataatagt tgataaaaaa
     4501 gcaacgacaa acatactgat ccaaaattta aattcaaaat gaaaaatttc ataacttttt
     4561 acatcaaaca atacccaaga aaacattaaa acagaaatga gattaatata aaagttaatc
     4621 gccaaagggt gaactccttt ggctttatga ttaaacactg ctatcaaagc ccaaataaaa
     4681 gaacaagtta aaaataaaat attaaatttg ccaaataaat cttctaaact ccctaaattt
     4741 aacaaacaaa atccagataa taaacctaaa aataagccta gaatttcact ctttatgatc
     4801 ttgtgagttg attttttatc tttttgaaat aatatcgcta tcataaatat caaataagaa
     4861 aaaataggaa tcatagttgt aaccaaaaca ccgccttttc cagctaaacc atgcttaatg
     4921 gcaataaaaa atacaaaagt ataaagccca tttaaaattc ctgctatcag cacccatttt
     4981 aaaatggatt tttcaaggct taaaggaatt cttaaaaagc ccaataccat caaagaacct
     5041 agcaaaacaa agaaaaaacg ccaaaaagta atcacagaag tatcagcata agctgataaa
     5101 atcttagaag taggccaaga tgagccccat aaaaacatag ctaaaacaag caagatatac
     5161 aaatactttg ttcgagtcaa tgttacacct tgaaattttt aagtcaaatt ttttaaaaaa
     5221 tttttttcaa gtgtagttca tactcgttta gatatttttc cacttgagga ttttttacca
     5281 catcattaca cataaaagtt ggtaaagctt tcatacctat aaattcatga gccttatgca
     5341 aatgccaata caccatatcc acaccctttc cttcaaaaaa ttcattttta tcattaaagg
     5401 cttcaagagg tgcattccaa gtgagagaaa acatgtattt tttaccatga tctaaaccac
     5461 cttttccata gtttttacta ggattttcat gagttcttcc atcattttta aaaagcactc
     5521 cagcacccaa accaaacact tcatcgatat attttttaac tatccaaggc tcgcccatcc
     5581 accaagctgg catttgatag atcacagcat cagcttttat aaatttttgt atctcttctt
     5641 taggatcata tctttgatct atatgagttt gatctacttc gtatcctaat gtttttaaaa
     5701 tttctaaagc atgattatgc aatgttaaat taagctgtcc ttttgaattt ccaaattctt
     5761 tagcgccatt aagcaagagt atatttttca tttttatcct tttttaaatt ttatgataca
     5821 attataactt agcataatat cattttcaat acagaaaata aagtaagata ctatactaaa
     5881 ggaatgttaa atgactaaag agaattctca gtgcaatttc gaagaatgcg gatttaacta
     5941 tactctagca ttaattaatg gaaaatataa aatgagtatt ttatactgct tatttcgcta
     6001 tgaaatcgtg cgttataatg aactcaaacg ctttttaagc tccatatctt ttaaaacttt
     6061 aaccaatacc ttaagagaac tagaaaatga tggtttaatt atcagaaaag aatacgctca
     6121 aattccaccc aaggtagaat atagcttatc caaacgcgga caaagtttaa ttcctatttt
     6181 acaagctatg tgcaaatggg gcgagaaaga caaaaaggaa aaaaatgctt gaattaattg
     6241 gcgaactttc tttgcaaaat tatatgggag aatggcttga aatggctaga aaacctgctt
     6301 tttttcaaaa atcttgccta aattcaaagg caaaatacga gcttaaatat aaaaatggcg
     6361 ttccttatgt agaaattgag aatttttgca gtaaagaaaa tgaaatttca agcataaaag
     6421 gcaaggcaaa aatcgtttca aataggcaat tagcagtgag atttaatatc tttatgaacc
     6481 tttttaataa ggtgaattat gaaatcattt ttattgatag cgagtataaa gttgccattg
     6541 tgggtagtcc tgataaaaaa tatctttgga ttttagcaag aaatataatt gatgaaaaaa
     6601 gcataaaaga gcttttagac atcgctaagc aaaggggatt tagcgttagc gatgtgattt
     6661 ttgataagta ttaaattatt cttttgtcat atcaataaca tagcgaaatt tagcctttcc
     6721 tgaggttaga ttttcataag ctttatcgat ttcttgtggt gtgataagct cggtttctgg
     6781 ataaatttcg tgttttaaag aaaaatcaag catttcttga gtttcagcaa taccgccaat
     6841 tagcgagcca taaacctttt tacctgcctt atgtacaagc tcgtttatgc ctatatttac
     6901 cttatcttcc acaggtggta agccaactat agccatttcg ccaccaaatt taagtaaatc
     6961 caaataaatt gcaggattat aaggcgttgg aatggttgag atgattaaat caaagcgttc
     7021 ttttacggcg tttttatcag tgcttgtgta aaatgagctt acacccatag ctaaagcatc
     7081 ggcttttttg ttttcatttc tagcaaaaac gctaaccttt gcacccattt taacagcgta
     7141 ttttacagcc atcataccaa gtccgccaaa gcctgctata gcaacgcttg agccttcttt
     7201 tatcttagaa aattttaaag gcgagtaagt ggtaatgccc gcacaaagca aaggcgcaac
     7261 cttatgcatt ggtgcatttt ttggcacaca aatggcaaat ttttcactta caactatgtt
     7321 gtttgagtag cccccataag tgttttcatt gccgtgaaat acatcgcaac tattgtaagt
     7381 aaagatggtt ttgccatttt cgcaaaactg ctcttgtgag cgtttgcaag catcgcactc
     7441 accgcatgaa tttaccatac aaccaacccc tgcgtaatct cctactttaa atttgctcac
     7501 atttttaccc acagcgataa cttctcctgc tatctcatgc ccaggtacgc aaggataagt
     7561 agcttctccc cactcgcttc ttgcggtgtg aatatcgcta tgacaaatac ctgcatatag
     7621 gattttaatc aaaatatcat tatcaccaat agcgtggcgg ctaaattcaa agggtgtgaa
     7681 tttcgcatct ttactaagca ttgcatagcc tttacttgcg atgcgattgt tttctaaaat
     7741 tttgtattgc attttcgctc cttttttgat tttttataat tataaaacat tagagtagct
     7801 ataagtcaag agtgaaaata atttttttaa aaactagtat aaatgctata attataaaat
     7861 ttaatttcac tttggggtaa aaatgcaaaa tttgtattca gaagatgata ctagagtaaa
     7921 atttatagat gcaaagcttt atgatagttc ttggaatgaa gaaaatataa aaagaaatta
     7981 ttattttaca gatggtagaa agcttttagg tggtaaaaga gcacaaagaa aatttgcaga
     8041 ttatttgctt agatatgaag gaaacaacct tgctataata gaagctaaaa aatttagcaa
     8101 agatccttta gatggtttat ctcaaggcat agaatatgca aaaattttaa atgtgccttt
     8161 tgtatatagt agcaatggag aaaaaattta tgaatacgat ataagaagtc atagtggtaa
     8221 atatatagat aaattcccaa gtcctaaaga gctttttgat aggatttatg gcaatgtcaa
     8281 agaatggcaa tacaggcttt taacccaaaa tgttatgtat attccgcaaa aagaattaag
     8341 gtattatcaa aaaatagcca tagacaaagt catagaagct attataaata acaaaaatag
     8401 aattttactc actcttgcta caggcacagg aaaaacaacc atagctttta atttgtgtta
     8461 tcgtttgtta gaggcaagat ggaataaaga aaacaaagat caaaagccta aaatactatt
     8521 tttatgtgat agagtgagct taagagatca agccttagga gaatttaatc ctatagaaag
     8581 tgattgtaag gcaattagtg ctgaagaaat aaagaaaaat gatggaaaaa tcataacaaa
     8641 tgcaaatgtt ttctttggaa tttatcaaag cttagccgca aattcaaaag aacaagaaaa
     8701 cacccaagaa gaacaagaga gcaaatttta tcttcaatac ccaaaagatt tttttgatct
     8761 tatcatcata gatgagtgcc acagaggtgg agcaaacgaa gaaggaagct ggagagctgt
     8821 gcttgagtat ttttcctatg caactcagct tggtttaacc gctactccaa aaaaagaaga
     8881 aaatatagac acttatgagt attttggtga gagtgtttat gattatagtc ttaaaagtgg
     8941 tattgaagat ggatttttaa ccccttataa agtcaaactc ataaaaacaa ctttgagtga
     9001 tggttatacc tataatcctg atgatttgat acaaggtgag cttgaaaaag gcttttataa
     9061 acaaagtgag tttgaaagaa atatcttttt accaaactat aatgacttta tcgctaagaa
     9121 aattttagag cttataaatc ccatggataa aactataatt ttttgtgcaa atcaagctca
     9181 tgcaaacgag gtaaaaagag ccatagataa atataaaagt gttaaaagag atgattattg
     9241 tgtaagagtt acgagtgatg aaggtaaaat agggcttgat tatctaaagc agtttcaaga
     9301 caatgataaa agctttcctg tcatacttac aagttctaaa atgcttacaa cgggcgtgga
     9361 tgctaagaat gtccgcaata tcgttttact agcaaatata ggctctatgg tggaatttaa
     9421 gcaaatcatc ggacgtggaa ctagagtata tgaaggtaaa gactttttta ccatacttga
     9481 ttttgttggc gctactaagc ttttttatga tccaaaatgg gatggtgaaa aaataaaaga
     9541 actaaaagag caaaacaaac aagaaaaaat tactaaagag caaataaaac aaacaaaaga
     9601 agaaagcaaa gaaaaaaaga gcgtcactat acacttaaaa ggcacaaagc ttaaggtttt
     9661 agatataact acaagctatg taggagcaca aggtaagcca cttagcacta aagaattttt
     9721 agaatttttg ataggaaagc ttggtgagta ttatgatgat gaagcaaaat tgcgtgaaat
     9781 ttggagtgat caaaaaaata gagaaagatt tttaaaagcc cttgcaaatg atggagtaga
     9841 tgaagatgct ttaaaagatc taagaaaaat ttttcaaaaa gattgtgata tatacgatgt
     9901 tttagcgcat ttaagcttta atgccgagat aaaaacaagg caagagcgtg ttttacaagt
     9961 agaaaatggt gagtttttaa aacgctttca aaaagaaaag gctataaaat ttatagaatt
    10021 tttactaaat agatatcaag aatacggcat aaaagatttt gatgatggct taaaaccgct
    10081 tatagagctt agttctttag gcaatgtaaa agaattggcc gatgaatttg gtggcttaga
    10141 aattctaaaa caaagttttg atgatttaca aagggagatt tatgcgaggt gatatgttta
    10201 aagataaatt tgagattttt agttaaaata atctctaaaa aataattatc tatatatttt
    10261 aagaaaaaag taggaaaaaa tatgcttata gaatttagag tagaaaattt tttatccatt
    10321 caagatgagc aaattttaag tatgatggca agcaaggata atactttttt tgattctcat
    10381 accaatggcg ataaaaaatt agctttgcta aaaagtagtg tgatttatgg ggcaaatgct
    10441 tctggaaaat cgaatattgt aaaagctttg caaactatga aaaccatcgt tatatcaagc
    10501 gcaaatacgc aaaggggaga taagttacct ataacacctt tcttgctagg ggatgaagat
    10561 gataaaccta caaaatttga aattattttt atacaaaatg acacaaagta tcaatatggc
    10621 tttattttaa attctgaaaa aattttagaa gaatggcttt taacttttga tgaaaataat
    10681 accgagcaaa attggtttga aagaatttat aataaaaaag aaggaagata taattattct
    10741 tttggggatc aatttttagc tgatgaaatt tataaacaac tatgggaaaa tagcactaga
    10801 gataatgcct tgtttttatc tgtggctatt caattaaata atgagcaatt aaaacctgta
    10861 tttgattttt ttaatcttaa actccaaata gcaaattcaa atggttgggg taatggaaaa
    10921 agtatcacga ttaatgaata taaaaaagac aaagaattag tcaatagttt ttttaaaata
    10981 gctgatttag atatagaagg tgtagagatt aaaacaagcg atattgatga aaactcatta
    11041 ccatcaaatc ttcaaaatat tccacaagaa ctcaaagaaa aaatcattca agaagttaaa
    11101 aatattcaaa atttaaaaaa tgtaaaaata ctagaagata tatcttttat acacttaagt
    11161 caaaaaaatc aaataaaatt tttaaatttt aacgatgaat cagatggcac aagaaaattt
    11221 tttaatatag caggtatttg gattgattct ttaaaaaaag gaaacatttt aataatagat
    11281 gagctaaata ctcacttaca ccctttaatg acaaaattct tagtaaatct ttttcataat
    11341 gaagatttaa acaaatcaaa tgctcagctt atttttacca ctcatgatac ttccatttta
    11401 aatcaagata tctttagaag agatcaaatt tggttttgcg aaaaacaaaa taaagcaacc
    11461 aagctttatc ctttgagtga ttttgaagag agtgaagaga gaagagataa aacaaatttg
    11521 gaaaatgatt atcttttagg gcgttttggg gctttgcctt attttaaaga aatactatca
    11581 tcatggagtg ataatgggaa ctgatgattt acgcaaaaaa agaaatacaa aaacaagaga
    11641 tagagaagca aaaagaaaaa aaaatgaaat tatacttata gtatgcgaag gtgaaaaaac
    11701 ggaaaaaaac tatttaaatc aattaaaaga tttttttaga ttaagcaatg taagcataaa
    11761 tattatttca agtaaaaaac caaacccttc acaaatagta gagtttacca aagaaaaaaa
    11821 taaaaattat tcctataata aagtttattg tgtatttgat aaagatacgc attcagattt
    11881 tgacaaagca aggcaagaat gtgaaaaata caaatttgaa gcaattacct caaatccttg
    11941 ttttgaattt tggatacttt tacattttac atacactaca aaatcattta gcacaaatag
    12001 tccttgtaat gaattaattg agagcgattt aaaaaaacat ataaaagatt ataaaaagga
    12061 ttataatttt acaagcatta taaagcaaaa tcttagtaca gctattgcaa atgctcaaaa
    12121 agcgaataaa gaagcagaaa aaaataacta tacaagctca tatactttta tggataaact
    12181 tgcacttaaa tttcaagaat taaacagcgc aagaataaac caatgacaaa tttaccgcag
    12241 ggttgggaag ttaaaacgct tagcgagata ggtgaaattg ttacgggttc aacacctagt
    12301 aaaagtaatt tagattttta tggaaaagat tatccatttt ttaagccgag tgatttcgag
    12361 caaggatatt ttttagaaaa tgctggagat aatctatcaa aactaggttt tggcaaagct
    12421 agacagcttc cacctaaaac aattcttgtg gtttgtatag gttctttagg taaagtagca
    12481 ctaactaaag ttattgggag ttgtaaccaa caaataaacg caattattcc tcataaaaat
    12541 ataatttccg agtatattta ttattattgc atatcttcta aatttcagtc tatattattt
    12601 tcaaaagcac cacaaacaac tttagctatt ttaaataaga ctgaattttc caaactcgaa
    12661 attatttatc caaaagacat aaaagagcaa gaaaggatag tggggatttt ggattttgct
    12721 tttagtaaga ttgatgaaaa tatcaaaaaa gcaaaagaaa atttagcaaa tattgatgag
    12781 cttatgcaaa gtgctttaca aaaggctttt aatccactta atgataatac taaagaaaat
    12841 tatcaactcc cacaatcttg ggaatggaaa agcttagggg atactagcaa ctatggaaaa
    12901 acatcacaag taaaacctag tcaattaaaa ggtaatgatt ggattttaga acttgaagat
    12961 atagaaaaag aaagcggtgt tttgttgcaa aaagtgttat ttcaggatag acaaagtaaa
    13021 agcaataaaa ttaaatttaa caagggtgat attttatttg gaacattgcg tccatatctt
    13081 aaaaaagtga ttatagctga tgataatggg gcttgctctt ctgaaataat gccattttct
    13141 acgggtaatt ccataacaaa tcattttatt tattattatt tatttgccaa ttttttgcac
    13201 gatagaatct caagtttaac ctatggtgca agaatgccta gacttggaac aaaagatggc
    13261 aaatccctac aaatccccct accaccttta caagagcaag agcaaatcgc agagcattta
    13321 gattttgtgt ttgaaaaggc aaaggcttta aaagagcttt acactaaaga gctaaaagat
    13381 tatgaagagc ttaagcaatc cttacttgat aaggctttta agggagaatt ataatgttaa
    13441 aaaatttgcc aaattttaac acattggctt gatatgttaa aaatttttga tttttttaac
    13501 atattgcagt tcaaaaacaa aaataaaaaa taaaactaga ctttgataaa actattttaa
    13561 aagctttaaa gggagaaaat gcaaaacaaa atcgataaaa tcacagatat tctaagaaga
    13621 gatgatggca taagtggtgc tatgcactat acagagcaga ttggctggat acttttttta
    13681 aaatttttag atgattatga gacaaattta aaagatttag cgtttttaga tggcaaagat
    13741 tataaaagca ttttagaaga aaaatttagc tggagtgttt gggcagcgcc taaaaaagat
    13801 ggcaaacttg atgtaaaaaa tgctttaagt ggatcggatt tgcttgaatt cgtaaataaa
    13861 gagctttttc cttatcttaa aaattttaaa aataatgatg attttaaaag tatagagtat
    13921 aaaatcggtg gaatttttga atttatagac aatcgcatag caaatggaca tactttaaga
    13981 gaagtgataa atatcattga tgagattagt tttaataaag aagatgaagt atttgcctta
    14041 ggtgaagttt atgaaaaact tctaaaagat atgggtagcg atggtggaaa tagtggagaa
    14101 ttttacaccc ctcgtccttt gataaagact atggtggaag taatagatcc taaaccaaaa
    14161 gaaagaattt atgatccttc ttgtggtagt tgtggatttt tagttgagag ttttttacat
    14221 attttatata aagacagaac caaaggcaaa aaagcaaatt taagcgtaga agagcttgaa
    14281 tttttaaaaa atgatgctct ttttggtaaa gaaaaaactc cgcttagcta tgcaatgggc
    14341 gttatgaata tgatattaca tgaaatttca agtccaaata tcataaaaac aaatacttta
    14401 agtaaaaaaa taacagatat aacagaaaaa gataaatacg aagtaatact tgcaaatcca
    14461 ccttttggtg gcaaagaaaa agaacaaatt caagaaaatt ttcctataaa atcaaatgct
    14521 actgaacttt tatttttaca gcacatttta aaatctttaa aaaacaacgg aagatgtgcg
    14581 atcatcgtgc ctgaaggtgt gctttttcaa aattcaaatg cctttgtgag tgtaaaaaaa
    14641 gatttactag atgattttaa tttagaatgc gttttgagtt tgccaagtgg ggtatttttg
    14701 ccttatagtg ctgttaagac taatgtgctt tttttctcta aaggtaaaaa atgtatttgt
    14761 gaaggcgatg gagtttatta ctacgaactt ataccgcctt ataaacttac taaaaataag
    14821 cctttagaat acgcacattt taaagaattt ctaaaatgct acaaagaaag aaaaatcact
    14881 gctaattctt ggcttgttag caaaaaagag cttgaagaaa gaaactatga tctaagtgct
    14941 aaaaatccaa atgtaaaaga agaaaaaatc ctaagaacta gcgaagagat tttaaattct
    15001 ttagaagaaa atctaaaaac acaacaagaa tatctaaatg agcttaaaag catactaaaa
    15061 tgattgcaag ttttttgata aaaactaatt tacaaataac ttctaagctc aatttacaat
    15121 aaatatttat tgcttgcatt ctacttttta atatcatcaa gcaaatttag ggcatttaaa
    15181 gcttttggat aaccgatata tggaataaga gctgcaatga tatttagcaa atcttttcta
    15241 ctttgctcca tgttaagatt gccttgtatg tgagctttta cttgattttc tagcccacca
    15301 agtgagataa gatatacaag ggttaaaagc tctctagttt ttagatcaag tcccatgcgt
    15361 gtatagtagt ctccaaaaca attcgcactc aaaaaatcat ttataaaagc tttatcttct
    15421 ggtgtagttt ctatcatttt agtgatattg gcttcactaa aaatagcatt ttgtatttcc
    15481 ctgcctttta ttttgcgatt ttcttgcgta gtagtacctt gtggagttaa aactaaggcg
    15541 atatttagtt ttttaaacac tttattgcaa aggcttaaaa aatcacatac tctagcaaaa
    15601 cccacataag gcgtagcttg ataaatcact tctttaatga caataggact tatatcgttc
    15661 ttgattgcac cttgaagtaa agctttaaac tctatttttc cacctactgc taaagtagaa
    15721 gcaagggtga ttaaaaaata tttttgtgta tccaaatttg cttttacaaa actctcgcca
    15781 aaagtaaaat taatgtgatt agtaaaaaac tccttatcgc ttgtaaaaag cagtttttct
    15841 tccacttttc caaaaaattt ttcaaaaatt tctcttgctt tttgtcttaa ttgcatggtt
    15901 ttatcctttg tgatttttaa agtttataaa aaagagcatt taaaatactc aaaaaaaaca
    15961 taaaagtttt tataaaattt ttatgtttta tttacaaatt tctttactct cttgcttctt
    16021 ttaaggcatt ttcatattct tcatcgctaa caagctcaag ccattctaca tttttaccct
    16081 ctttctcgcc tgtaagtgct atgtgtgttc cactacttgt attagttgca ccatgaaaat
    16141 gctttactcc tataggacag cttatgacat cgcctttttt agctataaag gctttttggc
    16201 ctggaacttt tgtgatgatt tcgccctctg ttacgattaa ggtttgtcct tgaggatgag
    16261 tatgccatgc acttctagca ctggcttcaa attcaaccaa agccccacta aaatttctcc
    16321 actcatttga tttaaacatc atagaaactt ttacattttt gctaaaaaat ttactatcac
    16381 ctttaaaact tccatgaatt cctgcttttt ctaattcttg cattttacct cattttttag
    16441 tattataaaa catgagagct actctaagtc aagtaaaaat ttaaaatctt aatttcattt
    16501 tttctatcct acttcttaca aaaatcatga taattcctaa aatcaacaaa acaatagtat
    16561 ttacgataat ataacgcgta tcgctcaaag aaatcacaag tccacaaata gcagttccgg
    16621 tgcttaatcc tatattggcc acgcttataa aaagtccatt gctaaaatta gcagcctttg
    16681 gaaagggata acttatcata aaatgcgtgc cgttattcat cacacctgct aaaattccta
    16741 atataaaggc aaatattata agtataattt cactataaaa actaaaaagt aaaatataaa
    16801 atcctatcat aattaaaggt gttaaaatca aagtaaaatt tgcgttttta acaagggtct
    16861 ttccggctat ataattgcct ataatatttg aaaaaccata aatagccaat acaatactaa
    16921 ttaaagtaaa attcatcttt cctacactat gtaagaaatc agaaaaataa gagtaaaaac
    16981 cccaaattcc agcatttata caaataacac aaagtatgct aatccataaa agtgggtatc
    17041 ttaaaataag caattgtttg cttattttta cagaatttac ttttttaaaa tcaggaacaa
    17101 aaaataaagt tgctataaaa gataaggtat ttaaaaatac aaaaaataac attgccattt
    17161 taaaactaaa atttccacca aaataactag tcataggtac acccaaaacc attccagcac
    17221 taactgctgc aaaaatctta gctgtagctt ttggaatttc tttcttatct tcgaccaaat
    17281 ttgcaaccat acttagagca agagctatat aaataggatg aaaaaaagca ggaatagctc
    17341 ttaaaataag caattgccaa aattcactca caaaagcaga agttaacgag cttaagataa
    17401 acacagctaa acaaataagc ataagttttt taggattgaa atttgcacaa agtagcggga
    17461 caataggagc acaaaaagta atcacaagtg caaaaatact tacactccaa cctgcatctg
    17521 aaatacttac actaaaattt tgagaaacaa taggaattat acccatcatc cctagctctg
    17581 tgcttaaaat cccaaatacg cctaaacaca gcactaaaat aatttttata tccgataaag
    17641 aattaaattt ttcttgattc aaagcttgca tttttgccct ttattttaaa atttttgcaa
    17701 ttataaaaga tgagagtagc tctaagtcaa gtggtaattt ataaaatcaa tatataaata
    17761 tatcttgata tattaataaa tttatattac actgctctaa aaatttttta ggaaaaacaa
    17821 tgcaagtatt ttttagcact tttaaagagt ttttgtatct atttgtcgaa ctttctgtac
    17881 tttttatagg aatcaatatt ttagttgctt ttttaaatgc aaaatattca aattttttcg
    17941 aaaaacattt aaagcaagat aattttcaaa cacgcctaaa agctatattt tttggttctc
    18001 taacgccatt ttgttcttgc tcatcaatcc cacttttaaa tgctttttta aaagccaaag
    18061 taccacttag cgtttgtatg gcctatctta tcacttcgcc cttaataaat cctattataa
    18121 ttgtagtttt tatagtcagt tttgggatta aaatttcatt catttatata ggatttttat
    18181 atgcaattat tttatttatt tcatttttat tgtcaaaatt tgacacaagc aaatttttaa
    18241 ataatgattt tttagaaaat gagtttaacg aaaaaagtag ttgttgcagc acaaaaaaat
    18301 gttgttctag caaaactcat ataaatctta aacaaatttg tatcgatagc ctgaaagaat
    18361 ataaaaaaat tttaccctat gctcttgcgg gaacttttat tggggcatta atacatgggg
    18421 tttttccaag taattttttt gaaatttatt taaaagatta tggaatttta ggagtattca
    18481 tcgctgcttt tataggtgtt ttgctttata tgaattgcac agcaatgata cctgtggcct
    18541 tggttttaac ccaaacagga attcctttgg gaatcatgat gagtttttta attgcaggat
    18601 cgggttgttc tttacctgaa ttaattctac ttaaaaggaa ttttaaaaca agttttttaa
    18661 tactttttgc ccttttgatt attttaattg ctattttatt tggaatctta atgtttttta
    18721 tataaaggat tttaatgcaa aagtttttaa ccattatttc agcaatcaat gatgaaagta
    18781 gggttttgat tttgcatcat cttttaagat acaaagaact ttgtgtttgt gatctacaag
    18841 agctcttaaa catgggtcaa tcaagacttt caagacattt aaaaatttta aaagatgcag
    18901 gatttttata tgtcaagcgt aagggaactt gggcgtatta tggtatcaac aatgagcttt
    18961 taaaactgca ttctgacctt tttgaaaata ttaaaaatct agatattgac aacatagttt
    19021 tagaacaaaa cacttgcgag aacgataaat gaaacttgca tttatttgta ttcacaatag
    19081 ctgccgttct caaatggcag aagcactagc taggcataaa gctgaaaaaa tgggcataga
    19141 tatcgaagta ttttccgcag gaagcgacac ttctaagggt gtaaattcac aggctataag
    19201 acttatgcgt gaaatttatc aaatcgatat gaaaaagcat tattctaaac tcattgattc
    19261 tttgcctcaa aatttagaca tagtcgtaag tatgggttgt ggcgtggctt gtcctagctt
    19321 aaaatcaagg tattattttg attttggatt aaaagatcct agcggaagtt atgatgatga
    19381 atttaggaaa ataattcaaa ttttagatta taaaataaca gctcttttac aagccataaa
    19441 gacaaattct cttaaggact ttacatgtta ggttttatcg atagatttct cacgctttgg
    19501 atatttttag ctattttttt gggtttaatt ttaggtatca ttttccccaa tatcgcttta
    19561 ttttggaatt tatttgagta caagtctgta aatgtagtat tgactttatg tcttattttg
    19621 atgatgtatc cgcctttggc taaggttgat tatgcaaagc tttcaaaggt atttgattct
    19681 aaaaaagtta tcttgctttc tatgatttta aattggttta taggcccttt gcttatgttt
    19741 atcttagctt ttattttctt aaaagacgag cctttatata tgcaaggagt tatcatcatc
    19801 ggcttggcaa gatgtatcgc aatggtggtg gtatggagcg atttagcaaa aggtgataga
    19861 gaatacacca gtgctttagt agcgatgaat agcatttttc aaattttatt tttttccact
    19921 ttggcttata tttatctgga ttttttacca aaattactag gtcaaagcac tttagctaca
    19981 agtttagata tagatttttc agctctaagt aaaaatgttt tgatttattt aggaattcct
    20041 tttttaatgg gctttataac aagaacccta cttttaaaat acaaaagcaa acgatggtac
    20101 gaaaatacct ttttacctaa aatcagccct ataactctta tcaccctgct agcaactatt
    20161 atcattatgt gttcttacaa agcaaatgaa gtatttcacc tgcctttaga agctttaaaa
    20221 atagcctttg ttttgacttt gtattttatc ttcatgtttt ttctaacttg gtttatttct
    20281 aagaaaaatc atctttctta tcctaaaact tgttctttat gctttagtgc tagtggaaat
    20341 aactttgaat tagctataat catttgtatt gctacttttg ggcttcactc agaacaagct
    20401 tttgcaagca ttataggccc cttagtagaa gttcctgtac ttatcttact tgtaaaatgg
    20461 gcattaggca aaagtttaaa ttctaaaaaa atgaatcaag cctcatgatt ctttacaaaa
    20521 cttatcacaa ggttgatagt ccttgctttc tggattaaac ccatcgactt catttgcaag
    20581 catttcttca taaattttta tctttttgct taaaactttt tcactttctt ttaatgtttt
    20641 aatctggttt tgtaattttt tctttgtttg ctttaacatc tcttgtctct ctttggcagt
    20701 ttttataccc aaagagcaaa gttttatata atgtttgact tgttctattg gcatacctga
    20761 aattctaagc cattctatcc attttgccca ttctatatcg ctttttgaaa aatatttcac
    20821 actattttca tctttttgaa caaaaggaaa caaacctttt ttagcccaaa atcttaaagt
    20881 atgagcacta atttttgttt ctttttctac tttttttata gtataagcca tattttctcc
    20941 tttttaagat aaaaataaaa atttatttta tttttttgtg ataaaataat agccaaatta
    21001 ttagttttat gctaaaaata acaaagatta aaaggaaaat aatgaatagt attaaaatca
    21061 aactttccct cattgcaaat ttaattgcaa tttttgcctt aattgttcta ggtattgtaa
    21121 gtttttattt tacaaaaacc tcactacatg aaagcgctct taaaaatcaa actgatctac
    21181 ttaaagtcac acagtctacc gttgaagatt tccgttccac aaatcaatct tttactagag
    21241 ctttagaaaa agatatcacg aacttacctt atcaatcttt aatcactgaa gaaaatatta
    21301 ttaacaatgt tggtccaata ttgaaatatt atcgtcatag tataaatgca ctaaatgttt
    21361 atttaggttt aaacaatgga aaagttttac ttagtcaaaa atctaatgat gcaaaaatgc
    21421 ctgaattacg tgatgattta gatataaaga caaaagattg gtatcaagaa gccttaaaaa
    21481 caaatgatat ttttgttaca ccagcatatt tagatacaaa tttaaaacaa tatgtaataa
    21541 cgtattctaa agctatttat aaagatggca aaatcatagg agtactgggt gtcgatatac
    21601 catcagaaga tttgcaaaat ttagttgcaa aaactcctgg aaatactttt ttatttgatc
    21661 aaaaaaataa aatatttgca gcaaccaata aagaattatt aaatccatcc attgatcatt
    21721 ctcctgttct aaatgcatat aaaacacatg gagactataa cttttttact tatggattag
    21781 acggcaaaga aagacttgga acttgtacta aagtctttgc ttatacagct tgtattaccg
    21841 aaagcgctga tattataaat aaacctattc ataaag
//
LOCUS       DAZAND010000016        20832 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.016, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000016 DAZAND010000000
VERSION     DAZAND010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20832
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.016"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1233
                     /gene="murJ"
                     /locus_tag="ACHDOB_000477"
     CDS             <1..1233
                     /gene="murJ"
                     /locus_tag="ACHDOB_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HFN3325418.1"
                     /translation="KKKGAFCVSVMMQFSLIVFLFCLLVSFFSSFFTKLFAFGFNADT
                     IALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAALFNLSIVIAAFFVDKN
                     APQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMALSIKFKKAKAKLQGFYGNFF
                     HGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLALFAIALTQVSFPKIL
                     KHLKSGQENLALKFMQRALAFLSILLIASSIIGSAFALEISKLLFERGNFTHEDSVIT
                     AYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLIISALCSMAFIFLIKDE
                     SLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLVIVALIVFTILLILIK
                     PYILSFFIGIFTSFKGVF"
     gene            1233..2621
                     /gene="cysS"
                     /locus_tag="ACHDOB_000478"
     CDS             1233..2621
                     /gene="cysS"
                     /locus_tag="ACHDOB_000478"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HFN3325419.1"
                     /translation="MRLLDSVAKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLANGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNISKALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIRERLSSKKITLLD
                     TPNGTIWEKINA"
     gene            2614..4356
                     /locus_tag="ACHDOB_000479"
     CDS             2614..4356
                     /locus_tag="ACHDOB_000479"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325420.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            4388..5446
                     /locus_tag="ACHDOB_000480"
     CDS             4388..5446
                     /locus_tag="ACHDOB_000480"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HFN3325421.1"
                     /translation="MAYEMIKPLLFKLNPEHAHALVEYSLRALSASFPGALSFLAHKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKIISKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            5443..6693
                     /locus_tag="ACHDOB_000481"
     CDS             5443..6693
                     /locus_tag="ACHDOB_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M16 family metallopeptidase"
                     /protein_id="HFN3325422.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTRTI
                     PKIHTKEPKQDGVKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDIDPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            6686..7582
                     /gene="dapA"
                     /locus_tag="ACHDOB_000482"
     CDS             6686..7582
                     /gene="dapA"
                     /locus_tag="ACHDOB_000482"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HFN3325423.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYIAGLIESLEFRLPLC
                     PPSKENFAKIEEVMKKYKIKGF"
     gene            7582..8361
                     /locus_tag="ACHDOB_000483"
     CDS             7582..8361
                     /locus_tag="ACHDOB_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HFN3325424.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGVNIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDADFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(8402..8707)
                     /locus_tag="ACHDOB_000484"
     CDS             complement(8402..8707)
                     /locus_tag="ACHDOB_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325425.1"
                     /translation="MELDQILLYAFIFLNLFAFFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFVGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(8720..9316)
                     /locus_tag="ACHDOB_000485"
     CDS             complement(8720..9316)
                     /locus_tag="ACHDOB_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFN3325426.1"
                     /translation="MQIIKQACGAYETNCYILFSEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDAFMLEDPFNQGFMPSKADYLIDDEN
                     IISIGGLDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            9390..10130
                     /locus_tag="ACHDOB_000486"
     CDS             9390..10130
                     /locus_tag="ACHDOB_000486"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HFN3325427.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYTLAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDEGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNTFKGKMPEILEI"
     gene            10134..11060
                     /locus_tag="ACHDOB_000487"
     CDS             10134..11060
                     /locus_tag="ACHDOB_000487"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HFN3325428.1"
                     /translation="MSEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVFYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLTQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFNFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            11057..12469
                     /gene="thrC"
                     /locus_tag="ACHDOB_000488"
     CDS             11057..12469
                     /gene="thrC"
                     /locus_tag="ACHDOB_000488"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HFN3325429.1"
                     /translation="MKLVESRNVKNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNANNILSEFFNQGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILTLFDLKNS
                     DEKVFEARNIKKEILDWMQK"
     gene            12466..13185
                     /gene="kdsB"
                     /locus_tag="ACHDOB_000489"
     CDS             12466..13185
                     /gene="kdsB"
                     /locus_tag="ACHDOB_000489"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HFN3325430.1"
                     /translation="MIIIPARLKSSRFHEKILCDIGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKDHESGTDRINEACKKLALKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLSSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALKIYLEK"
     gene            13272..14591
                     /locus_tag="ACHDOB_000490"
     CDS             13272..14591
                     /locus_tag="ACHDOB_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
                     /protein_id="HFN3325431.1"
                     /translation="MSIFSINDNSNYNSILSQSKANKESKENSKISFANAFLKQNASK
                     LNEIQSANSQTLARSEVLNSTNTTNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKY
                     KQADISNNTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIERVAEYNVSDIRE
                     YLGVDKYYSNIDMAETIKQYYNLFSNALGQSFPSDKTSFSEADINSMPSGYAVGGDKC
                     MNFNDPNNRMNITGLKDFSNSLISNVYKTHEQAKEADDLWVDSGYMIDGLLPKTLGLS
                     LEEIKNVSKGEDWQFNPDMSVYPQNEDGSYSKEALFMSFLKAQNGQPVESPKTTLNPT
                     IEAYNRAMAKESFSTTSVDIGDIMTGKVDFASLFKYLASKNGKLEGQLYMYENNISKE
                     SAMGNWALDAEIKQAIANGWKAKPSTINSYADSIMDRLNNLIGQTRA"
     gene            complement(14650..16077)
                     /locus_tag="ACHDOB_000491"
     CDS             complement(14650..16077)
                     /locus_tag="ACHDOB_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HFN3325432.1"
                     /translation="MLINALYFVNSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLAYFALIHTPILYFWSKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFAILALRFSFLFNLFSLPFALFSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQIYIAEAGAR
                     LKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEKAFLHSST
                     QKEEDKLISLYDDKLSLIHSSLEGLEFKIDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYELCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKNGDLILFSNDAPSFM"
     gene            complement(16078..16797)
                     /locus_tag="ACHDOB_000492"
     CDS             complement(16078..16797)
                     /locus_tag="ACHDOB_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFN3325433.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGANKELMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLDVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGVNL
                     SPMMYETFKKVVDEDFSEIFAKQKAKSLIFWGKSDEATPLYCGEKMHELLKNSTFYPL
                     EGDHFFFLKHSAFIAQKIKEI"
     gene            complement(16799..17014)
                     /locus_tag="ACHDOB_000493"
     CDS             complement(16799..17014)
                     /locus_tag="ACHDOB_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HFN3325434.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            complement(17074..18114)
                     /locus_tag="ACHDOB_000494"
     CDS             complement(17074..18114)
                     /locus_tag="ACHDOB_000494"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HFN3325435.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFVFCDEERRFY
                     HIPSEKMNSKTFSTKAYKNEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEVYLNEINPNPGSLANYLFKDFNTTLNALADQISLEKMIKINYN
                     FLHSINGQKGKL"
     gene            complement(18124..18675)
                     /gene="ruvA"
                     /locus_tag="ACHDOB_000495"
     CDS             complement(18124..18675)
                     /gene="ruvA"
                     /locus_tag="ACHDOB_000495"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HFN3325436.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATGTSELIKEALKKLG"
     gene            complement(18651..20510)
                     /locus_tag="ACHDOB_000496"
     CDS             complement(18651..20510)
                     /locus_tag="ACHDOB_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein A"
                     /protein_id="HFN3325437.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNLMSFCNQHKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVDENEVVLKHA
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            20614..>20832
                     /locus_tag="ACHDOB_000497"
     CDS             20614..>20832
                     /locus_tag="ACHDOB_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HFN3325438.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKA"
BASE COUNT         7200 a         2694 c         3526 g         7412 t
ORIGIN      
        1 aaaaaaaaag gagctttttg tgttagtgta atgatgcaat ttagccttat agttttttta
       61 ttttgtcttt tggtaagttt tttttcctct ttttttacta agctttttgc ttttgggttt
      121 aacgcagata ctatagcttt agcggctcct ttggtggcga ttaatttttg gtatttgttt
      181 tttatttttt tagttacttt tttaggggct attttaaatt atagacaaaa atttttcatt
      241 acctcttttt ctgcggcatt atttaactta agtattgtta tagctgcctt ttttgtggat
      301 aaaaatgcac cgcaaaatac actttattat ttttcttatg caacggtttt aagcggggtg
      361 gcacagctta ttttacattt gcttgtttta aaaaacaatc ctgtaatccg tgctatggct
      421 ttaagtataa aatttaaaaa agccaaggcg aaattacaag gtttttatgg caattttttt
      481 catggagttt taggttcttc tgcgactcaa tttagctcat tgcttgatac aactatagct
      541 agttttttaa tgagcgggag tatttcttat ctttattatg caaatcgtgt cttccaactc
      601 ccccttgcac tttttgctat cgctctaact caagtttctt ttccaaaaat tttaaaacat
      661 ttaaaaagtg gtcaagaaaa tttagcctta aaatttatgc aaagagcatt agcgttttta
      721 agcattttgc ttattgcttc tagtattata ggttctgcgt ttgctttgga aatttcaaag
      781 cttttatttg aaagaggaaa tttcactcac gaagatagtg tgattacggc ttatgttttg
      841 attgcttatc ttatagggct tttacctttt ggtttgcaaa agcttttttc tttgtggctt
      901 tatgcaaaat ttaaacaaaa aacagcagct tggatcgcgg taaaatcttt aattatcagt
      961 gctttatgtt ctatggcttt tatatttttg attaaagatg aaagtttaaa ggttattgca
     1021 gtagcacttt caagctctat tagtgctttt tatttgcttg gagctaatat caaagaattt
     1081 ggttttaaga aattttttgc tttaatatct attaaaattt gcttgttggt tatagttgct
     1141 ttgattgttt ttacaatctt acttattttg attaaacctt atattttaag tttttttata
     1201 ggaattttta caagttttaa aggagttttt taatgagatt attagacagt gtagcaaaag
     1261 agaaaataaa acttgataaa aaagatatta gtatttactt atgcgggcct acggtttatg
     1321 atgatgcaca tttaggacat gcaagaagta gtgtttgttt tgatcttttg cgtagggttt
     1381 tacttgctaa tggcaatagg gtaaaatttg ctagaaatta tacagatatt gatgataaga
     1441 ttttgaaaaa aatggctcaa agtggtcaaa ctttagagga aattacggaa ttttatatca
     1501 aaagttatga agaggatatg agggttttaa atgtattaga tcctgatttt aaacctcgtg
     1561 caacgcatta tataacagct atgcttgatt tgattaaaaa gcttgctaag gatgggtttg
     1621 tttatactct agaagatgga atttattttg atacaagtaa agatgaaaaa tatttaagcc
     1681 tatcaaatcg caatttagaa gaaaatatct ctcgtctaag taatgaagtg caaaaaagaa
     1741 atgaaagcga ttttgtgctt tggaaatttg atgaaaattt ttacgaaagt gaatttggca
     1801 aagggcgtcc aggttggcat actgaatgtg ttgctatgat tgattctatt tttgaaaata
     1861 ctcttgatat acatgctgga gggatagatt tgctttttcc tcatcatgaa aatgaagctg
     1921 cgcaatgtcg ttgtggatgt aagagaaaat tagcaaatat ttggcttcat aatggttttg
     1981 taaaaatcga tggtgaaaaa atgagtaaaa gtttaaataa tagttttttt ataaaagatg
     2041 ctttaaaaga atttatgggc gaggctttaa gattttatct tttgagttct cattatagat
     2101 ctcattttaa ttattcttta tcggatttag aaaatgctaa aaaacgttta gataaatttt
     2161 atcgccttaa aaaaagattg gatttaggtg aaatttctga ttttgatgtt ttaaatgata
     2221 ttgaaataaa aagcgaaatt gctaagcaaa ttttagagat tttaaatgat gatttaaata
     2281 tttctaaagc cttagctctt ttggatgatt ttatcagtag tgcaaattta gagttggata
     2341 aagaaagcaa aaataaaatt ttaaaacaaa atatcaaaga agctttaagc gagctagcta
     2401 aaatttttgg ctttggtttt atggatacaa ctttatattt tcaatggggt gtaagcaaag
     2461 aagaacgaga agaaattgaa aagttaattt tagaaagaac tgaggctaag aaaaacaaag
     2521 attttaacac agctgatgca ataagagagc gattaagtag taaaaaaatc actcttttag
     2581 atactccaaa tggaacaatt tgggagaaaa taaatgcata atgagatgaa tttaaaagag
     2641 gttttaatac gctttaagcc cttttataaa agatattgga aacaatttgc tatagctatt
     2701 ttcggtatga ttttagcaag cggaggaact gctggaagtt tttatgcttt agagcctatt
     2761 ttaaattata ttttcgttga aaaaaatgaa gctttacttt atacagtgcc ttttttgcta
     2821 gtattgatgt atttttttaa aaatcttgga acttatttac aaagttttta tgtttccttt
     2881 ataggaacag atatgttaag agtattgcgt gctagggttt tgaaaaatgt tttacgcttg
     2941 gatatggatt tttttaaacg ctatagaagc ggagagcttg taagtcgttg tactaatgat
     3001 attaatgcac ttcaaagcat agtatcaaac attattcctg atttttttag agagctttta
     3061 actgctatag gactgcttgc ggtagtcttg tatcaaagtc ctactttggc tttttttgct
     3121 ttagtgattt tgcctttagc tatttttcct ttggtatggt ttgctaaaaa acttaaaaaa
     3181 tatgcaagaa atatacaaga aacaaattcg gatttacttt cttatttggg tgaaattttt
     3241 tcaaatattg aattgatcaa agctaatgat aatgaaaaaa aagaaagtga taaatttgct
     3301 aagcataatg atactttatg taaattaaac ctaaaatccg cacgtattga tgcacttaca
     3361 agtcctttaa tggatatgat gggttctgtt ggggttgctg tggtgattat tgtagggggt
     3421 agagaggtta tcaatggttc tatgagtgtg ggaagtttta tcagttttgt ttcggcactt
     3481 tttgcgatat atactccttt aaagcgtctt tcgtctttat atggaaaact tcaaggtgct
     3541 gttgcggcaa gtgaaagaac tttttattta ttggatttag aacctcaaat taaaggtgga
     3601 agcaaagaat taaaaaacat tgaaaaaatt agctttgaaa atgttgaatt tgcttatgaa
     3661 aatccgcata aaagtgtttt aaaaggcgta aattttgatt ttgttaaagg gcaaatgctt
     3721 gctcttgtag ggacaagtgg gggtggtaaa tcttctatta ttaatctttt gatgtatttt
     3781 tatgaaaagc aaaaaggtaa aattttactc aatcaagaag atattagcac ttttaccata
     3841 gaaagcttac atgctaaaat aggacttgta acgcaaaata tttatctttt taatgatagt
     3901 tttgctgcaa atattgctta tagcgaagag ttagaagaag aaaaagtcat ccaagcttta
     3961 aaattggcca atgcctatga atttgttaaa gaaatgggtg ggatttgggc tgaagtgaaa
     4021 gaacatggta agaacttaag tggagggcaa aaacaaagaa tagcaatcgc tagagcttta
     4081 tataaaaatc ctgatgtgct tatttttgat gaagcaactt cagctttgga taatgaaagt
     4141 gaaaaagcaa tagttaaaac tatagaaaat ttaaaacaag atagattgat tttagtggtt
     4201 gcacatcgtt taagcactat agaaaatgca gataaaatag tagtattgga taagggcaag
     4261 gtattggcaa taggtaaaga tgaagagctt ttgcaaactt gttctttgta tcaaaaattt
     4321 aaaagcaaag aaaaaacaaa gcctagcttt agttaatttt agttagaatt tcaaaaagga
     4381 ttaaaaaatg gcttatgaaa tgataaaacc tttacttttt aagttaaacc ctgagcatgc
     4441 acatgctttg gttgaatata gcttaagggc tttaagtgct agttttccag gagctttaag
     4501 ttttttagca cacaaatata tagttgatga tgagagttta aggcaaaatt tacttggact
     4561 tgattttaat aatcctgtag gtttagcagg aggctttgat aaaaatgcca ctatgataag
     4621 acctttgagt gctttaggat ttggtttttt agaagtggga acttttactc caaaacctca
     4681 agaaggcaat gaaaagccac gcctatttag acttgtaaaa caagaaagta tacaaaatgc
     4741 tatgggtttt aacaacgaag gtgctgaaaa gattgcttta agacttgcaa aaacttatcc
     4801 ttttgttttg cctttagggg taaatatagg gaaaaataaa atcactccaa atgataaagc
     4861 cttggaggat tattttactt tgtttagaga ttttaaggat ttgtgtgatt attttatcgt
     4921 taatatctca tctcctaata ctaaaaattt aagagagttg caaaatgatg attttttaaa
     4981 taccttgctt gaagaagcca aaaaaatcat ttctaagcct attttgataa aaattgctcc
     5041 tgatatgaaa atagatgatg ctttaaattt atgtgaaaat gccattaaaa aaggtgcaga
     5101 tgggtttata ttagccaata ctagtgttga ttatagcttg ctagataata atcgtacttt
     5161 tggtggtatt agcggaaggc tgattacgga aaaaagtggt atttttttca aagaagtagc
     5221 taaaattctt tttggcaaaa ccttgcttat tgcaagtgga gggattgata gtgctgatat
     5281 tgcttatgag cgtattaaaa atggggctaa tttagtgcaa gtttatacag ctttgatttt
     5341 taaaggccct tctttggtaa aaaatatcaa tcaaaatctt atagagcttt taagaaaaga
     5401 tggtttttta cacattagcg aagctgttgg ggtaaattta aaatgattgc ttatgaaaaa
     5461 attcaattaa aaaacaagct tgaagtttat gctttacctg taaataaaaa tagcgatgtg
     5521 attagcgttg atatttttta taaagtgggt tcaagaaatg agatcatggg aaaaagcggc
     5581 atagctcata tgctagaaca tttaaatttt aaaagtacta aaaatttaaa agctggcgaa
     5641 tttgatgaga ttgttaaggg ttttggtggt gtggataatg caagcacagg ttttgactat
     5701 actcattatt atattaaatg tgcgaagaaa aatttagata aagctttgga actttttgca
     5761 gaacttatgg caaatttaaa tttaaaagat gaagaatttc agcctgaaag agcagtggtt
     5821 ttagaagagc gtagatggag aacagataat aatcctttgg gatatcttta ttttagactt
     5881 tttaatcatg catttatgta tcatccttat cattggactc ctataggttt ttttaaggat
     5941 atagaaaatt ggagcattga agatattaaa gaatttcata gtatttatta tcaacctaaa
     6001 aatgcgattt tacttgtaag tggcgatata gaaagtaaag aagtttttga gctttcaaaa
     6061 aaacattttg aaaagattaa aaatactagg actataccta aaattcacac aaaagagcct
     6121 aagcaagatg gagtaaaaag aatatatttg cataaaaact cagatactga actattagcc
     6181 cttgcttata aaattccaaa tttcaagcac aaagatatac ctgctttaaa tgctttatcc
     6241 gagcttttag gaagtgggaa aagttcttta atgagtgaaa ttttgattga taaattaaat
     6301 ttaatcaatg attattatgc ttatgttaat gattgtatag atgaaaattt atttattttt
     6361 atttgtaatt gtaaccccaa tgttaatgca gaaaaagtag aaaaagagct tttaaaaatc
     6421 attgataaac ttaaaatggg taaaatttct caaaaagatt tgcaaagagt gaaaaataat
     6481 gtcaaaagtg attttatttt ctcacttaac aatgctagtg cagtggcaaa tatttatggt
     6541 tcatatctag caagagggga tatcgatcct ttgttaaatt atgagaaaga tatacaaaat
     6601 ttggaattaa aagatttgat ttcttgtgct aaaaaatatt ttattcaaga aaattcaact
     6661 acggtaattc taagaaagga ttcaaatgga taaaaatatt atcattgggg cgatgacggc
     6721 ccttattaca ccgtttaaaa atggaaaagt tgatgagcaa agttatgcaa gattgattaa
     6781 aagacaaata gaaaatggca tcgatgcagt agttccagta ggaacaacag gagaaagtgc
     6841 aactttaacc catgaagaac atagaacttg catagaaata gccgttgaaa cttgcaaagg
     6901 aactaaggtt aaggttttag caggtgcggg aagtaatgca actcatgagg cagtgggttt
     6961 ggctaaattt gctaaagaac atggtgccga tgggatttta agtgtggcac cgtattacaa
     7021 taaacctacg caacaaggac tttatgagca ttataaggct attgcgcaaa gtgtagatat
     7081 tcctgtgctt ttatataatg ttccaggaag aacaggttgt gaaatttcaa cagatactat
     7141 tatcaagctt tttagagatt gtgaaaatat ttatggggta aaagaagcga gtggaaatat
     7201 cgataagtgt gtggatttgc ttgcgcacga acctagaatg atgcttattt caggagaaga
     7261 tgcgatcaat tatcctatac tttcaaatgg cggaaaggga gttatttcag taacttcaaa
     7321 tttattaccc gatatgatta gcgctttaac tcatttcgct ttagatgaaa attataaaga
     7381 agctaaaaaa atcaatgatg aactttataa tatcaataaa attttatttt gcgaaagtaa
     7441 tcctattcct attaaaacgg ctatgtatat agctggattg atagaaagtt tggagtttag
     7501 acttcctctt tgtcctccaa gtaaggaaaa ttttgctaaa attgaagaag tgatgaaaaa
     7561 atataagatc aaaggatttt aatgaataca gaatttcaag gaaaaacttt agtaatcagc
     7621 ggtggaactc gtgggatagg taaggctata gtttatgaat ttgctaaagt gggtgtaaat
     7681 atagctttta cttataattc taatgcacaa attgctgatg aaatggtaca agatttggaa
     7741 aaaaattata aaattaaagc tagagcttat gaatttaata tcttagaacc tgaaacttat
     7801 aaagaacttt ttgaaaaaat tgatgcggat tttgatagag tggattattt catctcaaat
     7861 gctatcattt caggacgtgc ggttgtaggt ggttatacta aatttatgaa attaaaacca
     7921 aaaggaatta ataacatctt tacagccaca gtaaatgctt ttgttgtggg cgcacaagaa
     7981 gcagctaaaa gaatggaaaa agtagggggt ggaagcatta tttctatctc atctacagga
     8041 aatttagtgt atatagaaaa ttattcaggt catggcacag caaaagctgc cgtagaagct
     8101 atggcaagat atgcggctac tgaacttgga gaaaaaaata tccgtgtaaa tgtcgtaagt
     8161 ggtgggccta ttgaaactga tgctttaaga gcttttacaa attatgaaga agtaaaacag
     8221 gctactataa atttaagtcc tttaaatcgc atggggcagc ctgaggattt ggctggagcg
     8281 tgtctttttc tttgttcaag taaggcaagt tgggtaacag gacatacttt catcgttgat
     8341 ggtggtacaa cttttaaata aaaattaaga aaaatcaatg gatttttctt aaaaatattt
     8401 ttcaatcaag ttttaatttc catcctaaaa aaacacttaa taatgcaagt aaaaaaataa
     8461 aatttaaagt ccaattgcca aaacctacaa aacctataga taatacgctg taaaaaaatc
     8521 ctcccacagc tgaataaata caaatcgtac ttaaagatcc attttctgcc atttttttac
     8581 atgggcagat tttataaaat tttttatcgt taaattgatt tttcttttta tttcccaaaa
     8641 ataaaccaaa aaaggcaaaa agatttaaaa aaataaaagc atataataaa atttgatcta
     8701 attccatttt aaatatacct taaaagtatc taagccaaga gggtagatgg acttgctctt
     8761 cttttaaagt agtctcttgt ccatgtcctg gtaaaagttt aaaatcttct ttgtaagtca
     8821 taactttttc taagctttgt ttcattaaat ttgcatctga ataaggaaaa tcccatcttc
     8881 ctatgcttct ataaaataaa aaatctccac taaacatgat atttttacct acaatttcta
     8941 tcatagtgca acctggtgtg tgtcctggta aaaagtgaaa tttaaagtca agtccgccta
     9001 tagaaatgat attttcatca tcaatcaaat aatccgcttt gctaggcata aaaccttgat
     9061 taaaaggatc ttcaagcata aaagcatcat ttttatgaat ataaatgggg atttgatagg
     9121 cttgttttac tttttcatta tcccaaacat gatcgtaatg tccgtgagtg tttaaaatcg
     9181 ctaaaggatt ttttacatgt tttttgatga aatttagtgc atcaaaacca ggatcaatga
     9241 taatttctcc atgctcacta aataaaatat aacaatttgt ctcataagct ccacaagctt
     9301 gtttgataat ttgcattttt tacctcttta ataaaaaatt tgccttaaat aaatataatt
     9361 atacattaaa tttttaaaag gcaagcttta tggattggca aaagattacg gaaaaaatgt
     9421 gtgattttat acaagaaaaa gtgaaaaatt ctcaaagtca aggtgttgtt ttggggctta
     9481 gtggcgggat tgattctgct ttagtagcaa cgctttgcaa aagagcttta aaagagaatg
     9541 tttttgctct tttaatgcca actcaaattt caaataaagc caatcttgaa gacgctttaa
     9601 ggctttgtgc ggatttaaat cttgaatata aaatcataga aattcaaagc attttggatg
     9661 cttttataaa gcaaagtgaa aataccactc tagtatcttt gggaaatttt gcagcgcgta
     9721 ttagaatgag tttgctttat gattattctg ctttgaaaaa ttctttagtc ataggcactt
     9781 ctaataaaag cgaattactt ttgggttatg gtacgattta tggagattta gcttgtgctt
     9841 ttaatcctat aggatcgctt tataaaagtg aaatttatac cttagcaaaa taccttaact
     9901 tgcatgaaaa ttttatcaaa aaagctccaa gtgcggatct ttgggaaaat caaagcgatg
     9961 aggcggattt gggtttttct tatgcaaaaa tcgatgaagg tttaaaagcc ttagaaacta
    10021 atgatgaaaa acttttaaga acgcttgatc cttctttgat tgctatgcta aaaaatcgca
    10081 tgcaaaaaaa tacttttaag ggaaaaatgc ctgaaatttt ggaaatttaa acaatgagtg
    10141 aagaaaaaaa ttatgaactt tggcttgata attatttttt taagcctaat ttttggcaaa
    10201 aatgccttgc ttttatactt ttacctttaa gtgtgtttta tgcttttttt gcgattttaa
    10261 atactttttt tcgtaaaaaa atagttttta aaaagcctgt tattagcgtt ggtaatttaa
    10321 gttttggagg taatggaaaa accccgcttt gtaaagctat agcaagggaa tttgatggcg
    10381 tttttatagt gcttaggggc tataaaagaa agtctaaagg tttgtttgtt gttaaaaatc
    10441 aaaatgaaat tttatgcacc ttaacgcaaa gtggcgatga agctatggag tatgcttttg
    10501 aagaaaatat caaaggtgtg attgtgagcg aagatagagt aaaaggtatt gaaaaagctt
    10561 ttgagttggg agctaaaatc gttgtacttg atgatgcttt ttctaaattt catattaaaa
    10621 aatttgatat tttacttgaa agcaaaatca aaccttattt taattttacc ttgccaagtg
    10681 gagcttatcg tttgccgaaa ttttatgaaa aaagggctga ttttattgca ttagaaggca
    10741 gggattttgt gcgttattct tttgtaaaag aaaatccaaa ggctgttttg gtaactgcta
    10801 ttgctaaacc ttttagattg tatgagcatt ttatcaaagc aagggcttgt tattttttta
    10861 aagatcatta tgagtttaaa aaagaagaat tagaaaattt gctaaaaaaa cataattgcg
    10921 atacactaat gcttactttt aaggattttg ttaaagttaa agattttggt tttaaatgtc
    10981 aaattataga attaaatata gaattaaaag attcattaag agaaaaaata aaaacttata
    11041 tcaaggagtt tgaacagtga aattggtcga gagtagaaat gtaaaaaatg tatcaagttt
    11101 taaggaagct ttgattaacc caaacgcccc agaaggaggg ctttactcac ctttaaattt
    11161 gcctattttt gaaggagaaa aatatgccaa tttgtcttat aaagattttg ctttaaagct
    11221 tatagaaagt tttggttttg gcgaagaaga gctttttaaa aaggctttga aaagttacga
    11281 aagctttgat gataaaaata cacctatttc tttgcaaaaa atctctgaaa aaacctatat
    11341 taacgagctt tggcatggac ctacaagagc ttttaaagat atggctttgc agccttttgg
    11401 cgtgctttta agtgaatttt caaaggataa aaatatttta attatttgtg ctacaagcgg
    11461 cgatacagga cctgcaaccc taaaaagctt tgaaaatgca aaaaatgtta aagtagcttg
    11521 tatgtatcca aaaggtggca caagtggagt tcaagagttg caaatgcgag ctttagataa
    11581 ggataacttg aaagtttttg ccatagatga ggattttgac gcagcgcaac gcactttaaa
    11641 agaattgctt ttttcaaaag attttcaaaa tgaaattaaa gctttaaatt atgagctttg
    11701 cgcagctaat tctgtaaatt ttgggcgtat tttatttcag attatttatc attattatgc
    11761 gagtttaaaa ctttttaatg agtttttaga agaagtacaa atcatcgttc caagtggaaa
    11821 ttttggcaat gctttaggag ctttttatgc taaaaaaatg ggagctaaaa tttcaaaaat
    11881 caaaatcgct tcaaacgcaa ataatatttt gagtgaattt tttaatcaag gcgtttatga
    11941 tttgcgtgaa aaaagtctta agaagactat ttctccagct atggatatac ttatttcatc
    12001 taatatcgaa agacttttgt ttgcgaaatt taaagataaa agaactaaag aactgatgaa
    12061 tttgttaaaa aatgagagat attttaaact tgaaaaagaa gaattacaaa gtttgcaaga
    12121 agattttgag gcggattttt gcaccgatga agaatgtatg caatttatca aacaaagtaa
    12181 aattttaatt gatccgcata ccgcaacttg ttttaaaatg cttgatcctt taaaacctag
    12241 cattatcact tctacagcag aatggacaaa atttactcca agtatgataa aagctttata
    12301 tgatagggat tctaagaatg aaaaagaaga tttaaaattt atagctaaag agtttaatgt
    12361 ccaagttaaa gatgaaattt tgactttatt tgatttgaaa aatagcgatg aaaaggtatt
    12421 tgaagccaga aatataaaaa aagaaatttt agattggatg caaaaatgat tattattcct
    12481 gcaagattaa aatcaagtcg ttttcatgag aaaattttat gtgatatagg tggagtgcct
    12541 atgtttgtgg ctactgcaag aagagtaagt agcgtggatg aagtttgtat agctttagac
    12601 gatgaaaagg ttttaagtat cgctaaagaa tatggtctaa atgcggtttt aacaagcaaa
    12661 gatcatgaaa gcggtacgga taggattaat gaagcttgta agaaactagc tttaaaagat
    12721 gatgagatta ttatcaatgt ccaagctgat gagcctttta tagaatgtga aaatttatta
    12781 aaatttaaag aatttgcaag ttcttgcttg gataaaaaag cttttatggc gagttgttat
    12841 aaaaaaatca ctcaagaaga agctatggat cctaatctgg ttaaagtgct ttgcgataaa
    12901 gaagggtatg ctttgtattt ttcaagagct aaaatccctt atgaaagaga aaattacgag
    12961 gaaagtttta aagggcattt aggcatttac gcttatagtg taaaagcatt aagggagttt
    13021 tgttctttat caagttctgc gcttgaaaga gcggaaaagt tagagcaatt aagagctata
    13081 gaaaatggta aaaaaatcaa aatgcttgaa atttcaacaa caagcatggg gattgatact
    13141 aaagaagact atgaaagggc tttaaaaatt tatttagaaa aataactcca ccccaaaacg
    13201 gaacagattt tgcttatatt attttaatat atttagattg aaggcaaaaa aatctaaatc
    13261 aaggaattaa tatgagtatc tttagtatca atgataactc aaactataat tctatacttt
    13321 cacaaagtaa agccaataaa gaaagtaaag aaaattctaa aataagtttt gctaatgctt
    13381 ttttaaaaca aaatgctagt aagttaaatg aaattcaaag tgcaaattca caaactctag
    13441 caagaagtga agtattaaat tctactaata caacaaatac tagcaataac actaatttta
    13501 gtataagtag taagacaagt tctcctaatt atgatatatc tagtgaattt aaaaactcta
    13561 tttatactct aaaatataaa caagcagata taagtaataa tacagcctat ggttatagtg
    13621 tagataaaga tggctatatg ggaagtgatt ttaacaaagc tgcaggattg cctgaagatt
    13681 ttaagataca taaatctact ttggatgaga tagagagagt ggctgaatat aatgtttctg
    13741 atataagaga atatctaggt gtagataaat attattctaa tatagatatg gctgaaacca
    13801 taaaacaata ctacaatctt ttttctaatg ctttaggtca aagttttcca agtgataaaa
    13861 caagttttag tgaagcagat ataaattcta tgcctagtgg atatgctgta ggtggagata
    13921 aatgtatgaa ttttaatgat ccaaataata gaatgaatat tacaggttta aaagattttt
    13981 caaattcttt aatttcaaat gtttataaaa cccatgaaca agcaaaagaa gctgatgatc
    14041 tttgggttga ttcaggatat atgattgatg gattattgcc taaaacttta ggtttatcct
    14101 tagaagaaat caaaaatgtt tctaaaggtg aagattggca atttaatcct gatatgtcag
    14161 tttatccaca aaatgaagat ggaagttatt ctaaagaagc tttgtttatg agttttttaa
    14221 aagctcaaaa tggacaacct gttgagagtc caaaaaccac acttaatcca acaatagaag
    14281 cttacaatag agctatggct aaagagagtt tttcaactac tagtgtagat ataggtgata
    14341 ttatgacagg caaagtagat tttgcaagtc tatttaaata tctagctagt aaaaatggaa
    14401 aattagaagg gcaactttat atgtatgaaa ataacatttc taaagaatct gctatgggta
    14461 attgggcttt agatgctgaa attaaacaag ccattgccaa tggctggaaa gcaaaaccta
    14521 gcaccattaa ttcctacgct gattctataa tggatagatt aaataatctt ataggacaaa
    14581 ctagggctta aagaagtatt tgcacgaagt caaattgaaa atgatgacat ttgcaaatac
    14641 ttatacgaat cacataaaac taggcgcatc gtttgaaaag agtattaaat ctccgttttt
    14701 tgtctcttta gctagagttt gaactagctg gcttttttct ttaagtataa tggtttttat
    14761 ttttaactct tttttgaaaa tttcagcatt gatttgtgcg ctaatgatag caagatcaaa
    14821 acactcattg atgattttag caagttttat attttcttct tcgcttactt ccactatacc
    14881 aggacttact aaaactttgc gtcctttata gcttttacaa agttcatagc ttgtgctcat
    14941 acctttaaaa tttccattaa aaccatcatc tatgataaat ttaggctctc ttgaaagcac
    15001 ttgcaagcga tgttctacgg agtttatatt taaaacttgc ttttgaattt tttctagctt
    15061 tataccaaga taatgagcac aaagtataca aacacaaaga ttttgcgcgt taaaatcccc
    15121 taaaatttga cttttaaaat cataggattt attttctata tcgattttaa attctaaacc
    15181 ttcaagactt gaatgaataa gacttaattt atcatcataa aggctgatga gtttatcttc
    15241 ttctttttgg gtgctagagt gtaaaaaagc cttttctagt cttttggaat ttaaggcttc
    15301 aagtttggtt gaacggatat tttcaacact tttaaaatac tctaaatgtg cattgcctat
    15361 ctctcctact atgctgatgt gaggttgtaa aaaacgagtg atttcatcaa tatcgccttt
    15421 aagtctagca cctgcttcag ctatgtaaat ttgagtatct tggcttaaat tggtattgat
    15481 atcagcaact atacctagca aggtattgac agagcgtggt gttttgtagc ttttaaagtc
    15541 atcttttaaa agttcgtata gaaaattttt aatacttgtt tttccaaaac ttgcggtaat
    15601 gagtatgatt tttaaatttt cattggctct taatttggct ttggcttgtt ttttataata
    15661 taaatttgta aaaaactcat aaattttaag actaaataaa gcaaaaggaa ggctaaaaag
    15721 attaaaaaga aaagaaaaac gcaaagcaag tatagcaaaa atagcattat aaacaaaaac
    15781 aaaaacaaaa aaccatttaa ccttacttgt aaaaacaagc tttttatcta tacctttgct
    15841 ccaaaaatac aaaatcggag tatggatcaa tgcaaaatat gccaaagaat ataaaggaaa
    15901 agctaagaat aaaaaataag gaataaataa aaaatacaaa tgccacaaag gtttatgata
    15961 atgaaaaaac acgcgtttaa atttataaga ataccattgt aaagcactca taagataaaa
    16021 agctatacaa aaattaaaaa ataaagaatt gacaaaataa agagcattga taagcattta
    16081 aatttccttg attttttgag ctatgaaagc agaatgtttt aaaaagaaaa aatgatcccc
    16141 ctctaaagga taaaaagtgc tattttttaa aagttcatgc attttttcac cacaatacaa
    16201 aggcgtagct tcatcgcttt ttccccaaaa aatcaagctt ttagcctttt gcttggcaaa
    16261 aatttcacta aaatcctcat caacaacctt tttaaaggtt tcatacatca taggactaag
    16321 atttactcca tctttactag caaaatagcg ataaaatttc cccaaaccaa agagttttaa
    16381 aattttaaaa atacggattt taaaacgcac ttttagggat tttttagcca aaattcccgc
    16441 acttgaaagt aagattagag tgtctttttc ttttgcgagt agggtactta cttttccacc
    16501 aaaagaatgt cccatgaaaa aacagacatc gagttttttt tgttttaaaa aaagttctgt
    16561 gatattggca taatcttgag tgtttaaaat ttcttccacg cttgaatttc caaaacccgc
    16621 taaatccata taaatttgac aaaaatcttt caaaaaagga caaaaacttt gcttcataag
    16681 ttctttattg gctccccagc cgtgtaagat aagtatttgc ggtaaggaaa gatcacctaa
    16741 aatttcataa gaaatttgat aagttttgtt tttataagaa agttgagttt gagccatttt
    16801 aagccttttg atttttgtag atattttcta aaagttgcat ggcattttgt aagcgttcaa
    16861 attctttcat actaagcatt acagcttcaa atttgttatt ttttaaaata actatttttc
    16921 cactttcgct ttttttgagt ttttccataa tggggctaaa atttcttacc acttcggtgg
    16981 cagtgtaaat ttcatcttgt ttaaaagaga gcatttttct tcctaaaata cgctaaattt
    17041 tatgtataat ttagcgtatt ttgacttaaa agcttataat tttccttttt gtccgttgat
    17101 ggagtgaagg aagttgtaat tgatttttat cattttttca agtgaaattt gatcagctaa
    17161 agcgtttaaa gtggtattaa aatctttaaa aagataatta gccaaagaac caggatttgg
    17221 gttgatttca tttaaatata cttcattatc cagtataaaa aaatcgcagc gtattaaagc
    17281 acctttaaac aaaggattgt agatcttttt aaaactgtct ttgagttttt cttttaattc
    17341 ttcgcttaaa tccgcttcta taagttcatt gtgtcctgaa aagctaagat atttttgttc
    17401 aaagtctaaa aattcttttt tctttggctc ttctataatg gaaaaaacaa actcatcatt
    17461 gatcatacat cctgcaagat tgtattcttt gatattgttt ttaaattctt ctactacaag
    17521 atcattgtca aattcaaaac ctacatcttt ggcgtattct aaatcttttt catcttttac
    17581 tatgctaata cctatactac ttccaagtct tgcaggtttg ataatacaag gaaaactaag
    17641 cttttcttta gagttttgat tttttcttag catggtataa tcaagtgttt ttacaccaac
    17701 gcttttggca taaagtttgg taagttcttt gttgaaagat aatacactag cttcaagcct
    17761 aggtcctata aatttaatag aataaaactc aaataaagcc gcaatttttc catcttctcc
    17821 atctctacca tggataagat tgatcacgca ttcgcactct agtttatttt cttttaaaaa
    17881 gcctttgcta aaaaaacctc cttgtttgat gaagagttct ttttcatttt tataagcttt
    17941 ggtgctaaaa gttttagaat tcattttttc gcttggaatg tgataaaatc ttctttcttc
    18001 atcgcaaaaa acaaattcta aattttgatt gataactttt ttaagtacta cagcacttac
    18061 tatactgatc tcatgttcat aagaatttcc gccaaaaagt attgcaaatt tcattttatt
    18121 cctttatcct agttttttaa gagcttcttt gatgagttcg cttgttcctg ttgcttgagc
    18181 acttgctaaa acacttatga ttttttcttg tttaaagcct agagtaagaa gtgcggctaa
    18241 ggcttcgctt ttatcatcgc ttacattttc aagtttggtt tttgtgtcag aaagttctac
    18301 tataatgcgt tttgcacttt ttggacctat tccaggtact tttttaagca cgctttcatc
    18361 gcccaaactt aacgctttgt aaaaagaatt tacatcaaga ctagagcata ccgccatagc
    18421 agtatttgca cccactccat tgacttttaa aagcatttca aacatttttt gttcatcttt
    18481 atccaagaag ccataaaatt tattagaatc ttctttgatg atttgagtga taaaaaactc
    18541 atgcttttct tgggtttgaa ttttagcaga acaaaaaaga gaaataaata tcccatagct
    18601 taaaccacta gcacatttaa caatgataaa agtaggttct ttttttgtga ttattccttc
    18661 gatgccgaca accatgctat atccttttct tcataatcta attttttatg tatttctata
    18721 ctttcttggt tgttttgtat gactttttta atgcctataa atttagcact ttcattaaca
    18781 aatgaagagt aaaaaatatc ttctttaggc tctagaagtg aaaatttgat ttcattcata
    18841 tcagtccatt tgccgctttt atttataaaa gttgcttcaa aaagcatttt ttgcaaattg
    18901 attaattcta attgtaaaga ttttttgcgt tcaagaagtt ctttttcttc attttgtagt
    18961 ttatttaatt caagattttg taaagagaaa tcttttaggg ctttttcgta ttgtacagga
    19021 acattttgac cttgattttt aagttctgtt atcttttttt caacgcttaa aattccattt
    19081 ttgcttgata aaatgtattg tcttatttta tttattttat gatttaactt agaaatttgc
    19141 tctcctaaaa tcgcaaattc ttcatcataa tttttatcaa gagttttaat tttagcatga
    19201 aatttattgt tatccccgtt aatgcgttct attgtggtgt tttcaaaaaa cacacaagaa
    19261 ttattacttt ctaaattttc tatatagatt ttatcagctt gtatatttcc gcctaaactt
    19321 tttttaattc tcacttcttt ggctttgatt gttccacctt cgagcaaatc tatatttaaa
    19381 atttcggctt ccgcaaatcc tctatgagtt tttatatagg cttgtttggc ttgaattttg
    19441 gctttagagt gtgtagtgcc ttcaattttc attttagtgg cattaagttg agtgttgctt
    19501 cctacgcttc cgactacatt taattcttca cattctatcc caacaccaga atttacagca
    19561 tcttttactt ctgaaagaaa ttttatattg attttgacat ttttgtctag tccagctctt
    19621 ataatcccta tatttttaaa atctacccca ttaaaatcta gttcattggc aatatcaaat
    19681 ttttcaccat cttgtactac ataacctttt tttaaagcta tatattctgt gtatccatct
    19741 tgctctactt gtttaaaagc cgaagaacaa gaaaatttaa ctttattttc atttgcggct
    19801 aaaactttta aggtgtgtaa atttaagtct tttccttctt taccttgttt aaatttggcg
    19861 tgttttaaaa caacttcatt ttcatcaaca acaataatac ctgagcgttt ttcatcgata
    19921 gtgtagtttt tggttttttc tttataagtc aagatcaggg attcatcttg actttctata
    19981 ggatcaatac cttgtgcaac ggtgatttgt atagttttat ttaaaggggt gtttttatgt
    20041 tgattgcaaa aagacattaa atttttctta aaatcaaaaa tgcggatacc tattaaaaat
    20101 ttaagtttca acatcttttt ataaatattt tgcaaaagtt ctagtgctag tttttcatga
    20161 aagtctaaat ttgtaaaatc aatttgagca actattttgg ttaaattttt atttgcaacc
    20221 agtttgactg cttgagatgc tttgctttgg tttataccgt ggaaaatttc tattttgtat
    20281 tcttgcttga tttgaagatc attttttaaa aaaatttcat ctttatcaaa aagagttaat
    20341 tctttttcag agattttttc ccattctaaa tctccaaaac gatattgtgt agaaaatgcc
    20401 aataaactaa aatcaagctc atttaagcta aggtttgttc gtgaagctac gcttaaaagc
    20461 tctcgagctg gattttctgt ataggcaata attttttcat ccaaagccaa aactttcccc
    20521 ttgtaaaaaa ttaagaatgt aattatagtc aatttttaat caattttagt taaaatagtt
    20581 ctctttatat tttgaaattt atgaaaaaat ttaatgaaga gtttagtatt taaaaatttt
    20641 attatcaatg ctttaggaat tttattttca agaattttag ggcttgctag agatgtttta
    20701 atagcgcttt ttttaggagc agggctttat agtgatattt tttttgtggc tttaaaaatg
    20761 cctgcttttt ttagaagaat ttttgcagaa ggggcttttg gacaaagttt tttgcctaat
    20821 tttgtaaaag cg
//
LOCUS       DAZAND010000017        20262 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.017, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000017 DAZAND010000000
VERSION     DAZAND010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20262
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.017"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            25..327
                     /locus_tag="ACHDOB_000498"
     CDS             25..327
                     /locus_tag="ACHDOB_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFN3325439.1"
                     /translation="MKKLLAVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(350..556)
                     /gene="ccoS"
                     /locus_tag="ACHDOB_000499"
     CDS             complement(350..556)
                     /gene="ccoS"
                     /locus_tag="ACHDOB_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HFN3325440.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALNKKRLS"
     gene            complement(553..2910)
                     /locus_tag="ACHDOB_000500"
     CDS             complement(553..2910)
                     /locus_tag="ACHDOB_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HFN3325441.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKFFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLSHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGLFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFAPKKVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGESIPKLIQKEDEIFSACMVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLSAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKVLDLNELYNFVKLSKHPISQNIASYLKQKGAKDLNLNFKKHSSIQAKGLS
                     AELNEELLLGGSSKFLQEKSIATKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIARKLEIQNYQASCLPEDKMKAIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            3020..4318
                     /gene="rho"
                     /locus_tag="ACHDOB_000501"
     CDS             3020..4318
                     /gene="rho"
                     /locus_tag="ACHDOB_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HFN3325442.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IRKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            4322..5851
                     /locus_tag="ACHDOB_000502"
     CDS             4322..5851
                     /locus_tag="ACHDOB_000502"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HFN3325443.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSILIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENTTNITPRITPAPIIPNLEKKIEKNAYEILLDSIYDRDFDLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(5848..6369)
                     /locus_tag="ACHDOB_000503"
     CDS             complement(5848..6369)
                     /locus_tag="ACHDOB_000503"
                     /inference="COORDINATES: protein motif:HMM:NF021453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HFN3325444.1"
                     /translation="MQQKCFCISKMIRFSKIIILLTVASLAGIVVFGNVTDYNSNFQF
                     VSHVMSMDTKPDYLGNAIVYRAITSPVIHHIGYIAIILFETFITLTALKGAYDMFKAR
                     NLDAQSFHNAKIFGIISLTCCCILWFFAFQVVAAEWFGMWMSKVWNGLPDATRLVTYM
                     FLALIFISLKNDD"
     gene            complement(6441..8540)
                     /gene="copA"
                     /locus_tag="ACHDOB_000504"
     CDS             complement(6441..8540)
                     /gene="copA"
                     /locus_tag="ACHDOB_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HFN3325445.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQEKRKDIIAKIKNLGFEILEDEQSLNAYKVKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGLKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGTLRIKANKKAMDSTLEQIKNLVFEAGNIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWALKADLNTAFLHACAVLLISCPCALGLATPIALVVASSNAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDQIFDLKGEGRVIVGSGIKYKEDSDIYLAGSAKFLHENEIDTKESDIFFDTFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFYAQLKSEEKLRIIQKFKKTLFVGDGINDAAALSAATVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRSIIKLNLFWAFIYNVLCIPIAAGFVPFITLSPHIAALAM
                     CFSSITVVLNSLRLKRI"
     gene            complement(8540..8734)
                     /locus_tag="ACHDOB_000505"
     CDS             complement(8540..8734)
                     /locus_tag="ACHDOB_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HFN3325446.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIIERL"
     gene            complement(8724..9674)
                     /gene="czcD"
                     /locus_tag="ACHDOB_000506"
     CDS             complement(8724..9674)
                     /gene="czcD"
                     /locus_tag="ACHDOB_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HFN3325447.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSGIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCDLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(9748..10011)
                     /locus_tag="ACHDOB_000507"
     CDS             complement(9748..10011)
                     /locus_tag="ACHDOB_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HFN3325448.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQASRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(10082..10576)
                     /locus_tag="ACHDOB_000508"
     CDS             complement(10082..10576)
                     /locus_tag="ACHDOB_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HFN3325449.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIALAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(10573..11349)
                     /locus_tag="ACHDOB_000509"
     CDS             complement(10573..11349)
                     /locus_tag="ACHDOB_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HFN3325450.1"
                     /translation="MEKPDIQRLTNFLIIYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KAKVVFEQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVGILICCIALGIYMTLSISDFGILR"
     gene            11416..12342
                     /locus_tag="ACHDOB_000510"
     CDS             11416..12342
                     /locus_tag="ACHDOB_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HFN3325451.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVIQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELKNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKLLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQKLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(12339..12941)
                     /locus_tag="ACHDOB_000511"
     CDS             complement(12339..12941)
                     /locus_tag="ACHDOB_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFN3325452.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEAKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(13022..13249)
                     /locus_tag="ACHDOB_000512"
     CDS             complement(13022..13249)
                     /locus_tag="ACHDOB_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325453.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(13260..14711)
                     /locus_tag="ACHDOB_000513"
     CDS             complement(13260..14711)
                     /locus_tag="ACHDOB_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HFN3325454.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINNKTKFYGRLSMAKNWSQMGWSGSPYDLDAGRNTRSSGP
                     VLYVDRAYLDYYITPEWIATVGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLILFNIAYLSDFALPLNNGPIALPGTGSGATTILDDDGVVNLGDLTIANLHFENY
                     KAFGTNFNYFLSLGYSHGNNNQLSPTLSAIIKRQGYGNGKFNEEDGYAVHVGGRYDFT
                     KALKVGYEFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTN
                     IQNIWGNRGLPFGGAKKDKARADNIMLMYNVKF"
     gene            complement(14867..15349)
                     /locus_tag="ACHDOB_000514"
     CDS             complement(14867..15349)
                     /locus_tag="ACHDOB_000514"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFN3325455.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(15359..16066)
                     /locus_tag="ACHDOB_000515"
     CDS             complement(15359..16066)
                     /locus_tag="ACHDOB_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HFN3325456.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIEAKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEEDDDVQAVYTNID"
     gene            16175..16516
                     /locus_tag="ACHDOB_000516"
     CDS             16175..16516
                     /locus_tag="ACHDOB_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HFN3325457.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIVLSIVG
                     IIMINIGEVKE"
     gene            16516..16824
                     /locus_tag="ACHDOB_000517"
     CDS             16516..16824
                     /locus_tag="ACHDOB_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HFN3325458.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKNKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(16842..18434)
                     /gene="argS"
                     /locus_tag="ACHDOB_000518"
     CDS             complement(16842..18434)
                     /gene="argS"
                     /locus_tag="ACHDOB_000518"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HFN3325459.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFAKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFDTEYYVNDAGNQIYLL
                     GLSILLSVKENILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSQENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAILNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(18446..18685)
                     /gene="tatA"
                     /locus_tag="ACHDOB_000519"
     CDS             complement(18446..18685)
                     /gene="tatA"
                     /locus_tag="ACHDOB_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HFN3325460.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNTDASIDETKKA"
     gene            complement(18687..19304)
                     /gene="gmk"
                     /locus_tag="ACHDOB_000520"
     CDS             complement(18687..19304)
                     /gene="gmk"
                     /locus_tag="ACHDOB_000520"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006163 - purine nucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HFN3325461.1"
                     /translation="MQGFILLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKPRE
                     GEKNGIHYHFISHEEFQKGIDGDHFLEWAKVHENFYGTSLKHTQDALDNGKIVVFDID
                     VQGFKIARQKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKELS
                     DYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(19307..>20262)
                     /locus_tag="ACHDOB_000521"
     CDS             complement(19307..>20262)
                     /locus_tag="ACHDOB_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HFN3325462.1"
                     /translation="KEDDKNEEIEKQELLNDSKANTLEMQEELNESQDDNANKALETQ
                     NLEDENLEQETTKEQTQEDIQTDLDLTLEDGGSQKEDLSQEHTALDTEPSLDELDDKN
                     DEDLEDNKELQANISDFDDLPVVEEQEKEMDFDDIPEDAEFLGQAKDNEESEENLEEF
                     SPVVEEDVQDEMDDFISNLSTQDQIKEELAQLDELDYGIDSDNSSKVLEDFKDEPILD
                     DTELGTNEEEVVVPNLNISDFDALKESDIQEALGEEIVEKNEEPIVSNATKDDNSEEI
                     VNELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
BASE COUNT         7054 a         3678 c         2686 g         6844 t
ORIGIN      
        1 taatttttac taaggagaaa acaaatgaaa aaattattag cagtttctgc tttggcatgt
       61 cttggtgttt ctgcttttgc tgcagatggt gctacacttt ttaaaaaatg tgcagtatgt
      121 catggtgcaa atgctgacaa agtttactta aacaaagttc cagctttaaa aactctttct
      181 tctgctgaaa gacttcaata catgaaagaa tattcagaag gcaaaagaaa tgcttatggt
      241 caaggtgcga tcatgaaact taaccttaaa ggtttaactg aagaagattt taaagctatc
      301 gaagctcata ttgaaacttt aaaataattt ctaaaaaagg cttttctttt taagaaagcc
      361 tttttttatt caaagcttct tttttacgcc tttctaattc tatagcatca cgtaaagaat
      421 cctcatcatc atttaaagta gtaaatttat aatcatcatc aaattgttta ttcttaatcc
      481 cccaaagcaa agttgccaaa atgataaaaa acgctaagat agaaactcct atcatcatca
      541 tgattatact attcattctt tgatccttaa agcatttaaa acgactatta tactactaaa
      601 agacatagaa atagcagcaa ataaaggatt aatcatacct aaaaaagcca aaggtatggt
      661 acaagcatta tagaacaaag aaaaagcaag gttttgcttg ataattttaa aggtgttttt
      721 agataatttg atggcttttt ttaaagaaag caagtcattt ttcaaaagca aaacatcgct
      781 actttctata gctagatcac ttccttctct taaagtcatc gaaacacttg catattttaa
      841 agctagagcg tcatttaccc catcacctac aaataaaact ttgtaatttt tgcttaaatt
      901 ttctatagct ttcatcttat cctcgggtag acaagaagct tgataatttt gaatttctaa
      961 ctttctagcg attttttcca ctgctttttg atgatcgcca ctaagtatca ttaattcttt
     1021 cttttctttt ttaagataag cgataagctc ttttgcacct tctcttaaaa cactatcaaa
     1081 ctcaaaaaaa gctaaaattt taccttcctt agcaaaaata aaatgagtat tatcaaattc
     1141 cttagttgca atactctttt cttgcaaaaa tttagaactt ccgcctaaaa gcaactcttc
     1201 atttaactca gcacttaaac ctttagcttg aatacttgaa tgctttttaa aattcaaatt
     1261 taaatcctta gctccttttt gctttaaata cgacgcaata ttttgagata taggatgttt
     1321 agaaagtttt acaaaattat aaagctcatt taaatcaagc actttatcta aaaaaacctc
     1381 tttaagttca agctctattt tagttaaaat acctgtttta tcaaacacca cacaatcaca
     1441 tttgcttaaa tcttctatca cactagaact tttaaataaa atatgctttt ttaaagccct
     1501 acctaaggcc acaagattgc tcacgggcgt tgctaaagcc aaagcacaag gacaagcgat
     1561 aatcaaaact gcaatcgcat tgactaaaga aatttcaaaa ctctcttctt tgtaaaaaaa
     1621 ccaaaaagca aaacaaataa aagcgatcaa taaaaccgtt ctagaaaaat aagccgaaag
     1681 actattaacc aaactttcaa gttttgcttt tttagaactt gcaagttcta aaagctgaat
     1741 aatttgactg agttttgaat ccttataaag ctttgttgct tcatactcca cacttccatc
     1801 aagcaccata caagctgaaa aaatttcatc ttctttttgt atgagttttg gaatactttc
     1861 tccatttaaa gaagaagtat ccacactcat ttcaccactt ttacaaatcc catcgattaa
     1921 aattttatct ccagttttaa gcaaaattct atcccctaaa caaacctttt gaactttttt
     1981 aggagcaaat tctttaccat tgaaaactaa aacttcattt tgtaaaaaat cattaagccc
     2041 atctatggta tctaaagcac gctttttgct aaacatctca agatattttc ctataaacac
     2101 aaagcaaatt atcatcgcca cagaatcaaa atacacttcc cccaccctaa aaaacatagc
     2161 ccataaagaa taaacataag ccaaactcgc tccgctaatc accaatacat ccatatttaa
     2221 actatgcatt tttaaagttt taaaagcact tttataaaaa tgagagcccg tataaaaaag
     2281 cacaggagaa caaaggataa attcagcaaa atttaaaata tccttagtat ccttatccat
     2341 accgctaaaa agtcctgcgt attttgccac tgctatccac atgatattca tcacacaagc
     2401 tatagctacg acaagcttag aataaaattc cctttttaat aaatccgctt tttttgaagc
     2461 cttgctcgca tcataagcac tcgctttata gcctatactt tcaataagtc ttaaaatttg
     2521 caccaaagaa atgctttgtt catcaaaaac aatgcgtgct ttatggctta aatgattgat
     2581 atcaagttct aaaattcctt cttgcttggt taaaattttc tcattaagcc acacacaagc
     2641 tgcacattct ataccgtgta tcatgagata aatttcacta aatccttctt tggttttagt
     2701 gataaactca tcataatttt tcatttcatt ttgaaaattt acagggctta gggtttgatt
     2761 tccaagcttt tcataaaact catctagtcc actttcatgt aaaatttccc aaacgctctc
     2821 acaaccctta caacaaaaaa atttaccctt atactctatc atttgagctt gtttataatc
     2881 aagtttgcaa tgttcacatt tcataatcat tctttaaaaa aatatttttt ataattataa
     2941 acaaaatttg acaaaaagtg cattttttta ctaaaatcac attttacaaa aattattctg
     3001 ctaaatctta cgaggactta tggaaaaaga aaaaaaacaa catcaaagaa cccacgttcc
     3061 agtggaaggt tataaaatcg aagaattaaa attattagat ctagaaaatc tagttaaaat
     3121 cgctaatgaa tgtgaaatcg aaaacccaag agaatttcgc cgtcaagaac ttatttttga
     3181 aattttaaaa gcacaaacaa aaaaaggcgg ttttatactt tttacaggga ttttagaaat
     3241 ttcttccgaa ggttatggct ttttaagagg tatggactct aatcttagcg atagtgttaa
     3301 tgacgcttat gtttcaaatt cacaaattag aaaatttgct ctgcgtgtag gcgatatcgt
     3361 tacaggacaa gttagagaac ctaaagatca agaaaaatac tatgctcttt taaaaatcga
     3421 agcgatcaat tatctgcctt tacaagaagc caaagaaaga cctttatttg ataacttaac
     3481 ccctattttt ccaacggaaa aaatcaaact cgaatacgat gcgatgaagc ttacgggtcg
     3541 tgttttagat ctttttaccc ctataggaaa aggacaacgt gggctcatcg ttgctccacc
     3601 acgcacaggt aaaacagaac ttatgaaaga acttgctact gctattgcaa aaaaccatcc
     3661 tgaaatgcat ttaattgtgc ttttagttga tgaaagacct gaagaagtta ccgatatgca
     3721 aagatgtgta aaaggcgaag tttttagctc tacttttgat ttacctgctt ataaccatgt
     3781 gcgtgtagct gaactcgtaa tagaaaaagc caaaagaatg gtagaaacag gaaaagatgt
     3841 tattatcctg cttgatagca tcacaagact ggcacgtgct tacaacaccg caactccaag
     3901 cagtggaaaa gtcctaagcg gcggggtgga tgctaatgcc ctacacaaac caaaacgttt
     3961 ctttggtgca gctagaaata tagaaaatgg aggctcttta accatagttg ctacagcttt
     4021 aattgacaca ggttcaagaa tggatgatgt gatttttgaa gaatttaaag gcacaggaaa
     4081 tagcgaaata gttcttgata gaaatatcgc tgatagaaga atttatcctg caattaatat
     4141 catcaaatca ggaacaagaa aagaagaatt actccaaggc gtggcaaatc ttcaaaaaat
     4201 ttgggcgatc cgttcagcga tttctcaaat ggatgatgtt gaagcgttga aatttttata
     4261 ttctaaaatg cttaaaacca aagacaatgt agaactttta tctataatga acgagtaaaa
     4321 aatgcttcaa gctttagcga ttaaatacag gccaaaaacc tttgatgaac tcataggaca
     4381 aaaaacagtt agtgtaagtt taaaatacgc cctaaatcat aatcgcttag ctcatgctta
     4441 tcttttttcg ggacttagag gaagtggaaa aacttcaagt gctagaattt tttctcgtgc
     4501 tttagtttgc gaacaaggac caagcgatac tccatgtggc acttgcaaac actgtcttgc
     4561 agcacttgaa ggcaaacata tagacattat agaaatggat gctgcaagta accgtgggct
     4621 tgaagatata caagccttaa tcgaacaaac caaatacacc ccttctatgg caagatttaa
     4681 aattttcatc attgatgaag tacatatgct taccccacag gctgcaaatg cacttttaaa
     4741 aaccttagaa gaacccccaa gttatgttaa atttatactt gcaaccacag atcctttaaa
     4801 acttccagct actgtgcttt caagaacgca acattttcgc tttaaacaaa ttccacagag
     4861 tgaaatttta aatcatctta aagaaatttt acttaaagaa aatgttaaat ttgaagaaga
     4921 agctttaaaa tttatagcaa gaagtggcaa tggatcttta agagatactt taaccttgct
     4981 tgatcaagcc attatttttt gccaaaatga aatcagcatt agcaagatta ccgatatgtt
     5041 aggcttttta gatcctcaaa aaatcaaagc cttttatcag gctatcttaa caaaagacaa
     5101 ggaaaaagtt tttgcatact tagaagaatt acaagactat gaagcctcaa gcgtgattga
     5161 tgaaatgctt ttttatttaa aagaaagctt ttttgcaaaa agtacagaat tttctatttt
     5221 aatttatgaa agatttttcc gtattttatc aaaagctaaa aatatgcttt gcgatgatga
     5281 tggctttacg ctttgtgtta tggcttttat gatgatggaa gcaagccatt taaaagaaat
     5341 tgatgcacaa atccaagaaa tcaaacaaga aaatacaaca aatattacac ctaggatcac
     5401 acctgctcct atcataccta atcttgagaa aaaaatagaa aaaaatgctt atgaaatctt
     5461 gcttgatagt atttatgata gggattttga tcttgcagaa tgctttaaac aaagcacaaa
     5521 atttattagt tttgaaaaca ataccttaaa tataagctca aacgcacaag gacaaaatcg
     5581 cgatacactc aataaaggtt ttaaactcat acaagaactt tttaaagcta aatttggaga
     5641 aaatgctaaa attaatgtgc aaaaagcact aacaattgat gaaaataagc ttcaatcctt
     5701 aactcaagaa ttaccaaaca atgaaaataa aaacatagat attcaaagtt ctattaatat
     5761 gcttaaagaa ggggccaaaa aatttgaccc acaagaagat cttaaagagg ctcttaaaga
     5821 ttgttttgga gagcctagta tagaaaatta atcatcgttt ttaagagaga tgaaaatcaa
     5881 agctaaaaac atataagtta ccaatcttgt agcatcaggt aaaccgttcc aaactttgct
     5941 catccacatt ccaaaccatt ctgcagcaac tacttggaag gcaaaaaacc ataaaataca
     6001 acaacaagtt aaagaaataa tcccaaaaat cttagcatta tgaaagcttt gggcatctaa
     6061 atttctagct ttaaacatat cataagcacc ttttagagct gttaaggtaa taaaagtttc
     6121 aaaaagaata attgctatat agcctatatg atgaatcaca ggagaagtaa tagccctata
     6181 aactatagca ttacccaaat aatcaggctt tgtatccata ctcatcacat gcgaaacaaa
     6241 ttggaaatta gaattgtaat ctgtcacatt tccaaaaacc actatacctg ctaacgatgc
     6301 aacggtaagc aaaataataa tttttgaaaa tctaatcatt ttgcttatgc aaaaacattt
     6361 ttgttgcatt tatactcctt taataatata ttttggtaat attaattata tataatatat
     6421 tattaataaa aattaaattt ttaaattctt ttaagtctta aagaattaag caccacggta
     6481 atagagctaa aacacattgc aagtgctgct atatgaggac ttaaagtgat aaaaggtaca
     6541 aatcctgccg cgataggaat gcaaagcaca ttataaataa aagcccaaaa aagatttagc
     6601 ttaataatac tgcgtgtttt tttagcaagt ttaaaacatt taaaaatcgc cgataaatca
     6661 tcttttatca agataaaatc tcctgttttt tttgcaagtt catttgcttt tgaaaaactc
     6721 atactcacag ttgcggcaga taaagccgcc gcatcattga tcccatctcc tacaaaaaga
     6781 gtttttttaa atttttgaat gattcgtagt ttttcttcac tcttaagttg agcataaaat
     6841 tcgtctattt gtaattcttt ggctattttt tctacatttt ttacatgatc gccgcttaaa
     6901 ataaaagttt taagattttg cttttttaaa tttaacacaa gctctttggc tccatctttt
     6961 aaagcattgc ttaacaaaac accgcctaaa cactttttat tcttagcaaa atacacccta
     7021 acatattctt taaaagtatc aaaaaagata tcactttctt ttgtgtcaat ttcattttcg
     7081 tgcaaaaact tcgcactacc tgcgagataa atatcactat cttctttgta ttttatacca
     7141 gaacccacaa tcactcttcc ctcacccttt aaatcaaaaa tttgatcttt atgcaaagcc
     7201 ttagctatag gatgagagct taaactttca atttgacata atttatcaaa atcatcttta
     7261 gaaagattgt gtttaaaaat actcaaattt tcctttgtca atgtacccgt tttatcaaaa
     7321 aaagcatact taactaaggc taatttttct aaagcggcag gatttttaat aagaatgaaa
     7381 ttttttgccg catttgaact tgccacaacc aaagctatag gtgttgcaag ccctaaagca
     7441 caaggacaag agatcaaaag cacagcacaa gcgtgtaaaa aagctgtatt taaatctgct
     7501 tttagcgccc aaaaaacaaa aactaaaaaa gcaaaaaata ttataccccc tacaaaatat
     7561 ttagaaattt gatctgctaa atttgccaaa ggacttttga tatttcctgc ttcaaaaact
     7621 agatttttga tttgttctaa agtactatcc atagcctttt tgtttgcttt gatccttaaa
     7681 gtaccattta aaactactgc tcctgcttga acttcgtcgc cttctttttt taaaacaggc
     7741 aaaaactccc catttaaaaa actcatatca agctctgcac tccctaaaag caccactcca
     7801 tctgcgacaa tgctttctcc ttcttttacc aaaagcacat cgccactttt gacaaaagaa
     7861 cttgaaattt ctttgatact ttcatcttca agcaaaattt ttgtcttttt tgtgtctata
     7921 ttttctaaaa ttctttgata atcttgtgct ttaaatttag ccttactttc aagatatttt
     7981 cctaaaagca caaaagaaat aatcatcatt gcaccgctaa aatacaaatc ttcttcttta
     8041 aaaatttgca aatacaccaa aaaagaatac acaaaagcac tcaaagtccc caaagctaca
     8101 agggtgttca tatctaaatt tttactttta agtcctaaaa aagcatgaga aaaaaagtct
     8161 ctcccacaat aaaatatccc aaaaaaactc aaagccattt ggatattttg cgaaaaagaa
     8221 cttttaacaa acatttcaaa atacataata atcacactca aaactatact taagagcaaa
     8281 ttttttctta attctaagtg tttttttacc ttgtatgcgt ttaagctttg ttcatcttct
     8341 aaaatttcaa agcctaaatt tttaattttt gcgatgatat ctttgcgttt ttcttgatct
     8401 tcaagtaaaa aaaccccact agaattcaca taagaaacac tagcatcttt aacaccatca
     8461 atttttttac aagctctttc tatagcatta gaacaattaa cgcaagtcat tttgcctatt
     8521 tttatacgca attcttccat tataaacgct ctatgatctc aaaacctaaa tcttgaaatt
     8581 cttttgtaaa atttgatact tgattttctt ctaaatttaa acttaaaatt ttttgctcca
     8641 aatccacttc tatatttcca aattcatctt caagagaatt tttgatcaaa tttacacaat
     8701 tcatgcaatt aacatttttt actttaaatt tcattttcgc tccttatagg ttgtatagta
     8761 atgtgcccga tttcaaattc atgtagtaat ttatgggata aatcctgaga tagtttttca
     8821 aattccttta gatcgcaaac tcttactttt aaatgcatgg aagctactaa cattttattg
     8881 gtaatttgag taatatgcaa atccaccacc tcatccacac taggatttaa aagcaaaact
     8941 tgtcttactt tttctatatc cacaggagaa ctttcaagca agacattagc actttgttta
     9001 agcaagataa tcgcccatct taaaagcaag attgataata caatagctaa aatcgtatct
     9061 atataaacaa taccactaaa atacaccaca atcccaccta taataaccgc taaagagccc
     9121 aataaatcac tcatcatatg caaaaaagcg gacttcatat tgacattttc taaatttgca
     9181 cccttaaaca tcatcaaagc attaatccca tttaccaaaa agcccaaaat agctacaatt
     9241 atcatggttt tagcatcaat ttcttttgga ttaataaatt tttctatagc ctcataaatg
     9301 ataaataaag ccgataaaat aatggttaaa gcattgataa aagccactaa aacttcaaga
     9361 cgaaaatacc caaaggtctt ttgatgatct tgccattttt ctacagctat aatggctaaa
     9421 aaactaagag ctaaggcaaa aacatcagaa aacatatgca aagtatcgct taaaagtgct
     9481 aaagaatttg aaaggattga ataaataaat tgcacaagca tcatagaaaa agtcattaaa
     9541 agagaaattt ttaaaatctt tttatccaca ctccttgcat cagcatggga atgatgatgt
     9601 tcatgagaat gttcttcgtg attatgatga caagatttgt tagctaaagg ctcgtgtgat
     9661 aaaaatttat acatcttata tcctttttgc ttgacatttt aagatattaa gctaaaaagg
     9721 atataaatat ttgttatttt tataaaatta aaagtcaaaa agctcgccta gccaactttc
     9781 tttctttttc tttttatagt agtcattgtg ctgatgataa gctgagtcat tatatcttga
     9841 ctcttgtctt gaagcttggt taaaatttgc tgtattaggg acactgcgtt ctatgatttt
     9901 gtcaagttct ccacgatcaa gccaaacgcc acgacacttt ggacaataat caatctcaac
     9961 tccactccta tcactcataa ccaaatctac attacaaact ggacataaca tacaatacct
    10021 ttttttaaaa tttttaattt aaaattataa aaagaaatat taaacaaatt tgcaacaagt
    10081 tttaatgttt ttttgcatgt ctagtcatca taaaactttg ttcaaaaaat ataagcaaag
    10141 taacactcac tcctatagct agagccaaag tcacagaaac agttgtaaaa aaataatcaa
    10201 aaaattgaac caaaaattca gacttagcct tcaaatcatc actgcgtata aaagaaataa
    10261 gatacaaaat cgctttataa gcgtaaattc caggtatcat aggaataaga gcaggaaaag
    10321 cgataatttc agcaggggtt ttaatgattt ttgctaaagc aattcctaaa catcctatgc
    10381 aaaatgaagc aacaaaagtt gcaattgcta aagtttgaaa atgaaaatat tccaccaaag
    10441 taaaacgaag cccatgtgca attgctgcta aaagagcaga taaaataagg gtttttaaag
    10501 gtgggttgca agcataagca aaaccaaatc ccgccacagc agcaaaaaac atatctctta
    10561 aaataaattc aatcatctta aaatcccaaa atccgaaata ctaagcgtca tgtaaattcc
    10621 aagcgctata caacaaatca aaatccctac actgataata cgactaagtc ccattaaaat
    10681 atgatctttt aatatatcaa tcacagaatt tataaaaaat acccctggta taagatacaa
    10741 gatactagaa cccaaagcca catcagaagt attggtatat cccatatcca gcccaaaaaa
    10801 tacaaaccac gatgagataa aagaacaaag aatatattga attcttaaat caatctttgc
    10861 tttagttaaa atatatctta ataacaatcc cacaaatgtt gcaaaaaata ctaaatttcc
    10921 agcaccaaaa tcaccaccaa aaagtctaca aaaagccgaa tttgccatag aaacaaataa
    10981 aagattaagc aaataagaat gctttttttg ttgagaaatt tgctcaaaaa cgactttcgc
    11041 tttttcaaga tcgtatttgt gatcatatat agcccagctt aaagcactta aatcaaaaat
    11101 aagcttaaaa ttaacatggg catgatgatt gggtataaca taagttcttt gaatggagtt
    11161 atcatccata tctacaacat ttaaagtgat atgatgaaaa aagaaattga tatttatctc
    11221 atagccataa acctcagcta ttcttcctac gcattttgcc accctagctg tataagttcc
    11281 agcacctagc aaagttttag tatatatgat taaaaaatta gttaatcttt gtatatcagg
    11341 tttttccata ttttaataat ctttgattga atttgttata attatagcaa attttaaaat
    11401 aaataaggag aaaaaatggc aaaaatcggt atagttggtt taggttatgt aggagctgct
    11461 agtgcttata gcatagttat tcaaggaatt tgttcagaac tttacttata tgatataaaa
    11521 caagatttag ctctagctca tgcaagagat ttggaagata tgtcagccat tcatttttct
    11581 tatacaaaaa tttttcatgt gccaaattta gaaaatttag cttcttgcga tattatcatt
    11641 ttagctttta gaaaagaaag cttaaaagaa ttacctagtc gcttagtaga acttaaaaac
    11701 aatatcctcg aacttaaaga cattgtctta accttaaaaa atgctaattt taaaggcaaa
    11761 tacattgtcg caacaaatcc aaatgacacc ataacttact acactcaagt attaagccaa
    11821 ttacctaaaa atcatgtttt tggtagtgga acaaatttgg atagttcaag acttaagaaa
    11881 ttgttagcca aagatttaaa cataaattca aaagatattt ttgcttgtat gattggtgaa
    11941 catggagatt ctcagtttgc agcactttct aatgcaagcg ttttaggaca aaatttatta
    12001 gatttttata agcaaaaatt aggcaaagat ttagacatac aagaactcga aaaagccgtg
    12061 attagcgagg gatatttcat ctatgaacgc aaaggaagga cagaatttgg cataggaact
    12121 tcttgtgcaa atttagccaa agccatccta gaagatagaa aaagtttaca tcctgtaagt
    12181 gtggtttttg atgatatagc tttttcaatg cccgctatca taggaaaaga tggtatagaa
    12241 aaggtttttg aattaaaatt caatgaaaaa gaaaaaataa aattagaaaa ttcaaaacaa
    12301 caaatcaaaa acgccataca aagcgtaaaa gataaaattt aagccttttt aaaaggcttt
    12361 ttgattttaa tataaattaa acttgctaaa atcacaaaaa caattataat aattaaaatt
    12421 tgagttaaat aagttttaat caactcttca ttttgtccta tataataacc caaaaataca
    12481 agtatagcca cccaaatagc actaccaagt gcagtaaaaa gtataaaatt tacaagtttc
    12541 atttttacca aacctgcagg catagagatg tactgacgaa tccctggtaa aagacgacaa
    12601 gtaaaggttg aaaattcccc atgtttgttg aaaaattctt caaatttagc aaatttggct
    12661 tcgtttatac caaaatactt accccatttt aatacaaaat ttttacccca aaaaaagcaa
    12721 atataataat taatcaaagc ccctaaaaca gaacctaaag tcccactaag tatacaaaga
    12781 gtgatatcaa gttcgccttt atgtgccaaa tatccagcag gtatcataac aacttcactt
    12841 ggaaaaggta taaaacaact ctctaaggtc attaagataa taatacccaa atacccccaa
    12901 gcactagccg tctcaacaat aaaagaaatg atttcttgca tattagcctt atttgaagaa
    12961 aattttaaaa aattgtagct taaaagatta aacagtaaaa agcggtttta taccgctttt
    13021 tttatttacc tgcaactgaa acttgatttg gattgtccgc tgcacgagcg atcatacact
    13081 cttttaaaac agcagcatca gctggatcgc taactttttt attaatccag cgttcaactt
    13141 gtttcattgt ttttgactct ggctctggag cttcgtattt tgccatcaaa cttgcacaat
    13201 cagccaaagc aatgataggt aataaacttg caaaaagtat ttttctcatc ttttgctcct
    13261 tagaatttta cattatacat taacatgata ttatcagctc ttgctttatc ttttttcgct
    13321 ccaccaaatg gtaagccacg attaccccaa atattttgga tattagtata gcttaagcgt
    13381 aagaattgat atctatcaag ttgataaatc acataaaaat catgtgctgt tcctcttgtc
    13441 attcttatat taagtggatc gttgatactt ggacggctca tagtatacca gtatctactt
    13501 ccccagaaga actcataccc tacttttaaa gccttggtaa aatcatagcg tccgcctaca
    13561 tgtacagcat agccatcttc ttcattaaat ttaccattac cataaccttg ccttttaata
    13621 attgcactta atgtagggct taattgattg ttgttcccgt gagaataacc taaagataga
    13681 aaataattaa aattcgttcc aaaagcttta taattttcaa aatgaagatt tgctatagtt
    13741 aaatctccta aatttaccac accatcatca tcaagaatag tagtagcacc gctaccagta
    13801 ccaggtaaag caattggacc attgttaagt ggcaaagcaa aatcgcttaa atatgcaata
    13861 ttaaataata ttaaattatc tcccatacct tctataggaa gctctccttc tactgcagca
    13921 tagtaaagat ttgcatcagc atctttttga tcgctcatcc agtctcttac cttgccttct
    13981 tcatcccatt gataggtttt accataagct gcacggatag ctaccttatg atcttgcaaa
    14041 ctttcaggct tataagtgat cactgctgca tcacctagag cattaatcgc taaggctgga
    14101 taagttgatt gtcttaaagc attgtttcta agattacttc ccggaccatc ggttcctggc
    14161 tgtcttccta cggttgcaat ccactcaggt gtgatatagt agtcaagata agctctatct
    14221 acataaagta caggcccact tgatcttgtg tttcttcctg catctaagtc ataagggctt
    14281 ccactccaac ccatttgaga ccagttttta gccatagata aacgaccata gaatttggtt
    14341 ttattattaa tatcagcatt catatttaaa tgaagctcat tcatccattt gttattagca
    14401 ctataatctt gtccgctaac tttatagttt gtatttgaaa ctgctgttga aaactcaagt
    14461 ccaaatttaa ccttgctcaa agcagcttgg aattctgttt catcggctct atcattaaga
    14521 tcagcaagtt cagcttttac agcttcattt tgcttagctt gagcttccct ttcttttctg
    14581 atttgtgcaa gttcagcttg aatttgtgca agctgttttt gaagcttggt tatctcatca
    14641 tctgtatttt tagcaaaaag tgaagatgaa agaagacaag cacttaaaat aagtgaaaac
    14701 ttagttttca taatcataac tccttgtaat tttgttacat ttagcaaatt aaaattgtga
    14761 ttatagaaaa aaaagtttaa aaaaaaatta tacattaatc atttttagct agtcaaactt
    14821 atgactagct ttgtaaatat tgtagtttta aaaaagtttt aaatttttaa attttatcgc
    14881 aaatttttat gtctaaaatt ttatctcctt ggcgtataga gtctagaact tctaaacttt
    14941 cttcatcttt tggatcaatt tgcccaaaaa cagtatgaac cccatctaaa tgagcttgag
    15001 ggctgtgaca aatgaaaaat tgagaaccac ccgtatcgcg tcctgcgtgt gccatagata
    15061 aggttccacg ctcatgttta tgctcttgat catcacattc gcaaatgatt tcatatccag
    15121 gcccacctac accattgccg tgtggacaac ctccttgtat gacaaaattt gggatcacac
    15181 gatgaaaatt taaatcttta taaaatccct cattagccaa agtagcaaaa ttacaaaccg
    15241 tttgcggagc ctcatcgcca aaaagtttta atttcattgt gcctttttca gtttctataa
    15301 gagcaaattt gtattcattt actttgcttg tgtcgattgt ttttatcatt atttctcctt
    15361 aatctatatt tgtataaaca gcttgaacat catcatcttc ttctaactta tctaaaagtt
    15421 tttctatatc gctaagctgt tcttcgctaa agcttacagg attgtttggt atatactcaa
    15481 gtcctgcttt tttaagaact aaacccttag cttctatagc agaacttagc tcaccaaagg
    15541 cagtataatc accgctaatt actaactctt cttcattttg ttctaattct tcaagccctg
    15601 catcgatcaa atcaagttct aattcttcta aatctcctgc aaatttttca agatgaaaaa
    15661 ccgcttttct agtaaacata aagcctaaag atccattttg caaaacttct ccaccatttt
    15721 tgctaaaaat ggctttaaca ttagccacgg tacgcgtagg gttatcgctc atacattcaa
    15781 ctataaccaa agctccatgt gcagcttttc cttcataatg aatgttttta atatctgcgc
    15841 tatcctttcc actcgcacgc ttaatagccg catctatatt atcttttggc atattatttg
    15901 cttttgctgt agctatagca cttcttaatt ttggattcat atcaggatca gtgccacctt
    15961 ctttagcagc tacttgtatg gctttagcaa gcttaggaaa aagcttactc attttatccc
    16021 atctagcctc tttagaagct cttcggtatt caaacgctcg tcccataaat tctcactttc
    16081 tttaaagatt tttaaactta aaagtataaa ctaaaaaggc taattaaagc tttaaatggt
    16141 atgattttac catttatttt tggggagaag ctttttgaat atcgcaaaaa aagaactttt
    16201 tgttgcttgg tttttcttga ttgctgctat tgtatttgaa gttttaggta ctagtttttt
    16261 aaaaatggaa aatcaaattt taggctatat atttatggct ttatttatag ctttttctta
    16321 tttttttatg ggcaaggcga ttaaaaaaat tcaagtaggc atagcctatg ctgtatggga
    16381 acttttaggg attattctta tacttttagt ttcttttata gtttttaaag agagtttaac
    16441 cttaactcaa attctaggca ttgttctttc tatcgttgga attatcatga ttaatatagg
    16501 cgaggttaaa gaataatgta tatttttatt attgttctat cggcattgtt agatatcgta
    16561 gcaaatttat tgctaaaaaa atcagatggt tttaagaata aaatttgggg cttagctgcg
    16621 attgtcaatg ctatacttgc tttttttcta ctttcttttt ctttaaaata tgttccttta
    16681 agcatagctt actcaacttg gggtgctata ggcatcatag gaacttgtct tggtggatgg
    16741 attttatata aagaaaaatt aaacaaaata ggaattttag gtatcattat cgtgataata
    16801 gcagtatttt tgctaaatta ttaaaacagc aaaatgctgt tttaatgttc cattttgttt
    16861 tttgcttcaa tacccattaa agaaaatgcg gttttaatac taagagcaac caaagaaaat
    16921 aatttaagta aatcattttc atttgcagag cctacaactt tattttcatt gtagaattta
    16981 tgaaaatttg cagctaaatt tttaagataa tcaggaattt tttgcaaagc tctagcctca
    17041 aaagcatcat ttaaaatagc ctttaaattc aaagcttcaa agagtaaatt tacaccatct
    17101 tgatttaaac tttgtaaatc agctttcatt acatcatcga tttttttacc agctttagca
    17161 aatacttgat gaattctagc gtgtgcatag ttgatataat acacaggatt agaactatct
    17221 tctttttgca aatcactaat atcaaattcc aaatgcgtat cgcatttttt gctcaaaaag
    17281 atataacgca aagcatcact tcctatctca tcaaccacat cgctcatcaa gataaaattt
    17341 cctgctcttt tactcatttt ataaggttct ccatctttaa gtagggaaac catttgtgct
    17401 aaaataatct caagattatt agagtcaaat cccaaaaatt ccatcgcagc tttcattcta
    17461 gggatataac catgatgatc tgctccccag atattaatac actttccata accacgactc
    17521 attttatctt tatgataaac aatatctgct gccaaataag tcccgcgtcc atcttcacgg
    17581 ataattaccc tatctttttc atcgcctttt tgcgaagaag caagccaaat tttaccttct
    17641 tgctcgtaaa ttcctttatg ctcttttaaa gattctaaag ttgcatttaa agcatcataa
    17701 tacgatcttt cgcttacata gctgtcaatt ttaatctttg cttgttctaa attttgttta
    17761 atcaaaacaa gcattttatc ttttgcccaa tcagccaaac tagggatatt ttcttggcta
    17821 aaaaattctt taccaaattt ttcaaaagct tcttttgcta aatccgctat atactcgcct
    17881 ttgtaatatt gctctggata ttcaacattt tcatgaagta tattttcttt cacacttagt
    17941 aaaatagaaa gccctagtaa ataaatttga ttacccgcat cattgacata gtattctgta
    18001 tcgaatttat agcccaaatg tcttgcaagt cttgttaagg tgtctccaaa aacagcgcct
    18061 cttgcatgtc ctatgtgtaa aggcccagta ggatttgcac tcacatattc aagcaaaaaa
    18121 ctttcttgtt ttttttctcc tttagcaaaa tcatttggat ttgttaaagc ctgatttgca
    18181 agttcattta aaaaagtttt ggaaattcta aaatttaaat acccatttac agcttcaact
    18241 gattcaaaac aatcatgatt ttgaaatttg ctcgctaagt cactagcgat caacatagga
    18301 gattttttta actccttagc cagtgaaaaa gccaaagggg tagcaaaatg tgctaaattt
    18361 ttatcctttg gattttcaag tgcaaaatca cactctaaaa tctttttaat ttcattaaaa
    18421 ataatacttt tcaaaagact aaaccttaag ctttttttgt ttcgtctata cttgcatcag
    18481 tatttgtatt attagttgtg tttttatttt cttctatttt ttgagtattt tttgctactt
    18541 catcatcatt attcatttca tctttaaaag ttttaatacc tttacctaaa ccctttgcaa
    18601 gttctggaat tttttttgct ccaaaaagca atacaacaat caataaaata atcaaccaat
    18661 gacttggact tgaccaacca cccattttat tctccttcat tccaaatatt ttgaatttgc
    18721 cctagattct gccctttggt tctaaattta tgggcaatta aaatcgctcg caatgcttca
    18781 taactttgct ttagctcatc attaatgata agataatcat agtcgctaag ttctttcatt
    18841 tcatcactag cgttttgtaa tcttttttct agttgtatta ttgtatcagt atttcgctta
    18901 ataagtcttt tttttagctc atctttattt tttgtagtaa taaaaacaga aacaatctta
    18961 tcagccattt tttgtctggc tattttaaat ccttgcacat caatatcaaa aacaactatt
    19021 tttccattat ctaaagcatc ttgagtgtgc tttaaagaag tgccataaaa attttcatgc
    19081 accttagccc attctaaaaa atgatcacca tctatacctt tttgaaattc ttcatgggat
    19141 atgaaatgat aatgtattcc atttttttca ccctctcttg gtttgcgagt tgttgaagaa
    19201 atagaaaaat aaagctcatc ttcaaattca tcaaaaagtt tttttaaaag agttgatttt
    19261 ccagctccac taggacctga aatcaacaaa ataaaacctt gcaattttaa tcctctttaa
    19321 aactaatgtt tatatttata ttcatattca tacccttaag agcagctttt aaggtatcat
    19381 ccttaatact tgaagtgatc gctcctgcta tgctttggct aagctcatta actatctctt
    19441 cactattatc atctttagtt gcattgctta ctataggctc ttcatttttt tctacaattt
    19501 cctctccaag agcttcttgt atatcacttt ctttcaatgc atcaaaatca cttatattta
    19561 aatttggcac aaccacttcc tcttcatttg ttcctaattc tgtatcgtct aaaattggct
    19621 catctttaaa atcttctaaa accttgctac tattatcact atcaatacca taatcaagct
    19681 catcaagttg agctagttct tctttgattt gatcttgagt gctcaaattt gaaataaaat
    19741 catccatttc atcttgaaca tcttcttcca caacaggaga aaactcctct aaattttcct
    19801 ctgattcttc attatctttt gcttgaccta aaaattcagc atcctcagga atatcatcaa
    19861 aatccatttc tttttcttgc tcttcaacca caggaagatc atcaaagtcg cttatattag
    19921 cttgtaattc tttgttatct tctaaatctt catcattttt atcatctagt tcgtctaaac
    19981 taggctcagt atccaaagct gtatgttctt ggcttaagtc ttctttttgg cttccgccat
    20041 cttccaaagt taaatctaaa tcagtttgaa tgtcttcttg agtctgttct ttagttgttt
    20101 cttgttctaa attttcatct tctaaatttt gagtttctaa agctttgttt gcattatcat
    20161 cttgagattc gttaagctct tcttgcattt ctaatgtatt tgctttagaa tcgtttaata
    20221 attcttgctt ttctatttct tcatttttgt catcttcttt ga
//
LOCUS       DAZAND010000018        19072 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.018, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000018 DAZAND010000000
VERSION     DAZAND010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19072)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19072)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19072
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.018"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..415
                     /gene="exbB"
                     /locus_tag="ACHDOB_000522"
     CDS             <1..415
                     /gene="exbB"
                     /locus_tag="ACHDOB_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HFN3325463.1"
                     /translation="KDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYENQEQF
                     DDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSLALKA
                     TALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            408..797
                     /gene="exbD"
                     /locus_tag="ACHDOB_000523"
     CDS             408..797
                     /gene="exbD"
                     /locus_tag="ACHDOB_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HFN3325464.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            794..1477
                     /locus_tag="ACHDOB_000524"
     CDS             794..1477
                     /locus_tag="ACHDOB_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HFN3325465.1"
                     /translation="MKTLFLNHKYQASYITFIVFIPLLFVIFHSNDFFKMEIKNEDSF
                     SLAIKQFTQTNPTNETKPTESIIEPIKPKPQPKVIKKTPEKIQKKIKKTPPHPIPNKT
                     PIAPTQEVKTFTKTTDTNVKPKITQLTQGKDNHPVLKEIQKAIQQAQFYPRQAKKMRM
                     QGTVKVEFLWKENKTLADLKIIESSGYDLLDKSALESIRKASLNFPQYNGDLRITLPI
                     IYDFKTLRG"
     gene            complement(1490..2359)
                     /locus_tag="ACHDOB_000525"
     CDS             complement(1490..2359)
                     /locus_tag="ACHDOB_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325466.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKIVFENKQGELIALNLSDENYSSLQKNFGSYTNYVARNDGSIRLNGEANQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNI
                     KEKEDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(2363..2524)
                     /locus_tag="ACHDOB_000526"
     CDS             complement(2363..2524)
                     /locus_tag="ACHDOB_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325467.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            2619..3602
                     /locus_tag="ACHDOB_000527"
     CDS             2619..3602
                     /locus_tag="ACHDOB_000527"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HFN3325468.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMIGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDNFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEAGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3688..4776)
                     /gene="aroC"
                     /locus_tag="ACHDOB_000528"
     CDS             complement(3688..4776)
                     /gene="aroC"
                     /locus_tag="ACHDOB_000528"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HFN3325469.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGIPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFGICVQSGVFGVGTFV
                     SNLKEKEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFSKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4776..5450)
                     /gene="rnc"
                     /locus_tag="ACHDOB_000529"
     CDS             complement(4776..5450)
                     /gene="rnc"
                     /locus_tag="ACHDOB_000529"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HFN3325470.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5437..5877)
                     /gene="rnhA"
                     /locus_tag="ACHDOB_000530"
     CDS             complement(5437..5877)
                     /gene="rnhA"
                     /locus_tag="ACHDOB_000530"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HFN3325471.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5864..6850)
                     /locus_tag="ACHDOB_000531"
     CDS             complement(5864..6850)
                     /locus_tag="ACHDOB_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDC27 family protein"
                     /protein_id="HFN3325472.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFANKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKEHDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6920..8737
                     /gene="dnaG"
                     /locus_tag="ACHDOB_000532"
     CDS             6920..8737
                     /gene="dnaG"
                     /locus_tag="ACHDOB_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HFN3325473.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAQKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEELNNFLKEYLSFLKY
                     EKNEEILQQSFRNLNGIFSNKNFTAYDLGFSAQDNDEPF"
     gene            8819..9091
                     /locus_tag="ACHDOB_000533"
     CDS             8819..9091
                     /locus_tag="ACHDOB_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HFN3325474.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGVVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            9078..9629
                     /locus_tag="ACHDOB_000534"
     CDS             9078..9629
                     /locus_tag="ACHDOB_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HFN3325475.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLIGFKSEIKT"
     gene            9613..10896
                     /locus_tag="ACHDOB_000535"
     CDS             9613..10896
                     /locus_tag="ACHDOB_000535"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HFN3325476.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIATNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGTIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            10900..11211
                     /locus_tag="ACHDOB_000536"
     CDS             10900..11211
                     /locus_tag="ACHDOB_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HFN3325477.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            11208..12302
                     /locus_tag="ACHDOB_000537"
     CDS             11208..12302
                     /locus_tag="ACHDOB_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HFN3325478.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNTKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDAYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            12299..13144
                     /locus_tag="ACHDOB_000538"
     CDS             12299..13144
                     /locus_tag="ACHDOB_000538"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004659 - prenyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HFN3325479.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDTHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            13154..15052
                     /gene="tkt"
                     /locus_tag="ACHDOB_000539"
     CDS             13154..15052
                     /gene="tkt"
                     /locus_tag="ACHDOB_000539"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HFN3325480.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSGKKELLERLLNPDFSKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHGMGDFIEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKLKALNEP
                     IFGDVKNGAYLLKESKDAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKTYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LINFILSK"
     gene            15054..16163
                     /locus_tag="ACHDOB_000540"
     CDS             15054..16163
                     /locus_tag="ACHDOB_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaE family lipid ABC transporter permease
                     subunit"
                     /protein_id="HFN3325481.1"
                     /translation="MNANFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNSRFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILIKFTNFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALVVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            16164..16886
                     /locus_tag="ACHDOB_000541"
     CDS             16164..16886
                     /locus_tag="ACHDOB_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325482.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGSSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNIDEEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKKFME"
     gene            16889..17779
                     /locus_tag="ACHDOB_000542"
     CDS             16889..17779
                     /locus_tag="ACHDOB_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HFN3325483.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFIQLQGGSKNSKDLVSIHGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKNIKESTMILKNFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            17779..18378
                     /locus_tag="ACHDOB_000543"
     CDS             17779..18378
                     /locus_tag="ACHDOB_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type transport auxiliary lipoprotein family
                     protein"
                     /protein_id="HFN3325484.1"
                     /translation="MLKQIFYIFTFIFILCGCSLKHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANTPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLNADYALESRINSFEQILSNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIRSTYNAFQKALNKIGNEIIFWVNSNLS"
     gene            18434..18934
                     /locus_tag="ACHDOB_000544"
     CDS             18434..18934
                     /locus_tag="ACHDOB_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FLiS export co-chaperone"
                     /protein_id="HFN3325485.1"
                     /translation="MKSDLEIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELATTITMGETMDNTGIYNSTMD
                     FKNLFK"
BASE COUNT         6978 a         2961 c         2879 g         6254 t
ORIGIN      
        1 aaaagattac atcgatttaa ttatcttttt aattctagga attatggcat ttatagcttt
       61 ttggtgtgtc gtagaaagaa tgctattttt tagaaaaatt aactttaaaa attatgagaa
      121 tcaagagcaa tttgatgatg cgattagtga aaatttaacc actatatata tcatctattc
      181 caatgctcct tatataggac ttttaggcac tgtaataggc atcatggtta cattttacga
      241 aatgggcttg gcgggtaata tagatgtcaa atctatagtc gtgggacttt ctttagctct
      301 taaagctaca gccttaggac ttttggttgc tattcctgct ttaatggctt ataatgcctt
      361 acttagaaaa gtttccctct taagcaatgc ttataaggca aataaaaatg cttaaactac
      421 caaaaaatga aggtttaaat atagttccat ttatagacat tatgcttgtt ttgcttgcta
      481 tagtgcttag tatttcaacc tttattgcgc atggaaaaat tcaaatctca cttccttcaa
      541 gtgaaaatgc taccaatata agcaataatg aaaaaaaact tcttataacc atagacgaaa
      601 aaaatacttt ttatttaaat gataaattag ctgatttaaa tgaagttcaa aatgctattt
      661 tttcacttga taaaaaaacc atagtagaac taaaaagcga taaaaatgct aaatttgaaa
      721 gctttgtaaa aattatagat tttttaaaag ccaaagaaca tgaaaatttt cagattctta
      781 ctgagaaaaa caaatgaaaa ctttattttt aaatcataaa taccaagctt cttatataac
      841 ttttatagtc tttatacctt tactttttgt catttttcac tcaaatgact tttttaaaat
      901 ggaaattaaa aatgaagatt ctttttcttt agcaataaaa caatttaccc aaactaatcc
      961 aacaaatgag actaaaccaa cagaatccat tatagaaccc atcaaaccaa aacctcagcc
     1021 aaaagttatt aaaaaaactc ctgaaaaaat tcaaaaaaag ataaaaaaaa cacctccaca
     1081 cccaatacca aataaaaccc caatagcacc aactcaagaa gttaaaactt ttacaaaaac
     1141 aactgataca aatgtcaaac ctaaaatcac ccaattaaca caaggaaaag ataatcaccc
     1201 tgtattaaaa gaaattcaaa aagctataca acaagcacaa ttttatccaa ggcaagcaaa
     1261 aaaaatgcgt atgcaaggaa ctgtaaaagt agaattttta tggaaagaaa acaaaacttt
     1321 agcagattta aaaatcatcg aaagctcagg atatgatttg ttagataaaa gtgctttaga
     1381 aagcataaga aaagcttctt taaattttcc acagtataac ggagatttaa gaattacact
     1441 acctattata tatgatttta aaaccctaag agggtaaaat tataatttgc tacactctct
     1501 tatctacaat ttgcgcttct tgattttcaa ttttattttg aaaatcttta cttaaattct
     1561 gacttaattc ttgcaaagat ttttgcttca gtttttcaaa ttcttcagga ttgctagcct
     1621 caagctttgc ctgctcatca gcacttaaag cacttaaacc tttttcttga gctttttgaa
     1681 gcaaatcttc gtcttctttt tctttgatat tattttcctt atcatctttt ttattgattt
     1741 tttgcggatc tatagttttc atagcattag ctccaccacc tgatgcttct ttaatgtcgc
     1801 ttaaaatttc tctcatgcta ggttctttaa catcactatc atcaacttta ccatctttat
     1861 ttacatcttt atcaataaaa aaatttaatt tttcttctat atttgcatca tcagatattt
     1921 tttcatcgct tgttttaaag cctaaatttt gcatactttg ctgaagagta cttgtattaa
     1981 aatttaattt tacactttgt tgtttattat ttaaatttga atttaaagaa ccaaaattat
     2041 cttttacact ttcaaaccaa tttgaaacaa attggtttgc ttcgccatta agccttatac
     2101 taccatcatt tctagcaaca taattcgtat aagaaccgaa atttttttgt aaactactat
     2161 aattttcatc gcttaaattt aaagctataa gttcaccttg cttattttca aaaacaatct
     2221 taacaccatc gctatttaaa ctcgaaagat cttgcacggg aattttatct tgatcttctt
     2281 tttttaatac gctaagctct tttttatcaa cattattagt taaagaatga gttaaactag
     2341 cagaagtatc gattttcatt atttatcctt ttttacattt tgcaaataaa cctaaacgac
     2401 acatttttct ctcatgtgaa ttttttaaag aattacactt tttaagttct tgctcgtagt
     2461 tagcacaaga atttgcaaaa gcaaaagaac tcaaaatgct taaaaccaaa attattttta
     2521 acactttcca atccttattt taaagatttt ttagttaaaa ttataccttt tataatcgac
     2581 aaaatcttaa aaaactttat aatctcagaa aggaatcaat gaaagcatta gctcttttta
     2641 gcggtgggct tgatagtatg cttgcaatga aactcatcac tgcacaaggc atagaagtta
     2701 aagctctaaa tatcaacata ggttttggaa gcacaagtga taaaagcgaa atcatgaaaa
     2761 agcgtgcggc aatgataggt gcagattttg aaatgataga tgtaagaaat tcctatcttc
     2821 aagaagtgct ttttaatcca caatatggct atggcaaaca ttttaatcct tgtatagatt
     2881 gtcatgcttt tatgtttaaa actgctttgg ctatgttaaa agaagaaaac gcaagtttta
     2941 tcatcacagg agaagtttta ggacaacgcc ctatgagtca aagaagtgat gcgatggcaa
     3001 aggttaaaaa acttgctctt gatgaagaag atttaatctt gcgtcctatg tgtgcaaaaa
     3061 acctacctct aaccaaacct gaaagagaag gttgggtaga tagagaaaaa ctcgaaggta
     3121 ttagtggaag aagtcgtaaa agacaacttg aacttgcagc taaatttggc ttagaagact
     3181 ttgaaagccc aggtggaggt tgtttgctaa ctcttgataa ttttgctaaa aaaattcgag
     3241 atttcataga atttgacaaa gatatgcagg ttaatgacgc acaactttta aaatatggtc
     3301 gtcatttaag attacctaat ggagctaaaa tgatcatagg tagaaatgaa cttgaaaata
     3361 ctcttttaaa aggtttaaaa actcctaaat atgaagtcat agaacttggg gatttaatcg
     3421 gagcttactc tttggtagat gaaaaaattt cagaaaaaga cttagaactt gccttaaaaa
     3481 tagcccttac ctatactaaa cacgaagcag gaaaaagcta tgaacttaaa tttaaaaatc
     3541 aagcttatac aagcatagct tttgaaaata aggctgatat taatcaattt tttattagtt
     3601 aaagtataaa gtatttagca aaacaagcga tatagtattt gaatcttttc aaaatattgc
     3661 aatcaagccc atgaaaatgg gcttttttta ttttaatcca taagcatttt ttaaattgtt
     3721 taaattcgca ctcgcattca aaagcaaaca atcagccaaa actaaacgca ccatagcact
     3781 agctacaaca cttcctctaa cacctacaca aggatcatgc ctacctttga gttcaaattc
     3841 caaattattg ccaaatttat ctatactttc ttgcttggaa aaaatagaag gagtaggttt
     3901 aaaataagtt tttaaaataa gattttctcc atttgaaatt cctcctaaaa ttcctccgct
     3961 atgattgctt aaaaacttgc catcttttaa agcatcatta ttacacgatc cgcgcatttt
     4021 gcttgcatta ataccttcgc ctatttcaac tgctttaaca gcattaattc ccattaaagc
     4081 atgagctaat ttagagtcta acttatcata aagaacttct ccaagtccta taagcatacc
     4141 actaactttt gtaaaaacag cagcgcctac gctatctttt gagtttctag catttaaaat
     4201 ttcattttta aagtcacttt ctagttttgg atcaaggcaa aaaatttcac ttttcttagc
     4261 aaattcaaaa tcaaattctt tttctttcaa atttgataca aaagttccta ccccaaaaac
     4321 accactttga acacaaatgc caaattcacg caaaagcatc gctgcaactg caccaccagc
     4381 cactctagca acactttccc tagcacttga tctaccccca cccctatgat ctcttatgcc
     4441 atatttataa aaataagtaa aatccgcatg agcaggacga aatagatctt ttaaattatc
     4501 ataatcctta gaatgggcat tttcattaaa aaccactata gctatgggat gacccgttgt
     4561 atatccttca aaaaccccgc ttaaaacctg agctttatcg ctttcttttc ttggtgttgc
     4621 aaatttactt ccgcctttgc gtttatcaag ctcattttgc aaaaattctt catcaaattt
     4681 aaccccagca ggtattccat caataataca tccaacagcc acaccatgag actcaccaaa
     4741 acttgtaaat ttcaatctcg taccaaaggt attcactata aagctcctaa tttctcaagt
     4801 gcaatttttg ctgccatttg ctgtgcttct tttttgcttc ctgcaatagc tcttgcaagt
     4861 tctttaccat caagcattaa agcaatttca aattgcttta aatgatcagg gccaaaagca
     4921 cgcactgttt catactgcgg agtttgtccg atttttccct gtgtaatctc ttgtaatttt
     4981 gttttataat cttttataag aatttttgca tcaatttgag ggaaattttt ttctataagc
     5041 cttaaagcaa tagtttttgc aaactcgaac ccagcttcta aatgtatagc acctataatg
     5101 gcttctaacg catctgaaag tatagaaggc ttttcttttc ctccattgtt ttcctcagca
     5161 acactcataa gaataaaatc gcccaaattt aaactatttg caatttttgc aaaagacttt
     5221 tcattcacta aagctgctct aagcttagat aaatctcctt cggcatcttt ggcgaattta
     5281 tgaaaaaggt attcacctac aactaaatca agcacggcat cacctaaaaa ttccaagcgt
     5341 tcgttgttgt aagatttttt aaaactttta tgggttaaag catgtataag aagattttta
     5401 tctttaaatt cataagttaa actctgctct agcttttcaa tgtttttcat cattttccct
     5461 tgcaattttc aaagcagctt cacgcgccaa tgtatcacac ctttcatttt ccaaatgtcc
     5521 attatgtgct tttacccaaa aagccttaat cttatgagat tttgccactt taatatattc
     5581 cttccataaa tctatatttt ttttaccttt aaaatccttt tttatccatc cttctagcca
     5641 ttcattaata ctttgaacca ttaggttaga atctgtaaaa agcgaaattt cacaaggctc
     5701 ttttaaagcc ttcaaagatt caataattgc cattagctcc attctattgt tagtggtatt
     5761 agcctcagct ccaaaacctt ccttttgata ctccttataa cgcaaaatat aagcccatcc
     5821 gccaaaacct ggattgttaa gacatgagcc atctgtataa atttcaatgt gtttcattgt
     5881 ttttcacttc ataaataatt ttacaagtat taaactcata acaaacagga cagtgataaa
     5941 aaaacaaagg cattacattt ttacactcag aacaacggta tgaaaattct aaccccgcat
     6001 taaaagaatt atcttttaaa atttttaaca ttttaaaatt agaattttta aaaacaaact
     6061 gatgcgtatc atcatgcttt gaaattttac ccaaagcata aaagaattct aaaaaatctt
     6121 gattttctaa attaaacgct tcattttccc tataaagcaa atcacaaata tcaaaaaaat
     6181 tttgccctaa aaacatatga tatttttcaa aaactaaacg ccccaacata ggattatctt
     6241 ctattttaaa ttctaaaagt tttttctttt tttcttcatc agtgatatta aaagtacaaa
     6301 gttctaaagc tttgataaaa tcatgctctt tttgcacatc ttcattaagc tcaaaaagac
     6361 attctaaaag ttctaaattt tctttataag aacgaagttt taaataaaca atttttaaaa
     6421 gttttaaagc ttgtatattt cttggacgca gttttaaagc ttgtaataaa acttcttttg
     6481 cacgctctaa aaatcctgct ttaaaataaa cttttgccaa agaaaggaaa ataaattctc
     6541 tttcttgttt atctttacat ttttcaagag caattaaata aatttgagtt gctttttcaa
     6601 attccccact tttagtaaaa atttcggcca aaaaacttaa atttccaaaa ctcaagctac
     6661 tatttcttaa caactcttta tgagcgttat ccatttcaaa tttttttata aatttttcaa
     6721 gcttttgttc ttcatctttg ttagcaaata ttttccaaat ataatttgca acagctacaa
     6781 caaatactaa aattgttaaa attataagcc ctactaaagg gtctctgtat tctacaaaga
     6841 aaaaatccat agtctcgctc taaaaatttt atgccaaatt atagccaaat ctttgtataa
     6901 ttttaacaag gtttgtaaaa tgataactaa agaaagtata gaaaatttat cccaaagact
     6961 taatattgtt gatattatag aaaattatat tgaagtaaaa aaacaaggct ctagttttgt
     7021 gtgtatctgt ccttttcatg cagataaaaa cccgtctatg catatcaatc ctaccaaagg
     7081 tttttatcat tgttttgcct gcaaggctgg tggagatgct tttaaatttg taatggatta
     7141 tgaaaaatta agttttgccg atgcagttga aaaagttgca agccttagta attttacttt
     7201 gagttataca aaagaaaaac aagaaaataa aaaagagcta aagtctatac taccaagctt
     7261 aaatgcgtat tttaaagata atctcaaaca ccacaaagaa gtcttaacct atctttacca
     7321 aagagcttta aatgacaaag atatagccaa attcgaatta ggttttgcgg gagcaagtga
     7381 agatagtata agattattgc aaaatcaaaa aattccttta gaagatgcta tgagtgttgg
     7441 agctttaaaa aaagatgaaa ataatgaatt ttacgcaagt tttatatggc gtatcacctt
     7501 tccaatctac gatcataaag acttattagt agggtttgga gggcgtactt taaatcccaa
     7561 tgtaccggca aagtatgtaa attcacccca aaatatactt tttgataaaa gtagaatttt
     7621 ttatgctttt aacatcgcta aagaaaatat agcccaaaaa aaagaaataa tagtatgtga
     7681 aggctacatg gatgcaatag cttttcacaa agcagggttt aataatgctg tagcagttct
     7741 tggaacagca ttaaccgaac atcatctacc cttaatccgc cgttatgatg caaaagtgat
     7801 tttatgtttt gacaatgatg aagcaggatt aaaagctgcg acacgatctg catttttatt
     7861 aagcacaaac aaaatagacg gtaaagtggc aattttgcaa ggtggaaaag atcctgctga
     7921 gctcgtagca aaaaatgaaa gcacaaaact tcatgatata ctcgatgaag gaatagagct
     7981 tggtgaattt tatatcagac gcttaatatc cactcattcc ataatttctg ctcttgataa
     8041 acaaaaagct ttagaaacta tacaaaaatt cacctttaat cttgaacctt tagtggcaaa
     8101 ttcttacact agtctagttt caaatttatt aaaagtagat gaaaaattta ttgtcttatc
     8161 acaaaattca aaaaaaacca tacaaacccc tttaatttct caaaataaat acaattttcc
     8221 taaagaaaaa attcacattg cagaattaga acttatagct tttttaaaac agcatccaga
     8281 tatatgtaac gattttaagc aaattagtga tagtgtttgt tttaagcata aaattttatt
     8341 ggataaaatt ttagaaaaaa aaggttatga agatagtgat attagagaat ttgaaagtaa
     8401 aaatattcga aaaaatttaa actatagcga attcttgtta ggtatttgca aggttaattt
     8461 agctttttta aacaatgtaa aaattaaaaa ttctacactc gcattaaaaa aacaactttt
     8521 tacgcttatt gataaaaatt taaatcttct aattaaaaat ttaaataccg aagaattaaa
     8581 taatttttta aaagaatatt taagcttctt aaaatatgaa aaaaacgaag aaattctgca
     8641 acaatcattt agaaacttaa atggaatttt tagcaacaaa aactttacag cttatgattt
     8701 aggatttagc gcacaagata atgacgaacc tttttaattt atttaaattt caagccttaa
     8761 tttacctttt tttaaacaca atcacgctaa agtatataaa aatttttaag gataaattat
     8821 gatgcctttt agcgatgaag agcttataaa tcctgttaaa gcaagtttag aaaagagctt
     8881 gcctatgctt gaacgtgatg gcggagggct tgaattttta ggaattaaaa atggggttgt
     8941 ttatgtccat ttaataggag cttgtaaagg ctgtgcatcg agtggaacaa cgctaaaata
     9001 tggccttgaa aggcaactta agatcgatat tcatccagaa atcactataa tcaatttaaa
     9061 cggcggagca gacgaatttg caaaattata aaaaacttgg aattgaacat ttttacaaga
     9121 aagattttaa aactgcaaaa atgtattttt ctatggctta tgaaaaacgc aaaaataaac
     9181 gcttgctaaa ttttatctgc ctttgtgatc ttgctttaaa atctcctaaa gaagcttctt
     9241 tactttttga tttttatata gaacattaca aaatctctag cattgataaa gacttagaag
     9301 aaattttaag tacaattgaa tttaaaaaac aagaaaacaa acaggaaaat gaatttgaag
     9361 atgggcatgc gttaaattat caagattttt taaaaagcga agaagaactt ggctttcaaa
     9421 aaagttttga aaatatcatt aatagcacta aattagttat tgataatcgt gatgattttt
     9481 tagatttttt ggaaaaatta cttgataatg gctataaaga tatgacttta aattatatag
     9541 aaaatgttat gcctcatttt tgggcaaatg atagatttat caaactccaa gaaaaactca
     9601 taggatttaa aagtgaaatt aaaacttgaa aattcattca ttacagataa taccttagag
     9661 tgtgaaaaag aatgcttttt tttacaaacc acacaaaatg ctaaatttca cgctcaagcc
     9721 ttagaaaaag gtgcaaaaat cattgatgta aatgagtgta aaaaactttt aaaaatcgat
     9781 gaaaagattc aaatcatagg aatcacagga accaatggca aaaccacaac cgcagcagcg
     9841 atttattcta tcttattgga tttaggttat aaatgcgggc tttgcggaac aagaggagct
     9901 tttatcaacg atgaacaaat tgatgaaaaa tccttaacca cctcccctat tcttaaaacc
     9961 ttagagtacc tacaaatagc cactcaaaaa aaatgtgatt ttttcatcat ggaagtaagc
    10021 tcacacgcac tcgttcaaaa ccgtatcgaa ggcttaaaat ttgttgctaa aatttttacc
    10081 aatatcactc aagatcattt agattttcac ggtacttttg aaaattacaa agaagcaaaa
    10141 gagctttttt ttacagatga gagtttaaaa tttatcaaca aagatgcttt ggctattaaa
    10201 tttaatgtgc gtaatgcttt tacttatggt atagaaaatc ctgctttata tcaaatcaaa
    10261 gcttattctt tagaagaagg cattagtgct attgcaacaa ataaaaatca aacttttcac
    10321 atagactcgc ccttgctagg actttttaat ctttacaatc ttctagttgc tagtgcttgt
    10381 gtgaatgaac tcgtaaagcc tgatttaaaa gatttagaaa aagctatcag tggatttggc
    10441 ggggtttgtg gtagagtaga acaagtagca aaaggtgtga tcgtagattt tgctcatacg
    10501 cctgatggca ttgaaaaagt acttgacact cttaaaaata aaaaactcat cgttgttttt
    10561 ggagcaggtg gagatagaga taaaaccaaa cgccctttaa tgggaacaat cgtcgaacat
    10621 tttgcaaaaa ttgctatcat tacaagtgat aatccacgta gcgaagaacc aaaaaccatc
    10681 atggaagaaa ttttatcagg ctttgctaaa aaagaaaaag ttttaatgat agaagataga
    10741 aaagaagcta taaaaaaagc tttagaacta aaagaaaatg acgatttagt cgttatttta
    10801 ggcaaaggtg atgaaactac tcaagaaatt aaagggataa aatatccttt tagtgataaa
    10861 gtagttgtta atgaaatttt aaaaaatcaa ggataatcaa tgtttgaaaa tatggatttt
    10921 tctaaaatgg gcgaactttt aaatcaagtt caagaaaaag caaaaaatat agaactagaa
    10981 cttgcaaatc gtgaatttag cgccaaaagt ggagcaggac ttgttaaagt aagtgctaat
    11041 ggaaagggtg aaattatcga tgttagcatt gatgattctt tacttgaaga taaagagtcc
    11101 ttgcaaattt tacttatttc tgcaattaat gatgttttgg ctatggttgc gcaaaatcgt
    11161 tccagtatgg caaatgatgt tttaggtggt tttggaggta tgaaattatg aaaaaaattt
    11221 taattatttg catgcttttt actttgtctt ttggtataga aagacctaaa tttgaagatt
    11281 ttttagcagg ttatgaaaga aataaggcaa gcatgctcaa ctatgaagga atgccagctt
    11341 ttgcactcag tgaaaattta cttgctgtgt taaaacagcc taatactaag cttaacaaat
    11401 atgtaaaata tgatccattt ttaaatttat atcttgtaag aactgacttt agcctaatcc
    11461 ctactcctat gggtgatgaa gaaaaactta ctcgtaatga ttgggttgga atttgggatc
    11521 ctaataaacc ttatataggg catattaagt atttagctca aaatattgac gaaaaagatc
    11581 aacttgattt taattctaaa ataggacttt tagggactcc gtgctgtgaa atgatgggga
    11641 ttgctttaaa taatagctct tttataggca atcgctattt aaaacatttt atgaaatata
    11701 acgatgctta ttggggggat attggcgttg attttgttgt tcgagaaaat aaaatttatg
    11761 ttaacaatgt aagaaaaaat ccacaatttt taatcaacga tcaagttata agtgttgatg
    11821 gcttgcccgc caatgattta agaaaactca atgaaaaaat tctttttgca gatcgcggaa
    11881 gcactcttta ttttcaagtg ttgcgtgata atatggattt aaatatttct actgaagttt
    11941 ttgcaaaaga tttgagcaaa tttaatcttc ctgattctaa accaaaacca aaaattacaa
    12001 atttcacaag caatcttggt ttaacggtta atactagtct tgttgtaact aaaatagatc
    12061 caaaatcaaa agcatcaaat gcaggattta tggtaggaga taaaatttta cgcgttaata
    12121 atattatttt aaataatttt aaagaattac aaaatatttt aagcgctggt aatgacttta
    12181 gcatcttgat tgaacgcaaa agtactaaat tacctttatc aaatttcaac aatgaactag
    12241 gcggaaatgc caactcaggt ggcgacggta aatttcaatt tttcataagg cttactaagt
    12301 gaatttaaaa gaacttttta tccatcactt agaaaaaaat ctacctaaag ttgaaagttt
    12361 tcatcctttt tttaatgaag ctttagccct tatgctaaaa gcaggaggaa agcattttcg
    12421 tgcacaattg cttttaagcg tagtacaaag caataaacct gaacttttaa atcaagcttt
    12481 agatgtggct ttagctttgg aatttatcca tacttattca ctcatacatg atgatttacc
    12541 cgctatggat aatgcggatt ttagacgagg aattccaacc ttacacaaaa gctacgatga
    12601 aactacagcc atcttagtgg gtgatgcttt aaatactgaa gcttttttag ttctaagtca
    12661 tgctcattta aaagatgaaa tcaaaatcaa actcatcaaa acccttgcct ttaatgcagg
    12721 acttaatgga atggtcatag gacaagctat tgattgtttc tttgaagaca aaagactgag
    12781 tttaaatgaa cttgagtttt tacatacaca caaaaccgca agattaatcg ctgcagcttt
    12841 aaaaatgggt tgtgaaattt gcgaacttaa caacgaagaa agcaatcaaa tttacaaact
    12901 tggtttaaaa ctaggactga tttttcaaat caatgatgat attatcgatg taactacaag
    12961 tcaagaacaa agcggaaagc ctactaacaa cgatactcat aaaaattctt ttgtcaattt
    13021 acttggactt gaacaagcca taaaaacaaa agaaaatctt cttagtgaat gtgaacaaga
    13081 cttagaaaaa cttaatgaaa aactcgcgca aatgatacaa aatttaataa ttcaatactt
    13141 ataaaggcaa aaaatggaca ttcaaatttt acaagaacag gcaaatactc taagattttt
    13201 aagtgccgat atggtgcaaa aagcaaactc aggacaccca ggtgcacctt tgggtttagc
    13261 agatatttta agtgttttaa gttatcattt aaaacacaat cctaaaaatc ccacttggct
    13321 aaaccgtgat agacttgtat tttcaggcgg acatgcaagt gctttgcttt atagtttttt
    13381 acatttaagt ggctatgatt taagcttaga agatcttaaa aatttccgcc aacttcattc
    13441 taaaacccca ggacaccctg aaatttcaac tcttggagta gaaatcgcta caggcccttt
    13501 aggacaaggc gttgcaaacg ctgtaggctt tgctatggca gcaaaaaaag cgcaaaattt
    13561 gctaggtagt gatttaatcg atcataaaat ttattgtctt tgcggagatg gggatttaca
    13621 agaaggcatt tcttatgaag cttgttcttt agcaggactt cacaaacttg ataatttcat
    13681 acttatttat gatagcaaca atatctccat agaaggcgat gtaggtttag cctttaacga
    13741 aaatgtaaaa atgcgttttg aagcacaagg atttgaagtt ttaagtataa atggacacga
    13801 ttatgaagaa attaataaag ccttagaaca agctaaaaaa tccacaaaac cttgtcttat
    13861 catcgcaaaa acaactatag caaagggtgc aggagagctt gaaggcagtc ataaaagcca
    13921 tggcgcacct ttgggcgaag aagtgattaa aaaagccaaa gaacaagcag gttttgatcc
    13981 aaatatcagt tttcatatcc cacaagcaag caaaatccgc tttgaaagtg ctgtagaact
    14041 tggggattta gaagaagcaa aatggaaaga taaacttgaa aaaagtggta aaaaagaact
    14101 tttagaaagg ctattaaacc ctgattttag caagatagct tatcctgatt ttaaaggaaa
    14161 agatcttgct acaagagata gcaatggtga aattttaaat gttttagcta aaaatttaga
    14221 aggattttta ggtggaagtg cggatttagg cccttcaaat aaaacagaac ttcacggtat
    14281 gggagacttt atagaaggta aaaatatcca ttttggcatc agagaacacg ctatggcagc
    14341 gattaacaat gcttttgcaa gatatggaat tttcttacca ttttcggcaa cttttttcat
    14401 ctttagtgag tacttaaaac ctgccgcaag aatagcagcc ctaatgaaaa tcaaacattt
    14461 ttttattttc acgcatgata gcataggcgt gggcgaagat ggcccaacac accagcctat
    14521 agaacaactt agcactttta gagctatgcc aaatttttta acctttaggc ctgctgatgg
    14581 ggtagaaaat gtcaaagctt ggcaaatagc cctaaatgct gatattccaa gtgcttttgt
    14641 gctttcacgc caaaaactca aagctctaaa tgaacctatt tttggagatg taaaaaacgg
    14701 agcgtattta ctcaaagaaa gcaaagacgc taaatttaca cttctagcaa gtggaagtga
    14761 agtttggctt tgtctagaaa gtgcaaacga acttgaaaaa caaggttttg cttgtaatgt
    14821 tgtttctatg ccttgttttg aactttttga aaaacaagat aaaacttatc aagaaagatt
    14881 gttaaaaggt gaagttatag gcgttgaagc agcgcattct aatgaacttt ataaattttg
    14941 ccacaaagtg tatggcatag aaagttttgg agaaagtggt aaagacaaag atgtgtttga
    15001 acactttgga tttagtgttt caaagcttat aaattttatc cttagcaaat aaaatgaatg
    15061 caaatttcaa atttcaaaat aacactcttt ttatctttgg aatttgggat aaaacaagta
    15121 tttataagtt aaaaataaaa gattttttag ctttgattca aagcaaggaa gtgatttttg
    15181 attttaaaga tctaaaagca atcgataccg ctggagtaag atttttcctt gctttggaaa
    15241 atgaccttaa agataaaaat attaaaatca ccaaagaagg cttaaattca cgctttcaaa
    15301 ccctttttga actttgtgaa aaaaactacc aaagactaag taaaacaaaa aaatcacata
    15361 aaaatttcag tgaatatttt atcgatcttg gaaaattaag tttagaactt ttaaaaattt
    15421 taataaaatt caccaatttc acaggagctt ttttcacaag tcttttttta tgccttaaaa
    15481 atcctaaaaa ttttcgcttt attgcttttt tatatcatat agaaaattct gcttttaaag
    15541 ctttgcctat agttatttta accgctcttt tagtaggagt ggttttagcc tatcaggctg
    15601 cttatcaact cgcacaattt ggagccaata ttttcatagt ggatttgatg ggaatttcag
    15661 ccactagaga acttgcacct ttaatcgctg ccatagtgat cgcaggaaga agtgcaagtt
    15721 cttataccgc acaaattgga gtgatgaaaa tcactgatga aattgcagct atgaatacta
    15781 tgggttttcg ttcttttgaa tttattatta ttccgcgtgt tatggctttg gtagtggcta
    15841 tgcctttaat cgttgccatt agcgatgcga tcagtattat aggtggaatg atggttgcaa
    15901 aattaaatct tgatatttct tttgccgaat ttttaagacg ctttagagaa gctgtagata
    15961 taaaacatat ctttatagga cttgcaaagg cacctatttt tggattttta ataggactta
    16021 ttgcttgttt tcgtggtttt gaggtaaaaa acactacaca aagcatagga atttatacaa
    16081 caaaaagcgt tgtaaatgct attttttggg tgatagcttt tgatgcttta ttctctgttg
    16141 ttttaacttc tgcaggaatt taaatggtta ttaaagcgca aaatatcatt acaaaatttg
    16201 gagaaaaaat tgtccatgat ggcgtaagtt ttgaaatcaa aaaaaatgaa atttttggta
    16261 ttttaggaag tagtggaagt ggaaaatccg tccttttaaa acaaatgctt atgcttgaac
    16321 attttgatgg tggagaatat gaaattttag gctataaact taaaaatatc gacgaagaag
    16381 atgcacttgc tttgcgtaaa aaatggggtg tggtttttca gtttgctgca ctttttagct
    16441 tttttaatgt ttatgaaaat atcgctattc ctttaaaaga atacactcat ttagatgaaa
    16501 atagcataca agaactggtt ttaatgaagc taaaaatggt aggcttaaac gaaagtgttt
    16561 taaaacaatt tccaagcgaa cttagtggcg gtatgcaaaa aagagtggca attgctagag
    16621 ctttagcact tgatagtaaa ttgctttttt tagatgaacc tacttcagga cttgaccctc
    16681 atagtagtcg cgaatttgac gatttggttt tagagttaaa aaaaagtttt gatttaaata
    16741 tcattttggt tacacatgat aaagaaagta tgaaaaattt actcgatcgc tttatcattt
    16801 tagaaaataa aaaagttgga ttttgcggta cttacgaaga attgcgcttg caaaatgaac
    16861 gactttttaa aaaatttatg gagtaaaagt ggaaaataga gcaaattatt tttttgtagg
    16921 actttttgtt tttggagtat tttttgcaag tcttggtttc atactttggc ttgggggata
    16981 ctccaaagaa gaaagtttta agtattatga aattcacaca caagaatccg ttgcaggact
    17041 tggtataaaa gcacccgtaa ggcttttggg cgtggaagta ggtagcgtgg aagaaatcag
    17101 catttacaat caagatgaac tcggcgttaa tatacgcatc aaggtcaaaa acaatacccc
    17161 tataaaagaa gacacctttg ctactttaca acttcaaggt atcacaggac ttaaatttat
    17221 ccaacttcaa ggcggaagta aaaatagtaa agatctagta tctatccacg gaaaacttcc
    17281 agtcattcct tttaaagaaa gttttttagc aaccatagac agacaaagtg aacatatttt
    17341 ttctttggtt aaaacggccg atgataaatc aaaagaactt ttaagcgaaa aaaatcttaa
    17401 aaatctagaa atccttttgc aaaatctagc agaattaagt gcaaatttaa acgctaattc
    17461 taaaaattta agtcttaatc tttcaaacgc aagtttaaaa ataggaaaaa tggctgataa
    17521 tataagcctt agtgcgcaaa atttcaactc cagtcttaaa aacataaaag aaagcacaat
    17581 gattttaaaa aatttcataa aaaaagctga tgaaaaatta aacacttatg atgatattaa
    17641 agcatctttg atgcaaaatt tagaactttt taaacgggtt ttaattgaaa gcaatattct
    17701 aatagaaaat ttacaaaaca gccctgctga tttgattttt aaagaaacta aacctaaact
    17761 tggaccagga gaaaaataat gctaaagcaa atattctata tttttacttt tatttttata
    17821 ttatgcggat gctctttaaa acacgaaacc atcaataaaa atgaaaatat catattaaaa
    17881 gatgaaggaa tagactcaaa tatttttttt aaaaaaaccg gtaaaattct taaaattcgc
    17941 aatgcaaata cacctttgta tttaaactca agagctattg tttatataga taatggtttt
    18001 agcaacaaat atgcacatta tttctgggga gatttgccaa gcaatcttta ttctttttta
    18061 attttgtcaa aatttgaaca aagcaatatt tttacaacct tactttcttc aacaagctct
    18121 ttaaatgcgg attatgccct tgagagcagg attaattctt ttgagcaaat tcttagcaac
    18181 aatgaaaact acgctcaaat ttctataagt gtaaatttca taaatcttga aaacaatcag
    18241 ataatagctc ataaaatttt caatactaaa gaaaaaatag aaaaaaaaga tatccgctct
    18301 acttataatg cttttcaaaa agccttgaat aaaattggca atgagattat tttttgggta
    18361 aattctaact tatcctaatt taggaacact ttttgctttt taaatattta gcaatatttt
    18421 tgaaaggtaa acaatgaaaa gtgatttaga aatatttaaa aaacacttag gcgaaattca
    18481 aggcgtgaat gaatttaaag caaatcaaat ttgctctcaa atcaatgatg caaatgattt
    18541 tataggagca cttcaagtgc ttgatatgtc tttaaaaaaa atagaaaaaa gcattctaga
    18601 aagaatagat gaaaattcag atgatatgca aaaaagaact cttgatgcca cagcatcaca
    18661 acttatacaa aactgctctt tcatgggaac agcccttttt ggaaatattt tcaatgttta
    18721 tgttggtaaa aaactttttg aatttgaaat tgctaatcca cttttaattc ttcaaacaag
    18781 taattacgaa ggtgtattgg cctatataca agataaaaga gatgaaataa aaatcattct
    18841 atcagagtta gcaaccacaa ttaccatggg cgaaactatg gataatactg gaatttataa
    18901 ctctacaatg gattttaaaa atttatttaa ataagaatag taatcgtttg ttctctttaa
    18961 gcaaatataa tatattttag cttaaagaga ttttccaaac tcttaaaaga gagttaggct
    19021 acgaataaaa agggggaggg aaatagccta acccaaacga gatcttaaaa ga
//
LOCUS       DAZAND010000019        18529 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.019, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000019 DAZAND010000000
VERSION     DAZAND010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18529
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.019"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..163)
                     /locus_tag="ACHDOB_000545"
     CDS             complement(<1..163)
                     /locus_tag="ACHDOB_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325486.1"
                     /translation="MSKAFTLFELIISLILFTFITSLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLK"
     gene            complement(160..462)
                     /gene="ctsT"
                     /locus_tag="ACHDOB_000546"
     CDS             complement(160..462)
                     /gene="ctsT"
                     /locus_tag="ACHDOB_000546"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HFN3325487.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(459..1190)
                     /gene="proC"
                     /locus_tag="ACHDOB_000547"
     CDS             complement(459..1190)
                     /gene="proC"
                     /locus_tag="ACHDOB_000547"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HFN3325488.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(1190..1579)
                     /gene="fliW"
                     /locus_tag="ACHDOB_000548"
     CDS             complement(1190..1579)
                     /gene="fliW"
                     /locus_tag="ACHDOB_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HFN3325489.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
     gene            1740..2387
                     /gene="bamD"
                     /locus_tag="ACHDOB_000549"
     CDS             1740..2387
                     /gene="bamD"
                     /locus_tag="ACHDOB_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HFN3325490.1"
                     /translation="MKKGIFLLVFLSVFFNACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            2404..4779
                     /gene="lon"
                     /locus_tag="ACHDOB_000550"
     CDS             2404..4779
                     /gene="lon"
                     /locus_tag="ACHDOB_000550"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HFN3325491.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELFIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(4839..5099)
                     /gene="rpsR"
                     /locus_tag="ACHDOB_000551"
     CDS             complement(4839..5099)
                     /gene="rpsR"
                     /locus_tag="ACHDOB_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HFN3325492.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(5110..5661)
                     /gene="ssb"
                     /locus_tag="ACHDOB_000552"
     CDS             complement(5110..5661)
                     /gene="ssb"
                     /locus_tag="ACHDOB_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HFN3325493.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            complement(5670..6047)
                     /gene="rpsF"
                     /locus_tag="ACHDOB_000553"
     CDS             complement(5670..6047)
                     /gene="rpsF"
                     /locus_tag="ACHDOB_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HFN3325494.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            complement(6134..7000)
                     /locus_tag="ACHDOB_000554"
     CDS             complement(6134..7000)
                     /locus_tag="ACHDOB_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HFN3325495.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLACFKFLPEE
                     QIIFSFDEDFELFLGYNYNVCEEGFWAFSLKFKKYTILQCNFCFTLENNLLLSCIQGH
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQTTLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFAMLEEI
                     KTNLDKTLSIQD"
     gene            complement(6993..8099)
                     /gene="rseP"
                     /locus_tag="ACHDOB_000555"
     CDS             complement(6993..8099)
                     /gene="rseP"
                     /locus_tag="ACHDOB_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HFN3325496.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIAPNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            complement(8096..8632)
                     /gene="pgsA"
                     /locus_tag="ACHDOB_000556"
     CDS             complement(8096..8632)
                     /gene="pgsA"
                     /locus_tag="ACHDOB_000556"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HFN3325497.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            complement(8757..9362)
                     /gene="rdxA"
                     /locus_tag="ACHDOB_000557"
     CDS             complement(8757..9362)
                     /gene="rdxA"
                     /locus_tag="ACHDOB_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFN3325498.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLNKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDTYMPFLKSLNQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLN
                     SYLSLDIQKERSSLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            complement(9362..9981)
                     /locus_tag="ACHDOB_000558"
                     /pseudo
     CDS             complement(9362..9981)
                     /locus_tag="ACHDOB_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
     gene            complement(10046..10471)
                     /locus_tag="ACHDOB_000559"
     CDS             complement(10046..10471)
                     /locus_tag="ACHDOB_000559"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFN3325499.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKIQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGIGQAFLKKIQIWAKDQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(10483..11571)
                     /locus_tag="ACHDOB_000560"
     CDS             complement(10483..11571)
                     /locus_tag="ACHDOB_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HFN3325500.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSPLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIISYSNRIKHEWLGISESVLENNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            11670..14423
                     /gene="ileS"
                     /locus_tag="ACHDOB_000561"
     CDS             11670..14423
                     /gene="ileS"
                     /locus_tag="ACHDOB_000561"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HFN3325501.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDGGCYDETLRAKELLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYKAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHTNVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            14417..14527
                     /locus_tag="ACHDOB_000562"
     CDS             14417..14527
                     /locus_tag="ACHDOB_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325502.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            14524..15885
                     /gene="gatA"
                     /locus_tag="ACHDOB_000563"
     CDS             14524..15885
                     /gene="gatA"
                     /locus_tag="ACHDOB_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HFN3325503.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASTNLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            15895..17352
                     /gene="guaB"
                     /locus_tag="ACHDOB_000564"
     CDS             15895..17352
                     /gene="guaB"
                     /locus_tag="ACHDOB_000564"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HFN3325504.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            17349..17522
                     /gene="xseB"
                     /locus_tag="ACHDOB_000565"
     CDS             17349..17522
                     /gene="xseB"
                     /locus_tag="ACHDOB_000565"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HFN3325505.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            17515..18291
                     /locus_tag="ACHDOB_000566"
     CDS             17515..18291
                     /locus_tag="ACHDOB_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HFN3325506.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            18303..>18529
                     /locus_tag="ACHDOB_000567"
     CDS             18303..>18529
                     /locus_tag="ACHDOB_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HFN3325507.1"
                     /translation="MRKILLQIFIFSVLFIVTFTINRVLMQNSFIPTGLISDKNEIFL
                     MYLLGVFHDIRFLSAAFLPFLLCGFLSLIFS"
BASE COUNT         6503 a         2513 c         3183 g         6330 t
ORIGIN      
        1 ttttaagcaa gtttaaatgt gcttgagtga taagattgtt tgtatgtaaa gcagtaaaat
       61 ttaaatgata aaaatccatt aaaggttttg aaagtaagct agttataaaa gtaaaaagta
      121 ttagtgatat tataagttca aaaagtgtaa aagctttgct cattctttaa aataaacgct
      181 ataattttga tcttgaaagt ataatttttg aaattgaaat ataccatcat taacaaactg
      241 ttcttgtaaa actataggtt ttaaggctga agtttgaagt atgatggttt taaaaatagg
      301 cttttcatat aattcttctt gaagtttata gagtctttca aaaatattta aattttcata
      361 gtttttgtaa agttgaatat agtaataaaa aatgccaatg aaaattaaag atatgatcgt
      421 tatagcacta atgctttcta taagtatgaa agcctttttc atttagcgct gctagcattt
      481 atggcttcaa aaaaacttcc gcgaattcct ttttgttcga gtatttttat gccttttatt
      541 gtaactcctc caggggagca aatattttct ttgataatag ctggatgctc atgttctagt
      601 aaagcactag agcttttaaa taaagagcgc gtaagattga gactaagttc ttttgacaaa
      661 ccttcataaa ctccagcatt agcaatgctt tctgctataa gtgctaaaaa agcaggagcg
      721 cagccgctaa tcgccatagc tgcattcatt tgtatttcat tatctaattt ataagccgag
      781 ccaaaagttt ttaaaatgtc taaaatttca ttttcaaaat gagagttttt aagtatatat
      841 ggtgtggttg aagccttgta tttagctgct gtattgggta ttattctaac ataattttga
      901 gctttgatgg tttgtagttt ttcaaaatca acattggcta aaacagagat taagatacgt
      961 gcttgtcctt ttagcatttg agcaatattt tctaaagcat aaggtttaaa tgctaaaata
     1021 acatctttac cttctatgtt aaaatctttg taaagtaagg ttttaaagcc ttctttggcg
     1081 agggcttgaa gtttttctat acttcttcct actatacaaa tttcataatc atcttttaac
     1141 ccataggcta aggctgttgc catagatcca tttgcaagta tatagagcat tattttttaa
     1201 tataattagc aatttgatca gcttgaaaaa agtcgggata attaactgta tctagtatca
     1261 cttgtaccat agtattatta tcaagattaa tgactactgg agctagaaaa ttcactgtcg
     1321 attcttcaat gctttttgct atggctacta tattaaaaat tttcatatta gattcaggtg
     1381 ttaaagaaag aagctcttga taataagttg gtatatcaaa ttcataatca ggtctaatca
     1441 aataaggatt aattaaaaca aaagaaaagt ctttaccatc aagactttta agtcttacaa
     1501 atacttcatc gatagttgaa aattccatat ttttggtttc ttcaaaacct aagatagggc
     1561 atttaacagc tagggtcatg ttttctcctc aagttataat gtttaatatt ttaacataaa
     1621 ataagcaata atcattccaa aattttaaat tatttaatta attttattat aattttagaa
     1681 gaacataatt ataaaatcgt taaaatatat atttttgaga atataaatca aggtgaagta
     1741 tgaaaaaagg tattttttta ttggtttttt taagtgtttt ttttaatgcg tgtagtacga
     1801 aaaatgatga aggtttatac aatcttagtg ctagtgagtg gtataaacaa attattaaag
     1861 atttacagga caaggatttg gaaaaagctg atgatcatta taatggtatg gcaagtgagc
     1921 acgttgccga tcctttattg gaaactactt taattatttt agcacaagct catatggatg
     1981 aagaggaata taagttagct gaattttatt tagatgaata taataaaaaa tttggaaatt
     2041 cgcgcaatgc tgattatatt cgttatctta aaattaaagc aaaatttgat gcatttgcag
     2101 tgccaaatcg taatcaggct ttaatgcttg aaagccaaaa ggaaatagat acttttttga
     2161 aagattatcc ttatacagaa tatgaacctt tggttcaaac aatgcttaca aaatttaatt
     2221 tagcggtttt ttatcttaat agtactatag aaaatctata ccagcgcata gggcatgatg
     2281 aaagtgcaca aatttataaa caaagacttc aagaaagtga attttatcag caaagtatta
     2341 tcaaacctga gcttccttgg tatagaagta tatttgaaag attttaataa acaaggaaaa
     2401 taaatgcaga ttgaagagat acaaaattat ccagcaaatt taccagtatt ggttgaagat
     2461 gaattatttt tatatccttt tatgataact cctattttta ttaacgattc atccaatatg
     2521 aaagctttag atcttgcgat taaaaatgat agcatgcttt ttgttgcacc ttcaaagttg
     2581 gaaaatggaa gaaattttga tgaaatttat aattgcggag tgattgggac tatcatgcga
     2641 aaagttcctt tgcctgatgg aagagtgaaa atactttttc aaggatatgc caagggtaaa
     2701 attatagagc aaatttctaa taaaccttta gaagccaaga tagaacttat aaaagaagac
     2761 tttttagaag gaactaaaaa agaagcactt cttgaagttt taaaagagaa agtaaaaaat
     2821 ttggcaaata ttagtcatta tttttctcca gatcttttaa gaacaattga agaaggtttt
     2881 gatgcatcta ggatttgcga tttgatttta aatactgtgc gtattaaaaa acaagttgct
     2941 tatgagtttt ttgttttaac agatcttgag caaaaattag taaaattaat agatttaatt
     3001 gctcaagaaa tagaagctaa taaaattcaa aaagaaatta aaaataaagt acattctcgt
     3061 attgataagg taaataaaga atatttttta aaagaacaat taagacaaat tcaaaaagag
     3121 cttggttctg atacgcaaaa agaagatgag gttagagagt atcaaaagcg tctggagtta
     3181 aagaagaaat ttatgcacga agacgcttat aaagaaatca aaaaacaaat tgaaaaattc
     3241 gaacgcattc atcaagataa ttccgaagca tcgatgattc aaacttacat agaaacagca
     3301 ttagatgttc cttttgaaaa aatttctaag aaaaaacttg atattaagga agtttcaaaa
     3361 cagctcaacc atgatcatta tgcattaaat aaaccaaaag aacgcataga agaatatttt
     3421 gcagttaggg agcttttaga aaaaagaaaa atagcagaaa aagatggtgc taaagttata
     3481 ctttgtcttt atgggcctcc tggcgtgggt aaaacttcac tggcaaattc tgtttcaaaa
     3541 gctttaaaaa gagagcttat tcgtatagcc ttaggtggac ttgaagatgt taatgagctg
     3601 cgtggtcatc gtagaactta cataggcgct atgcctggac gtattactca aggactcata
     3661 gaggcaaaac aaattaatcc tgtaattgta ttggatgaaa ttgataaatt aaatcgcagt
     3721 tttagaggcg atccaagtgc ggtgctttta gaaattttag atccagagca aaattctaaa
     3781 tttagggatt attatttaaa ttttaatatt gatttaagta aagtcatttt tatagcaacg
     3841 gcaaatgata ttagcaatat tcctgcacct ttaagagata gaatggaatt tatagaactt
     3901 agctcttata ctccaagtga aaaatttcat ataatgaaaa aatatttaat tccagatgag
     3961 cttaaaaaac atggcttaaa atccaatgaa ttatttattg atgatgaaac tatagagcta
     4021 atcattagcg attatactcg tgaatcagga gttagaaatt tgcgtcgcaa agtggcagag
     4081 ttgtgtcgta agagtgctaa aaaactactt ttagaaaata ttaaaaaagt cattattaat
     4141 acaaaaaatt tgaatgaatt tttagataaa aaagtttttg aaatagaaaa aaataatgga
     4201 gaaaatcaag taggtcaggt caatggtttg gcttggacaa gcgtaggtgg agatgtttta
     4261 aaagtagagg ctgtaaaaat taaaggtaaa ggagaattaa cgctcacagg aagtttgggt
     4321 gatgtaatga aagaatcagc tagaattgct tttagcatga taaaagtttt aatcgatgaa
     4381 ggaaaaataa aaatacctaa aaaaataatt attgatccta aagttaatgt ttatgatagt
     4441 tataatattc atatacatgt gccagatgga gctactccaa aagatggccc aagtgcaggt
     4501 attacgataa gcacagctat tgcttctatt tttagtgata aaaaggttaa agcagatgtt
     4561 gcaatgacgg gtgaaataga tttaaaagga aaagttttac caataggcgg attaaaagaa
     4621 aaattaattg cagcttataa agcagatata aaaacagctt taattccaag aaaaaattac
     4681 gaaagagatt taaaagatat tcctagtgag gttagagaca atatggaaat cattgctgtt
     4741 gatactttca gtgatgtttt agaatatact ttggtttaac tttattttga gaataaatgt
     4801 ataagaaagc aaacttttta caagtttgct ttaaaagatt atagtccttc aaaaggatta
     4861 ttgattactt cttttctatc cactatataa gggataaggg ctacatgtct tgcgcgtttg
     4921 attgcaactt ctaccatttc ttggtatttt ttgcttgtgc ctgttaaacg gcgtggcatg
     4981 attttaaatc tttcagataa agcatgtttt aacattgctg tatctttata atcaataaat
     5041 tcaacttttg cttcagtgta tttgcaatat ttgcgagagt attttctttt ttctgccata
     5101 gtttatcctt taaaatggta aattagtatc atcgctatca taagcatcga tatcaatttc
     5161 ttttaatttt tcttcgtgtt gtgggttttg gtttctttgt ggagcagggt ttgcttttgc
     5221 tttattaaaa ttttgatttt cactcatata aggatcatag ctttgatttt catagtttcc
     5281 actataattg ttgtttgaaa agctattatt gccaaaattt ccgccttgtt gtggagcatt
     5341 ggaattgcca agcatttcca tattttcaac ttgaatgcta tgtttagagc gattttgtcc
     5401 attttgatca ctccattgtt caaatctcaa acgtccttct atgagtactt ttgaaccttt
     5461 tgtaaggtat tggtttgcaa cttctgcggt gcgaccataa aagcttatat caataaagca
     5521 agtttcttct cttttttctc catttgcggt aaatcttctt gttactgcta tagcggaagc
     5581 tccaatagca ctaccgcttt gtgcataacg catttctata tcacgtgtaa gatttccaac
     5641 caaaacaact ttgttaaaca tctttttcct tattgaattt caggagcatc taaaggttta
     5701 atttcttttt tagattgctt aatcccgtgg ctcagttttt cccaagctgc aatttctttt
     5761 ttattttcat attttacgat taaaaatctt attacttctt cagtgattct taacaccctt
     5821 tcaagctcag cgatcaagtt tgtaggagct ttgaaataaa tcacaaaata agttcctctt
     5881 tcgtattttt tgattttata cgctaatttt ctagtaccca ttggaacaac agtttcaatt
     5941 tctgcactat ttttggttag gacttcttta acgaattcca acttcgcatt cacttcctct
     6001 tcagtaagtg ttggttttaa gataaataaa acctcataat gtttcatctt ttctccttat
     6061 ggatattaaa gcccattttt atgagcaagg attttgcata aagcaagact agattatatc
     6121 aaaatatact taattagtct tgaatactta aggttttatc taaatttgtt ttgatttctt
     6181 caagcatagc aaaacgtttt ttatacatgg agcgtttttg cgaagggatt tcttctaggt
     6241 ttttttgaga gtggtggagt ttatagtatt tgtgtttatt gatttttatt aattctccac
     6301 cattttctag ccaaattttt tgataatcta caaaatagcc tttttctttt cctttttgag
     6361 aacggatttg atttttttca tgtacaccta aagtagtttg aagttttaaa atttcacaaa
     6421 gcatcttaga gcattctata agtaaagcaa cagggcgcaa accatgacat tttttagtta
     6481 aaattttatt aatttctaaa atattaaaat ctttgtattt atgtccttgt atacaagaaa
     6541 gtagaagatt gttttctaaa gtaaagcaaa aattacattg taagattgtg tattttttaa
     6601 attttaaaga aaaagcccaa aaaccttctt cgcaaacatt atagttatat cctaaaaaaa
     6661 gctcaaaatc ttcatcaaaa gaaaaaatta tttgttcctc gggaagaaat ttaaaacaag
     6721 cgagtccctt atcaacatca taaataagtg ttttaacacg ttcatttgct ttaaaacttt
     6781 tatcgcaaaa tcttcttgta gcattgtaac aagcataggg tctttgagag aaaaagtctt
     6841 ttaaatgttt atttttttct ttattaagtg ttttttctag aagtcttact tgaggaaaat
     6901 ataaaatttt tcttgcttga aaacgcaaat agcgccaaaa gattatactt tttcttctat
     6961 cagtaaaatt tggaataggg taggaaaatt ttttattcac ctataatcct tgatatatca
     7021 ttataagttg caaagagcat taaacttaaa agtattgcca tgcctgtata gcttaaatat
     7081 tcaaaagtac gctgtggaac tttgcgtcta aaaatcattt cataaagatt aaaaagtata
     7141 tgtcctccat caagcatagg aataggtaaa agatttaaaa tgcctaaatt tatagaaatt
     7201 aaagcagtga taaataaaag caaagtaaag ctattttgtg cagcctttga ggtaatttca
     7261 gtcatggtga taataccgcc taaatttttt gcttcaactt caccacttat gagttttaca
     7321 atacccttga tgatgagtgt agaagcttga aaactttctt gtgcggcata tttaaaactt
     7381 tctaaacctt ggtgttttac aagagtgctt gtcccatttg gactgactcc aagttgaggt
     7441 ttttcaacga tttgtccaaa gtcattgtat ccttgtccta tttttggagt taaaataaat
     7501 tctaaatttt ttccttctct attgattaat attttcaaag gatctaaact taaatgcttt
     7561 gaaatttcat caaaggtttg aattcttata ccgttaattt ctaagatagt atcatttttt
     7621 tgaagtccta tttcttgtgc agcagagttt ggcgctatgt ttcctatttg cggagcaagt
     7681 ttgtttagac ctaaatttcc tatgataata taaagaaaaa aagctaaaat tagattaaaa
     7741 aatggtccag caaaaagaat ataaatcttt tttaaaggac ttaaaatgct atagctatct
     7801 ttgtctagat tttcaaaacc aggacgcata tcatcttgtc ctttaagttt aacatatcct
     7861 ccaagtggta aagtgcttaa gcgatagttt gtgcctttaa attcacgctc tataagactt
     7921 tttccaaatc ctatactaaa aacttcaact tttacaccca aagatcttgc agccaaaaaa
     7981 tgtcctaatt cgtgaaagaa aattaaaaat gagatgacta aaacagttgc taaaaattca
     8041 atagaataaa atttaattcc caaaatcaaa ataacaatta aaaataataa agatctcatt
     8101 tttctccttt tttttgagct tttatataag tatagatgta ttcaaatcca gaataaagag
     8161 ttaaaatcaa agctatgtaa agtagaattt caccgcctat ccactccatg attaaaaatc
     8221 ctatcgcagt catttgaaaa gcggttttaa gtttgcctgc aaaagaagca ttgacattta
     8281 aattttcgct aatcattaca actctaaaac ctgtgataaa aaattccctt actaatataa
     8341 tataaattac ccattcatta gcttttcctg taagtaaaag ccctaaaaaa gctgctaaaa
     8401 caagcatttt atcggctaat ggatctaaga ttccacccag ttttgtagtt tgtttccaag
     8461 ttcttgcgat gtatccatca aaaaaatcac ttaaagctgc taatgaaaaa gttaaagcag
     8521 caaaatagtt aatccaactt tgatgaatat tttcaaaatg atgaattaat aaaaaaaata
     8581 gcaaaggcgc taaaaccatt ctaaaaatcg ccaagatatt gggtaaattc ataacaagcc
     8641 ttgtgaaatt aaatgtaaaa ttataatcaa aattgtataa aatttaagca aagacttagt
     8701 aaaaatacaa aaaagaatca gtttattttt atttaaattt tgcttaaaag caaaatttaa
     8761 ataaatttta caacttcatc aaaactaaaa cgattttttt gaggattttt ttcatcgttg
     8821 caatatccta aagccaccac caaacttgat ctttcttttt gaatatcaag tgataaataa
     8881 gaattaagct tttctttatc aaaaccacct atagtgcagc ttgctatatt taaagcatta
     8941 gcactgtaaa gtatgctagc tagagctata tgagcttgtt ctcttgcata agatattttt
     9001 tgttcttgat ttagagattt taaaaaaggc atataagtat ctaagcgttt ttgaatttct
     9061 gtttcactca tatctctttt tctaagtttt tcttcaaaat aatccaaaaa atcaagtctt
     9121 gaaatgatga taattaatgc agcacaatct tttacatgtt tttgttgatt gcaaatttta
     9181 gaaagttctt cttttctttt ctcatcttgc actactataa atttccaagg ttccagtcct
     9241 aaggaactgg ggcttaatct tgctatttct aaaatagaat ttaaatcctc tttattgagt
     9301 ttttcatttt taaaatttct acaagaatat cttgtgctaa aaatttcaag ttcttttttc
     9361 attatttttc cttgtaaaat tcgacgactt cattaaaatt taagcgttga gtagaatatt
     9421 ttggttcgtg ggctttatat cctaaggata aaattacagc agtttcaaaa ggataagtta
     9481 aatgaagaaa attatcaacc ctagcttttt caaagccacc tatcatacaa gaatcaatac
     9541 ctaagctcat tgcagctagc gacatttgca tcatagcaag atagcattga agttgtgcgt
     9601 aatgatagag ttcattatca ttcattgcat tggttttatg ggtgtaaatt tttaaaattt
     9661 tttgaaaatt ttcttcgcta gaacctgaga aacgacgcac ttgtttttgt gcaaattcat
     9721 ctttgctttg aagatctttt cttgctagaa aaataatatt atgactcgca cttgctacat
     9781 tttgttgatt gtaacataga gttgagagtt taagattgtg ttctttttgt tctaatacta
     9841 caaatttcca aggctcaaat ccatgtgagc ttggggctaa gactccactt tctaagataa
     9901 aatgcaaatc cttttcattg attttttatc attaaaaagt ttacaagctc tgcgttttga
     9961 aattagttct ttaaaattca ttttattcct taaaatcaaa aaataataat attaattata
    10021 aaatgcaaag cttaatcaaa aaatattata gtttgatatt tttcttaaaa acaaaaccgg
    10081 atttttcaaa acccattttt tggatataaa attcatgagc ttgtgttcta aaaaaacttg
    10141 aacttagttc taattcttca tatccttgat cttttgccca aatttggatt tttttcaaaa
    10201 aagcttgacc tatacctttt cctcttaaag cttcatctac gacaaaatca caaatataaa
    10261 gacaatgatt atgataaagt acattaaagg gcatgactcc acaagctgct ttgtagcttc
    10321 cctcattttc ataggcaaaa agtttataat gttgagtttg tgtagcaagt tggattttgt
    10381 ctaaaaaatc tttcaaagat aggttatttc ttaattgttt tatcaaggga taaatttttt
    10441 ccaagtcttc ttttagctta atttctttca tttttaaatc ccttaaattt caaaaatctc
    10501 aggttttaat tttaaaagta ggcaaaaagt tgccaaaaca gcttgttctt gcataaattc
    10561 acgatctcca tctaaataaa gcgtttcttg gataaaagtt ccatctctaa acattgcacc
    10621 tatataaata gtgcctgatt ttatttttcc ctcatctttt tcgccaacta ctccgctaat
    10681 agctaaggca aaatcaggat tagctgtttt aaaaatacct tttagcataa aataaacaca
    10741 acgttcactg tattcgccat tattttctaa gacgctttcg ctaattccaa gccattcgtg
    10801 tttgatgcgg ttggaataac ttataataga tccttcaaaa atttcactta cacctgaaat
    10861 tttggttaag gtgcttgcac aaagtccacc tgtgcaactt tcagcaaaag aaatttttaa
    10921 ttttttttct aaaagtttag agcttataaa atgtatagga tctttaccta aaaatacctt
    10981 ttgtccaaaa agatttttta cgctatttaa aaaaccatca agttttccaa aattagcgca
    11041 agtggcctta ataagcacaa gattatctaa aagcttggtt gattttatac ttatctcata
    11101 agattttgtt agggtttgca gtagcaatat agcgctttca tcatccatgc caaaaatgca
    11161 aaaatatgca aaatttaatt ttatatgccc aagaagattg ggtaattttt cgcttggatt
    11221 tattttaacg acattgattt ttgaatttga aaaattacac acaaagctat ttttactaaa
    11281 ttctgcttta tctggaacca aggtatcatc ttttaagata agattatcat catttaaagt
    11341 tgctaaaatt ttagcaacag tcgcataatg caaagggctt gtaaataaag tgataaaatc
    11401 atactgattt aagagatttt caagcaaaaa gggtaaatct ttatcggttt tattttgtat
    11461 gcgaatttcg ttgatttctt taaatttttc ttcataagtt ctataaatat aatttttgaa
    11521 tttttcgttt atagtaagct catctcctat aagataaagc aaatgtttca taaattttcc
    11581 tttttttctt ataattatag ccaaaaacaa agtagaaatt aaagctaatt tgagtagaat
    11641 ttaagattat taaaaattag gtggaaaaaa tggactacaa agaaactcta cttttgccca
    11701 gcactacttt tgctatgcgg gcgaatttag cggaacttga accgcaaaga tttaaaaaat
    11761 ggtttgagca aaattatgct tatgaaaaaa tgaaagaaaa tcgcaaaaat gcgaaaaaaa
    11821 gttttacctt acacgatggc cccccttatg ctaacggaca tatccatata ggacatgctt
    11881 taaataaaat tttaaaagaa actattatca aaacgcatta ttttaaaggt gaaagtgtgc
    11941 gttttactcc agggtgggat tgtcatggtt tacctataga acaacaagta gaagtaaagc
    12001 ttggagaaaa gaaaaaaagc ttaagcaaga aagaaattcg tgagttttgc agacaacatg
    12061 cgagtgaatt tgtagatatc caaagagaag aatttaaaaa tttaggcatt attgcggatt
    12121 gggataagcc ttatttgact atgaaatttg agtttgaagc agcgatttat agaactttat
    12181 gcgagattgc taaaaaaggc ttactttgtg agcgttctaa acctgttttt tggagttggg
    12241 cggcaaagtc agctttagcg gaagctgaag tagagtatca agataaagaa gattattcta
    12301 tctttgtggc ttttgattta gatgtaaaag cttgcgaaaa attaggcgtt tcaaaagcaa
    12361 gcgcagtgat atggacaact acgccttgga ctttggtggc taatcaagct atagctttaa
    12421 atcctaatga aaattatgtg atcactaaag aaggtttgat ttttgcaagt gctttactta
    12481 aaagtatggt agaaaaagga cttacaagtg gagaaattca aaaagaactc aacgcaaaag
    12541 aatttgaaaa acttgaagct atcaatcctt taaatggaag aaaatctgtt ttaatcatgg
    12601 gtgagcatgt attgatggat ggtggaagtg ggcttgtgca tactgcacca ggacatggcg
    12661 aagatgatta ctatgcttgt ttgaaatacg gtattgaagt tttaatgcct gttgatgatg
    12721 gtggatgtta tgatgaaact ttaagagcta aagagctttt gccttctcat ttgcttgaag
    12781 agtttatagg tcttcatatt tttaaggcca atgaaaaaat tttagaactt ttaggcgaaa
    12841 aacttttaca ttcttctaaa tttatacact cttatccatt ttgttggaga acgcataagc
    12901 ctgtgattta tagagctact aaacaatggt ttattttaat ggatgagcca aaacttcaag
    12961 gaaaaacttt aagagagtgt gcaaaagaac aacttttaaa aacaaccttt tatccgcaaa
    13021 gtggggtaaa aagaataggt tctatggtgg aaaatcgccc agattggtgt atttcaagac
    13081 aaagggactg gggaacgcct atagcctttt ttagagataa aaacactaaa gaagtcattt
    13141 ttgatgatga gctttttgac tttgtagcgg ctatttttga aaaacacggc gctgatgcgt
    13201 ggtgggagtt tgaaatcaaa gatttaattc ctacaaattc aaaatacaaa gctgaaaatt
    13261 tagaaaaagt atatgatatc ttagatgttt ggtttgatag cggaagtact tttaatgcag
    13321 ttttaaatag cggactttat gacgcaggag aaaaaagagc aagtatgtat ttagaaggaa
    13381 gcgatcagca tcgtggttgg tttcaaagct ctttgcttgt aggtacagcg atcaatgaaa
    13441 gcgcacctta tgaaagcatt ttaactcatg gttttaccac cgatgaaaaa gggcaaaaaa
    13501 tgtctaaatc taaaggcaat gtgatcgctc ctgaatatgt agcaaaaacc tatggagttg
    13561 aaattttaag actttggata cttttaagtg attattcaag tgatttaaaa atttcagaca
    13621 atatcttaaa acaagtgggt gaacaatacc gcaaaataag aaacactata agatttttac
    13681 ttgctaatac caatgattta aaagatttag aagttaaaga atttagtttt attgataaat
    13741 ggatattaag tcgtgcaacc aaagttttta aagcaagtaa agaggcattt tttgcttatg
    13801 aatttgctaa aggttttagt ttgcttttaa attttttaag tgcggattta agtgggattt
    13861 atcttgatat cagtaaagat aggctttatt gcgatagtga aaatgcccaa agaagaaaat
    13921 ccgctcaagt ggctatggct ttgatagcaa aagagctttt aaatttactt gctccaaatt
    13981 taagctatag tgtagatgag gctttagaac atactaatgt tttaatcaaa ggcgatgcaa
    14041 aagatgtatt tgatctaagt ttaactcagg attttgatta tgattttggt atagatgata
    14101 catttttaat gagtgctaga gagaaatttt ttgaacagat tgatatactt aaaaaagata
    14161 aaatcattaa atctactttg gaattaaatt taaacatcag ttttaataaa ttcccaaatg
    14221 aggaattagc cgattggttt atggtaagtc aaatcagcaa tgaaaatgaa gaaattttgg
    14281 ctgaatttga agtagagaat gagaaattta aaatcaccaa agcttcactt tgtaaatgcc
    14341 caagatgttg gaaacttcaa agtaaagatg aagaaacacc ttgtttaaga tgtgaagaag
    14401 ttttaaaagg gattcaatgc tagaaaatcc tattccaaat agcattatca tcacaactat
    14461 agcggtggtt ttggctttta gtgctttagc agtatttttg atcaaaaaaa caaaggaaaa
    14521 taaatgataa ctttaaaaga agctttaaaa tactccaaag aagaacttga aaatttaaaa
    14581 aaagaactca atgaaaaagc aaaaaaagaa aaaaaaatag gtgcttatat cgaacaattt
    14641 ttagataaag acttaagtgt ttcaggtgaa ggtgtgcctg tagctataaa agataatatc
    14701 agcgtaaagg gctgggagct tactagtgcg agtaagattt tacaaggtta tatcgctcct
    14761 tatgatgcaa gtgtgattgt taatttaaaa gctaatggtt tttctccttt tgggcgttgc
    14821 aatatggatg aatttgctat gggaagttca acagcgagtt cttattatgg caaaacttta
    14881 aatcctttaa attttgagcg tgtgccaggt ggttcaagtg gtggaagtgc tgctgcggta
    14941 gcgggtggct tggctttggc aagtttgggt tctgatacag gaggatctgt acgtcagcct
    15001 gcagcttttt gtggttgcgt aggatttaaa ccgagttatg gaagagtgag tcgctatggc
    15061 ttagcttctt attcttcaag tttggatcaa attggggttt taacgcaaaa tgtagaagat
    15121 gcggcaattt tatatgatgc gatcgcagga tatgataaaa tggatagcac gagtgcaaat
    15181 atcgagttta tcaaaaccgc tccaaattta aatgcaaata aaaaattaaa aattgcagtg
    15241 attgaaaatt atgtcaatga tgcagatagt gaagtaaaaa acgcactttt aaaaaccata
    15301 gatatgttaa aagctaatgg acatgagatt gtatataaaa atttgcttga ttctaagttt
    15361 gatattgcgg cgtattatat catcgcaaca gctgaagcaa gtacaaattt aagtcgttat
    15421 gatggggtgc gttatggcaa gcgttctgaa aatatccaaa atttaaaaga aatgtatgta
    15481 aatacacgca gcgaaggttt tggagaagaa gtaaaaagaa gaattttgtt aggaactttt
    15541 gttttaagca gtggatatta tgatgcgtat tatattaaag cacaaaaagc tagagctttt
    15601 attaaggcaa aatatgaaga aattttgcaa gattgtgatc ttatttttat gcctgtaact
    15661 cctacaacgg cttttaaatt tgatactcaa aaaagcccta tgcaaactta tttagaagat
    15721 gtttatacta tctctgtaaa tttagcagga cttggaggca ttagtgtgcc tgttgcaaaa
    15781 gataaagaag ggcttaatat atcagcacaa ctgatttgca aagcttatga tgaacaaacc
    15841 ttgttagatg gggctttaag tttagaacaa atgattaaac attaaggatg aaagatgaaa
    15901 attgtaaaaa gagctttaac ttttgaagat gtattattgc gtcctgggta ttctgaagtt
    15961 ctacctaagg aagtaaaaat tcacactaaa ctaacaaaaa atatcacttt aaatatgcct
    16021 ttaatctctg cagctatgga tacagttacc gaacacagag ctgctatcat gatggcaaga
    16081 cttggaggac ttggagtgat tcataaaaat atggatatag cctcgcaggt tagagaagta
    16141 aaaagagtga aaaaaagcga aagcggggtg attatcgatc ctatttttgt aagtcctaag
    16201 gcaagtgttg cggaggcttt agaaattatg gcagagtata gaatttcagg tgttcctgta
    16261 gtagatgaag ataagaaact aataggcata ctcaccaatc gtgatttaag atttgagagt
    16321 gatttttcaa atttggttga aaatgttatg actaaaatgc ctttaatcac tgctccaaag
    16381 ggttgtactt tagatgatgc ggaaaaaatt ttcagtacca acaaagtaga aaaacttcct
    16441 atagtggatg aacaaggacg cttggaagga cttatcacta taaaagatct taaaaaacgc
    16501 aaagaatatc ctgatgccaa taaagataat tttggaagat tacgcgtggg tgcggctata
    16561 ggagtagggc aaatggatcg tgtggatgct ttagttgaag caggcgttga tgttgttgtg
    16621 cttgattctg cgcatgggca ttctaagggt attattgata cagtaaaagc aattaaggct
    16681 aaatatccaa atttagatct tatcgcagga aatatcgcca ctgcagctgc agcaaaagca
    16741 ctttgtgaag caggagtaga tgcggttaaa gtaggtattg ggccaggaag tatttgtact
    16801 acacgtattg tttcaggtgt gggcgtgcct caaatttcag ccattgatga atgcgtagaa
    16861 gaagcaaata aatttggcgt tcctgtgata gccgatggcg ggatcaaata ttcaggtgat
    16921 atcgcaaaag ctttagctgt gggtgcgagt tctgttatga taggatctct tttagctgga
    16981 acagatgaaa gtccaggaga gctttttact tatcaaggaa gacaatataa gtcttatcgt
    17041 ggtatgggct cacttggtgc tatgcaaaag ggaagttcgg atagatattt tcagcaaggt
    17101 actgctcaag ataaactcgt tcctgaaggt atagaagggc gtgttcctta tgtgggaagt
    17161 ataagaagcg tggtgcatca acttttagga ggtttgcgtt cttctatggg ttatgttggg
    17221 gctaaagata tagaagattt tcaaaaaaga gccgaatttg ttgaaattac cactgcagga
    17281 cttaaagaaa gtcacgtgca tgatgttact atcactcatg aagcaccaaa ctacaaggtt
    17341 aatcatcaat gagttttgaa gaaaatttaa aacacgctaa tgaatctttg gaaaaattaa
    17401 ataatcaaga gcttgcctta gatgaaagtg taaaaattta taaagaaggt ttagagagta
    17461 tcaaaaaagc aagacttgag cttgaaaaag caaaattaga agtggagcaa attgatgagt
    17521 aaaatagcag ctttacagtt tccaacttta gctttaagtg aatcaaggct tgattattat
    17581 cttaaagctt caaaagacaa tggagtaaat ttagtagttt tgggagaata tgtgatcaac
    17641 agttttttta cagaactttt gcatatgcca aaaaatatga taaaagaaca aagcgaagct
    17701 aaaaaagaaa gcttgattaa acttgctaaa aaatacgaat tagaaatcat cgctccttat
    17761 gtaagcgttg aagctaaaag ttataaaaaa ctttgcttaa aagttactcc aaatggtgtg
    17821 aaaagttatg aacagcaaat tttaatgcct tatgaacatt ggaatgaaga aaaatttttc
    17881 agcaacaaaa ctccatcaga attaaaaatt tttactttta attatgaaaa attaaaatgt
    17941 gctttgcttt ttggttttga gacacatttt gatatttttt ggcaacagat tatggcgaaa
    18001 aaaattgatt tggttatcgt tcctagtgct tgtacctttg aaagcaaaca aagatgggaa
    18061 gaacttttaa aaacaagagc ttttttaaat tctacaagca ttttaagagt aaatcgcata
    18121 ggcaaaacaa aagatgagtg gaatttttac ggcgatactt tgtttattaa tgcttttggt
    18181 gagatagaaa gtaaattggg ttctgaagaa gaaatgctta ttatagagcc taaaaaaagt
    18241 gatgaagcaa gaaaactttg gggttttgat aaaattctta agaattttta aagaaggtga
    18301 atatgagaaa aattttactt caaattttta tttttagtgt attatttata gtaactttta
    18361 ccattaatcg tgttttaatg caaaattctt ttatccctac tggtttaatt agtgataaaa
    18421 atgaaatctt tttaatgtat cttttaggtg tttttcatga tataagattt ttaagcgcag
    18481 cgtttttacc attcttgctt tgtggttttt taagtttaat tttttctaa
//
LOCUS       DAZAND010000020        18032 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.020, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000020 DAZAND010000000
VERSION     DAZAND010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18032
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.020"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            27..941
                     /locus_tag="ACHDOB_000568"
     CDS             27..941
                     /locus_tag="ACHDOB_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HFN3325508.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLAEQATVPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENITLAIAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            931..2709
                     /locus_tag="ACHDOB_000569"
     CDS             931..2709
                     /locus_tag="ACHDOB_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN3325509.1"
                     /translation="MTNKKSSFLIKFIILSTLVLTFILVLLAIIFNNYSSSKNNKDLI
                     NIVQQLEISDEKINSIFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYKMIVKQISIMQDNSSIYENNSLMK
                     ELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            2814..2981
                     /gene="dba"
                     /locus_tag="ACHDOB_000570"
     CDS             2814..2981
                     /gene="dba"
                     /locus_tag="ACHDOB_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HFN3325510.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            2993..4519
                     /gene="dsbI"
                     /locus_tag="ACHDOB_000571"
     CDS             2993..4519
                     /gene="dsbI"
                     /locus_tag="ACHDOB_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HFN3325511.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGVPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(4540..5214)
                     /gene="queC"
                     /locus_tag="ACHDOB_000572"
     CDS             complement(4540..5214)
                     /gene="queC"
                     /locus_tag="ACHDOB_000572"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HFN3325512.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESVFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            5290..6516
                     /locus_tag="ACHDOB_000573"
     CDS             5290..6516
                     /locus_tag="ACHDOB_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HFN3325513.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            6608..7132
                     /locus_tag="ACHDOB_000574"
     CDS             6608..7132
                     /locus_tag="ACHDOB_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YagU family protein"
                     /protein_id="HFN3325514.1"
                     /translation="MKKYFQKRYTLAFFIGILAGIFGAIVKWGWEVPFPPRNPNVFWP
                     ADALERVTPPKIFLEQLGLPTDWTYMFSGMQMPLSIFIVHVGFSIIFGVAYCMIAEKW
                     HRITMWQGAVFGFFVYLFAHVIIMPLIAEVPPLSEIPFDEHLSEIFGHIVWLWGMEIV
                     RRDIRNRITKEIEE"
     gene            complement(7144..8820)
                     /gene="ilvD"
                     /locus_tag="ACHDOB_000575"
     CDS             complement(7144..8820)
                     /gene="ilvD"
                     /locus_tag="ACHDOB_000575"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HFN3325515.1"
                     /translation="MRSDAIKKGHLRAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSRELIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYESKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAKQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            8980..9627
                     /locus_tag="ACHDOB_000576"
     CDS             8980..9627
                     /locus_tag="ACHDOB_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin family protein"
                     /protein_id="HFN3325516.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVSAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            9692..9931
                     /locus_tag="ACHDOB_000577"
     CDS             9692..9931
                     /locus_tag="ACHDOB_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HFN3325517.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITVE"
     gene            9964..10539
                     /locus_tag="ACHDOB_000578"
     CDS             9964..10539
                     /locus_tag="ACHDOB_000578"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HFN3325518.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(10540..11985)
                     /locus_tag="ACHDOB_000579"
     CDS             complement(10540..11985)
                     /locus_tag="ACHDOB_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HFN3325519.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNFKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLIYRSLWEEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAIIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADTAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAISKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(11996..16486)
                     /gene="gltB"
                     /locus_tag="ACHDOB_000580"
     CDS             complement(11996..16486)
                     /gene="gltB"
                     /locus_tag="ACHDOB_000580"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HFN3325520.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKNANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHIAYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            complement(16621..17928)
                     /locus_tag="ACHDOB_000581"
     CDS             complement(16621..17928)
                     /locus_tag="ACHDOB_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HFN3325521.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKPREYQE
                     IEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT         6153 a         3218 c         2684 g         5977 t
ORIGIN      
        1 aacttaaatt aaggcagaaa tttatcatga aaaaaataat aatgatttta tgtttatctt
       61 atgcaaatat agtctttgca gtagatatga taacccctat tccaaattcc atctcttatg
      121 ataaagaaaa agctaaactt ggaaaaagtc tttatatgga taaaagttta tccaaagatg
      181 gaaaagtttc gtgcaatact tgccataggc ttgatcaaca cggcgttgat ggacttgaat
      241 tttcaatagg agttgataat caactcgata aaccctttaa cactcctaca acctttaatt
      301 ctgtgtttaa ttttgtgcaa ttttggaatg gtagagctaa agatttagca gaacaagcta
      361 cagtaccttt tttcaatcct aaagaaatgg ggctaagtcc tgaacttctt ttacaaaaag
      421 ttaattcaaa tgaaaattat gtaaaaactt ttaaaaaact ttatggagaa gttacggtag
      481 aaaacataac tcttgcaatc gccgaatttg aaaaaacctt gatcactcca aattctcctt
      541 ttgatcgcta tcttagcggg gatcaaaatg ctatttcaac tcaagctaaa aaaggttacg
      601 aagattttaa agctaatggc tgcatctctt gtcatcaagg tcaaaatata ggtgggaata
      661 tgtttcaaaa aatcggtatt tttgaagaat acccaaacca agaagattta gggcgctatg
      721 aaatcacaaa aagagaagct gataaaatgg tatttaaagt tcctagtctt agaaatatag
      781 ccaaaaccgc accttatttt catgatggat ctatacctac tttagatgct tgtgttcaat
      841 ttatggctta ctatcaacta ggaaaatttt tagatcaaga aacagttgac aatatagttg
      901 cattcttaga aagcttaaca ggagaatatc atgacaaata aaaaaagttc atttttgata
      961 aaatttatta tcttatctac actagttttg actttcattc ttgttttatt ggctattatt
     1021 tttaataact attcttcatc taaaaataac aaagacttga taaacatagt tcagcaacta
     1081 gaaatttcag atgaaaaaat caattctatt tttcaaaata gttttaattt tatcaactac
     1141 gatccaagtg tgcaagcgat aaaaaaaatg caagaaaact ttacaaaact taaaactttt
     1201 gggattgaca taaacaaagc agaagaaatt tttaatgcca aactaatcca gcttaattat
     1261 tttaaatccg caaattccat agcagtaaat tcaaaacttt atttatttga actagctaaa
     1321 aattattttg aagaattgga acaaaaccat gaaacaaata aaaacaacta taaaacaatg
     1381 agttctatgt taagcgttct ttcaactgaa aatattttac aaaaaacaac actaaatcaa
     1441 ctcaacaatc ttatgaaaga aatcaaaaat gatacaaaaa gtgaaaattt acaacttttt
     1501 ttaaaacact ataaaatgat tgtaaagcaa atttctatta tgcaagataa ttcttctatt
     1561 tatgagaata attctctcat gaaagagtta aaacaactta acacttttac ccaaaatact
     1621 atagaacaat ctaatttatt taaattttat atcgctttag cagtatttgg aattactctt
     1681 gtattatttg tattttttat tttattaaca ctaaaaaaag tcatcatgcc aattcatact
     1741 ttagaaaaac taagcgctaa tttagctagc aaagaagcca atctacactc tcgtttaaat
     1801 atagatccaa aaagtgagct tggacaaagt gctcaatata ttaattcatt tatttccacc
     1861 gttcaaaact caatcataga agccatagaa aatgctaaat caagtcatca aaattcacaa
     1921 aaactcaaaa acaactctat gatgcttgaa aacagctcta attcgcaaca tgaacaaatt
     1981 caaggagtta aagaaatcac tcatgtttta gatgatcata tcaatcttgc gggaaattta
     2041 gcacaagaaa gtatagaaaa tatgcaagat atgcacatac taatggataa agtagaactt
     2101 actctatctg aacttgtaaa tttaataaat gaaaacaatg aaaaagaaca aaatatagta
     2161 gccaatatgg acaatctaac ccaaagtgcg gataatatta tagaaatcac aaactccatt
     2221 aaagacatag ctgatcaaac taatttactt gccctaaatg cagctatcga agctgcaaga
     2281 gcaggcgaac atgggcgtgg atttgctgtt gtagccgatg aagttggaca gcttgctgat
     2341 aaaacaagta aatctctttt aaacatcaat gctactgtta atactatagt ccaacaaatc
     2401 aatgacaaca aagccttaat ggatcttatc catgattcta tgaaagaaac ctcttcaaaa
     2461 accaatgatt tacaacaaga acttgtaaat tctatgcata aattggaaag ctctatagaa
     2521 tcaacccaaa ccatgaaaga taaaagcatg gaagtaaaag ataaaatgct tatcttagga
     2581 acaaatatag ataaagttaa cgaacttgca aattctgtta aagatttatc atgtgaaatc
     2641 aataatatct ctcaaaatgt tctaaatggt gcctctaaac tctccgaaaa attaagtagc
     2701 tttcagtaac ttttttcacg ttaatttaac ttaacgtgaa atttcaataa aaatttattt
     2761 ttaatttatg tttttcaagt aaaattagca gtttttattt caaaggagat actatggagt
     2821 ttcttgaact tttattagtt ttaatcgcct tgatactgat tatcaaaaaa ccagaaaaag
     2881 aaaatttggc ttttggtttg gtaatggtag cttggctttt aatggttttt ttctatgttg
     2941 gccacaaaac aggcgcacta ttaacaataa tgaatctgta aggaagggct aaatgaacga
     3001 aatcaataaa acaaaaaatt tctacacact aatgtgttta gcaggctttt tgattatact
     3061 cttgcctgta ggtattgcaa atttgatatt tggttatatg ttgggcgata gtccttgcac
     3121 gctttgctgg ggacaaagag aagcaatgat ctttatcggt gtaatggcgc ttttcattgt
     3181 tcgttatggt atgaaaggta aataccttgc tgctctttta atcatgacag cagtagggct
     3241 ttatcaatct tttgctcact atggtaatca cgctcataga gatttagatc aaggttttgg
     3301 tttagcagtt tttggtatcc atacttattt ttgggctgaa gtagtatttt gggctgttgt
     3361 attgctctta ggtgtgattt ttgcttttgc tcctaaattt aatgcttttg aagctgaact
     3421 aaatggagaa aagtttagaa aatatactaa atttagcttt gcagcagttt taatcagtgc
     3481 tatcatcgta gcatcaaatg ttttccaagc ctttgttagc acaggtgttc ctccttatgt
     3541 aggacaaggc gatcctgtaa gatttagttt aaatccaaaa tacatcattt ggagtaaaga
     3601 aggttggaat ggtttatggc aaaatatttc tttcttagga aaacgcgatg ttaaagctcc
     3661 tgattatgct tttgcacctg caagtgaaaa acttggcata aaatttgata atgatatcaa
     3721 caatgctcca tttgcaaaaa tcaatgatga gcttaaaatc acaaatgaac aaaccataaa
     3781 ttttgacaaa gccatcaata ctcttgatta tatcaataac gaatttgtag caagttctaa
     3841 atgggatgta gctttcttag ataataattt tagcgttaaa gaaggttttg aacttgatcc
     3901 ttatttttca gcttctatcg atccaatcat cggtatcata ccttatatga acgataaatt
     3961 cattcttatg ggctcaaaca aatctttctt aagatttgca aaaaatccta atgcaagtga
     4021 agaagatatc gctaaacaat acgctgactt tgtaaaaggc aatgataaat ttaaaggtca
     4081 aggcgaaagt ttaggtcgcg gaagacttga taccgtaaga gcaaaattta accatgtagc
     4141 aagtatgact acagatggaa attatcttta tcttgcaact gttccaaaca acaaagacgc
     4201 taaaactttt gtaatctcta aagtttcttt aaaagatcgt gttctttcag gagaatttac
     4261 tccaaaagca aatcttaaag aaggtaaaac tttaggcgat ctttatgtaa cttctatgac
     4321 ttttaaagat ggggaaattt atgcacttag caaaaatcac aatgtgattg ccgtaattga
     4381 tccagtcaaa gaagaagtag tgaaaactat cgctttccca agctctatca ctaatgctag
     4441 aagcattttc tttaaagatg gaaaaatcaa tattctttct tatcaagatg gagcaaacaa
     4501 gctttatact ttaaactaag ctttaagtcc tagtgaaaac taggacttat atttaatctt
     4561 atctttaaat cctgcttttt caaaacctct taaacgaagc aaacaactat cgcactcccc
     4621 acaagcttca tcttcactct cataacaaga ccaggtaagt tctaaaggta cattttcttt
     4681 taaggctagt tctacaattt tagctttgtt tagtctaaca agcggagttt ttatacaaac
     4741 tttgaaattc ttactcgtac cttcattgat aaattcttgt gccttttgta taaactcatc
     4801 agtacagtca ggataaccac tgccatcttc ttctaccacc cctataaaaa cactctcaca
     4861 attttccttt tcagccaaag atcctgctat acttaagaaa attccattgc gaaaaggcac
     4921 ataagtgata ggtggagtat cgcttgtaca aagctcattt ttagggatgt ctatactttt
     4981 atcggttaag gcattgcccc ctatatcttt gataaaactc acatctaaaa tataagattt
     5041 ttctactttt aaagccttgc aaatttgctt aaaacattct ttttcttttt cttgagtgcg
     5101 ttgttcatag tcaaaatgca aagcgataat ttcataacct tcttttttgg ccagataagc
     5161 acacaaagta ctatccatac cgccacttat gatacaaagt gcttttttac tcatttttat
     5221 ccttaaattt gctataattt cacaatttta acgaaaattt ttaaatttaa attgcaaaaa
     5281 ggcaaaagca tgataaacat aaaactcata gaacacattt ttaaagccgc ttctatcagt
     5341 cgttggaatg attatccaag aatggcaaat ttggttgaac ttgacaaaca agctcataaa
     5401 ttcatcatcg catattttat cgctaaaatg gaaaaagatg tggatatgag agtgattata
     5461 gaagggggaa tttttgagtt tttaagtcgt gttgtggtaa ctgatatacg ccctgatgtg
     5521 tatcatgaaa tcgtgcgtca aaaaaaagct gaagttaatg cttgggtttt aagcaaaatc
     5581 gaacctatga tagaagatat agaagatggg gaatttctaa agcgttttga agcgtattta
     5641 aatggtaatg cttatgctaa agaaagactt atcttaaaag cagcttcata ttttgctaca
     5701 agatgggaat ttaacatagt ttatcaaacc tcagcttttt taaatgatat tgatgagatt
     5761 aaaaacaaag ttgaagaaga attagaagat tactatgagc ttataggagc tagaaaaatc
     5821 gctttaaatc aaaaaatagc caaaattatt gatcttagcg gaagacttcg ctttcaaaaa
     5881 cgttgggctc aaactccacg cataccagaa accgcggttt taggacatat gcttgtggtg
     5941 gcgattttag gatattttta ctcgctaaaa atcaaggctt gcgataaaag acttgagaat
     6001 aatttttatt gtgctttgtt tcatgatttg ccagagtctt taacacgtga tattatcagc
     6061 cctgtaaaat acggcattga tggacttcat gatatcataa atgattatga aatgaaactt
     6121 attaatgaaa gaattttacc ctttgtacct gagggtttaa gggctgagtt ttcttatatt
     6181 ttaggcatta gagaaggtag aaacggtgag tcaaattttg taaaaaatga gtttgaaaat
     6241 cgcacttata aaaatgctaa aatcgagctt tgcagcggaa gtttaagctc ttttaatgaa
     6301 aatgaatttg gtgctataga tggtaaggcg cttaaatact gcgataaaat tgctgcttat
     6361 atagaagcag gacttagtat aagttatggt gtaaagtcta aagaacttga aagtggtttt
     6421 ttaggaatgc atgagttttt taaagaaaat cctaccatag atggggtgaa tttttttgaa
     6481 atttgcgaaa gtttaagaga atattttaaa atttaaataa gatttttata ctcctatttt
     6541 caatatgttt taaataaaaa tattataaat tcaaatttta ttttgtataa aacataaagg
     6601 agttattatg aaaaaatact ttcaaaagcg ctatacttta gcctttttta taggtatatt
     6661 agcgggtatt ttcggagcta ttgttaaatg gggttgggaa gtaccttttc ctccaagaaa
     6721 tcccaatgtt ttttggccag cagatgcttt agaacgtgtt actccaccta aaatttttct
     6781 agaacaacta ggcttaccta ctgattggac ttatatgttt tcaggtatgc aaatgccttt
     6841 gtcaattttt atagtacatg tcggtttttc tattattttt ggagtggctt attgtatgat
     6901 agcggaaaaa tggcaccgta ttactatgtg gcaaggtgca gtttttggat tttttgttta
     6961 tctttttgcc catgttatta taatgccttt aattgcagaa gttccaccac tttctgaaat
     7021 tccttttgat gaacacctgt ctgaaatttt tggccatatt gtttggctgt ggggcatgga
     7081 aatagttcgt agagatataa gaaatcgtat aaccaaagaa atagaagaat gaaaggaagc
     7141 ctttcattcc atatctaaaa ccgcaccttt actagcattg ctaacaagtt tttgatacat
     7201 tctaagccat cttgaagaca cctctttttg aggcaatgca aattcttttt tacgtttagc
     7261 aatttcttct tcacttacat ttgcatggat agtataagca tctacatcaa tttctatttc
     7321 atctccatct tttaaaagtc ctataagacc accttcagct gcttcagggg aaatatgacc
     7381 gacgcttaaa ccccttgtag ccccactaaa acgaccatcg gtgattaaag ctacatcagc
     7441 acctaaaccc atacccatta aaagtgaagt aggacttaac atttcttgca taccaggacc
     7501 cccttttgga ccttcatagc gtattacaca aacatttcct ttttgcacct tgcctttaat
     7561 aatgcctttt atagcttcat cttgagagtt aaaacaaaca gctttgcctt taaattttct
     7621 ttctccgatt attcctgcgg tttttataac acaaccttgc ttggctaaat ttccaaacaa
     7681 aatggcaagc ccacctactt ttgagtaagc attatctact ttacgaatga tattttcatc
     7741 tttgattttg gcatttttta agcgttcttt gagactttct cctgtaatgg tcagtgcatc
     7801 aagttctaaa atatgtcctt gtctgcttga aatttcagcc ataactgcac tcacaccgcc
     7861 tgctttgtgg atatcatcca tataaacact atttagcgat ggggctattt ttgctatgtg
     7921 tgcaactttg cttgagatga aatttaaatc tttaatatct agtgctaccc ctgcttcacg
     7981 cgaaatggca agcatgtgta aaactgtatt gctacttcca cccattgcca tatctactac
     8041 catagcatta cgcacagctt tttgagtgat gatattacga attttaaaac gttcatctag
     8101 ggcgatttca caaatacgac gcgctgcttt tcttaaaagc tcttctcttt ctttacttaa
     8161 agctaaaatg gttccattgc cttctagtgc tatacccata gcttcgcata aggtattcat
     8221 agaatttgct gtaaacattc ccgaacaaga tccaccactt ggacaggctg aacattctat
     8281 atctttaaat tcttcttcac taattttttt ggattcataa gcccctacag cttcaaaaac
     8341 agagctaagg ctgatctttt ctcctttttt ggttactcct gaagccatag gcccaccact
     8401 tacaaaaatg gttggaacat tgacccttaa agctcccatt aacataccag gagtaatttt
     8461 atcgcagttt ggaatacaga ttaaagcatc aagttgatga gcattcatca ccgtttcaat
     8521 agaatttgcg ataagttcac gacttggtaa agaataaagc ataccttcat gtcccatagc
     8581 tataccatca tctacgccta tggtattaaa ctcaaaaggt acgcaaccat ttttgcgtat
     8641 ctcatcttta atgattttag cataatcatt taaaaaataa tgccctggga ttatatctat
     8701 atagctattt gctacaccta taaaaggttt gtcaaaatct tcatctttca aaccacaagc
     8761 acgaagtaaa gaacgattag gtgctcttaa atgtcctttt tttatcgcat cgcttctcat
     8821 tgtaactcct gataataatt ttttaaaatt atatttagca aagcttaatt tttgtgaaat
     8881 ttattttgat atacattttc ataaatgata aaaattatta attgacaaaa atattttttt
     8941 ataatacaat actttttgat aatcaaaaaa ggagtcaaaa tgagacaata tgaaacctat
     9001 aaatgccaaa aatgtggtaa tgaagtagaa gttcaaaatg taggtggagg taagcttagt
     9061 tgttgtggtg aagaaatgaa atgtatcact acagatttaa ctgcagtaaa tttgatgaaa
     9121 gcttttgcgg gcgaatctat ggcgagaaac aaatacgatt tatttgctga tgtagctgaa
     9181 gaagaaggtt ggcatgcggt tgctagacat tttagagaag cagctgaaaa tgaaaaatgg
     9241 catgcaagag cagaatttaa agcttatcat gaaatcgttg atggaaaacc tttagaagta
     9301 actacaaaaa acctagtaag tgctgcagaa ggtgaaaact atgagcacac aactatgtat
     9361 ccaaattttg caaaaattgc tgaagatgaa ggtaaaaagg ctatagcaag attatttaca
     9421 gctattggta aagtagaaat cgaacacgaa agagaatatc tagcacttaa aaaaatgctt
     9481 gaagaagaag aattttttaa tagcgaagta gaagaattat gggtttgtga agtatgcgga
     9541 catatacatc gtggcaaaaa agctccagca gcctgtcctt tatgtaaagc accaaaagag
     9601 tattttaaac gcgaattttt gggttaagtt aagaaattct tatccttttt aagataatat
     9661 tataattatt ttttaataaa aggataagaa aatgaaaaaa ttactatttt tattttttgc
     9721 tttaacggct tttctctttg gtgctgtaaa tatcaacact gcaacgctaa aagaattaaa
     9781 aagtttaaat ggtattggcg aagctaaggc taaagcgatt ttagaatacc gtaaagaagc
     9841 aaattttaca agtattgatg atcttaaaaa agttaaaggc ataggtgata agctttttga
     9901 aaaaatcaaa aatgatatca cagtagaata aaagggcatt tttgcccttc tttttagaaa
     9961 aatttgaaaa ctttatttga cacaaaagaa cttttaaacg aatttgatat aaatttaatc
    10021 ggtattgatg aagcaggacg cggtgcttta gcaggtccta tgatgatggc agcttgcaaa
    10081 ctgaacaaac aacttgatgg gttgtgtgat tctaaaaaac taagcgaaaa aaaacgcgaa
    10141 gaactttatg aaatcatcat caaaaattca aactatctca tacttgcttt ttcttcggaa
    10201 caaatcgacg cactaggctt aagcacttgt ttaaaaaaag gcttaaaact tataaaaaag
    10261 cattttaaaa cagaaaataa cttcttatat gatggaaaca ccaacctagg tataaacggg
    10321 ataaaaacac aaatcaaagc cgacactagc attttgcaag taagtgcagc tagcatactt
    10381 gcaaaagtta gtaaagatag ggtgatgaat ttcttagcta aagactttcc ttgttatgaa
    10441 tttgaaaaaa acaaagccta tggcacaaaa gctcataaag aatttatagc taaatttgga
    10501 atttgcaaac tccaccgaaa aagttttaaa cttttatgat tattttgcta aattttgatg
    10561 caaactcaaa gcacattcta taccatcttt tatagcccaa acaactaaag attgtccttt
    10621 tctagcatct ccacaagcaa agattttttt atgagtggtt tggaaatttt ctgtgcttat
    10681 gttgtttttc tcatctaatt tcactccaaa atttttagag atagcttctt cgcacccgct
    10741 aaaacccata gctaaaagca ctaaatccgc tttataagtt tttttagaat ttgaaatttc
    10801 gacatttata gctttgcctt ctttaaactc gcgttttaaa tcatttgctt caacaccttc
    10861 tacatgagtt tttcctaaaa atttctttgt cattttttga tattccctag gatctttgcc
    10921 atatacagca atggcttctt ctaaaccata atcagtagta aaaatgtcag cttttaaagg
    10981 ccaaggattg ttttggcttc tttgcaaagg tctttttgga cttctttcaa aacgcactat
    11041 agatttagcc ccttgtcttg tcgctacagc gatacaatcc acacttgtat ccccgcttcc
    11101 tataaccaag acatttttac ctttggccgt atctgcaccc ttgcctgttt ttaacaaagt
    11161 tttggtattt tgcgttaaaa aatcaagggc aaattcaacc ccttttagct ttctaccttc
    11221 tatatcaaga tctataggct tacttgctcc tgtacaaagc accaaagcat caaattcttt
    11281 tagaagtttt gaaaccttat ctttgctgtc tatattttca ttcactttaa attcaatccc
    11341 acttttttta agcaaatcca cccgtctttg aactatactt ttatcaagct tcatatcagg
    11401 gatgccatac atcaaaagtc cgcctatttt atcgcttctt tcaaaaacac ttactttata
    11461 acctagtgaa tttaaagtgt tagcacaagc aagcccagca ggcccacttc ctatgatagc
    11521 gatttttttg ccattgtatt gcttaggttt atttactctt actaaatttt ccttaaaagc
    11581 attttctata atggataatt cattattttt tatactcaca ctaacaccat ttatcgcaca
    11641 cacacaagaa tcctcacaag gagcagggca aacacgaccg gtaaattcag gaaaaggatt
    11701 ggtaagatca agtctttcat aagcttcttc ccataaagaa cgataaataa gatcgttcca
    11761 ttcaggaatg agattgttta aaggacagcc cacatctttt ccttcgctca tcacacccgt
    11821 atgacaaaag gctaccccac aatccataca tcgtccacct tgaatttctt gttctttttt
    11881 atccaaaggt atagtaaatt ctttgaaatt taaaaccctt tccttaggag caattttttt
    11941 aaaatccatt cttttaaagt ctaaaaaacc tcttgcattt cccatttttt actccttatt
    12001 tttgtgtgat tttcaaaaat gctgctaaat ttggatcttt ttcattttta caaagatcaa
    12061 gcatttttaa catcttttca taatctcttg gcatgacttt aaaaaagtct tttttatcga
    12121 atttttctaa aatatcttta gcctttttag aatctgtata agcgatatgt ttttctatca
    12181 cggcttttaa ttctttttca tccttagcat taagatcttt aatatccaca agctcggtat
    12241 ttacatgagc ttcattgtgt cttccaaaga tataaacaac gcccccactc ataccagcag
    12301 cgaaattcgc acccacatct ccaagaacta caacttgccc acctgtcata tattcacagc
    12361 catgcacacc tgttcctaaa accacagcta aagcccctga atttcttaca caaaatcttt
    12421 cccctgctat accatctaaa tacacttcac cttttgtagc tccgtataaa caagcatttc
    12481 ctgcgatgat attttcttca ggtgaaaaag tggcttcatt tgaaattttt gctatgattt
    12541 taccaccact taaacccttg cctaaataat cattgctatc acctataatc tcaagtttaa
    12601 taccctttaa caaaaacgct ccaaagctat tgcctgcatt gcctatagct ttgatatgga
    12661 tactatcttc atctaaagcg tcttttccat aagtttttaa aatttcactt gaaagcatag
    12721 tcgcaaaagt acggctttga tttcctactt ctaaagaaag tttgataggt tcttttttct
    12781 ccacagcatt tttacaaagt ggaagtaaaa ttctataatc aatcgttttt tcaagcttgt
    12841 tatctttata gtctttaaaa tgcacagcgg ttctattata agtaggcaag gattttaaaa
    12901 ttttatccaa atttagcttt cctgctttac cttgcacact tttttgacgg agtttatcca
    12961 cgcgacctat catatcatct aggcgttcaa aaccaagtct tgccatgtat tctctaagct
    13021 cctcagctat aaaatacatg aaattaatca catcatctac tttgccctta aaacgatctc
    13081 taagttctgt atcttgagta gctataccaa aaggacaggt atttagatga caaactctca
    13141 tcatcgtaca acctaaaaca atcaaaggcg cggttgcaaa accaaattct tcagctccta
    13201 aaagtgccgc tatggctaaa tcacgcccat tcataagctt tccatcagtt tctaatctta
    13261 ccctatctct aagcttattt aaaatcaaag tttgatgtgt ttcagccaaa cctaactccc
    13321 aaggaattcc cgcatgcggt atagaagttc taggacttgc acctgtacct ccatcataac
    13381 ctgaaacaag gattaaattc gctcctgcct tagccacacc tgcagcaacc gttcctatgc
    13441 cattttcgct tacaagtttt actgaaattt tagcgtcttt gttagcattt tttaggtcat
    13501 aaataagttg agccaaatct tctatagaat aaatatcatg atgaggaggt ggggaaataa
    13561 gcgtcacacc tgcagtagaa tgtctagcct tagctatcca aggatagact ttaaagccca
    13621 ttaattgtcc gccttcacct ggttttgcgc cttgagcgac tttgatttga atttcttttg
    13681 catgacttaa gtagtttaga tccacgccaa aacgcccact tgctacttgc ttaatggctg
    13741 agtttttatc cacaccctct ttgatttcat agcgttcttc atcctcgcca ccttcacctg
    13801 aatttgattt agcacctatt ttattcatag cctgtgccaa acactcgtgt gcttctttag
    13861 aaatagaacc ataactcatc gcccctgttc taaagcgttt aactatactt tctacacttt
    13921 caaccttatc tatactgata gcttcactaa aatcaaattc catcaaagaa cgcaaattaa
    13981 cttgtttttc atctactaaa gccgagtatt ttttaaagct tttatagtct ttgttgcgac
    14041 aggcttgctg aagattaaaa atcacaagtg gatcaattaa atgttcttct ttagcacttc
    14101 taaaaccatg aattccttta gaatctaaag ccttatgcgt atcgttaaaa gcatgtttgt
    14161 gtaaagcaat aagttctttt tcaaaatctt ctaaatccat accttcgatg cgtgaagttg
    14221 tagaagtgaa gtatttatca atcaccttag agcttaagcc cagacattca aaaagtgcag
    14281 agccattata actttgcaag gtagaaactc ccattttaga agcaattttg actatgccac
    14341 ttgaacttgc cttgatgaaa ttttctaccg ccttttcata acttaaattt aaatctttat
    14401 tggcaatgag tttttgtatg ctctcataaa ccaaataagg attaataaca gtcgcaccat
    14461 aacctaaaag acatgcaaaa tgatgaattt ctctaggttc accactttcg atgataagac
    14521 ttgtatgtgt tcttaaattt tttcttacta gatgattatg cactccagaa acagcaagca
    14581 aagcagggat ataagcgttt ttttcatcca ctcctttatc gcttaaaatg ataatagaaa
    14641 cacctttttt aacctcatct tctatcttaa cgcaaagttc atctaaagcc ttttctaaag
    14701 tttttttaga ataatcataa agtatagaaa attctttaac ttgaaattta tttaaagcct
    14761 taacttcaaa aagttcttca ttgcttatca caggcaaagc tatttttacg cgttttgcat
    14821 tgttttcatc gggttttaat aaattgcctt cgcttcctag ataaatcctt gtagaagtaa
    14881 cgatctcttc tcttatggca tcaagaggag gattagttac ttgtgcaaaa agttgtttaa
    14941 aataattata caaaggttga taagttttag aaagtatagc caaaggagta tctacaccca
    15001 tagctgctat agcttcttta ccattttgag ccatagcagc cacactcatt ttaagttcat
    15061 cataactcca accaaaagct ttttggagtt ttaaaacctc atcttctttt aaaaactgat
    15121 gtttataaac tccgcttttt tgtttttcaa gttcaactaa atttttaagc cattttttat
    15181 aaggcttagc attagcataa tgctctttga tttcattatc agctataacc ctacctcttg
    15241 ctgtatcaac gagtaaaagt tttccaggtt ctaagcgttt tttggctttg atattttttt
    15301 catcaagttt taaagcccct gtttcacttg aaagtatgag catatcatct tttgtaagat
    15361 aataccttga aggacgaaaa ccatttctat ccaaactcgc ccccataatc actccatcag
    15421 taaaaactat agcagcaggc ccatcccaag gctccatcaa taaagaatga tattcataaa
    15481 aagcacgctt tttgctttcc atattttcat ttttatgcca aggttctggc accatcatca
    15541 taaaagcttc ttctaaagta cgaccattta gagctaaaaa ttctaaagta ttatcaaaca
    15601 ttgcagaatc actgctaggc ttagctatga taggaaaaat ttcatctaaa ttttcaaaat
    15661 actcactttg catcaagcct tctctagctc ttatgctatc aacatttccg cgtatggtat
    15721 taatctctcc attatgcacc atataacggt ttggatgggc tctttcccaa cttgggaagg
    15781 tattagtcga aaagcgagaa tgcaccaaag cgatggctga tttcatattg acatctttaa
    15841 aatcaagata aaaatcgctc aattgagttg aaagaagcat tcctttataa actatggtgc
    15901 gtgaagaaaa acttgaaaaa taaaattttg gcacattaat agctcttttt tctataaggc
    15961 gacgcgtact ataaagcact ctttcaaact caagtcctgc acttatttta cttggttttt
    16021 tcacaaaggc ttgtaaaaaa taaggcatag cttttaaagc acttgcacct atatcgctag
    16081 gattaaaagg cacttctcta aaacctaaaa attcaagttt tttatccttt aaaccttgta
    16141 aaaatatctc ttttgcttct tcttttgcat cagtattggg tgataaaaac atctgtgcta
    16201 cggcataatc acccttttta ggaagttcaa aacccaattc ttgagtttta aaaaaatcat
    16261 gtggaatttg gatcaaaatc cccgccccat cacctgaatt ttcttcagct cctgcaccac
    16321 ctcggtgttc aagattcatc aaaatttcta aagcatcaca aataacctta taagaggcaa
    16381 taccgcgtat attagcaact gcagcgatac cacaggcatc gtgttcgttc tttgggtgat
    16441 ataaacctat gctttgatta ttttctagga tattttctaa atccattttg ctctccttaa
    16501 taagactgat ttaaattttg ttagctttat aaggattata gcatacattt ttttaaaatc
    16561 gatataattt ttatcttaaa aataaataaa ttaaaaaata ttttgataga tttgtaaaaa
    16621 ttataaaaac atggcgataa tactacctaa aatcaataat gggccattat agaaaataaa
    16681 agttggtatg caagtatctt taatgtgatc gtgttgttta tcagcattta atcctacagt
    16741 agttcccatg gttgtttcac tagctggact tcctgcatct cctaaagctc ctgctactcc
    16801 taagataaat ataataagtg ctgtactaaa accaagttcc aaacaaatag gacaaaaaag
    16861 cgtagctatg ataggtatag ttccaaaaga agtacctata cccatagtga tgataagtcc
    16921 tattaaaagc atgaaaaata ctgctaaaaa tttactttgc tccatccaag gaacgactga
    16981 atttacaaga tctactactg atccactttc ttttaaaact tctccatatc ctgcagcaac
    17041 aaggataaca aaagctataa aacccatcat tttaagccca tcatcaaaaa cttcattgac
    17101 ttttgaaaat tcaactccac ccaaaataac cattaaaaca aaacccaaaa gccctgataa
    17161 aggcaaattc atagtcaaaa tttgcaaaat taaagttaaa acaagcccag ctaaaacgcc
    17221 ccattcctta cgcgtcattt caagattttc taaatccact ttagcaattt ctatttcttg
    17281 atactctctt ggcttacgat aaaacacaaa aagcgctaga aaaagtcctg ctatcataca
    17341 aatagcagca aaatacatag tatttgtaac atcatttaaa gatacactta cattatttgc
    17401 atttaaatta tcttttaaaa gatcttgaaa agtaagccca aaacctactg gcaaaaccat
    17461 ataaggcgta gtaaggccaa aagttaaagc acaagcaacc gctctacgat caattttaag
    17521 tttattaaaa agacttaaaa gaggtggaat caacaaaggt ataaaagcta catgaatagg
    17581 aattaaattt tgagaaaaac aagaaatcaa agctatagac aaaagcaata aatatttttt
    17641 atgagatata aaatgactta ctatcttgat caaatatgca gttaaatttg tctttgaaat
    17701 cgctgcagca atggctccta agagtatata gctaagagct gtttttaaat tttctttcat
    17761 tccgcttata agtatattca tagtatctac gagttcaaga tgagaaaata cacctgcaac
    17821 aagagctgag atcaaaagac tcaaaagcac attaaaacga aacaaacaaa gtaaagtcat
    17881 caaaacaaca ctgataatga taggattagt aagtaaagtc aaaatcattc cttaaataat
    17941 tttaaaaatt taattgtaga aaaaacttag ttaaaatgta ataaaactcg aacatataat
    18001 gattttattt taatatgcaa aattataaaa at
//
LOCUS       DAZAND010000021        17946 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.021, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000021 DAZAND010000000
VERSION     DAZAND010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17946
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.021"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..192)
                     /locus_tag="ACHDOB_000582"
     CDS             complement(<1..192)
                     /locus_tag="ACHDOB_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HFN3325522.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECLKIIKLFKAKNI
                     LIFIPLHYEPNLIKFRHILN"
     gene            275..832
                     /locus_tag="ACHDOB_000583"
     CDS             275..832
                     /locus_tag="ACHDOB_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HFN3325523.1"
                     /translation="MKIKKILLLVAISCLFVACGNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISVKKENAVLNFNDEDKATLFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            832..1698
                     /gene="ftsY"
                     /locus_tag="ACHDOB_000584"
     CDS             832..1698
                     /gene="ftsY"
                     /locus_tag="ACHDOB_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HFN3325524.1"
                     /translation="MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            1698..3038
                     /gene="radA"
                     /locus_tag="ACHDOB_000585"
     CDS             1698..3038
                     /gene="radA"
                     /locus_tag="ACHDOB_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HFN3325525.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            3107..3787
                     /locus_tag="ACHDOB_000586"
     CDS             3107..3787
                     /locus_tag="ACHDOB_000586"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HFN3325526.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHAP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLVFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            3784..3975
                     /locus_tag="ACHDOB_000587"
     CDS             3784..3975
                     /locus_tag="ACHDOB_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325527.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(3997..4845)
                     /gene="metF"
                     /locus_tag="ACHDOB_000588"
     CDS             complement(3997..4845)
                     /gene="metF"
                     /locus_tag="ACHDOB_000588"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HFN3325528.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEVASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNALALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4855..7119)
                     /gene="metE"
                     /locus_tag="ACHDOB_000589"
     CDS             complement(4855..7119)
                     /gene="metE"
                     /locus_tag="ACHDOB_000589"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003871 -
                     5-methyltetrahydropteroyltriglutamate-homocysteine
                     S-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HFN3325529.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALIQ
                     KYGFAKDKILFAGLINGKNIYANDYAKSLKLIKELQKYTQNIVLNTSCSLLHVPYSTE
                     FESKLDSSYLKLFAFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            complement(7131..7901)
                     /locus_tag="ACHDOB_000590"
     CDS             complement(7131..7901)
                     /locus_tag="ACHDOB_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFN3325530.1"
                     /translation="MTLFTKAFCVATLFTSFAWANEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKKFNPEEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLDDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            complement(7912..8903)
                     /locus_tag="ACHDOB_000591"
                     /pseudo
     CDS             complement(7912..8903)
                     /locus_tag="ACHDOB_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family dioxygenase"
     gene            complement(9215..9709)
                     /gene="luxS"
                     /locus_tag="ACHDOB_000592"
     CDS             complement(9215..9709)
                     /gene="luxS"
                     /locus_tag="ACHDOB_000592"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HFN3325531.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            9824..11242
                     /gene="gatB"
                     /locus_tag="ACHDOB_000593"
     CDS             9824..11242
                     /gene="gatB"
                     /locus_tag="ACHDOB_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HFN3325532.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKARFIDELGIKESDAEVLISSLEMSRFFESLISQNL
                     NSKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            11239..12135
                     /locus_tag="ACHDOB_000594"
     CDS             11239..12135
                     /locus_tag="ACHDOB_000594"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HFN3325533.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGAKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILVELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGTSVQEATQSLLKQND"
     gene            12145..13323
                     /locus_tag="ACHDOB_000595"
     CDS             12145..13323
                     /locus_tag="ACHDOB_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HFN3325534.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDANGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILET
                     "
     gene            complement(13320..14846)
                     /locus_tag="ACHDOB_000596"
     CDS             complement(13320..14846)
                     /locus_tag="ACHDOB_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HFN3325535.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWIASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRSTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            14988..15794
                     /locus_tag="ACHDOB_000597"
     CDS             14988..15794
                     /locus_tag="ACHDOB_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HFN3325536.1"
                     /translation="MRGIFYIIALFSLLNADELTEALAKNNNQNSWEHFDYENTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQDNYNYSWGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(15791..17167)
                     /locus_tag="ACHDOB_000598"
     CDS             complement(15791..17167)
                     /locus_tag="ACHDOB_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HFN3325537.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIIAGIVLGYIDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVAQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVTAIGILLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
     gene            17436..17930
                     /gene="cetC"
                     /locus_tag="ACHDOB_000599"
     CDS             17436..17930
                     /gene="cetC"
                     /locus_tag="ACHDOB_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HFN3325538.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEKKSGINAGVSALMDIVSSYKMTYNELIFNL
                     QENN"
BASE COUNT         6036 a         2550 c         3028 g         6332 t
ORIGIN      
        1 attaagaata tggcgaaatt ttattaagtt tggttcataa tgcaaaggaa taaaaattaa
       61 aatattttta gctttaaata gttttattat tttaagacat tctttaaata ttttataatc
      121 ttgtttgaaa tttagttttg aatgtttgaa aaggcgtatt ttttgcaatg ccctaaaatc
      181 tgttttttcc attaatatgc ctttaaaaaa atattatctt atgtatgtta taattttagc
      241 atttttataa agaagaataa aggattgata aataatgaag attaaaaaaa tacttttact
      301 agtggcaata tcttgtttgt ttgttgcttg tggcaatgat aaagaaaagc agcaaaatga
      361 tgtaaattta agtaccgagg caagtatcaa tcaaagtgat gatatgaatt ttaaacttaa
      421 tttgattgat ggaggatcaa tttcagttaa aaaagaaaat gccgttttaa atttcaacga
      481 tgaagataag gcaactttgt ttgtattttt tactacttgg tgtacccctt gcattgctga
      541 aatccctcat cttaataaat tacaagaaaa gtataataat gattttaaca tagttggagt
      601 tttattagaa gataaatcta acgatgagat tcaaaaattt atagaacagc ataaaatatc
      661 ttataaagtc gctaatggtg aaaataacta tcttttagct aaagctttag gcggggtaaa
      721 tggaattcct actatgtttc tttacaacaa gcattctaaa ttgattaatc agtatttagg
      781 gcttattcct gaagaaatgc tagaaatcga tatacaaaag gctatacttt aatgtttaat
      841 ttttttaaaa aaggacttgc aaaaactctt gaaaatattg ttggagttaa aggagagaac
      901 aaaaaaataa ccaaagattt gcttgaagaa attttgcttg aagcagatgt aagttatgaa
      961 atagttgaag agataattta ttatttacca cctcaaaatg aagtaaaaaa agaagattta
     1021 aagcgtgtta tgggttctta ttttctttat gaaaaaaaag aaaccaatca agaaaaacct
     1081 tttgtagagc ttattttagg agtaaatgga gcaggaaaaa caacaagtat tgccaagctt
     1141 gcttatttat acaaaaacca aaatcaaaaa gtgattttag gggcgtgtga tacttttaga
     1201 gcaggtgcga ttgagcaatt aaaactttgg gcgcaaaaag tggatgtaga tatagtttta
     1261 actgcacaag ggcatgatcc ttcagcggtt gcttttgata ccatttctaa agcaaaagca
     1321 aaggattttg atagagttat tatcgataca gcagggcgtt tgcaaaatca aaaaaattta
     1381 gctcatgagc ttgaaaaaat tgtaagaatt tcaaacaaag ctttagaagg cgcaccccat
     1441 agaaaaattt tagttttaga tggaacacag ggaaatgctg gaattttaca agctaaagct
     1501 tttaatgagc ttgtaaaact tgatggtgtg attattacaa agcttgatgg gacagctaaa
     1561 gggggtgcac tttttagtat agcaagagag cttgagcttc ctatttttta tgtaggcgtg
     1621 ggtgagcaaa tgacggattt acaagaattt aatgcaagtg cttacttaga tactttatta
     1681 gatcctattt ttgaataatg gcaaaaaata aagcactttt tgaatgtcaa gcttgtggaa
     1741 atcaacaaag caaatggctt ggaaaatgtc ctgattgtgg agcttgggat agttttgtag
     1801 aattaaaagc tgagcaaatt aaagttttaa aagagcttgc gcaagttagt atgaaaacaa
     1861 gtgaggctgt ttgtattgaa gatgtggagt tagaacattt tacaagatac agcacagatg
     1921 ataatgagct tgatttggtt ttaggcggag ggcttgttga aggttcttta gtgcttatag
     1981 gcggaagtcc aggtgtggga aaatctacac ttttgttaaa aattgcttca aatttagcta
     2041 aacagggtaa aaaagtgctt tatgtcagtg gcgaagaaag taaagctcag attaaattaa
     2101 gagctgatcg tcttgaggct aatactccga atttattttt acttactgaa ctttgccttg
     2161 aaaatatttt agaagaattg cacaaaaaag attatagcat tcttatcatt gattctatac
     2221 aaactttata ttcaaataaa attacttcag cagcaggaag catcactcaa gtgcgtgaga
     2281 ttacttttga acttatgcgt gtgagtaagg cttataatat cagtactttt atcatagggc
     2341 atattactaa agaaggtgct atagcagggc ctagggttct tgagcatatg gtagatgtgg
     2401 tgctttattt tgaaggagat gccactaaag aaatcagact tttaagaggc tttaaaaatc
     2461 gttttggtgg aacgaatgaa gtaggtattt ttgagatgac tgctaagggt ttgatcagtg
     2521 caaaagattt ggcaaatcgt ttttttactc gtggaaaggc tatttcagga agtgctttag
     2581 gtgttgtgat ggaaggatct cgtgccttgg ttttagaagt tcaagcttta gtgtgcgaaa
     2641 gttcttatcc aaaacgcagc gctacaggat atgaaaaaaa tcgcttagat atgcttttgg
     2701 ctttgcttga aagaaaactt gaaattcctt tagggcatta tgatgtattt gtaaatatta
     2761 gcggcggagt aaaagtaagt gaaactgctg cggatttggc tgtggttgct gcgattattt
     2821 caagttttaa aaatcgccct ttgagcaaag atagtatttt tataggggag cttagtttaa
     2881 atggagaaat tagagaggtt tttagccttg atacgcgttt aaaagaagct aaaatgcaaa
     2941 aatttaaaaa tgccattgtt ccttctaagc ctttggaaga tatagggctt aagtgttttg
     3001 ttgctaaaga actttcgcaa gttttagaat ggatgtaaat tttcattaaa atataagtaa
     3061 gattttgcta gaattccgag tttagaataa aatttttgag gaaaccatga aagatttatt
     3121 tttatttagc tctttgcttg atgcaagtca tactttttct tatttttttc acataggttt
     3181 ggtagcttta attgctgtta tagtggctat gatggctact cgttctatgc aacttgttcc
     3241 acgcggtatg caaaatttag gtgaggcttt tttagaggga gttttatcta tgggtagaga
     3301 taccatggga agtgaaaaag gtgcaagaaa atatcttcct ttggttgcaa ctttggggat
     3361 tatagtgttt tttagtaata ttataggtat aatacctggt tttcacgctc caactgcaag
     3421 tttaaatttg actttgtcct tggctattat agtttttgta tattatcatt ttgagggtat
     3481 tagggcacaa ggttttgtaa agtattttgc tcatttcatg ggacctatta aacttttagc
     3541 tcctttggtg tttcctatag agatagtctc tcatctttct cgtgtggttt ctttgtcctt
     3601 ccgtttgttt ggaaatatta aaggtgacga tttattttta atggtaattt tagctttagt
     3661 tccttacata gctccacttc ctgcttatgt gcttttaact tttatggcat ttttacaagc
     3721 ttttattttt atgattttaa cttatgtata tttagcgggt gcaactgttg ttgaggaagg
     3781 tcattgatct atattttaga atttttcaaa ggtgcatctt tagctttaat gctttttggt
     3841 gcacttttct tcttttttaa atataattct tttttctatc tttgcttggg tattatacca
     3901 ggtttgcttt tatctttaat ttttgtttta cttatagaaa accataagct aaaaaatgaa
     3961 aataagttaa gataaaagca aaaaatagtt tattttctaa gcatgaagct cttctttaag
     4021 caaatgcttt acagcttcat aaattttaat agccgctttg gatttattca tagtataaag
     4081 atgaattcca tctacgccac ttgtgattaa atcgacaatt tgatcgcaag cataagcgat
     4141 acctgcatct tctaaagcca aagcattatt ttcatatttt tctaaaattt taacaaattt
     4201 aggagggatt ttagctccgc aaagttgaga aatttttaaa acctgtcttt tgttagtaat
     4261 aggcataata cctgcgtaaa taggtatgtc aatacctgct aaagcacaat tttgtttaaa
     4321 agtataaaaa tcttcattat cgtaaaaaag ttgagtaatg agcttgtctg ttcctgcatt
     4381 taccttagtt ttaagatggt gtatatcctc gatgaaattt ttagattcat tatgtttttc
     4441 aggatagcat gcggcataaa tttcaaagta ttcttgtttt tttataaaag aaattaaatc
     4501 actagcataa gaaaaatctt tacttttttc taaattttca catatatcgc ctcttagagc
     4561 aagaatttga ttaagatttt tttctttgca tttttgaagt atctgagtga ttttttcttt
     4621 actagaatgg atgcaaggta aatgcactat gctaggaatt tgatattctt cctggattaa
     4681 gcttgcaact tctaaagtat tttgtgagtt aatagagcct ccagctccaa aggttacgct
     4741 gataaaatta gggcttaatt gccctaaatc atctaagata gcatgaagat ttttgatatt
     4801 ttcatccttt cttggtggaa aaacttcaaa agaaaaacta cacatgaaaa ctccttataa
     4861 ttgttctcgt attttttgcg tagccgtaac taaattttta agagaggcta taacttcttc
     4921 ataggctctt gttttaagtc cgcagtctgg attgatccaa atttgctcct taggtaattt
     4981 gtttaaaatt ttttctatag ttaaacttaa ttcttctacg cttggaactc tagggctatg
     5041 tatatcataa actcctggtc ccacctcagt tttaaaacga atagctttta gggtatctaa
     5101 aagacttaag tttgatcttg aagcttcaaa agaaatcaca tcagcatcca tagcgtcaat
     5161 ttcttttaag atatcactaa attcactata acacatatga gtgtgaattt gagttttagc
     5221 ttttaccccg ctatgcacaa gattaaaagc aggaatagcc caatctaaat actcactatg
     5281 ccaatcactt tttcttaaag gcagtttttc acgcaaagcc gcttcatcaa tttgtatgat
     5341 ttttatacct gcattttcaa gatctaatac ttcatctctt atagctaagg caatttgctc
     5401 agtgctttct tttagactga tgtcttctct tggaaaggac caattaagta tggttacagg
     5461 tccagttagc atacctttta cgattttttg acttaaactt tgtgcaaatt tagaccaagc
     5521 taaggtgata ggctttgtgc gtgatacatc accccaaatt acaggaggct taacgcacct
     5581 tgtgccatag ctttgaaccc agccattttg agtaaataaa aagcccttta aattctctcc
     5641 aaaatactcc accatatcat ttctttcaaa ttctccatgc actaaaacat caagtcctat
     5701 ttcttcttga atttgtatgc attctttgat tttttgttgg ttaaattcag tgtagttttg
     5761 agctgaaatt ttttcttgct taaaggcaag gcgattagat cttacatcgg cactttgagg
     5821 aaaggaacct atggttgtgg ttggtaaaag agggagtttt aaaaattctt tttggattaa
     5881 ggcacgttct ttaaaactag gcgttctggt aaaatcttct ttttttaaag ccttaagcct
     5941 tgctttgact ttttcatcta aacgctctgg gatattttta aaaagctctt gattggctct
     6001 aaagagcgga ttttcttcgc tagaatttag aatttctttt aaatctttaa gttcttgaag
     6061 tttttcttta gcaaaggcaa aaagtttaag atagcttgaa tctaatttgc tttcaaattc
     6121 agtgctataa ggcacatgca aaagcgaaca agaggtgttt aagacgatat tttgtgtata
     6181 tttttgaagt tctttaataa gctttaggct tttagcataa tcattagcat agatattttt
     6241 gccgttaata agacctgcaa aaaggatttt atctttagca aagccgtatt tttgaatcaa
     6301 ggctaagctt tgtttacctt cgataaaatc aagacccaaa gcatcaaatt tgctttctaa
     6361 aagtttagga taaatatctc ttaagtctcc aaaatagctt tgaagtaaaa ttttaagatc
     6421 ttttttgtga tttaaaagct cttggtaaaa ttcttcaaac aaagcgatat cttccttgct
     6481 taaatcataa accaaataag gctcatcaag ttcaagccat gttactttaa gttcatttag
     6541 tttatcaaaa agctctatgt aagcgtttaa aagcttttct ttggcgagtt tttgagtttt
     6601 ttcatcttta aaggcaatga gtttaaaaag tgtgaaaatg cctattaaaa caggcttgct
     6661 ttctatgcca agctctttag cttcgagata ttctttaaaa attttatccc ctgttaaagc
     6721 tataatatca gcattatcgc actcaggcac caaataatga taatttgtat tgaaccattt
     6781 tttcattgct aaggctgtaa catctccatt ttctccttga taacctcgac tttgagcaaa
     6841 gtattcatct aaagcatcta aatttaaatt tttatacttt gtatgaacaa tgttaaaaag
     6901 cacagctgca tctaagacat tatcataaag tgaaaaatca ttactaggga taaaatcaat
     6961 gccagctttt tgaatttctt gccagtgtct aatccttaaa tccttagcac tctttaaaag
     7021 ctcctcttta gaactttggt ttttaaagta tttttcaata gcaaatttta attctctatt
     7081 tgcacctatt cttgggtaag aaatgattga atttttcata tttgttctcc ttaaaatgta
     7141 gggattaaag caccctgata tttttcttct ataaattttt taacttcatc gctttgcaag
     7201 gcctttacta gggctttgat tttaggaagg ttttcattac cttctttaac ggcgatgata
     7261 ttgccatatt cactatattt actttctgta taaagcccat cttttacagg gtttaaacct
     7321 gctaaaatag caaaattgct attaataaga gaataatcta catcatctaa actccttgta
     7381 agttgagcgt cttttaactc tacaaattta agcttcttag gatttttagt gatatctaaa
     7441 ggagtgatga gctcattatc cttaacttct ataagtcctt tgcttgctac aatgcgtaaa
     7501 gcacgacttt catttgtagg attattgggt atagaaatgc tttgtccttc ctcggggtta
     7561 aattttttat gttttttaga atatactgcc ataggttcta tatggatact agcaactttt
     7621 acaagatgag tgccttgtct ttgattgaat tcttttaaat aaggctcatg ctgaaaataa
     7681 ttagcatcta actcaccatt ttcaaccatt acattaggga ttaccccatc attgaattca
     7741 taaattttta aatcataacc ttgtttttga agcgctgatt ttataaatct taaaatatct
     7801 gcatgaggtg ttatagaaga gccaacttta agttcttcat ttgcccatgc aaaactggta
     7861 aaaagagtag cgacgcaaaa agctttagta aataaagtca ttttttctcc tttacgcaaa
     7921 tttaaatttt tctatcaagt cactatgata aatacttgcc acatcaggat gagagcgtat
     7981 cattctttta aaataattac ttgcaacatt tcttaaaagt ggattttagg atcagtatcc
     8041 atacctttac tttctttagc aagctctgga tttaacttaa aaataggtat atccttatca
     8101 agctgcactc caagaaaata agctatgcta aagcgttctt ttgggcttaa attcacgcgg
     8161 tgaatagtag cttttaaata gccattggta gctagttcta aaaattctcc tatattaact
     8221 acaacgctat tttcaagtgg gggtatacta agccatttac catctataaa agcctcaagt
     8281 ccgctttgtt tttcttgaaa aacaaaagtg ataagcccac catctttatg tgaacctacg
     8341 ccttgagtga tattttttga gctttttgga taatgtatga ttttacaatg ttcgtaagaa
     8401 ttttctccat aaagtttatc aaaagcattg ttaggtagat caagagcttg agcgaaggct
     8461 tttaaaagct ttaaacaagc ttttttggtt tgtttgtgcc aagttaagaa agttttttta
     8521 agttctggaa tttcactagg ccaaagatta ggaccttcta gtctttgcca taagggtgag
     8581 tttaaattcc agtttaaagc atctctttct gtgcctatat ccagttgttc tctataatcc
     8641 ttagatcctg ctgtgtattc aaaaccttcg ctagtataac ctctaaattg aggagaatgt
     8701 accatagaaa taagctcttt cgaacttcta gaaagattaa aaaattcttt gccaagtttg
     8761 aataatttct cgtttaaatt tttatctata ctggtattga taagataaaa aaaacctatt
     8821 ttagaagcaa tttctcttaa atttttaaga aaagtgcttt tatctttttc ataagcttgt
     8881 aaatcaagta taggtaagtt catttttgct ccttaaatta aaattaagga taagaagata
     8941 ttttgaatta aattttattt agagaaattt ttgtaagtta agattttaaa tgagtatttt
     9001 gaaaaaataa acttttttga ctttcttaca cattatatct ccttatccac tttttggacc
     9061 tttggaaaca taatgttaag ccaaaggacg cactagatac tacacatctc gcacatcagt
     9121 ttcatttttt ctccttttaa aataataaaa tttcaaaatc atatataaaa atatattaat
     9181 taaagcttaa tcgtctaaaa aataaagatt ctttttaagc attctcgagt tttaattctt
     9241 tgttattcat tatgctaata cctagattta aaaccttttg ggcaatttgt ttggcttcat
     9301 ctaaagaatg cattgcgcaa gttccgcatt gatagatatt aagttcagga attttgcttt
     9361 gatcgcttac gcttaaaaca tctttcatag cttcttccca agcttttgca acactttttt
     9421 catctggtgt tccaattaaa ctcatataaa aacccgtgcg acaacccata ggtgaaatat
     9481 caataatttc aactgaattt gaattaagat gatctctcat aaatcctgca aataaatgtt
     9541 ctaaggtatg tgtacctttt tcgctcataa tgtctttatt tggtatacaa aaacgcaaat
     9601 caaacacgct aatatcatca cccttaggtg ttttcataac tttagctaaa cgcacagcag
     9661 gagctggcat tttagtatgg tcaactttaa agctgtctaa taatggcatt ttaactcctt
     9721 aaatataaat tgtctaagaa ttatagcatt taaagttaat atttaaagcc tttctaaaag
     9781 aaaaaaagat aaaataaaac atttaaaaat tcaaggaaat tttatgtttg aagtagttat
     9841 aggtcttgaa gttcatactc agttaaatac aaaaacaaaa atcttttgct catgtgcaac
     9901 ttcttttgga gaagctccaa ataccaatgt ttgtcccact tgtttggcct taccaggagc
     9961 tttgcctgtt ttaaatgaag aggctgtaaa aaaagctata gcttttggaa aagctgtcaa
    10021 tgcaacaatt aataaaaaaa gtgtttttaa tcgtaagaat tatttttatc cagatttacc
    10081 taaagcctat caaatttcac aatttgatat ccctatagta gaaaaaggtg agctttttat
    10141 caatgtaaag ggtgaaaata aacgcatagg tattacaaga gcacacttag aagaagatgc
    10201 aggtaaaaat atccatgaaa ataatttttc taaagtggat ttaaatcgtg caggaactcc
    10261 tttgcttgag attgtcagtg agcctgagct tagaagtagc gatgaggcgg tggcttatct
    10321 taaaaaactt cattctatta tacgcttttt agatatttca gatgcaaata tgcaagaagg
    10381 aagttttaga tgcgatgcaa atgttagtat aaggcctaag ggcgatacaa aactttatac
    10441 tagagtagag attaaaaatc ttaattcttt tcgttttatc caaaaagcca tagaatatga
    10501 ggtaaaaaga caaagtgagg cttgggaaga tggaacttac gaacaagaag tagttcaaga
    10561 aaccagactt tttgatacaa caaatttagt tacaagaagt atgcgtggca aagaagaagc
    10621 ggctgaatat cgttattttc cagaccctga cttgcttcct gttttgttaa aagatgagtt
    10681 tttggatatt aaaattcctg aacttcctga tgagaagaaa gcacgcttta tagacgagct
    10741 tggtataaaa gaaagtgatg ccgaggtttt aatcagttct ttagaaatga gtcgtttttt
    10801 tgaaagtctt atttctcaaa atttaaattc taagctttgc gtaaattggt taaatactga
    10861 acttatggga cttttaaaag gagaattgac tatagaaaat tctcccgtag atgctcaaaa
    10921 gcttggagtt ttaattaaac gcatagaaga tggcaccatc agtgcaaaag cggctaaaga
    10981 tgtcttagct tttgtatttg aaaatactag cgtggaaatt gatgaagcta tagaaaagct
    11041 aggacttaag caagtaagtg atgattcagc catagaagcg gtgattgaac aaattttaaa
    11101 tgcaaatgcc gataaggttg cagagtataa aagtggtaaa gacaagcttt ttggattttt
    11161 tgtgggtcaa acaatgaaag aaggcaaagg agcttttaat cctgcaaaag taaatgaaat
    11221 tttaaaaaca aagcttggtt gatgcgtata gcggttattg gtgcgggaaa atggggcagt
    11281 gctttacatc tagccttaaa agaaaatcac aattgtttta ttagttcttt gcatcagcgt
    11341 gatttagaag attttgttag cataaaagaa gctttagaat gtgaatatct tgtttttgct
    11401 ttaagttctc aagggatgcg tgcttggctt aaagaaaatt tcatcaacaa gggacaaaaa
    11461 attttaattg cttcaaaagg catagaagat caaagttgtc aatttttaga tgaaattttt
    11521 ttagattttg taccaaaaga aaatttttgt gttttaagcg gtccttcttt tgctgctgaa
    11581 gtaatgcaaa aacttcctac tgctttgatg attagcggga taaatcaaga gctttgtaaa
    11641 aaatttgcaa gttttttccc tgattttatt aaaacttata ttgataatga tgttcgtggt
    11701 gctgaaattt gtggtgctta taagaatgtt ttagcaattg caagtgggat tagtgatggg
    11761 ttaaaacttg gcaataatgc aagagcggca ctgatttcaa gagggcttat agaaatgcat
    11821 cgttttggta aattttttgg tgctaaagaa gaaacttttt tagggttaag tggggcaggg
    11881 gatttgtttt taactgcaac gagtgtttta tcaagaaatt atagagtagg tttaaaactg
    11941 gcgcaaaatc aaaaattaga tagtatttta gtcgaactta atgaagtagc agaaggtgta
    12001 aaaactgctt atgctataga aaaactagca aaaatgaaag gaatttatac acctattgta
    12061 aatgaagtag tggcaatttt taagggtaca agcgtgcaag aagcaacgca gagtttatta
    12121 aagcaaaatg attaaggaaa aatcatgata attaaaaatg caaaaattta tggagattct
    12181 ttacaagata tagagattaa agaaggaaaa attaccaata ttggttctaa tttacaaggc
    12241 gaagaaattt tagatgctaa aggtatgact ttacttccat cttttgtgga tttgtgtgtg
    12301 agtttaaaaa acgataaatt ttctttagct aatttagagc ttttagaaaa tgagtgtcta
    12361 aaaggaggaa tttctagtat agttttgcgt gattgcatgg attttgatga agaaagtttt
    12421 gctttatttt tacaaaattt agctcaaaga aagatgcaaa ttttttcaag tgtgcgggtt
    12481 aaggatgcaa acggcaagct taaaaattta gccactcttt taaataaagg tgcttgtgct
    12541 ctagaacttg acagctcttt agatgcaaat actttaaaag taagttcaca atatgctttt
    12601 atgaaagact ctccaatttt tgtgcgttgt tatgataagg attttgatga taatggagtg
    12661 atgaatgatt gtgaaatgag ttttgagcta gggcttatag gcatgagtaa aatcgctgaa
    12721 actagccaga tagctaaaat gaaagaattg gctaaatttt ataaaaataa agttattttt
    12781 gatcttttaa gtttgaaaga ttctttagta ttattagatg aaaaggattt aaaacttgta
    12841 agcattcatc atcttatcaa agatgatagt gcttgtgaag attttaatac ggctgcgaaa
    12901 cttatgccac ctttaagaag caaagaagat gttttggctt taagagaggc tttaaaagaa
    12961 ggaaagatta gctttttaac ttccctgcat agtgcaaaat caatttcttt aaaagattta
    13021 gcttttgatg aagcggcttt tggaattcat agcgtatgcg aatttataag tctttgttat
    13081 acttttttaa tcaaagaagg atttttaaat tggcaagagc tttgtcgatt tacaagtaaa
    13141 aatcctagtg aatttttagg tttaaatagt ggagttatag aagttggcaa agaagctaat
    13201 ctagttcttt ttgatgagaa tgaagaaatt tttgctccaa aaagttctct ttattctgag
    13261 gataaacttt ttggaaagat taaaatgcat ataattaaag gaaaaaatat tttagaaact
    13321 taaattccca aagatagttt aaatcctaaa aatacaagtg ctgccataat accagcggct
    13381 ggtaaagtga taatccaagc caatcctata ggcttcatca taatccaatt tgcgttttta
    13441 ttatacactc ctatacccaa tatagcacct atgagtatat gggtggagct aacaggaatt
    13501 ccaaattgtg tagctaagag tataactatg cttgcaccaa gttctgcaga aaatccagta
    13561 gtagagcgta tggttgcaag ttttgaaccc actgtagtaa tcacttcttt acctaaaaac
    13621 caaagcccta caactagagc aactccaaac atagctaaag cagcaaaagg tacaggagaa
    13681 gtcgcgttaa ttgtgccgtt ttttaagaca tctaaaatcg ctgcaaaagg acctatagca
    13741 ttggctatat cattggctcc gtgtgaaaat gcaaaactag aggctgtaaa tatttgaaac
    13801 catgagaaaa ttctatcagt agttttatta agttctgttt ttttaacgat tttgactata
    13861 gcaaatgtta caacataact tatagttcct ataattccga taatccaaaa gttttgtaaa
    13921 atatctaaag tgctaacatt atttaaacct ttaaataaaa acattgccga aatgatagca
    13981 gcagcaatac aagcaatgat tggcatatga gtttttaaaa tagagtaaat atctatatct
    14041 ttttcttgat ccttaaattc cttcatttta tttctataga aattattttc ttgttcttcc
    14101 tcatctaaag ctatagcgga aagttctttg atttgttctt cttgggattt tgtttttaaa
    14161 tttaaaaagt attcttcttt gaattttttt ctttcttttt tgatattttt caaatcatca
    14221 tttagttttt ctgatggttt taaaattttc ttatcaatat atgaataaat aatataagct
    14281 acaatacccc ctaaaagagg agaagctatc caagaaatag ctattcttaa aatttcactc
    14341 catttaacca tagagagtgt ttggatccca tcaaatttta aaagccccat cataatgcta
    14401 gcacctacaa ttccaccaac tatactgtgt gtggttgata caggtaagcc tttcttggtt
    14461 gcaataaaaa tccaaacccc agagcttaaa agtgcagcaa gcataatgat aacaaaaagc
    14521 ataggatcta aagaatttgg aaaaataaca ataccgctgc gtatggtttt agtaacttct
    14581 gcgcctgcga agattgcccc gcttagctca aaaacagctg ctataattaa agcttgttta
    14641 atggttactg tttttgcgcc aacgcttgtt ccaaaagaat tggctacatc atttccacct
    14701 atattaaatg ccataaaaat gccaaatata gaagcaagaa taaaaagaat caattgatgt
    14761 tgcgaaatat aaccaaatcc ccaaataaca aatgcgatag tactgataat aaaaataaca
    14821 aaagctatga ggttgtcttt ttgcattaat aacccttttt tattttaatt atacacttat
    14881 ttactttaaa tttgctaatt ttatttttta gtctttgtgg aatttttatt tatattattt
    14941 ttttataata aatactcaaa caagaaataa taaggaatat aagaataatg aggggtattt
    15001 tttatataat agcattgttt tctttactca atgccgatga acttacagag gctttagcaa
    15061 aaaataataa tcaaaattct tgggagcact ttgattatga aaataccaaa gaagctccaa
    15121 aaattcaaga agagaatgtg gattttaaaa gcacttttga tagcttactt tcaaaaactt
    15181 tagaaaataa taatggtata gataaaacag atgggaattt ggattttcaa aacgaaaacg
    15241 cgcaggttaa aaatttaagt tctctttatg agggggagaa taattctttg ctttttcaaa
    15301 aagaactttt tgtggctcaa gataattata attactcatg gggtttaatc aatcgttatg
    15361 aaaaagatga ttttttattt ggagttaatg gttttattga taaacaaaaa gaacaaaaag
    15421 atactaaaag ctttggtaca gagtttggtt atagtaaatt tataaaggct tatagtaatt
    15481 attatatacc caatgaagca gaaaaaaatt tacagcttgg aatgagtttt gtaattccaa
    15541 cttataccgc ttttgctttt gatataagta aggataatga taaaactaat tatcaagtat
    15601 cttactctcc ttatagtgta tttagtttaa atttattgcg tcgtgattat agtgcaagag
    15661 agactgttga tgatactgtt gttcaagttg gatttagttt taatttcaat gaaagttttt
    15721 taaagcaatt tagaaaaaaa gataatactt tagaggaggt taatcgatat gatttcctcc
    15781 aaagaaccca ttagttcatt ccagcattat ggaatttttc tggattatcc atagcatagc
    15841 ggaatttttc ccaatcaatt tgtttatccc agatggcaac aattaaggct gctactgaat
    15901 ttccacaaag atttccaacc gctctcattt cagacataaa tttgtcaaca cctaaaagaa
    15961 tacctatagc agttactggt agaacttgtg ctaaggttgc atttgcttct gaaatttcca
    16021 tatttcctag agccgcaagc gtacttccaa gcactataaa acctgatcca gttacaccta
    16081 ctgcaccttt tgaggctatc attaatacta ttaaaatact gatttcgtgt gctaaactta
    16141 aatttacatt gaaagcttgt gctagaaaga ttaagctcat agctagataa atatttgtac
    16201 aatcaagatt aaaactatat cccgttggta aaacaagtcc gactgttgct ttagaaagtc
    16261 ctgctttttc tagttttctc attaaaggag caagtgcaga ctcgcttgaa ctggttgcaa
    16321 aaacgatcaa tacttctctt gagataaatc tcataaattt gaagatattt acttttgcaa
    16381 aataacaaat cagacctaag attccaaata taaaaacaag acatgaaatc agcattacta
    16441 aaagtaaata tgctaagttg atcaaagagc caattccgta ttgagctatg agtacagcca
    16501 ttgctgaaaa ggcggcaata ggactaaaat acataatgat ttgtagaatt ttaaaaacaa
    16561 aattttgtgc cacttcaaaa actctttgaa ttgcctgttt atcttctatt ctcattaaag
    16621 aaataatcaa agcagtaatt atagcaataa ctaaaacttg tatggttttt ccttctgtaa
    16681 aaggcgtgat aatatcagta ggcatagcat cttttaaaat atgcataatc tcagagctcg
    16741 cacttacttc tgtggtttga gaaatgtatt tttgaacgct ttttgtatca agttgacttg
    16801 gatcaagatt cattccatgg cctggttgca taacatttgc cataaaaata cctatagcaa
    16861 gtgctaaagt acttacaact tcaaagtaaa taaccgcttt agcaccaatg ctacctactt
    16921 tttttaaact ttcaagacta atgatgccta aaaccaaagt aacaaaaata ataggaccta
    16981 taagaacctt taaagcacct ataaaataat caactcctgg tttgctagca atggctaatt
    17041 ctttatctat atagccaagt acaatacctg caataatgcc tataatcacc caaaatccaa
    17101 gacttttgat aatacgttta tataaaggcg gttttctttc agctaaagtt tgacttaaag
    17161 tttccaagtt tattcactcc ttttgatctt tgtaaaatat aattttaaca atgcgtattg
    17221 taaattttaa caaaaaaaca aatctagaaa tactttcttt tatatgatat gataattttt
    17281 tatataaatg ttacaaaatt tctcattatt tgcattataa aatttaaaat atttttgaaa
    17341 attttataat tttgcaattc agtttgcttt ttgttattta ttattggtaa taattctatt
    17401 tttgatttat ttgttttatt gggatgtttt aaattatgaa agaaatagtt ttgtctgaaa
    17461 atgctttaat tacttctaaa acagatctta aggggaatat catttatgcc aataatgact
    17521 ttttaaaata cgcaggttat aaagttgatg aacttttgta taaatctcat aatatagtaa
    17581 gacatgaaga tatgccacgc actgtattta aatgtctttg ggattatatt caaaaaggag
    17641 atgaaatttt tgcatttgtg aaaaataaag ccaaagatgg taatttttac tgggtttttg
    17701 caaatgtaag tgcttcattt gatactaatg gaaatatcat caattattat tctgttcgtc
    17761 gtgcacccaa tagaaaatct ctttctataa ttgaagaagt ttataaaatt ttacttgaaa
    17821 aagagaaaaa atcaggtatt aatgctggag tttcagcttt aatggatatt gtaagttctt
    17881 ataaaatgac ttataatgaa cttattttta acttacaaga aaataattaa ataagatata
    17941 tttaat
//
LOCUS       DAZAND010000022        17744 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.022, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000022 DAZAND010000000
VERSION     DAZAND010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17744
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.022"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..167)
                     /locus_tag="ACHDOB_000600"
     CDS             complement(<1..167)
                     /locus_tag="ACHDOB_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325539.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQ"
     gene            complement(154..756)
                     /locus_tag="ACHDOB_000601"
     CDS             complement(154..756)
                     /locus_tag="ACHDOB_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325540.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            complement(753..854)
                     /locus_tag="ACHDOB_000602"
     CDS             complement(753..854)
                     /locus_tag="ACHDOB_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325541.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            complement(851..1072)
                     /locus_tag="ACHDOB_000603"
     CDS             complement(851..1072)
                     /locus_tag="ACHDOB_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HFN3325542.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILVVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            complement(1069..1932)
                     /gene="ccoP"
                     /locus_tag="ACHDOB_000604"
     CDS             complement(1069..1932)
                     /gene="ccoP"
                     /locus_tag="ACHDOB_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase N-terminal
                     domain-containing protein"
                     /protein_id="HFN3325543.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            complement(1932..2195)
                     /gene="ccoQ"
                     /locus_tag="ACHDOB_000605"
     CDS             complement(1932..2195)
                     /gene="ccoQ"
                     /locus_tag="ACHDOB_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HFN3325544.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYWYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            complement(2200..2865)
                     /gene="ccoO"
                     /locus_tag="ACHDOB_000606"
     CDS             complement(2200..2865)
                     /gene="ccoO"
                     /locus_tag="ACHDOB_000606"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HFN3325545.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDTENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            complement(2878..4344)
                     /gene="ccoN"
                     /locus_tag="ACHDOB_000607"
     CDS             complement(2878..4344)
                     /gene="ccoN"
                     /locus_tag="ACHDOB_000607"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045278 - plasma membrane respiratory
                     chain complex IV [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HFN3325546.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            complement(4470..5150)
                     /gene="bumR"
                     /locus_tag="ACHDOB_000608"
     CDS             complement(4470..5150)
                     /gene="bumR"
                     /locus_tag="ACHDOB_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate response regulator transcription factor
                     BumR"
                     /protein_id="HFN3325547.1"
                     /translation="MSQECKELIILVVEDEIKTRESLINVLSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDCLVGEKIEANMLVKISEEYQFNKTKRTLIHNGKEIVLTKK
                     ELAFISLLLKQPGVLVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            complement(5153..6364)
                     /gene="bumS"
                     /locus_tag="ACHDOB_000609"
     CDS             complement(5153..6364)
                     /gene="bumS"
                     /locus_tag="ACHDOB_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate sensor histidiine kinase-like
                     phosphatase BumS"
                     /protein_id="HFN3325548.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKYSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIVYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITITFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EVFLKLKERVE"
     gene            complement(6361..7020)
                     /locus_tag="ACHDOB_000610"
     CDS             complement(6361..7020)
                     /locus_tag="ACHDOB_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFN3325549.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYHLFRIFAYIALGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFIKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     KGILVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGMNLAYIGFKAF
                     Q"
     gene            complement(7017..8135)
                     /gene="carA"
                     /locus_tag="ACHDOB_000611"
     CDS             complement(7017..8135)
                     /gene="carA"
                     /locus_tag="ACHDOB_000611"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HFN3325550.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEVKKLAEAKIPMLGICLGHQLLSN
                     AFGYATYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(8135..8686)
                     /locus_tag="ACHDOB_000612"
     CDS             complement(8135..8686)
                     /locus_tag="ACHDOB_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HFN3325551.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            complement(8779..9297)
                     /locus_tag="ACHDOB_000613"
     CDS             complement(8779..9297)
                     /locus_tag="ACHDOB_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HFN3325552.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            complement(9290..9718)
                     /locus_tag="ACHDOB_000614"
     CDS             complement(9290..9718)
                     /locus_tag="ACHDOB_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export protein FliJ"
                     /protein_id="HFN3325553.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEYEKAYELSRQEC
                     ENLGVLPKSGSIAELRSNLSMAQVGREALARAREKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            complement(9715..10965)
                     /gene="purA"
                     /locus_tag="ACHDOB_000615"
     CDS             complement(9715..10965)
                     /gene="purA"
                     /locus_tag="ACHDOB_000615"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HFN3325554.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALMK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            complement(10993..11090)
                     /locus_tag="ACHDOB_000616"
     tRNA            complement(10993..11090)
                     /locus_tag="ACHDOB_000616"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11054..11056),aa:Sec,seq:tca)
     gene            11231..12439
                     /gene="yedE"
                     /locus_tag="ACHDOB_000617"
     CDS             11231..12439
                     /gene="yedE"
                     /locus_tag="ACHDOB_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HFN3325555.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWAYRAFEGQSHFMIV
                     GIANIIGTMILALSYDFLPKAFKEGIKINLLTEFGNLNGFFINLILFILIFAFVVFYK
                     KYFFKNQLKG"
     gene            12443..12670
                     /gene="yedF"
                     /locus_tag="ACHDOB_000618"
     CDS             12443..12670
                     /gene="yedF"
                     /locus_tag="ACHDOB_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HFN3325556.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLQSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(12686..14155)
                     /gene="putP"
                     /locus_tag="ACHDOB_000619"
     CDS             complement(12686..14155)
                     /gene="putP"
                     /locus_tag="ACHDOB_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005298 - proline:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0031402 - sodium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0015824 - proline transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HFN3325557.1"
                     /translation="MEVVQINTPIAVMFVAYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGVISIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHVVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLAASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(14173..17661)
                     /gene="putA"
                     /locus_tag="ACHDOB_000620"
     CDS             complement(14173..17661)
                     /gene="putA"
                     /locus_tag="ACHDOB_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HFN3325558.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANASVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFDYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYEYLKKLFSFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQKGWELPTFYKKIDTDSNYNKMLDFILEGDNHKYIN
                     IGIASHNIFEIAYAYTRISEAGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDENWKAQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYESKKFSNESDTDFILAQNRAWAKEIKAKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVK
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDAGI
                     PKDALIFLPSKGSDISKYLLVDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYNDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLENNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGVKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFMNDLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVILGANIANIDLSISYDEQDISMIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
BASE COUNT         6006 a         3345 c         2151 g         6242 t
ORIGIN      
        1 atttgattgt aattattttc aacattttga taagagtcaa aataaaaatc atcctcatac
       61 acaggatggt gacttgctat aaaaatcgtt acaatacaag caataattat agccaaaagt
      121 gaaagcaaaa taccataagg ccaaaaactt tttttagttt ctaacatttt ttttcctctt
      181 tattcttctt tgtgcatagt ataacaatgc aaagcaaata aatccataga taagtattct
      241 taagatattg atagtatcac gatttgcatt gcctatagaa tgttctaatt gtaatcccaa
      301 ggattttgcc acacgatcta caatatctgc ataaccatta agtatagcag cattataaat
      361 atcaccttta tttgtagcta atatcggcaa aatagatcct gttccaggat aaggactaag
      421 tacagcttct ttatcaatca aagctaaagc accttttgag cccactatat caactttgtg
      481 agaatttttt gacaaaagaa gcaatatata agattgagga agttcttttt gtttatttag
      541 taaagtttca atttcagttt tatcaccaac cataacaccg ataaaaatat tacttttttg
      601 gtaaagctct tttcctataa gattaatctc attacttact ttttgactta aaatattttc
      661 attaaaaagt acagcatcaa gagcaaaaac cctagaaggc aataaaacaa agaagaagat
      721 ggctaaaaaa aaaccatctt gtaatatttt tttcatccta tatgaagatg atttacggtc
      781 aaaaccgacc aagcggtgat tgcagcagca acaactaaac caataacaat taaatattcc
      841 aaagccttac tcattgtgct tcctttatac ttctatgatc ttgttctttt gaaccaaaca
      901 tctttacact ttgtacatct ttaagactat atggcttttg catcacttct tgctgagctt
      961 taagacccca aatagttaaa actactaaga tagcaagtaa caaaaccgta gcaattaaca
     1021 tacctgtaac acctgaaaga gaaaacacgc atctattatt attttccatc attcacccct
     1081 tgaaagagaa attacatact cgccaacagc ttctttttga atatcattaa gtgttggaaa
     1141 actcggcatt gttcctataa aaccagcctt accactatgt aaaacatcta ctacaaaagc
     1201 tgcagaaccg tattttgtaa gatctgggaa cattccatct tgaccttttc catcttctcc
     1261 atggcatgct gcacaagttg cataagcttc tttacctttt gctactaaat tttcatttgc
     1321 agttttctta atagctgaaa gatcttttgc tacataagca gcaatagcag ggatatcttc
     1381 ttctgccacg cctaaatcag cagcaccaag catttctcca cctggaaaat tcataccttt
     1441 tgaaccatgt ttaattacat tgattatacc ttcttcgcta ccccaaatat ttaaattttg
     1501 agctttacca ttgataccat cgcctgtaat tccatgacaa gctgaacact gaactaaaaa
     1561 gatattttga cccattgcta ttttatcttc aggagataaa tttttaaatt tttcttcgaa
     1621 ttttgtatta tgagttgcta cttcttcatt gtattgacct atacttgaaa aagaatttaa
     1681 aggatatccc catagaaaat accaaatagc ccaaacaata gtcaggaaaa ataccacagc
     1741 ccaaccagta ggaacagcat ttttatactc tcctattcca tcccaactat gttcactaag
     1801 ctctgactcg cctttttttt ctttcatttg cttaaacatt ctacccacaa taactagtgt
     1861 gattaaaatg ataagaatag ctccaattaa agataagaga ttaacattat cttctaaatt
     1921 taaccattgc attaagcact ccttttactt tctaatacac tatcatcaat atcatctttt
     1981 aaggcaaggt ttgcataatt ttcataattt ctctcgcctt ttttttctgt tctatataaa
     2041 tgataccaat acgcatataa tactattgac aaaaacatca cgagtgcaaa aaaaccataa
     2101 ccttggaaaa tctcccactc atgtttttga actgttgcta aatcaaatgt gattaaattt
     2161 ttaatcacat caaaaactat tgataaatgt tccatcatct tactttaagc tatttaaata
     2221 agcgatcaaa gcaactattt ctttgatttc acctttagca aaagcatctt ttacttcttg
     2281 atttttcatt tgatcaacta tagcctgagc ttcagctttt acttcagctt gcgcatcctc
     2341 ccaagaacca agttttgttc cattttctgt atcataagga acattgaaaa cttttttcac
     2401 agttaaagcc tcagcataag cagtttcaat atctgcatta tttttaaaca tatgcttata
     2461 tgaaggcata atagaatctg gaacaacaga agtaggatcc cacatatgat tttcatgcca
     2521 atcagccgtt ctataatttc ctacacgagc aagatcaggt cctgttcttt ttgaacccca
     2581 aagaaaaggt ctatcataag caaattcacc acttacagaa tacataccat aacgatctgt
     2641 ttctgattta aatggacgaa taagctgtga atgacaagca ttacaactat ctttaatata
     2701 tactgcacgc cctgcaagtt gtaaaactgt ataaggtttt ttaccttcaa ttggtcttgc
     2761 attttctgca aaatttggca aaacttcaac tatgcctgca taagcaatca ctacaaaaac
     2821 agctacagca aaaaagaatg gatttttttc taaccaacta aacatatttt ctccttttta
     2881 tgctgccata ggcgaagcgc tttttggttc tttatcaagc actcttccac aagcaattgt
     2941 tttgtaaata ttataagtaa acataaagaa accgataaga tacaacaatc caccaatcgc
     3001 tctaatccaa taataaggaa caatagccac aacagtatca ataaagctat aaagcaagtt
     3061 accatactca tctgtcgctc tccacatcat accttgagta atacccgcaa tccacattga
     3121 agcaaaataa agaactatac ctgtggtttg aatccaaaat tgagcttcca ttaaagattt
     3181 gctataaagc tctcttttga aaactctagg ggtcatatga taaagcgcag ccatagtcat
     3241 aaatcctacc caacctaatg ttccatcatg aacatgtcct ggaatccaat ctgtaaagtg
     3301 tgctaaagca ttaacagatt taattgaaag aattggccct tcaagtgttg agaacatata
     3361 gaaagttgat gccaaaatca taaatttaat caatggactc tcgcgaagct gactccactc
     3421 acctttcata gtaagcaata tattaatcgc tgaaccccaa gaaggtaaaa tcaatactac
     3481 agagaaaacc gaacccatag tttgcatcca atcaggtaca gttgaataaa tcaaatggtg
     3541 accacctgcc caaagataaa caaacattaa gccccaaaat gcaaataaag agagtttata
     3601 agagaaaatc ggctgaccac tttcttttgg caagaagtaa taaatttgag caataatacc
     3661 cacagtaaat acaaatgcca cagcattatg tccataccac cattgtacta aagcatcatt
     3721 tgttcctgca tacattgata cactatgcca ccatttaccc attccagtaa caaaataagt
     3781 tggtacttcc atgttgttaa aaagataaag catagctata cctaaaaatg tagctatata
     3841 ataccataga gaaatataaa gagttttttc acggcgaatt ccaataagtc caaaaatact
     3901 tacaccccat aaaacccaaa caagaacaac aagaatgtct aaaggccact caagctctgc
     3961 atattcttta gatgtagtca cacccataaa caaagatata acagctaaaa ccatagtaag
     4021 catataaagc caaaaatgaa gcttaccaac agccattaaa aatcttgact cagccatact
     4081 cactttaaga acacgctgac ctatataata ccaagttgcc caaatccctg aaagcataaa
     4141 accaaaaatc acacctgaag tatgaagtgg tctaagtctt gaaaaagtgg catattctcc
     4201 tgctaaataa tttaaattag gatatgccat ttgaaaagct ataagagttc ctatagccat
     4261 accaacaatg ccgaacaata tggtcgcaaa cataaaatat cttgcaaccg tatagtcgta
     4321 atttaataca ttacctggat gcatcgactt tctccttaaa atttttgata acaagagaat
     4381 attatagaat attaattata cattttttct taaaaatgat aattttgtta atcatttgtt
     4441 atgctttata ttttaaggct aaatcagtct tatttattga tatttatctt ataacctaaa
     4501 cttggcacat tttttataaa atcttcaccc actttatctc ttactctttt tataaatgtt
     4561 cgaacagcag tatcgctcac atgctcacct atccaaacat ttttcttaat atcttcatgc
     4621 aaaaccaaaa ccccaggttg ttttaaaagc aaagaaataa aagccaattc ttttttagtt
     4681 aaaacaatct ctttaccatt atgaatcaaa gttcgtttag ttttgttaaa ttgatattct
     4741 tcggaaattt ttacaagcat gtttgcttca attttttcac ctactaaaca atctaagact
     4801 ttgaataatt cttctatatc aacaggttta attaaatatt tatctatacc gatatcaatg
     4861 gaacgcaaaa gtctctcttt ctctgaatac gcactaagaa caacaattgg gacatcatct
     4921 gaaatttctt taatctctct tgccatatcc aatccatcca taataggcat agcaatatct
     4981 gtgataacta aatccggttt aaatttttta aattttttaa gcccttcatc tccattttga
     5041 gctccgatta ctttactaaa gcgttcgctt aatacattaa tcaatgattc tctagtctta
     5101 atttcatctt caactactaa tattatcaat tctttacatt cttgtgacat ttttactcta
     5161 ccctctcttt tagctttaaa aatacttcaa aacaagcccc atcttttcca ttcttaactt
     5221 ttatttttcc ttggaaactt tcgataattt gtctacttat ataaagtcct actcctatac
     5281 cctgactagg atgttttgtt gtaaaataag gttgaaaaat tttatctaag ttttctttat
     5341 caatcccacc agcattatct tttattgtaa ttttcagata attttttcca aattttgaaa
     5401 aagttattgt tatgattttt ctttttttgt ttttaaatgc ttctattgaa tttaaaatca
     5461 agttaagaaa aactcttatt aaaccattct catatgccaa aacttcataa tcacttttcg
     5521 aaacaatatt gatatttaca tgattttttt ctatagtttc aaaagcaatt tctaaggctt
     5581 tatttaaagt ctcttttata aatacacact gttctacccc cttattaaac aaagttctaa
     5641 acacatcaat tgtttctgac atatttttaa tcatatcttt tgattgtgaa taaatctcag
     5701 caaatccttt ttcatcttta agattttgtt tcatttgaaa catagcaata ccaagctcat
     5761 ttaacggttg cctccattga tgagctatat cactaatcat ttgctctaat gaagatttca
     5821 aaatctcttc atagactatt ttaatatctt tttcattttt ttccaaggca atttgcattt
     5881 ttttctcaaa ttttttacct aactgtataa attcctgttg gtgattttta actgtatttt
     5941 caagattaat acttaattct cttaatttag cgtgatttag agcaagctct tcattaagct
     6001 taaaagaatt actaacatca tgagagaatg ctactatttc tattaattca ttatttttat
     6061 ccaatatggg gattaataaa gtttcaagat agaaagtttt gcctaattta tcaatatttt
     6121 taaaaataac ttgataaggt tttttatatg aaagtttttt taaaagttct tcaatataac
     6181 attcctcaac atctggatgt ttaaatattg aatatttttt tcctataagc tcttttttac
     6241 tatatccact tatttgacaa agcttatcac tgacaaaaat taaatttcct tgaacatcag
     6301 ctcttgaaaa aattgtattt ttttcaagag ctttaaaaaa ctgatcttta aaaaaatctt
     6361 tcattgaaaa gccttaaaac ctatataggc aagattcata ccgtaacaaa caataacgcc
     6421 atacgataaa taattaaaca aatttttcaa aaaatcacta aaaaactgtg aaattttaga
     6481 aaaaaataac atcgcaggta aagttgatat cccaaaaatc atcattacca aaataccttt
     6541 aaaaatattt tgcttactca ttgcattggc tataaaaaaa tacaccaatc cacaaggaac
     6601 aaaaccattt gaaaatccta aaaatatggc tgattttaat cctttaaaat ttttagattt
     6661 tttaataatt ttctttataa aactatcaaa aaaaacatta ttttcaataa aagataacat
     6721 attgcctcta aaaataagag caaaacccaa aatcatcata aatataccaa gaataaaaaa
     6781 tgacaaactt tgaaccttag cattgattgc taagatattc ccaaaagttc caaaaattat
     6841 ccctaaagca atataagcaa aaattctaaa caaatgataa ataaaagtta ataaaaataa
     6901 attattgctt tttgaattca aatttataaa aagtaaatta aaaccaccac acatagaata
     6961 gcagtgtcca aaactagata aaaaagcaac gctgataata gctaaaaaat ctatactcac
     7021 atcaaattca taaattcttt aaaaatatac ttgctttcat gagggcctga agaactttct
     7081 gggtgatgtt gcactgaaat aataggatag tctttatatc ttactccttc aacattatcg
     7141 ccaaataaat ttctatgagt gatatgagcc acttgagcta attcttctgg aacattataa
     7201 ttatgatttt gtgcggtaat ttctaccgtt tttgtatcaa gattgatcac aggatgattt
     7261 gctccatgtt gtccaaattt cattttataa gttgcatatc caaaagcatt acttaaaagc
     7321 tggtgaccta agcaaattcc aagcatggga attttagctt ctgcaagttt tttaacctct
     7381 gcaatctctt gttttaaaat ccttggctca cctggaccat tagaaagaaa tacgccttgg
     7441 atttcacctt ttttatacag agtaatcaac tcatctgctt taacattata tggataaact
     7501 tctacttcaa aacctacttc tacaagttca tttaggatat ttgttttaac accataatct
     7561 ataacagcaa cttttttctc acttctttta gcatcattaa atttttgaaa actagcgttc
     7621 caaacacctt gtttatgaga ataatttttc ttagtgctaa cttcttttac aaaatttact
     7681 tcatcaattt ttgctgattt ttctaaggcg atttttaaat cttctttatt tgaaatttca
     7741 gttgaaatta cagctcttaa attgccatta tttcttatca tttttactag atatctcgta
     7801 tcaagttcat aaattcctat ttttccatgt ttttcaagat aatcttgcag actttcttta
     7861 gcgcgaaaat ttgaaaaact agaacttaat tcacgcatta aaacaccact tgcaaaaatt
     7921 tccttacttt cattatcatt ttcattggtt cccactatac caatttctgg catggaaaat
     7981 acgataaatt gccctgcata agaaggatct gaaataattt cttgataccc tgttaaagaa
     8041 gtgttaaaca caagctctcc aaaaaaagta ccgctctttc caaaagcctt agcacttaaa
     8101 aaaatatcat tttctaaata aatataagcc ttcattaaaa catacctttt tttctaagct
     8161 cttcttgata gagtttttca aagataagat cgtattcttc gctacctgga ataggttttg
     8221 ttttataatt gctaattttc tcataaacct catcttcaag tttttcataa attttaagat
     8281 aagactctat gcttgaaaag attaaatttt taactctatt ttcactcact ataaaattaa
     8341 tataatcatt ctctacaagt tcttccaaaa tttgatgcgc tagatgatta tgtctatctt
     8401 cagaatctaa aatcacatta aattcaggag ctaacttttt cttcacaagc caaaacatat
     8461 ttttacgatc tacttgcata agctccattt catcttcttg ttgctctaaa agctctttta
     8521 ctctttcatc taattttctt tcatttagaa tatctttctc taaaacttct attatacata
     8581 ccttaagctt ttctaattga tctttaattt ctacaaaaga agaattagct atatctaaca
     8641 tcattttatt tgcgatataa ggaatatgtg gtaattttat acgcatcttg aaaacctttt
     8701 atttaataat gtttgaaata atagcttatt tttggtaaaa gaatgttaaa aatgaaaaat
     8761 tttcattctt ttaatcacct aattactagc attattatct aaatttttca aaagtaaagt
     8821 aagctcgcta gctttttttg gatccatttt agataaaaca cctgaaattt tacgcgattc
     8881 caaagaaagc attattttac ttgcatcctc tgcatccatt tgacttaaaa catctgcaat
     8941 ggctgcatct ttcatttggg aataaatttc tttaacccta ccttgagttt tatcattgat
     9001 tgaatttaaa atcttttgtt gttcttctac aagccttgcg ttttcaagct ttaattcttc
     9061 aatttttgcc aaagttgcat taacctcagc ctcttttttt tctaaatttt caagcctttc
     9121 tttttgcaaa gcttcaaaag aggctttata agcttctaaa gattgtcttg cttcatcaaa
     9181 ttctctagtt tgcaattcaa tttgagcttt tctagcttca aaatactgct cacaatcttg
     9241 ttcagctcca aaaactacac ttgaaataaa aactaacaat ataaattttt taatcatctt
     9301 tttctccttt gaaaaaacga ctgattgcaa tttcatctaa aaatttttct tcagccttgg
     9361 caagttcttt ttgcttttgt ttaatttcct cggcttctaa aaccttcatt ttttcataat
     9421 ctaaatgtgc tttttgatat aaaaactgat aatgattcat ttctttttta gaaagttcta
     9481 ctttctccct agctcttgct aaagcctcgc gtcctacttg cgccatactt aaattcgatc
     9541 ttaactctgc tatagatcct gattttggca atacgcctaa attttcacac tcttggcgtg
     9601 aaagttcata agctttttca tattcaagct gtctttgttt ggcttgatta agatttgatt
     9661 ctgctttatc aagttgttgt tttcttactt ttacaacaga attatattta cttttcataa
     9721 gatgatagta tcatctcttt cagggctagt ggaaatatac tttaccttaa cccctgcaag
     9781 ctcttcaagt cttgctatat attttttagc attttctggc aataaatcat aatcttttat
     9841 accaaaaact ttatcccaac catccatttc ttcataaata ggttgaacat tttctaaatc
     9901 gcttggtata tagtcgattt ccataccctt atattcataa gcacgacaaa tttttatctt
     9961 ttcaaaacca tctaaaacat caagcttcat caaagataaa gcatcaagac cattaagcct
    10021 tgctgtatat cttacagcaa ctgcatcaaa ccatccacag cgtcttttac gtcccgtgct
    10081 tacgccaatt tcttttccaa tttgcgcaat tttttctcca tcttcaccct tatcctcagt
    10141 aggaaaagct ccatttccca cacgcgttgc ataagctttt acaataccta taatatttcc
    10201 cgcttcttta ggatttaacc caagtcctgt taaagcacct gctgaaatag tacttgagct
    10261 tgtaacataa ggataagttc catgatcaat atcaagcata gagccctgag ctccttctaa
    10321 aagtactctt ttatcttcat ctaaagcctt ccaaagcatt cttgtagtat ctgtaatata
    10381 aggagttaaa atttcattaa aacgttttaa atcagcaagc aattcttcag cacttggaat
    10441 ttcaatttca agcatttcaa aaaaagtttt attagcttca aaatctttca tcaaagcctc
    10501 acaaagtctt tgtggttcta aaagctctcc aactctatgt cctgtacgat taatcttatc
    10561 tgcataagaa ggtcctatac ccttacctgt tgttcctatg gcatttttgc ctttgagttt
    10621 ttcttttgca atgtctatta aagaatgatg ttttaaattt aaatgagctc tatcactgat
    10681 atataatcta ccttttaaat tttcaaattg agccatttca gcaatcaata cttcaggaga
    10741 aaccacaact ccatttccga taatattaat acatcttgga tgcaaaactc cacttggcat
    10801 aagatgaagc gcatatctta caccatttac ccaaatcgta tgtcctgcat tgtgtccacc
    10861 tgcacttctg caaacaaaat cataattttc acataattta tcaactacct taccttttcc
    10921 ttcatcgccc cattgaatgc cgacaataat atctgctttg ctcataaaaa tttccttgat
    10981 tttacttaat attggcgaga agatgagaga atcgaactcc ccaaagaata gtcaactatc
    11041 ctttcatctg atttgaagtc agtggcgatc accagatacg ctaatcttcc aaagtgataa
    11101 ttatagcgat ttttaatgaa aaacaaaata aatttatcaa tattcttttt gacttcatgt
    11161 taaatttaag ctataatctc actctttttt tagcatcaag ttttgatgat tacattttta
    11221 ggatctttct ttgaattctt ttaaacaaaa atatttaatc aatttttggg acaattcccg
    11281 ttctatgatt gcacttggaa ttttaagtgc agtgtatttt gggatttttg gtggcgtttg
    11341 ggctgttact ggagaaatga cgcgttgggg tggtgaattt ttagaacttt taggtatgaa
    11401 tttagatggg tattcttatt accaaaagca aaatttaaat ggaacccctt taacaagaac
    11461 tgatggtatt atgctcatag gtatgtttat aggttgttta gtagccgcac ttttagctaa
    11521 caaagtcaaa tttcgtctac ctgctagcaa tataagaatt tttcaagcaa tagtaggtgg
    11581 aattctttca ggatatggag caagacttgc atttggatgc aatttagcta atttttttac
    11641 aggtttacct tatttttctt tacacacttg gctttttact gtttttatgg ttttaggaat
    11701 ttatctagga gtgaaaattt gcaacacttc cttttttaaa cctaaagcta aattagaacg
    11761 ggtaaataaa gaaaacttgc cgctaaataa gcaaagtttg cgtacaaaac tatattttaa
    11821 cttaggcata ttgcttttca tagccttttt agtttgggtg ttttatcttg tttttacaaa
    11881 tggcaatatc agcacacaaa acaaacaaag tcttctagct ttagcactga tttttggttt
    11941 tgtttttggc tttgttattt ctagaggaca aatttgtttt acttcttgct ttagagattt
    12001 atttttattt ggtagagata atgctataaa aggcgcatta attggcatga ttatcgcttc
    12061 tttaatcgct tttgctttta tcttgcaagg tcatactagc aaactcatag aactttctcc
    12121 tgctgtagct gtgggagcat ttttgtttgg ttttggcata gtttttgccg gaggttgtga
    12181 gtgtggttgg gcttatcgtg cctttgaagg acaaagtcat tttatgatag taggaattgc
    12241 taatataata ggaactatga ttttagcttt aagttatgac tttttaccaa aggcttttaa
    12301 agaaggtata aaaatcaatc ttttaaccga atttggcaat ttaaatggat tttttatcaa
    12361 ccttatttta ttcatcttaa tatttgcttt tgtagtattt tacaaaaaat acttctttaa
    12421 aaatcaactt aaaggataaa cagtgaaaat tacttatagt ttaaatttac aaggtgaagc
    12481 ttgtccttat cctgctatag caacacttga tgtcttacct aagcttcaaa gcggagaaat
    12541 tttggaagtg ctttgtgatt gcccacaaag tatcaattcc atacctcaag atgcaaaaaa
    12601 ccgtggtttt aaagtgcttg aaatcgatca aagtggaccc acgctaagat ttttaataca
    12661 aaagccttaa aaaaggcttt tgttctcaaa gctcttttaa catcttttca taagctgctt
    12721 tagttccaga tcttacattt gtaaataaac ttgcaataat aatcaccacc gaagctgcta
    12781 aaaaccctgg aactatttca taaagacccg aatttgcaaa attcttccaa agtaccacag
    12841 tagcagctcc tgttatcata cctaagatcg ctcctactct tgtcatccta ctccaaaata
    12901 aagaaaaaag cattacagaa ccaaaagaag ctccaaatcc agcccatgca taagaaacta
    12961 tactcaaaac acttgagttt ttatcagtag aaatcaaaaa cgctattaca gctactagta
    13021 aaacacctaa tttacctaaa tttaatacaa catgacttgg cgcatcttct ctaaaaatct
    13081 ttttataaaa atcttccgct atagtagaac ttgaaaccag caattgtgaa cttgccgtac
    13141 tcataatagc cgctaaaata gcactgagta aaatacctgc tatccaagga ttaaataaaa
    13201 gctgcgacat cacgatgaaa atcttttcag gatcttgcaa acttaattca aatttatgca
    13261 cataagctat acccaaaata cctatcatac aagcacttaa aagacaaacc gccatccaag
    13321 caatacctat aaaagtggcc ataggaatat ctttagtaga acgaatcgac ataaaacgca
    13381 ctaaaatatg tggttgacca aaataaccca aaccccaagc aagtgcagat ataatactta
    13441 taactcccac tccttcgccc atagataaag cttgtggctt tatttctctt actatattca
    13501 tcgcttcacc aaagccacct aaatgataaa gcataaccaa aggcacaatg attaaagcca
    13561 tcatcattaa aagcccttgt atcatatccg tccaacaaac tgccttatat ccacctaaaa
    13621 aagtataagc aacaataata atcgttccag tagttaaagc ataatcatat ctgataccaa
    13681 aagtactttc aaaaagtttt gctccactta caagccctga tgaaacataa aaggtaaaaa
    13741 atatcaaaat taccaccgca catacaatgc gtagtatgtg tttatcatca tcaaaacgag
    13801 tttcaaaata atcaggaata gtcaaagaat ttgcaatcac gctggtataa attctaagtc
    13861 tttttgccac aaaaatccaa tttaaactag ctcctatagt aagtccaatt gcaatataag
    13921 aatctataaa gccacttaca tataaagctc ctggtaatcc cattaaaagc caaccactca
    13981 tatcagaagc ccctgcgcta agtgcagata tcacaggccc catagtacgc ccacctaaaa
    14041 aataatcttc tgaattttta ttttgcttat aaaaataaaa acctatataa agcatcaata
    14101 aggcataagc tacaaacatc actgctattg gggtattaat ttgaactact tccatcaatc
    14161 tctccttgat cattaagata ttgctctaat gcctaaattt ccatagcgat gaaaagatat
    14221 acttaaagct ttttcattaa aataatttaa aagttcaaaa cgaccattta acaatggctt
    14281 ttctcttatg atgattttag caagctttgc agcctcttta taaatctcat catttacatc
    14341 tggctttgcc aaataacgca ctctttcata ttctttaata ctcttgataa aattttcttt
    14401 attttctttt aaaaataata cttttgctcc tatactttga acaattcgtt ctatcatact
    14461 aatatcttgc tcatcataac tgatacttag atcaatattt gcaatatttg cacctaaaat
    14521 cacccctaaa acatctttta agctttcatt tccacaaagt cttaaaacca tattctttat
    14581 tttagtataa gaaaaaagat tatcttctcc acgtatatta acataatctt ttgaaacact
    14641 aaactcattt ttataatgat aagcataaga ttgagacatt ttaattaaat cgttcataaa
    14701 atcttgtgct tcttttaaat ctatttgtgc taattttttt gaaaatttat cttcaattaa
    14761 atgatcatca aaatcttctt gcttaatctc taaaaattga gtgatataat tataaattcc
    14821 cacttttcta cccaaaccta tagctgattt tttaacccct ccaaaaggct gacgaaggac
    14881 tatagcacct gtggttggtt tgttgatata aatatttcct gcttctatat gagtgtgaaa
    14941 atactcccat tctctttcat ctaagctttc aaaacctgca gttaaaccat aacctgtgga
    15001 atttactata tcaatagctt cttttaagtc tttagccttc attacactta aaatcggtac
    15061 aaaaagttca ttcatatgag taaaatcacc ctttttagtg ccatatttta tacctggagt
    15121 catcaaataa ggattattct ctaaaaactt aggttttaat gcccattctt cataaggttg
    15181 taattcatct aaggcctttt gaactttaga acttggctta tcagccaaag tacccaattt
    15241 atttttaaat tcaaaaggat tgcccactgc catagaactt gcagcatcta ctaaagtctt
    15301 tttaaattct tcatcattat aaacctcttc ttctaagact aacaaagaag tagccgaaca
    15361 tttttgacca ctattgctaa aagcagaatg aatgatattt ttaatcgcac tatcacgatc
    15421 agcaaattta gaaactatag tcgcattctt tccgcccgtt tcagcactta aaagcaaggt
    15481 tggattagct tttaacatag cataagcagt atcctcccct cctgtaagaa ttgaaaattt
    15541 aatcgcttca tcaacaagta aatatttaga aatatcactt ccttttgaag gtaagaaaat
    15601 caaagcgtct tttggaatac ctgcatccca aaaacactta caaagcatat aacctgttag
    15661 agttgaaagt gaagaaggtt tgtaaatcac cacattacct gcagctagtg gtgcagctat
    15721 ggtgcccact gaaatcccta taggaaaatt ccaaggagct atggtaaccc ctatgccctt
    15781 aggtgtgaat ttaacttttg gattttgttt tttaagctct tctaaagagt gcggataaaa
    15841 ctctataaaa tcaatagcct cacttacttc aggatcgatc tctaaaaagg ttttgcccac
    15901 ttctaaagct gccaaaccta tcaaatcccc tcttctttct ctcataagtt ttgcactttt
    15961 agctaaaatt tgataaattt catcatgact tttttgtgta aatttggaat ttttagctac
    16021 ttctaaagct tgtttgattt ctttttctcc ggctaaataa gcctttccta tcactctatc
    16081 ttcaatctta tctttaactt ctaaaacatt taaattttct gctttaaaat caagctcacc
    16141 tataacagga taaacatcat aatcttttaa attttcatat ttagctttaa tttctttagc
    16201 ccatgctcta ttttgcgcta aaataaaatc cgtatcactt tcgttgctaa attttttact
    16261 ttcataagaa cttatgatat ttgattcttt atttctatct tgcttacgat gtgtagtatt
    16321 atcaagcgtt tttatgcctt ctaaagattt taaaaaaagt tctttttgag ccttccaatt
    16381 ttcatctcct actttaagat tgaaaaaata acgcataaaa ttatcttcac ttgtattttc
    16441 atcaaggcgt cttacaagat aagcaatggc attgttaaaa tgtgcttcat cgcaaactgg
    16501 agcataaagg attaaatcat gcattttaga taattcataa gaacattgca aactcatacc
    16561 ttcaagcatt tcaaaagtaa aagaatctaa agcacccgct tcacttatgc gtgtataagc
    16621 ataagcaatc tcaaagatat tatgacttgc aattcctatg ttgatgtatt tatgattatc
    16681 tccttcaaga ataaaatcaa gcattttatt ataattgcta tcagtatcta tttttttata
    16741 aaaagtagga agttcccagc ctttttgaga tgcaatggtt tcttcacttt ccatattagc
    16801 acccttaaca aaacggatct taataggctt catacctttt aaaaccctct cttttgaaaa
    16861 agaaaaaagt tttttaagat actcataaga atcaggaata taagcttgca aaacaatgcc
    16921 cgctttaata tcaaatttgg ccacactttc cataaaagct gcaacggtga gttctaaatc
    16981 tctaaattct tccatatcca gattgataaa tttagataca ccttgttttt tctcttcttc
    17041 taaggctaaa gcataaagat aatctagtct ttttactacc tcttctttgg aataatcaaa
    17101 atctataata ttaatttgtg aaaaaatcgt agtaattttt atggaaatat aagtgatata
    17161 acttgatttt aaagcctctt catatttttg catacgatat ttactctcag cttcacctaa
    17221 aacctcttcg ccgattaaat tcacatttaa ggtaatttta tcttgctctt ttcttttttt
    17281 aatatgcggc tctaaaacac tagcgtttgc atctagaacc atagctttag tatcttctct
    17341 taaatgtttg acaaaaaaag gtacacttaa attaggagca aatttgccaa aatttaaaaa
    17401 gctaaaaagt agaaattttt caaaagtgct aaaaaaatcc gctatgccat atttactcaa
    17461 agtatattct ataagctcaa aacttgcatt tttatctttg catctaaaag aacgatctaa
    17521 aagttctata agcataactt tatttttggg attgttaaga agtttttgca ttttagcatg
    17581 aaattctttt tcagaatttg aaatattggc ttctatttgt ccttgcaatt cttcagctaa
    17641 ggctaaagct ttttgtatca tttcgtatct cctaagataa aataaatttt aataaataat
    17701 atataaataa gataaaaata atattttaaa tcatagaaaa tgta
//
LOCUS       DAZAND010000023        17475 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.023, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000023 DAZAND010000000
VERSION     DAZAND010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17475
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.023"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..668)
                     /locus_tag="ACHDOB_000621"
     CDS             complement(<1..668)
                     /locus_tag="ACHDOB_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HFN3325559.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKNSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWLNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQD"
     gene            641..913
                     /gene="yajC"
                     /locus_tag="ACHDOB_000622"
     CDS             641..913
                     /gene="yajC"
                     /locus_tag="ACHDOB_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HFN3325560.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            906..2486
                     /gene="secD"
                     /locus_tag="ACHDOB_000623"
     CDS             906..2486
                     /gene="secD"
                     /locus_tag="ACHDOB_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HFN3325561.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVSDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKSNNTRFWFGYRRR"
     gene            2486..3457
                     /gene="secF"
                     /locus_tag="ACHDOB_000624"
     CDS             2486..3457
                     /gene="secF"
                     /locus_tag="ACHDOB_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HFN3325562.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILEKQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            3467..5896
                     /gene="leuS"
                     /locus_tag="ACHDOB_000625"
     CDS             3467..5896
                     /gene="leuS"
                     /locus_tag="ACHDOB_000625"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HFN3325563.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKAIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYTQKSGKLIHSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEIFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            5893..6405
                     /gene="lptE"
                     /locus_tag="ACHDOB_000626"
     CDS             5893..6405
                     /gene="lptE"
                     /locus_tag="ACHDOB_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HFN3325564.1"
                     /translation="MKKILIFCIGLFLGACGYVPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            6389..7786
                     /locus_tag="ACHDOB_000627"
     CDS             6389..7786
                     /locus_tag="ACHDOB_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325565.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKS
                     YLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDE
                     LIKQIAAVNEQHNES"
     gene            7752..8936
                     /locus_tag="ACHDOB_000628"
     CDS             7752..8936
                     /locus_tag="ACHDOB_000628"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HFN3325566.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSVFERRMNI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPVALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCKKFVLPCFLKHNLKLALKACEILTSQEKTLEALKKLQGLNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGIQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            8923..9825
                     /locus_tag="ACHDOB_000629"
     CDS             8923..9825
                     /locus_tag="ACHDOB_000629"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HFN3325567.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYTIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEAENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            9762..10157
                     /locus_tag="ACHDOB_000630"
     CDS             9762..10157
                     /locus_tag="ACHDOB_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HFN3325568.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            10157..13093
                     /locus_tag="ACHDOB_000631"
     CDS             10157..13093
                     /locus_tag="ACHDOB_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HFN3325569.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRSLVQAKKI
                     TVDLNRQTDFIASAGFIYTSDQDKACYEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIEGEIEDRFGKL
                     DIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKA"
     gene            13095..13856
                     /locus_tag="ACHDOB_000632"
     CDS             13095..13856
                     /locus_tag="ACHDOB_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN3325570.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHVKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            13853..14539
                     /locus_tag="ACHDOB_000633"
     CDS             13853..14539
                     /locus_tag="ACHDOB_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HFN3325571.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            14536..15348
                     /gene="thiD"
                     /locus_tag="ACHDOB_000634"
     CDS             14536..15348
                     /gene="thiD"
                     /locus_tag="ACHDOB_000634"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HFN3325572.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGYALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGVKAVLLKGGHSEANANDVLYDGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKDYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            15338..15970
                     /gene="thiE"
                     /locus_tag="ACHDOB_000635"
     CDS             15338..15970
                     /gene="thiE"
                     /locus_tag="ACHDOB_000635"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HFN3325573.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            15948..16577
                     /locus_tag="ACHDOB_000636"
     CDS             15948..16577
                     /locus_tag="ACHDOB_000636"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HFN3325574.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLDCVKLAKTLV"
     gene            complement(16574..17026)
                     /locus_tag="ACHDOB_000637"
     CDS             complement(16574..17026)
                     /locus_tag="ACHDOB_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325575.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQAKQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLSKDGVIIAHISIALNRDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(17023..>17475)
                     /locus_tag="ACHDOB_000638"
     CDS             complement(17023..>17475)
                     /locus_tag="ACHDOB_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325576.1"
                     /translation="TLKCLLKDELISLKDNKLYLINSALILENNHTLYSPHSDFKTQL
                     QNRKDLYNDNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQLVIKLQNEELIY
                     EIKPKFNEQLNQQGLISKNISSFNLQNNKLKICLKRQTKHCLEKRILL"
BASE COUNT         6403 a         1998 c         3202 g         5872 t
ORIGIN      
        1 tgatcttgag agatattagt attgatgagt ttatagttta aattaagagt ttgagcttgt
       61 ttttcattat attgaaatcc actaaagaat aaaataagaa caatcgctat tttataatat
      121 cttgatatat aaccctcata gatgaaatat gctattaaaa atatgcaaat aataccacga
      181 taacttgggt caaaaaaacc ataaactgta aaaattcccc aattaagcca atcaaatcct
      241 aaaggatgga taaaacttat gcaaaaaatt ccacaaagcc ttaaaaaatc aaattttaat
      301 aaataacata atctaaaaag tagtccataa ataaaaccaa tgataattgg tataattggc
      361 actaaatagt ttagattaaa ataaattgaa gataaaccaa tccaccaaaa ccaaagaatc
      421 cctacaaaaa aacctatcca aaaatattgt ttagaatttt tactttttag gagtaaaact
      481 aagccccaaa tagctaaaaa tgggctaata gtttgtgtaa aaatattttc aaaaaatgat
      541 agataaatag aatttgaaag taaaattgca ataaaaaaga cttttattat tttaaaaatg
      601 atagaattag tgtttaattt ttttggaata aaggaaaaat atggcagaaa attcaatttt
      661 aacttcattg ttacctcttg tagtgttatt tgcaattttt tatttcttgg tgatcagacc
      721 gcaacaaaaa caagcaaaag cacataaaca aatgcttgag tctttgcaaa aaggagataa
      781 aatcatcact aatggcggac ttatttgcga agtcgtaaaa ccagaggagg attttatcaa
      841 agttaagctt aatgaagaca atgttactgc aaaaatttca agagaattta tagcaaagaa
      901 aattgatgcg taattctaaa atcaattatc gcttgattat ttttatagcg gtatttattt
      961 ttggagtggc tttttcactc ccttcttttt tgcagtcaga acgtggtgcg aagattaatt
     1021 tagggcttga tttgcaaggc gggctttata tgctcttagg tgtagataat gaagaagctg
     1081 taaaatctaa aataaaatca attgcatctt cattgagtta ttcttttaat aaagaaaata
     1141 ttttaaatga tggcttaaat acccatgatg atattttaga atttactttg cttgataatg
     1201 cagatattgc aaaagttgaa aatttgctta aagaaataaa aggaattaat atacaaagtg
     1261 aaaatatgca ctataaaatt tcttttacct cagaagaagt aaaaaatata gaaaattttg
     1321 cacttttgca agcagttgaa accataagaa ataggcttga tcaatttggt ttagcagagc
     1381 caacagttgc taaacaaggt gatgataaga ttttggttga acttgcaggg attaaaacca
     1441 aagaagatga actaagagca aaagagcgca tcacaaaagc agcacatttg caacttatgg
     1501 aagttgatga ttctaaaatg ggtcaagctt ctacaatgag cgatgctgag gctgcgagtt
     1561 atggactgat tttagtgtct gattctagaa atccaaattt aaaatatacc ttaaaaagca
     1621 tacctatttt agatggatct atgcttactg atgctagagt agggattagt gataagagta
     1681 attatcctgt gattaatttt actttaaatg ccgagggttc taaaaaattt gctgattata
     1741 caggagcaaa tgttggaaag cgtcttgcta ttgtacttga taataaagtg tattctgctc
     1801 catctatcaa tgaacgcata ggcggaggta gtgggcaaat cagtggagct tttacccaag
     1861 aagaagcgcg tgatgtggcg gtagctttaa gaagtggagc tttgcttgcg cctgtaaaat
     1921 tacttgaaca aagaagtata ggaccatctt taggtgctga tagtattaaa atgagtatga
     1981 tagcattaat cggtgcatcg gtttttattg taatatttat gatgatgtat tacggtgtgg
     2041 caggaatttt tgcaaatatt gcaatgttgg ttaatgtttt ggtagtagtg gctgttatgg
     2101 ctatgtttgg agcaacttta actttaccag ggatggcagg acttgtttta actgtgggta
     2161 tggcggtaga tgcaaatgtg attatcaatg agcgcatacg agaactcttg cgagatggag
     2221 taaatataag agctagtata gaacaaggtt ataaaaatgc tatgagtgcg attatagatt
     2281 caaatatcac ttctttagtt acttcggtag cactttatgc ctatggaaca ggagcagtta
     2341 aaggttttgc tgtgactttg ggaattggta ttgtcgtttc tatgattaca gctattttag
     2401 gaactcacgg aatgtttgat tattttatgc aacgcataga aaaaagtaat aatacaagat
     2461 tttggtttgg ttacaggaga agataatgca gttttttagc gaaaagaaaa tttatgattt
     2521 tatgagaatg cgttttgctg ctatttctct ttcttttatt ttgttttttg gttctattta
     2581 tttgctttgg gataggggtt tgcaatatgg tattgatttt agcggaggaa ctttagttca
     2641 gcttaaatat gaaaatgcag ctcctataac acaaatccga gaaattttag aaaaacaagg
     2701 aacttttcaa aatttatctg taactgaatt tggaagcaat gaagaagtaa ccatacgctt
     2761 tttaggaagc aacgataatg taagcaatga tataggcgag catataagca ctcttttaaa
     2821 ggatacggga aaatttgaag tgcgtcgtgc tgatgtggta ggtccaaaag taggtgatga
     2881 acttagaaat aaaggactta tggctatagc tgtatctttg atagcaattt taatttacat
     2941 agcgttgcgt tttgagtggc gttttgctct tgcggctata atcagtgaaa ttcatgatgt
     3001 tgtgattact ttaggggcaa tttctttatt taaaattgat gttaatttag atactttggc
     3061 tgctgtttta actgtgcttg ggtactcttt gaatgataca attattattt ttgatagaat
     3121 cagagaaggc attaaaacca gtaaaaaaac cgaacttgca cctattatca atgaaagtgt
     3181 ttcagcaact ttatcaagaa cggttttaac ttcagggtta actttagcaa ccgttgtgat
     3241 actttatttc tttggcgggg aaatgataca aggattttct ttggctttaa ttgtaggtat
     3301 tatagcggga actttaagct ctatttttgt tgcaagtccg acattattat ggtttaaatt
     3361 tagtgtgctt gagtttagaa ataaagaaat tgaaaaagca aaaagaaaac aagataaaga
     3421 acgcaatcgt gcaatgtatg aaaaaggaac agtgtaagga gaatttatgg cttatgaagc
     3481 aagtttaata gaaaaaaaat ggcaaaaaat ttgggatgaa aatgaatatt ttgagccaaa
     3541 agatgattta aatttgccta aaaaatatat tttatcgatg tttccttatc ctagcggacg
     3601 cattcacatg gggcatgtaa gaaattatac tataggtgat gctttagcaa gatattatcg
     3661 caagatagga tttaatgttt tacatcctat aggttttgat agctttggta tgcctgctga
     3721 aaacgcagct attaaacata aaattcatcc taagtcatgg acttatgaaa atatagctta
     3781 tatgaaaaaa gaactttttt ctttaggttt ttctttttct aaaaaaagaa tgcttgctac
     3841 ttcagatcca ctttatacaa aatttgagca agaatttttt attaagatgt ttgaaaaagg
     3901 tttgatttac actaaagaag caaatgtgaa ttggtgtgag caagatcaaa cggttttggc
     3961 taatgagcaa gttgaagacg gaaaatgttg gcgttgtggt catgaagtgg tgcagaaaaa
     4021 aatgccaggt tattatgtaa aaatcactgc ttatgctgag gaacttttaa aagatttaga
     4081 agaattaaaa gataaatggc ctaatcaagt tttaactatg caagaaaatt ggattggtaa
     4141 aagcgaaggt ttggaatttt ctttaaattt agacgaagaa agcaagcaaa aaactaaaga
     4201 aagttcttta gaagttttta ctacaagagc agatacaatt tatggagttt cgtatattgc
     4261 tttagctcca gaacataaaa ttgttcaaaa tttgctttcg caaaatttat taaatcaaga
     4321 tgtattaaat aaaatcaaag ctattcaaaa tcaaagccca agagaaagac aaagttctga
     4381 aaaagaaggt tattttttag gaatttatgc cattcatcct ttaagcggag aaaaaattcc
     4441 tttatgggtg gctaattttg tcttggctga ttatggtagt ggagcggtta tggctgttcc
     4501 agctcatgat gaaagagatt ttgaatttgc aacaaaatat aatcttgcca tcaaacaagt
     4561 tattcaaact caagaaaatt taccttatac gcaaaaatca ggaaaattaa tccatagtca
     4621 agaatttgat aatcttgatt gtaatgaggc aagattaaaa attatttctc agtttgaagc
     4681 taaaaatata ggaaaaaggg ttgtaaattt taaaattcgt gattggggtg tttcgcgtca
     4741 aagatattgg ggtgcgccta ttcctatgat taaatgtcaa agctgtggta tagtacctca
     4801 aaaactagaa aatttaccta ttactctgcc tgaagatgtg caaattacag gagagggcaa
     4861 tccacttgat aaacatccaa cttggaaaaa ttgtatttgt cccaaatgtg gcaaagaggc
     4921 tcaaaaagaa agcgatactt tagatacttt ttttgaaagt tcttggtatt ttgcacgttt
     4981 tgcaagtgat gagaaaactt ggcaggaaaa agctttagat gaaaaaagtg tgaagtattg
     5041 gatgagtgtg gatcaatata taggtggtat tgaacatgca atcttgcatt tactttatgc
     5101 gagatttttc caaaaagctt taagagactt gggttattta acgcaaaatg aaccttttga
     5161 tagactttta actcagggta tggtgttaaa agatggtgct aaaatgtcaa aatcaaaagg
     5221 caatgttgta gatcctgatg agattataga aaaatacggt gctgataccg caagactttt
     5281 tatacttttt gctgcgcctc cggctaaaga gcttgaatgg aatgatgatg ctgttgaagg
     5341 ggcttataga tttatttgca aactttatga tagggcgcaa aatgttaaaa aaggtgagct
     5401 tgtagaatta aaacaagaaa atttaaacaa agaagaaaaa tatgcaagat taaaggtata
     5461 tgaagctttg aaaaaatctt ttgaagttta tcatcaaagt tttgctttca atactttaat
     5521 tgcagcttgc atggaagctt taaatgcttt agcgctttgt aaaaacgaag ctttggagca
     5581 agaggctttt tatattattt taaatatttt agagcctatt attcctcatg tttgttttga
     5641 gcttagcgag gagcttttta aatgtaaaaa tttcaaaaaa ttagaactta aagaagagat
     5701 ttttgtaaaa gatactttaa atttagctgt aagtattaat ggtaaaaaaa gggctgaatt
     5761 tgaaatttca agtagtgcga gcaaagaaga aattttagct tttgcaaaag aaaatactgc
     5821 taaatggctt gaaggtaaga gtatagttaa agaaatttat gtggaaggaa agctagttaa
     5881 tctagtgatt aaatgaaaaa gattttaatt ttttgtatag gtttattttt aggtgcttgt
     5941 ggatatgttc ctacatcaaa aatcgctaat aatattttcg atgagaaggt ttatgttaat
     6001 gttgaattaa gtcaacaaga cccaaaaaat agtatctatg ttgccgatac tttaaaagaa
     6061 atggtaattt caaaattagg gcgtaaactt gctttaaaac acgaggcaga tgatgtaatt
     6121 aatgttaaaa tgaataattt agaatttatt cctttagctt atgataaaaa tggctatgtt
     6181 attagttata aagctaaatt aaatttagat tttaatgttg tctttaaaga tggttcaagt
     6241 caggctttta gtacaagtgg aagttataat tttgaaattt ctccaaatag tattattagt
     6301 gattctgcaa ggtatgaggc tattcgagca gcttcaagcg aggcatttga tgagtttatt
     6361 tccgtaattg ctattaaagg gcaaaaacgt gattccaaat actaatgaaa tagcaaagca
     6421 aactttaatt gcattaaaag aaagaaaact aaaaccaact cctgaaaatt atacggaaat
     6481 ttttgaagaa ttatctttaa aatatggtat cacaagctca aataaagcta aacttgacaa
     6541 atacaaaacc ttgcttttac cgatttatca acaagaatta aattctaaaa ctataagaag
     6601 tttagaagaa ctaattagtt ttttaatttc tgttttaaat agacaaagcg gaaaacaatt
     6661 tagtgaattt tttgattttt tatatactat atctaaaact ttgcaaataa gtaaggataa
     6721 aaagataaga gatttggcta aggtgacttc gattagaatt tctaaaacta tggatagtga
     6781 aagtatttac ttgcttacta aaaaatggaa agagcttgaa agaaattacg atgaaaatga
     6841 cttagaagaa caagctcgta aatatggcat tagtaaatat gatgattatg atagcgtgat
     6901 taaaaaactc ttagttaaac ttgaagagcg tagttatgag cactttagtg aattattatg
     6961 cttgggttta aatccttcat tggtggaaga tttaaaaatt caaggtttta tacaaaattt
     7021 aacacaaaag ccttttgtga taggtgaaga aaattttaaa aatgaactaa tggaatttat
     7081 aaatcatcgt ataatggttg ataatatgta tgtccaaaaa aatttaaatt tttttaatga
     7141 taatctaaaa aaaatctatg aattgcttgt cttacttaat aaatcgaatg aaaaaaatat
     7201 ggattttatc aatactttaa aaccagatga aaatggggaa gtaaaactta gttttgagga
     7261 tttaaaacta aaatttaaac aacttggaga aaaaattaca tctttaaata atcaaattga
     7321 attcacgcaa agcttggagg agagagaggc ttggagtgtt cttaaagagc ttgataaaat
     7381 ggatgaaaat tttaataagt ataaagttaa ttattcttta gctttatttt ctatagtaaa
     7441 ttaccgtttc attatggaaa aatacggcat gggaagtttg aatgaaattt ttgttcgatt
     7501 taaaaaaatt ttaaaagatt cttgtagcga atttgatgaa ctgtggatga tagatgaaaa
     7561 gagttatttg attgtttcgc caggaaaaag caaagatgaa attacacagc ttgtaaatac
     7621 aaatcttaaa actatagaaa attttagatt tatttataag caagatatta taactcctaa
     7681 aattcacgtg gcttatcttg ataagcaaag taagccaagt attaatattt tagatgagtt
     7741 aataaagcaa attgcagcgg ttaatgaaca acataatgaa agttgagaat tttttagctc
     7801 aaaaaagtat aaattacgat aaaattgatc gttttttgat gtttagaatg tatgaaaaat
     7861 ataagaaata ttttaaaaat attcctataa ttcaacttat aggcacaaat ggtaaaggta
     7921 gcacgggtag atatttaacc caacttttag aaaatttaaa ttataaaata gggcattata
     7981 ctagcccgca cattttcagt tttaatgaaa gattttatct tgatggtaag attgcgaatg
     8041 atgaagaatt agaacaagct catataagac ttgaagaaat ttttaaacaa gacttgcaaa
     8101 aattaagtta tttcgaatat gctacttttt tagctatgat tttatttcaa aaatgcgatt
     8161 tcattgtttt agaagcagga gtgggtggag aatatgatgc tacttctgtt tttgaaagaa
     8221 gaatgaatat ttttacaaga attggatttg accatattca aattttgggc aattctttag
     8281 aagatattgc aagaaccaag cttaaagtta tggcgcctgt agcacttata agtgatgagc
     8341 aagagcaaaa tgttttaaat ttagcaaaaa aaattgcttt tttaaaaaaa gctaatttgc
     8401 aagtttcttc cttaaatcct tttttgaaag aaaaatttga gatttattgt aaaaagtttg
     8461 ttttaccttg ttttttaaag cataatttaa agcttgcatt aaaggcttgt gaaattttaa
     8521 cttcgcaaga aaaaacctta gaagctttaa aaaagttaca agggttaaat ttacaaggaa
     8581 gatgccaaga aatttctcca aatttttttg ttgatgtggg tcataatccc atggctgcta
     8641 aggctatgct tgataaattt caaggagaga aaataaatct tatttataat gcttatttgg
     8701 ataaggatat ttttcaaatt ttaaatacat taaagcctat tattgataca atacaaatat
     8761 ataaatataa aagtgcagaa cgaaagctgg ctgatgatga aatttatagt attgcatcaa
     8821 agctaggcat acaatgcaaa gaatttgtaa aattagaaga gaataaaaaa aatctagttt
     8881 ttggttcttt tatgctggta gaaaattttt taaaggagtg gtgtggtaaa aaataaattc
     8941 actattacca ttacagatat taacggttca agacattttt atttaaatca aataatcaaa
     9001 aaaatagttt tttatactat tgcttttatt gttttatttt tagtttttag tggtttttat
     9061 atcaaatatc tcgatagcaa acttagcgat atcagtgaaa agcgtgagga gcttttgaaa
     9121 aaaagcaaag aattggaatt atctaattcg caaatgcaaa aaagcataga agaaaaaact
     9181 cagcagtatg cagctataga agataaaata gcttcttttg aagaggcttt gggcttagaa
     9241 gcagaaaata atcttacaat tagtgcaaga cttgataatc ttcagcttac caatgagcag
     9301 caacttggaa ttttgggaca aattcctaat ggatggccta ttgaaaataa aggcattaca
     9361 ggaaattttg gctggagaga gcatccgctt ttaaaaagaa gggaatttca tcctggtatt
     9421 gatttaagag cagaaattgg tacccctatt tatgcaccag caagtggagt agtggaattt
     9481 tcaggttata gtgataatgg ctatggctat aatgtaattt tattgcataa ttttggtttt
     9541 aaaacagtat ttgctcatat gatgcgcaaa gaagtggtca aagcaggtca atttgttaat
     9601 aaagggcagt tgataggtta tagtggcaat acaggtcttt ctacggggcc gcatttgcac
     9661 tatgaggtaa ggtttattaa taaaacttta gaacctttgt attttttaaa tttgcaaaga
     9721 aaaaatatga atgatttttt taatcaagaa aggagagttc catggcaatc tttaataaag
     9781 gcggtatcag cccaacatcc agctctagct cagaaacaac agtaatttct tcaggtgcga
     9841 gaattgaggg taaattttat tttgcttcta tgctccatgt tgatggagag ttaagtggta
     9901 ttattcattc tgaaagcatt gtggttatcg gaaaaaatgg aaatttaaaa ggtgaattac
     9961 aagcagataa aattgtagta aatgggtgtt ttgaagggca acttgaggct aatagtttag
    10021 aaattttagc gggcggagtt gttaatggtg atatttcaac gcaaaaaatt tctatagaaa
    10081 atggcggtcg ctttaatgga actagtaaaa ttaaagaaga tactatcaaa cttattgaaa
    10141 ataacaacga agaataatgc aagcttcatt ttatgaatac ttacaaaatc caaaaatttg
    10201 tgaacttttt ctttgtaaag atgaaaaaca agcagattta ctcgctcaag tttcacgatt
    10261 taagggttta aaaacctttg ttttacctga ttttagagcg cagtttggag atgatttaag
    10321 ggctttttct aaagaacttt ttgatctttg taagatttta aatgcttatc ataaagaaga
    10381 agaaaaaaaa atccttattt ctcctttaaa tactgtttta aaaaaacttc cttcaaaaaa
    10441 acatttacaa aattatcata tcgataaaaa acaaaatttt gatttgaaat gttttgaaga
    10501 tgaaatttca agattgggat acgaatttgt agatatagtt caggataaag gtgaaatttc
    10561 aattcgtgcg gatattattg atattttttg tatcaatgaa gaaaatccta ttagaatttt
    10621 actttttggc gaagagattg aaagtataag atattttgat ttgcaaagtc aaaagtctat
    10681 tcctaacgaa ctagaacatt ttgaaatttg tcctttttta aaatattttg acaaagaaaa
    10741 ttatgaaatt tttaaggaca aattagaaga ttttcaaagc gatactttaa tacatgatat
    10801 caattcttta ggcttttggt gtattgatga tttttttgat tatttagaac ttgatttttt
    10861 agcttgtgaa aagtttgata ttaatgaata tgaaaaagat ataagttttg tgaatgcaaa
    10921 aattttacct caagctaaaa aatttaaaga attgcaaagt tcttacaata aagatttttt
    10981 tgaatttcat aaaaataaaa aaatcacact tttagctaaa aacgaagctt tatttaaagc
    11041 tttagagctt gaagatactc aaaatatcca ttttgtaaaa agtgatttaa ggcttaatct
    11101 tattagtcct gaagagctaa ttatttcttt aaatcaaaaa gaaaaacaaa aaacaagaaa
    11161 aaaagctagt ttgattatag atgagcttaa aaatggggat tatatagtac acgaagatta
    11221 tggggtaggt aaatttttag gtcttgagat gatagtgata agcggagcaa aaaaagagtt
    11281 tgttgctata gagtatcaaa attctgataa gcttttatta ccagtggaaa atctttattt
    11341 gattgataaa tatttgggcg tgagtggatc tattccaagc ttagataaac taggtaaaac
    11401 aagctttatt aaacttaaag aaaaattaaa gactaaactt ttagccatag cttctgaaat
    11461 tgttattatg gcggctaaaa gatctttggt gcaagcaaaa aaaattacag tggatttaaa
    11521 tagacagact gattttatag ctagtgcggg ttttatttat acaagcgatc aagataaagc
    11581 ctgttatgaa attttgcaag attttcaaag tggaaaagtc atggataggc ttttaagcgg
    11641 tgatgtgggt tttggaaaaa cagaagtcgc tatgaatgct atttatccag tagttaaaag
    11701 tggattttgc gcatttttat ttgcgcctac gactttgctt tctcatcagc attataaaac
    11761 cttaaaaaag cgttttgatc cttttgatat aaaggttttt aaactggatc gctttacaag
    11821 tagtgcagaa aaaaaacaag ttttacaaaa tttaaaagaa aataaagctt gtgtagttgt
    11881 aggaactcat gcacttttaa gtgtagaatg tgaaaattta gcccttgtta ttattgatga
    11941 agagcataaa tttggagtga agcaaaaaga aaagcttaaa gaaatcactc aaaattcaca
    12001 tattttatcc atgtcagcaa cccctatacc aagaagctta aatcaagctt taagttctat
    12061 aaaatcttat agtgttttgc aaactccacc agaagataga atggatgtaa gaacttttgt
    12121 caaagaaaat gatgacgcac ttttaaaaga agctatagca agagagttaa gacgtggtgg
    12181 gcaaattttt tatattcata atcatattgc aagtatagag caatgtaaaa agcatttatt
    12241 agaacttttt tctactttgc gtattttgat tttacattct aaaatcgatg ccaagatgca
    12301 agaagaagaa atgttgaaat ttgaaaacaa agaatatgat ttgcttttaa gtacctctat
    12361 cgtagaaagt gggattgatt taccaaatgc aaatactatc atagtagaaa aaagcgatcg
    12421 ttttggcatg gctgatttgc atcaattgcg tgggcgtgta ggaagaagtg ataagcaagg
    12481 ttattgttat tttttaattg aagataaaaa tgctattaca aaagatgctt taaagcgtct
    12541 agtttcctta gaaagtaatt cttttttagg cgcaggttct attttggctt atcatgatct
    12601 tgaaattcgt ggcggtggaa atttattagg cgtagatcaa agtggacata ttgagcaaat
    12661 tggatatagt ttatatctta aaatgttaga agatgaactt aatgctttaa gtaaaaatga
    12721 agtggatcaa aaagaaaata aacttgattt aaaactcaat gttaatgcct ttttaaacag
    12781 cgaacttatc agcgaagatc gcttaagatt agaactttat agaagactta gcaagtgtga
    12841 gcaagttcat gaggtttatg agatcgaagg tgaaattgaa gatcgctttg gaaaacttga
    12901 catttatact aagcaatttt tatctttgat tactattaaa attttagctt taaataaatt
    12961 taaaagcatt agtaactatg agcaaaatat tcaatttact gctttaaatg atgaaaaaga
    13021 actcatcaag gcaaaaagca aagatgatga tgatatttta gaggcaattt taacgcattt
    13081 aagaaaggct taaaatggat tggaataaaa cttatgcagc aatttataga gcaagaaaag
    13141 attatttaaa gcctattttt gaaatcgatc ctattgcttt aaaagattta gtaggtatgg
    13201 aaagtcaaaa aaaagcactt tatgaaaata ctttaaattt cattcaagat aagggagcaa
    13261 atcacgcact tttatgggga tctaagggca ctggaaaatc aagtttaatt aaagctatat
    13321 ttaatgaatt taaagaacag ggcttaagac ttgtcgaatt aaataaagaa gatttatttg
    13381 ccttagcaga tatcatcgat gaaatcagat tagaaaattt taaattcata cttttttgtg
    13441 atgatttttc ttttgaaaag ggagatgata gttataaatt tttaaaacct ttacttgagg
    13501 gaagcataga aaaagcccca aataatgtaa ttatttatgc gagttcaaat cgtaggcatt
    13561 tattaagtga aagcattact gataatcttg atacgcaaat cacacataca gaacttcatt
    13621 taagcgatgc tgctgaagaa agattaagtt tgagtgatag atttggtttg tggttaagtt
    13681 tttatcaggg aaatttagaa gagtatttaa agatgataga tttttatttt aaagattatt
    13741 cttgtgataa agagcttttg cacgttaaag ctaaagaatt tgctactcta agagcaagta
    13801 gaagtggtcg taccgcaaag caattttatt tagcttttaa ggagaatttt aaatgactgg
    13861 agcacaaatt tttaccaagc ttttaaattt ggatttaaat tatcatgatt ttgattggct
    13921 tgaaaatcaa ggattgagtg aatttgagct tttaatttct gtcgttttaa ctcaaaatac
    13981 aaattggaaa aatgtcttaa aagctttaga aaatttaaaa aaagaaaata ttgcaagctt
    14041 agaacaaatc aatactttat ccaatttaga acttgcaact ttaattaagc ctagcggatt
    14101 ttataatacc aaaactaagc gtttaaaagg tttggtagaa agtatcataa acacttatga
    14161 aaatttagaa aattttaaaa caaatgcaag cagagaatgg cttttaaata tcaaaggttt
    14221 aggttttgaa agcgttgata gtattttaaa ctatctttgc aaaagagaga ttttggttgt
    14281 agataattat agtttgcgtt tggcttttta cttaggttat gagtttgaaa attatgaaga
    14341 attaagagaa ttttttcaaa gtgacataga gagtgagcaa gaaaatttgt ataaaatttt
    14401 aggaaaaaaa tgcgaacttt acgaacttta tcaaattttt catgctttga ttgtagcttt
    14461 tgcaaaacag agttttaaag gacaaaaatt aagccctaag ggtgaagaat ggatcaaaat
    14521 tttaaaggaa gatttatgaa agcaaaagga agtgaactta tacctgtttt aactatagca
    14581 gggagtgatt gtagtggtgg agcagggata caagccgatc ttaaaacctt tagtgcacac
    14641 aatctttttg gtatgagtgt ggttttaagt gtggtagctg aaaataccgc aagggtgatt
    14701 tctgtacacg atatacctac tcaaagcgtg gatgaacaaa tgcttgccgt gtttgaagat
    14761 atagtgccaa aggcaactaa aatcggaatg ataggttctt gtgaattaat gagctgtgta
    14821 gctaaaaatt taagcgagtt taaacctcaa aatgtagtta ttgatcctgt aatgtttgcc
    14881 aaaaatggct atgctttaat gccgcaagaa aattgtgatt ttttcaaaca aactataata
    14941 aaatttgcag acattcttac tcctaatatt cctgaagcag agtttttatg tggttttaag
    15001 atcgctaatg aagagcagat gataaaagca gctaagcatt tatgcagctt gggggttaag
    15061 gcagttttac ttaaaggcgg acatagtgaa gcaaatgcca atgatgtgct ttatgatgga
    15121 aaagaaattt atattttaaa aggcgaacgc atagaaacta aaaatactca cggtacaggt
    15181 tgtacgcttt cttcggctat tgctagtaat ttagctaaag gcaaggattt atttcacgct
    15241 gttagtgaag ctaaagatta tgtaagaaat gcgatttatt attcacttaa tcttggaaaa
    15301 ggttgtggtc ctacaaatca ttttttcaag tttctagatg aaaaataaat tagatcttag
    15361 cctttatttg gttgctacta agggaaataa aagcgaggag tgttttttaa atactttaga
    15421 aaatgctata aaaggcggag taagtatcat acaacttcgt gaaaaagagc ttaatgcaag
    15481 agaattttat aaactaggct taaaggtgca aaaactttgc aagtcttata aaataccttt
    15541 tttgattaac gatagggtag atatagcttt agccttagat gctgatgggg tgcatttagg
    15601 acaggaagat ttagaagcaa aattagctag aaagctttta ggagatgaaa aaatcatagg
    15661 cttaagtctt aaaaagttag aacaacttga gtttatacaa ggagtaaatt atctaggttg
    15721 tggagctatt aaggcaacgc ctactaaaga aagttcgctt ttaagccttg agcttttaag
    15781 tcaaatttgt gataaaagcc ctataggggt tgtagccata ggtgggattg acaaagaagc
    15841 acttgttgag ttaaagggta taaatttaag cggtgtggct gtggttaggg cgatcatgga
    15901 tgctaaagat gcttttttgg cagctaaaga gctaaagcgt aaaatctatg aaaatttatc
    15961 tcttaaatga aactcctttt gaaggggtgg aaaatcttat tttaaatgag attgtttttt
    16021 atgattttag tgtggatttg agtttgtatg atgctttaat ctgcacttca aaaaatgctt
    16081 taaaagcttt acaacatgca aaaatcactt taaatttcaa actcaattta tacgctgtgg
    16141 gacaaagtac agctcaatac gctaaaaatt taggttttaa aaagattaaa attccatcaa
    16201 aggcttatgg aaaagatctt tttcttgaat ttaaagagga gttaaaaatg caaaaatgtt
    16261 tgtatttaag ggctaaaaat attgtttcaa ctttaaattt ggatcttaaa aatgtaggtg
    16321 tggatttaga tgaaatgata gtttatgaaa atgtttttaa aaaaggcgac aaaaagctta
    16381 tctatcctgc tatttttata ttcacctctc ctttaagtgt agaaaatttt ttaaaatttt
    16441 atagtttaaa agaagaagat aaggttgtag ttatagggca aagcacagca aagaagcttt
    16501 taaattttaa aaatctttat atatgcgaaa atcaaagtct tttagactgt gttaagctcg
    16561 ctaagacttt ggtttaattt tttaaattcc aaaaattttc tttgggataa ataataatgc
    16621 tttttgtgag taaaatttca tcattgacgt ttttatcacg atttaaagca atactaatgt
    16681 gggctataat aacaccatct ttgcttaaat ttgcatcggg attgaagttg gaaaatttaa
    16741 aattaacaca ttgtgcaata ggataaaaat attttatttt aatcaaagct tttgtgtaat
    16801 taaaatatat attgtctaaa cattctttat tttcttgctt tgcttgatat aaaaaatatt
    16861 tagaaaattg cgttgcattg tgacttaaaa tttgagcttg aaggtagtaa taactatctt
    16921 ggattatttt tggagtatag ctggatatgt ttaaggtcaa gctcatccat agacttatta
    16981 gtagtattaa aaaaattgtc caaattaaaa cataagcttt tttcacagta aaattctttt
    17041 ttcaaggcaa tgttttgttt gtctttttag gcaaattttt aatttattgt tttgcaggtt
    17101 aaatgagctt atgtttttag aaattaatcc ttgttggttt aattgttcat taaattttgg
    17161 ctttatttca tatataagtt cttcattttg caatttgata actaattgag cttgcaaagg
    17221 aataaaacta cctgtaaaat ttgcagatat accattttcc aagatagata ttttttcaat
    17281 cttattaatt ttataagcat agctaatatg ttcattgtcg ttatataaat cttttctatt
    17341 ttggagttgt gttttaaaat cagaatgagg tgaataaagt gtatgattat tttctaaaat
    17401 aagagcagaa ttaataagat aaagtttatt atcttttagg ctaattaact catcttttaa
    17461 aagacatttt aatgt
//
LOCUS       DAZAND010000024        17065 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.024, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000024 DAZAND010000000
VERSION     DAZAND010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17065
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.024"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..429
                     /locus_tag="ACHDOB_000639"
     CDS             <1..429
                     /locus_tag="ACHDOB_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HFN3325577.1"
                     /translation="KYFRNYIRKNFSNAFVSEFHQGLKRSFSYLDKDRKKLYDFENIK
                     EIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALVYKNEQAIVFE
                     YETCQKLPKNFKEECRIAKIPRFLRAYLYNHKIDISSLSF"
     gene            complement(412..1125)
                     /locus_tag="ACHDOB_000640"
     CDS             complement(412..1125)
                     /locus_tag="ACHDOB_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HFN3325578.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLVLMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYTLHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYNNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVASTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLGYQRILKLKAKA"
     gene            complement(1127..1816)
                     /gene="dut"
                     /locus_tag="ACHDOB_000641"
     CDS             complement(1127..1816)
                     /gene="dut"
                     /locus_tag="ACHDOB_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HFN3325579.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFTWKHWKNISSPTNWENVRIEIVDIWHFILSLLLEEYRDKNGKDLKAIA
                     TEVNAVSVFQGFCKEEEHPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNHGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEEYYKKA"
     gene            complement(1853..2416)
                     /gene="ciaI"
                     /locus_tag="ACHDOB_000642"
     CDS             complement(1853..2416)
                     /gene="ciaI"
                     /locus_tag="ACHDOB_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HFN3325580.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSVSYTNNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQTDDKDINASMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            2491..2898
                     /locus_tag="ACHDOB_000643"
     CDS             2491..2898
                     /locus_tag="ACHDOB_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325581.1"
                     /translation="MDERILEFIKNEQLLSWAVIDEKGAYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            2970..3752
                     /locus_tag="ACHDOB_000644"
     CDS             2970..3752
                     /locus_tag="ACHDOB_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3325582.1"
                     /translation="MLNVIHALFFRELKTRFGANRHLGYLWVVGEPMSITLAITAIVT
                     IIREYHHQVMPEGISIFMFLISGIMPYFMFRSIVTQLMNGTQANLALFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFVGWFFRFDVFPVHLLGVLFCIFLLMCSAFALGVCFA
                     IIWHFVEPLRTLLTYFSIVFYWTSGVILPTWLTPRPLLDILYYNPLLHIFELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFVYYYNRQALTAVKKE"
     gene            3749..4411
                     /locus_tag="ACHDOB_000645"
     CDS             3749..4411
                     /locus_tag="ACHDOB_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325583.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGGNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGQE
                     LQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHDVAEIKEWCDKIIYMKNGQITVYDDVDEGIAAYQG
                     KA"
     gene            4411..5529
                     /locus_tag="ACHDOB_000646"
     CDS             4411..5529
                     /locus_tag="ACHDOB_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HFN3325584.1"
                     /translation="MEENKTLLEKIKDLGIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLSNTSTASEDLNYLKGYIESSDMLKILDEKIKLKSL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKIYSDKTTGLLRVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMVFAENEVQKYKERYQKAQNDLIAFQNKYGVFNPLKQA
                     ETKASLVAQIEANLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIESTFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIAKFIKMIIEEHKY"
     gene            5531..7189
                     /locus_tag="ACHDOB_000647"
     CDS             5531..7189
                     /locus_tag="ACHDOB_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HFN3325585.1"
                     /translation="MKKILILFFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKAHVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVNAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKGVARTQKELINAQLKELETLALT
                     SSSVTAQGAAIRAQQAKTILEFIQRAKQVQPKGQIVIDNPKSYGSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            7199..8146
                     /locus_tag="ACHDOB_000648"
     CDS             7199..8146
                     /locus_tag="ACHDOB_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HFN3325586.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLSKNLDENFNQAINLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDALIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQGDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKARNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKASDKPRFDFKAKEIMSTNPKVVDA
                     DAMASEAEEIMLKYKIKEIIVGKEEKVVGIIQLYAIGNV"
     gene            8146..9777
                     /locus_tag="ACHDOB_000649"
     CDS             8146..9777
                     /locus_tag="ACHDOB_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactosyltransferase-related protein"
                     /protein_id="HFN3325587.1"
                     /translation="MALLSVIIPFGLSKERPYIEERVLQKAKSFQSDENIEFIFVEGY
                     SSKNHELKNFIQTNHHIYLKDMNQKAFSQGRCRNLGASYAHSNVLLFLDVDCYISLDN
                     FEKILKLVQIKNISQNINALVVLPVVYLNKDANEKLKQYDEKFWDILIQEDLFTAKNT
                     WVKFFAPSSTSSIVINKHQFLRLGGNDENFIGHGYEDFDLFARILKACVSFEKMPTNL
                     SYDARNWNFFNFKGFRSWFSLLGHEACFYGIYMYHFYHVEPNQNAYMQNKDKNHQLFY
                     KHLKNIKKHDLKPLQVFKAKGEKVLMLFKDQNYDFKDISVYVGETIYKNISDFFIAKE
                     LKYKLLLDFLQQEKITKIFLDASIKEEIDGIDYCDIFYFQKGILPHSWFFAKNLDLDY
                     KQDLILSEQKLYQVKEYFLTLKKDEKKVILDFLSQNNDDKCDLYEMLYYLINEVYSFE
                     HDGIFYQIIIDKEKMLMAQKHDKSFYPLGSFIYKPYLYELKSIRPFSFLMKILGLEYL
                     GAMISHTKFYRLARKLFFNPKGFFEDLRAKKNANI"
     gene            9764..10813
                     /locus_tag="ACHDOB_000650"
     CDS             9764..10813
                     /locus_tag="ACHDOB_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002912505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFN3325588.1"
                     /translation="MQTYKCLVKPKISVIIPSYNSAKYIKECLDSVIFQSLKEIEILC
                     IDAYSIDGTIDILKSYKKQDSRIKIIFSKKKSLGYQINLGLKEAKGEYCTIVESDDYV
                     KIDMCEKLYRLACNQDCQVVKSDFIGFEDKEKERIFKNLSICYDQALYNKKTNSYLNP
                     SIIINSWNMNQSSLYKMDFIKKYNIRANETKGASYQDIGLWFQILSLASSIYFCQEGF
                     YFYRQDNENASVKSKDKIYCVCDEFEFLDKFFDKNLELKSRLQDVFYCFKFKIYSWNL
                     KRIDDKYKLEFLYKFSQDFSLIYDKLDKTVFKVSEISEISCIVQDPSKYYKKYNSVFY
                     SIKKKIFRIKRKYFR"
     gene            10817..12187
                     /locus_tag="ACHDOB_000651"
     CDS             10817..12187
                     /locus_tag="ACHDOB_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFN3325589.1"
                     /translation="MNKTVGVVIPIYNVEKYLKECLDSVVNQTYKNLQVVLVNDGSTD
                     ENSFNIAKEYTLKDERFILFDKKNGGHSSAKNVGIEYFSGEYILKNKTQILEKNSLIE
                     FNIEGNNPHEIYTVYKSYEAFHTTKDFYPSIDYIIFLDSDDYWELDCIEECVKRMNDV
                     DVLWFDYKFLNKNKATQMEIYNYTKEQIITPLQWLKRTREIGNYLFWYAWQGMIDFTF
                     LQKINIKFINQIIHEDHHFGIALFSMTDNIYIYPEKKYIYRFRESSVSNQKQYSINTN
                     SYLYTLYIEFDKNTYELKRYQMSMNWIFTCLELIKVLKYNSNNAISILVEQTFLPTLL
                     DRTLIIFFIDKDPLLLKNKLQELKDYFKKFHLSGAECLKYQLSYRLGQFVLSNYRSLR
                     GLIKIVLNAKKMILNIQKEQELFQATIKNYPFIVFSSSSEDLESRKIKKHYSYRLGRF
                     LKIILI"
     gene            12237..13193
                     /locus_tag="ACHDOB_000652"
     CDS             12237..13193
                     /locus_tag="ACHDOB_000652"
                     /EC_number="4.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002912510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0048040 - UDP-glucuronate decarboxylase
                     activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0042732 - D-xylose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronic acid decarboxylase family
                     protein"
                     /protein_id="HFN3325590.1"
                     /translation="MKVILITGGTGFLGSNLCKRLLSEGNKIICVDNNYTGRMENIKE
                     LLENENFTFIEHDICKPLKITQKLDQIYNFACPASPPAYQGKHAIKTTKTSVYGAINM
                     LELAKEHNATILQASTSEVYGDPLVHPQNEEYRGNVNPIGIRACYDEGKRCAESLFFD
                     YHRHEGVDIKIIRIFNTYGENMDSNDGRVVSNFICQALSGKDITIYGDGSQTRSFCYV
                     DDLIDIIIKVMNSSKDFQGPINTGNPDEFTIKELAQKVIEKTGSKSKIIYKDLPLDDP
                     TQRRPDISLAKAKFNWEPKINLDEGLEKTIKYFKEKITEFKG"
     gene            13202..14500
                     /locus_tag="ACHDOB_000653"
     CDS             13202..14500
                     /locus_tag="ACHDOB_000653"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HFN3325591.1"
                     /translation="MKIGIIGTGYVGLPTGVGLAELGNDVICIDREKSKIDALNSGIL
                     TIYEDNLEELFHKNIKEGRLKFTTSMQEGIKDADLVIIAVGTPPHPVTKEADMKYIHA
                     AATELADYLTRYTVIATKSTVPVGTGDDIESLISRKNPNAEFDVLSLPEFLREGFAVY
                     DFFNPDRIIVGTNSQRAKAVIEKLYEPFKGKSELLFVSRRSSETIKYASNAFLAIKIH
                     YINEMANFCEKAGADILEVAKGMGLDTRIGKRFLNPGPGYGGSCFPKDTLAMAFMGKQ
                     NDIDLTLINAAIKGNEERKNHMCERILNSIKDIKNPKIAVLGLAFKDGTDDCRESPAV
                     DIVFKLLEQKVKICAYDPKAMDLAKQILGDKIDYANSMYEAIKDADAIAILTEWKEFS
                     SLDLKKAYDLLNHKKIIDLRNLIDKNEAIKLGFEYQGVGR"
     gene            14497..15471
                     /gene="galE"
                     /locus_tag="ACHDOB_000654"
     CDS             14497..15471
                     /gene="galE"
                     /locus_tag="ACHDOB_000654"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HFN3325592.1"
                     /translation="MKNILVVGGAGYIGSHTLKHLLDNNYNCIVIDNLIYGHKQAIDK
                     RAKFIHADLLDTFSLTSVFKQEKIDALVHFAAFAYVGESVINPAKYYQNNVVGTINLL
                     NTMLENNVKDIVFSSTCATYGEPQYTPIDEKHPQNPINAYGRTKLMIEQVFADYEKAY
                     GLRHISLRYFNAAGASKDGLIGESHEPETHLIPLVLKAIKGEIPAINIFGNDYDTEDG
                     TCIRDYIHVEDLALAHRLALENLHKFSGCINLGTGIGTSVKEIISAAEIVSGKKCPIN
                     YAPRRAGDPARLYADNKKAKEILFWEAKYTDIKDIIKSAWDWENNREY"
     gene            15473..16591
                     /gene="glf"
                     /locus_tag="ACHDOB_000655"
     CDS             15473..16591
                     /gene="glf"
                     /locus_tag="ACHDOB_000655"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002912515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008767 - UDP-galactopyranose mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009273 - peptidoglycan-based cell wall
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HFN3325593.1"
                     /translation="MKKVKNLIVGCGLSGAILAERLASKGQEVLIVDKREHIGGNVYD
                     YKDQESNVTVHKYGPHVFHTSIKEVWEYLSRFTKWHYFMYRVKAFIDGKEVNIPFNLD
                     TLHKVFPEYLAKELEQKLISKFAFNSKIPILELKNANDKDLEFLAEYIYKKVFLGYTV
                     KQWGAKPEELDFSVSARVPVYISRDDRYFVDTYQAIPKDGYTKMIENIINHSLIEVQL
                     NTDFKDIKKDIEYERLFYTGAIDEFFDYKFGRLPYRSLNIVFETFDKEYMQSGPQINY
                     PENYDFTRSVEYKYYLDEKSNKTILSYEFPCEYEEGKNERYYPIPNDENQKLYERYLN
                     EAAKLNNVYFLGRLGDYKYYDMDKTVERVLKIVRSELQ"
     gene            16588..>17065
                     /locus_tag="ACHDOB_000656"
     CDS             16588..>17065
                     /locus_tag="ACHDOB_000656"
                     /inference="COORDINATES: protein motif:HMM:NF025751.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4422 domain-containing protein"
                     /protein_id="HFN3325594.1"
                     /translation="MKENEKKIKPSIKILVGYHKPATLIKDDIFTPIHLGKKLSVQSA
                     KDGKISYEDFEWMCENMIGDDTGDNISHLNRYLNELTGIYWAWKNYDKLGNPDYIGYE
                     HYRRHFIFKENIVLPPIGGLENYFHYFDNVSQSYLEIIDLNNFNNIELFDMVVPKPY"
BASE COUNT         6277 a         1975 c         2927 g         5886 t
ORIGIN      
        1 aaatatttta gaaattatat aagaaaaaat ttctctaatg cctttgtgag tgaatttcat
       61 cagggtttaa aaagaagttt ttcttatctt gataaagata ggaaaaaact ttatgatttt
      121 gaaaatatca aagaaattca aggacttctt atttgcccta aaaatgaaag tttgattgct
      181 agagcggtga aaatgaaagg tttgctttta agcacggcac aaagaaaaga gcttttaaag
      241 ggtgattgtg ttttaggtgg caaaatagca cttgtatata aaaacgaaca agctattgtt
      301 tttgagtatg aaacttgtca aaaattacct aaaaatttta aagaagagtg tagaatagct
      361 aaaattccaa ggtttttaag agcttattta tacaatcata aaatcgatat ttcaagcctt
      421 agcttttagt tttaaaattc tttgatagcc taaatgtgtg agaaaaatca caaaaaacac
      481 ttgcaaaaaa agtcctaaaa gtggtactga tgagagtaga taaaaacaaa gagtactaaa
      541 tttaaactct aaaggcgaaa aatcagaatg aaaattttta aaactttctt tgtctaaaat
      601 cgtgcttgca acatcaatca ttaaaagttt gtgaaagaga taataaaaag caagataata
      661 tacaaaaata ttgataaaag gtaaaaataa agccaaggtg caaagcaata aaatccctat
      721 aaattttata aatattttaa aaatttcaaa gatagttttt agggttgaaa cttcgtttgt
      781 attattataa tggtaatatt tttggttgat ttctttagcg ataaaaggag taagaaaaga
      841 agtgataaaa agggctaaaa aaaccgaagc aaaaacaaca ataaaacctg aaaataaaaa
      901 acttatgatg gtgattaaaa tttgtacaaa atgaagggta taaaaccacg cccaaaacga
      961 atcctctcca acgctaaata aagaattaaa ataatccagc aaggccgaaa agccaagtac
     1021 tcctaaaaaa agcatcagta caaggctaaa aattaaagga attaaggcaa attttaaaaa
     1081 tttaagactt aaaaaatctt tgattgcaag ttttaaaata tccaaattat gcctttttgt
     1141 agtattcttc tagtttttta taaatagtat caaaatcaag ctcttgttct aaaatttgag
     1201 ctaaaacttc attgtcttct ttgccattcc aagttttttt atagctacca tctttgtaac
     1261 catggttttg tctaaagata tttaaaacat ttttacctat gtaggtttta taaagaattt
     1321 caagattaag cccacattta atagctaggg taaaataggt tgaaagtaat tctccaagat
     1381 taaatccaaa accactgcat ttatggataa taagctctat atcatttaaa atgccataaa
     1441 tatcaccctc attaggatgc tcttcttctt tgcaaaaacc ttgaaacaca cttacagcat
     1501 taacttctgt agctatagct ttcaaatctt ttccattttt atcgcgatac tcttcaagca
     1561 aaagacttaa aataaaatgc caaatatcga caatctctat acgcacattt tcccaatttg
     1621 ttggacttga aatatttttc caatgtttcc atgtaaaaga gtctataagt tctgcacatt
     1681 ccatataaat acagcgtctc caactgatca gttttccttc tttggtgtag ccattttccc
     1741 aatttaagcc gtttgtttca tcgttgagtt tttgttggag tttgagcata ttttctaaaa
     1801 tttcgatatt tgtcatttaa aaactccttg ataattttta atattatatg atttaagcgt
     1861 aaagatttaa actatcatct gtcttatctt gattttcctt ggctttttct tgttgttttt
     1921 caagttgttt tttcatttgt tctaaaactt catcaagaag ttttttgcta tcttcaagca
     1981 tggaagcatt gatatcttta tcatctgttt gattttgttt tagtaaatca ctgagtttat
     2041 ttgtaaaatt attcataata gcattttgat ggttttcatc atttggtgtt ggtagaacat
     2101 ttgccatttg catagctgat tctataattt cttttggctt taactctccg actttagaat
     2161 ttgccaaaaa gtctttgatc ataggttcaa cttctttcat agcattttta atctcatcaa
     2221 gatcattttg cgtgagctta gagccttcaa aagtaaagct aaagccatac tgacgcttaa
     2281 gattaagagt tttaccttct tcattatttg tataacttac gctttgattg tcatacatag
     2341 ataaggctaa atgtttgcca ctttttgttg tataatccat cgaaaaactt tggtttttgc
     2401 tagcatcaat ttgcatttct tccccttata tttatagttt aaattaaaaa tcggttattt
     2461 ttaaaaatat tttagtataa tttttacaat atggatgaaa gaattttaga atttataaaa
     2521 aatgagcagc ttttatcttg ggctgtgatt gatgaaaaag gtgcttatac agctagtgct
     2581 ttttatgctt ttgatgagaa gaatttagct tttattatcg cttctcatga agatactaag
     2641 catataagat tagccagtga aaattcaagt atagcactta atatagccaa agaaagtaaa
     2701 atagcctttt taaaaggtgt gcaagctaag gccgagttta aaatggcaag taaggagcaa
     2761 atgaaaattt atttttctaa atttcccttt gctaaacttg ataaaagtgc aaaaatttat
     2821 gccttagagc ttttttggct taaatttact aacaatgctt taggacttag taaaaagctt
     2881 gagttttgta aaaaataaat ttttatgatt ttgtttaaaa aaatgagtta tgattatggt
     2941 ttatgtaaat tgttaggtat agaaaataaa tgttaaatgt aattcatgct ttatttttta
     3001 gagagttaaa aactagattt ggtgctaata ggcatttagg ttatctttgg gtagttggag
     3061 aaccaatgtc aataacactt gctatcacag caattgtcac tattataaga gaatatcatc
     3121 atcaagttat gcctgaagga atttctattt ttatgttttt aatttcaggt attatgcctt
     3181 attttatgtt tagaagtata gtaactcaac ttatgaatgg tactcaggca aatttggctc
     3241 tttttgctta taaacctgta aagcctatac atgtatttat tgctagaact ttgcttgagt
     3301 tttgtattta ttttgtgatt tttatcactg tgcttttttt tgtaggatgg ttttttagat
     3361 ttgatgtatt cccagttcat ttacttggag ttttattttg tattttttta cttatgtgtt
     3421 cagcttttgc tttgggggtt tgttttgcta ttatttggca ttttgtagag cctttaagaa
     3481 ctttattaac ttattttagc atagtgtttt attggacttc aggtgttata cttcctactt
     3541 ggctaactcc tcgtccttta cttgatatat tatattataa tcctttactt catatttttg
     3601 aacttttaag atttaatttt tttgagaatt atcctttgca agatgaatat agttattttt
     3661 atgctatatt ttggatttta cttgttttat ttataggact ttttgtctat tactataaca
     3721 gacaagcttt aacggcggta aaaaaagaat gataaagcta attaatctaa ctaaatctta
     3781 tcctttattt agcggtggaa gacattatgt ttttaaaaat tttacttttg aatttcctga
     3841 aaattgtagt ataggattga tggggggtaa tggtgcaggt aagtccactc tcatgagact
     3901 tttaagcggg gcagagcttc ctgatagtgg taaaataatt accaataaaa aattatcttg
     3961 gcctttaggt ttaaatggag cttttcaagg ttctttaact gctagagata atgctaaatt
     4021 tgtagctaga gtatatggtt ataaaggaca agagcttcaa gaaaaagtaa aattcgtaga
     4081 agattttgca gagcttggga aattttttga tgagcctatg aagacttatt cttcgggaat
     4141 gagtgctagg atagcttttg gacttagtat ggcctttgat tttgattatt atttaattga
     4201 tgaagctgga gctgttggag atcctgcttt tagggaaaaa agcgtgaaat tatataggga
     4261 aagattaagc aaatcaaaag tgattatggt atctcatgat gtagctgaaa ttaaagaatg
     4321 gtgtgataaa ataatttata tgaaaaatgg acaaattacg gtttatgatg atgtagatga
     4381 aggaatagct gcgtatcaag gaaaagctta atggaagaaa ataaaacttt attagaaaaa
     4441 attaaagatt taggtatatt tgattctttt aaaattgttt ggtttataat gatttttgtt
     4501 gtgatttatt atacattgat tgcagcacca agatatgtaa gcacgatgat tttagatgtt
     4561 agatcaacaa gtggagaaag tgctcaaaca agtggaattt tatctttact tagtaacact
     4621 tctacggcaa gtgaagattt aaattatcta aaaggctata tagaatcaag tgatatgcta
     4681 aagattttgg atgaaaaaat caaacttaaa agtctttatc aagaacaaca tatagatttg
     4741 ccttttaaaa tttgggattc aagttcgata gaatcttatc ttaaatacta ccaagcaaga
     4801 gttaaaattt attctgataa aacaacagga ttgttaaggg ttgaagtaga gggttttaca
     4861 cccaaatcag ctcatttgat tgctcaaact attatgcaag aaagtgaaaa gtttatcaat
     4921 gaaatttctc ataaagcagc tagagagcaa atggtttttg ctgaaaatga agtacaaaaa
     4981 tacaaagaac gatatcaaaa agcacaaaat gatttgattg cttttcaaaa taaatacgga
     5041 gtttttaacc ctttaaagca agctgaaacc aaagcgagtt tggttgcaca aattgaggct
     5101 aatttagctc aaaaagaagc taaactttta actttacaaa gttatatgaa tgatgcagca
     5161 cctgaagtag tagcacttaa agcagaaatt gaagcaatca aaaaacaact tttaagggaa
     5221 aaatctaaaa tttcagccaa caattcttct caaaagctta acgatttggc tgctaaattt
     5281 caggatttaa ctatagaatc tacttttgca caaaaagctt atgaggcagc tttaaaagct
     5341 tatgaaagcg ctagaataga agctttaagg aaaataaaac aacttgtcat catccaaagt
     5401 ccagatattc cagaaagcgc aaaatatcct gagagaattt atgatatttt aacagcgttt
     5461 attgtattat ctttgatttt tgggattgct aaatttatta aaatgataat agaggagcat
     5521 aagtattaaa atgaaaaaaa tattaatttt attttttagt tgtattttat gttttggagc
     5581 tgtggatgtt tcacaaatca tttcagcgga agatcaaggt tctactacaa ctagtataga
     5641 tcaaaattta agctcaaatt atgatatagc aaataaagaa aataatctta caaaaattca
     5701 tcaaatttta gtatttggtg ctcatctttt taatggaaat tttaaaaatt acaatcaaag
     5761 agtttataac ccagattata agatcgcagt tggtgatcaa atcagtctta aaatttgggg
     5821 agctgttgag ttttcacaag ttttagtagt ggattctcaa ggaaatattt ttatccctaa
     5881 agtaggagct gtaaatttac taggtgtgaa aaatagtgcc cttgtaagtg ttataaaagc
     5941 acatgttaat aaaatctata aaagtaatgt ttttgtttat gcagatatga atgcttatca
     6001 aaatgtcagt gtttttgtaa caggaagcgt taatgctcca ggactttatc aaggacttag
     6061 ttcggattca gtgatccagt atcttgataa agcaggaggt ataaatttag aatatggaag
     6121 ttttagagat attcaaattt tgcgcaataa tagtgtgata aaaaatatcg atttatatga
     6181 ttttttacta aaagggcaaa tggatctttt tccttttaga agcggagatg ttattttagt
     6241 aggaaatgtt caaaattacg cttttgttaa cggtgatgtg caaagacctt ttcgttttga
     6301 actttcaaat gatattaaaa ctttagctga cttagctaga gtatcaggtg ctaaacctat
     6361 tgtaactaat gccatcgtaa aaagttatgg tgaagatcat aaacttgatg tcaatgctta
     6421 taataaaatg caattttcaa aagttttgct tagaacggga gatgaggtag aatttcatcc
     6481 tgagtatgtt tctgaaaata taactataag cgtaaatggt gagcataatg gtttaaaaac
     6541 tttagttgtg ggtaaaggaa cgactttaga agatatttct aaactaatta aggctaatcc
     6601 acaatcaaac atgcaagctt tgcaagtatt tagaaaaggt gtagctagaa ctcaaaaaga
     6661 acttatcaat gctcagctta aagagcttga aactctagct ttaaccagca gttctgttac
     6721 agctcaaggt gcagctataa gagctcaaca agcaaaaacg attttagaat ttatccaaag
     6781 agctaagcaa gtgcaaccaa aaggtcaaat tgtcatcgat aatccaaagt cttatggctc
     6841 ggttatattg gaagatggtg atactattaa tgtgccaagt aagaataatc tcatcatagt
     6901 tcaaggcgag gtttctttac ctggggcttt tgtgtatgat aaaggaaaag atttaagata
     6961 ttatatcaat cttgcaggag gttatggaga aagagcggat acttcaaaag ttttggtgat
     7021 acgaagcaat ggaaaagctg aaaaatatca tagtggtata gatatgaaac caggtgattc
     7081 tgtgttggta ttgccaaaag tagatagtga gaatttgcaa attttttcaa tgttaactca
     7141 aattctttat caaattgcta tcgcaaccaa tgttgtgctt aatctttaag gtttaaatat
     7201 gaatactctt gaaatagcca aagaagtctt tgaaaaagaa gcacaagcta ttttggattt
     7261 gtctaaaaat ttagatgaaa atttcaatca agctataaat ttgatgttaa atactaaagg
     7321 gcgttgcata gtcagtggaa tgggtaaatc aggccatata ggcgctaaga tagcagctac
     7381 tttagcaagt acaggaacgc caagcttttt catccatcca ggagaggctt tgcatggaga
     7441 tcttggaatg ttaacccctg aagatgcttt aattgctatt tcaaattcag gagaaactga
     7501 agagatttta aaaatcattc cagctataaa aaagcgcaaa attccactta tagtaatgtg
     7561 tggtaaaaaa aattctaccc ttgtaaagca aggcgatata tttttaaata tagctgtgga
     7621 aaaggaagct tgtcctttgc agcttgctcc tatgtcttca acaacggcaa ctttagttat
     7681 gggagatgct ttagcagctg ctttgatgaa agcaagaaat ttcaagcctg atgattttgc
     7741 actttttcac ccagggggaa gtttgggacg taagctttta actaaagtaa aagatcttat
     7801 ggtttcaagc aatcttccta tagtgcatcc tgatactgaa tttaatgatc ttgttgatgt
     7861 gatgactagt ggaaagctag ggctttgtgt ggtgcttgaa aatgaaaaat tggttggtat
     7921 catcactgat ggagatttgc gtcgtgcttt aaaggcaagc gataagccaa gatttgattt
     7981 taaagctaaa gaaatcatga gcactaatcc taaagtagtc gatgctgatg ctatggcaag
     8041 tgaagcagaa gaaatcatgc taaaatataa aattaaagaa attatagtag ggaaagaaga
     8101 aaaagttgta ggtattatcc agctttatgc tataggaaat gtttaatggc tcttttatct
     8161 gttattatcc cttttggttt aagtaaagaa cgtccctata tagaagaaag ggttcttcag
     8221 aaagctaaat cttttcaaag tgatgagaat atagaattta tttttgttga aggatattca
     8281 tctaaaaatc acgagcttaa aaattttatc caaacaaatc atcatattta tcttaaagat
     8341 atgaatcaaa aagctttttc tcaaggaaga tgtaggaatt taggagcaag ttatgcgcat
     8401 tcaaatgttc ttttattttt ggatgtggat tgttatattt ctttagataa ttttgaaaaa
     8461 attttaaaac tagttcaaat taaaaatatt tctcaaaata tcaatgcttt ggtagtttta
     8521 cccgtagtgt atcttaataa agatgctaat gaaaaattaa aacaatacga tgagaaattt
     8581 tgggatattt tgatacaaga ggatttattt acagcaaaaa atacttgggt aaaatttttt
     8641 gccccaagtt ctacttcaag tattgtgata aataaacatc agtttttaag attaggtgga
     8701 aatgatgaaa attttattgg gcatggttat gaagattttg atctttttgc tagaatttta
     8761 aaagcttgtg tgagttttga aaaaatgcct actaatttaa gctatgatgc tagaaattgg
     8821 aattttttta actttaaagg ttttagatct tggttttcat tgcttggtca tgaggcttgt
     8881 ttttatggaa tttatatgta tcatttttat catgtagaac ccaatcaaaa tgcttatatg
     8941 caaaataaag ataagaatca tcagcttttt tataagcatt taaaaaatat caaaaaacat
     9001 gatttaaagc ctttgcaagt ttttaaagcc aaaggtgaaa aagttttaat gctttttaaa
     9061 gaccaaaatt atgattttaa ggatattagt gtttatgtgg gagaaaccat ttataaaaat
     9121 ataagtgatt tttttatagc taaagagtta aaatataaac ttttgttgga ttttttacaa
     9181 caagaaaaaa tcactaaaat atttttggat gcaagtataa aagaagaaat tgatggtata
     9241 gattattgtg atatttttta ttttcaaaaa ggaattttac ctcattcttg gttttttgca
     9301 aaaaatttag atttagatta taaacaagat ttaattttaa gcgagcaaaa actttatcaa
     9361 gtgaaagaat atttcttaac tttaaagaag gatgaaaaaa aagttatttt ggatttttta
     9421 agccaaaata atgatgataa gtgtgatttg tatgaaatgc tttattattt gattaacgaa
     9481 gtttatagtt ttgagcatga tgggattttt tatcaaatca ttattgataa agaaaaaatg
     9541 ctgatggcac aaaaacatga taaaagcttt tatcctttag gatcttttat ttataaacct
     9601 tatttgtatg agcttaagag tataagacct ttttcatttt tgatgaaaat tttaggttta
     9661 gagtatcttg gtgctatgat ttcacatact aaattttatc gtttggcaag aaaattgttt
     9721 tttaatccta aggggttttt tgaggatttg agagctaaaa agaatgcaaa catataaatg
     9781 tttagttaaa cctaaaattt ctgttattat cccttcttat aattcggcta aatatataaa
     9841 agaatgttta gacagtgtga tttttcaaag tttaaaagag attgaaattt tatgtataga
     9901 tgcatattca attgatggaa ctatagatat attaaaatca tataaaaagc aagatagtag
     9961 aattaaaatt attttttcaa aaaaaaagag tttgggttat caaattaatc taggattaaa
    10021 agaagccaaa ggagaatatt gcacaatagt tgaaagtgat gattatgtaa aaatagatat
    10081 gtgtgaaaaa ctttatagat tagcttgcaa tcaagattgc caagtagtta aatctgattt
    10141 tattggtttt gaagataagg agaaagaaag aatttttaaa aacctctcta tatgttatga
    10201 tcaagcttta tataataaaa aaactaattc gtatttaaat ccaagtatta ttataaattc
    10261 ttggaatatg aatcaatcta gtctttataa aatggatttt attaaaaaat acaatataag
    10321 agcaaatgaa acaaagggtg cttcttatca agatatagga ttatggtttc aaattttaag
    10381 tttggcttca agtatttatt tttgtcaaga ggggttttat ttttatagac aagataatga
    10441 aaatgcttcg gttaagagta aagataaaat atattgcgtc tgcgatgagt ttgagttttt
    10501 agataagttt tttgataaga atttagagct taaaagtaga ttgcaagatg ttttttattg
    10561 ttttaaattt aaaatatatt catggaattt aaagcgtatt gatgataagt ataagttaga
    10621 atttttatat aaattttcac aagatttttc acttatttat gataagttag ataaaacagt
    10681 gtttaaagtt agtgaaatat ctgaaatttc ttgcattgtt caagatccta gtaaatacta
    10741 taaaaaatat aatagtgttt tttatagtat aaaaaaaaag atttttagaa taaaaagaaa
    10801 atattttagg taaaagatga ataaaacagt aggcgtagtt atcccaatct ataatgtaga
    10861 aaaatactta aaagaatgtt tagatagtgt tgttaatcaa acttataaaa atttacaagt
    10921 tgtacttgta aatgatggta gcactgatga aaactcattt aatatagcta aagaatacac
    10981 tttaaaagat gaaagattta tactttttga taaaaaaaat ggtggtcata gttctgctaa
    11041 aaatgtcggc atagagtatt ttagtggaga atatatactt aaaaataaaa ctcaaatttt
    11101 agaaaaaaat tctttaatag aatttaatat agaaggtaat aatccccatg aaatttatac
    11161 agtgtataaa agttatgaag cttttcatac tactaaagat ttttatccta gtatagacta
    11221 tattatcttt ttagattctg atgattattg ggaacttgat tgcatagaag agtgtgtaaa
    11281 aagaatgaat gatgttgatg ttctttggtt tgattataag tttttaaata aaaataaagc
    11341 aactcaaatg gaaatttata attacacaaa agaacaaatc attactcctt tgcaatggtt
    11401 aaaaaggact agagaaatag gtaattattt attttggtat gcttggcaag gaatgattga
    11461 ctttactttt ttgcaaaaaa ttaatattaa atttatcaat cagatcatcc atgaagatca
    11521 tcattttggt atagcgcttt tttctatgac tgataatata tatatatatc ctgagaaaaa
    11581 gtatatatat cgtttcagag aaagcagtgt aagcaatcaa aaacaatata gcataaatac
    11641 taactcttat ttgtatactt tatacataga atttgataaa aatacctatg aattaaaaag
    11701 gtatcaaatg tctatgaatt ggatttttac ttgtttggaa ttgataaaag ttttaaaata
    11761 caattcaaat aatgcaatat caattcttgt tgaacaaacc tttttaccta ctttgcttga
    11821 tagaactttg attatttttt ttatagataa agatccattg ttgcttaaaa ataaactgca
    11881 agaattaaaa gattatttta aaaaatttca tttaagtgga gcagaatgtc ttaaatatca
    11941 attgtcttat cgtttagggc aatttgtttt atctaactat agaagtttaa gaggtttgat
    12001 aaaaattgtt ttaaatgcta aaaaaatgat actaaatatt caaaaagaac aagagttgtt
    12061 tcaagcaaca ataaaaaatt acccttttat tgttttttct tcttctagtg aagatctaga
    12121 aagtagaaaa atcaaaaaac attattctta tcgtttaggg cgatttttaa aaattatttt
    12181 aatataagct agtttgaatt ataataagtt ttatagaaat taagaaagta tttataatga
    12241 aggttatttt aatcactggg ggaacgggat ttttaggttc taatttatgt aaaagattgc
    12301 ttagtgaagg caataaaatt atttgtgtag ataataacta tacaggtaga atggaaaata
    12361 tcaaagaact tttagaaaat gaaaatttta cttttataga gcatgatatt tgcaagccat
    12421 taaaaatcac acaaaagctt gatcaaattt ataattttgc ttgcccagct tctccacctg
    12481 cttatcaagg aaaacacgcc ataaaaacaa caaaaacaag tgtgtatggc gctataaata
    12541 tgcttgaact tgcaaaagag cataatgcaa cgattttaca agcttcaact tcagaggttt
    12601 atggagatcc actcgttcat ccacaaaacg aagaatacag aggcaatgta aatcctatag
    12661 gaattcgtgc ttgttatgat gagggaaaaa gatgtgctga aagcttattt tttgattatc
    12721 atagacacga aggtgtggat attaaaataa taagaatttt taatacctat ggagaaaaca
    12781 tggattcaaa cgatggtagg gttgtaagta attttatatg ccaagcttta agtggaaaag
    12841 atattacaat ttatggagat ggttcgcaaa cacgttcttt ttgttatgtg gatgatttaa
    12901 ttgatattat tattaaagtg atgaattctt caaaagattt tcaaggacct ataaatactg
    12961 gcaatcctga tgaatttacc ataaaagaat tagcgcaaaa ggttatagaa aaaacaggtt
    13021 ctaaatcaaa gattatctat aaagatttgc cattagatga tccaactcaa agaagacctg
    13081 atatttcttt agctaaagct aaatttaact gggagccaaa gataaattta gatgaaggtt
    13141 tagaaaaaac tataaaatat tttaaagaaa aaattacaga atttaaagga tagggtaata
    13201 catgaaaata ggaatcatag gaacaggtta tgttggactt ccaacaggtg ttggactagc
    13261 agaacttggc aatgatgtta tttgtataga tagagaaaaa tcaaaaattg atgccttaaa
    13321 tagcggaatt ttaacaattt atgaggataa tcttgaagaa ctttttcata aaaatataaa
    13381 agaaggtcgt ttaaaattta caacttctat gcaagaaggt attaaagatg cagatttggt
    13441 aattatagca gtaggaactc caccacaccc agttacaaaa gaagcagata tgaagtatat
    13501 tcatgcagct gcaactgaat tagcagatta tttaacaaga tatacggtaa ttgctacaaa
    13561 atccactgtt cctgttggca cgggtgatga tatagaaagt ttaattagta ggaaaaatcc
    13621 aaatgcggaa tttgatgttc tttctttacc tgaattttta agagaaggtt ttgcagtata
    13681 tgattttttc aatccagata gaattatagt aggaacaaat tcacaaagag caaaagcggt
    13741 gatagaaaaa ctttatgagc cttttaaagg aaaaagcgag ttgctttttg taagtcgccg
    13801 ttcttcagaa actattaaat acgcctcaaa tgcatttttg gctattaaaa ttcattatat
    13861 taatgaaatg gcaaattttt gtgaaaaagc tggagctgat attttagaag ttgctaaagg
    13921 tatgggtctt gatactagga taggaaaacg ctttttaaat cctgggcctg gatatggagg
    13981 ttcgtgtttt ccaaaagata ctttagctat ggcttttatg ggtaagcaaa atgatatcga
    14041 tttaacttta atcaatgcag ctatcaaggg aaatgaagag cgtaaaaacc atatgtgcga
    14101 aagaatttta aatagtatta aggatatcaa aaatccaaaa atagccgtac ttggactcgc
    14161 ttttaaagat ggcactgatg attgtagaga aagtcccgct gtagatattg tttttaagct
    14221 tttggaacaa aaagttaaaa tttgtgctta tgatccaaag gctatggatt tagctaagca
    14281 aattttagga gataaaattg attatgctaa ctccatgtat gaagctataa aagatgctga
    14341 tgcgatagct atactaacag aatggaaaga attttcaagc cttgatttaa aaaaggctta
    14401 cgatttgtta aaccataaaa aaattattga tttaagaaat ttgattgata aaaatgaagc
    14461 tataaagcta ggttttgaat atcaaggtgt aggtagatga aaaatatttt agttgtaggt
    14521 ggtgcaggat atataggctc acatacctta aaacatttat tagataataa ttacaattgt
    14581 attgtcatag ataatcttat ctatggacac aaacaagcta tagataaaag agctaaattt
    14641 attcatgcag atttattaga tactttttct ttaactagtg ttttcaagca agaaaaaata
    14701 gatgctctag tgcattttgc agcttttgct tatgtaggag aaagcgttat aaatcctgca
    14761 aaatattatc aaaataatgt agtgggaact ataaatcttt taaatacaat gcttgaaaat
    14821 aatgttaagg atatagtatt ttcaagcact tgtgcaactt acggagaacc acaatacact
    14881 ccaattgatg aaaaacatcc tcaaaatcct attaacgctt atggaaggac taagcttatg
    14941 atagagcaag tttttgcaga ttatgaaaaa gcttatggtt taaggcatat ttctttaaga
    15001 tattttaatg ctgcaggtgc aagcaaggat ggacttatcg gagaaagcca cgaacctgaa
    15061 actcatttaa ttcctttagt tttaaaggct ataaaaggag aaattcctgc tataaatatt
    15121 tttggaaatg attatgatac cgaagatgga acttgtataa gagattatat tcatgtagaa
    15181 gatttagcac tagctcatcg tttagcttta gaaaatttac ataaattcag tggttgtata
    15241 aatcttggta cgggaatagg tacaagtgta aaagaaatca tcagtgcagc tgaaattgta
    15301 agtggcaaaa agtgccctat aaattacgca ccaagaaggg ctggagatcc tgcaagatta
    15361 tacgcagata ataaaaaagc aaaagaaatc ttattttggg aagcaaaata tactgatatt
    15421 aaagatataa ttaaaagtgc ttgggattgg gagaataata gagagtatta agatgaaaaa
    15481 ggtaaaaaat ttaatcgtag gttgtgggct tagcggggct attttagctg agcgtttagc
    15541 tagtaaagga caagaggttt taatcgtaga taaaagagag catattggtg gaaatgttta
    15601 tgattataaa gatcaagaga gtaatgtaac tgtacataaa tatgggcctc atgtttttca
    15661 tactagcata aaagaagtat gggagtattt aagtcgtttt acaaaatggc attattttat
    15721 gtatagagta aaagctttta tagatggtaa agaggtaaat atcccattta atcttgatac
    15781 tttacataaa gtttttccag aatatttagc caaagaactt gagcaaaaat taataagtaa
    15841 atttgctttt aattctaaaa ttcctatttt agaattaaaa aatgcaaatg ataaagattt
    15901 agaattttta gctgagtata tttataaaaa agttttttta ggttatacag taaagcaatg
    15961 gggtgcaaaa cccgaagaac ttgatttttc agttagcgca agggttcctg tatatataag
    16021 tcgtgacgat agatattttg tagatactta tcaagctata ccaaaagatg gttatacaaa
    16081 aatgattgaa aatataatca atcattcttt gatagaagta caattaaata ctgattttaa
    16141 agacataaaa aaagatatag aatatgaaag attgttttat acaggagcga ttgatgaatt
    16201 ttttgattat aaatttggaa gattgcctta tagaagttta aatatagtat ttgaaacttt
    16261 tgataaagag tatatgcaat caggtcctca gataaactat cctgaaaatt atgattttac
    16321 aagaagtgtt gagtataaat attatcttga tgaaaaatct aacaaaacca tactttctta
    16381 tgaatttcct tgtgaatacg aagaaggtaa gaacgaaaga tactatccta tacctaacga
    16441 tgaaaatcaa aaactgtatg agagatattt aaatgaagct gctaagctta acaatgtgta
    16501 ttttttaggt aggcttggcg attataaata ttatgatatg gataaaactg tggagagagt
    16561 attgaagatt gtaaggagtg agttgcaatg aaagaaaatg aaaagaagat aaaaccaagt
    16621 attaaaatac ttgtaggtta tcacaaacca gcaactttaa ttaaagatga tatatttaca
    16681 cctattcatt tgggaaaaaa attatcagtt caaagtgcta aagatggaaa aatatcatat
    16741 gaagattttg aatggatgtg tgaaaatatg ataggagatg acactgggga taacatatct
    16801 catttaaatc gctatttaaa tgaactaacg ggaatttatt gggcttggaa aaattatgat
    16861 aaattaggta atcctgatta tataggatat gagcattata gaagacattt tatttttaag
    16921 gagaatatcg ttttacctcc tataggtggt ttggaaaatt atttccacta ttttgataat
    16981 gtcagtcaaa gttatttgga aattattgat ttaaataatt ttaacaatat agaacttttt
    17041 gatatggttg tgccaaagcc ttatt
//
LOCUS       DAZAND010000025        16882 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.025, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000025 DAZAND010000000
VERSION     DAZAND010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16882
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.025"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..622
                     /gene="lnt"
                     /locus_tag="ACHDOB_000657"
     CDS             <1..622
                     /gene="lnt"
                     /locus_tag="ACHDOB_000657"
                     /EC_number="2.3.1.269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HFN3325595.1"
                     /translation="ILIQDILQAINEKKELVILPETAFAFDLKNTKYELILKELSYKI
                     TIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKNIEE
                     FSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQQLL
                     MKFYASKYGVSVYHATNGKENIVILPKKLLSKDWKNLSKEIFNDKK"
     gene            complement(859..2055)
                     /gene="metK"
                     /locus_tag="ACHDOB_000658"
     CDS             complement(859..2055)
                     /gene="metK"
                     /locus_tag="ACHDOB_000658"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HFN3325596.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCEPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            2195..3418
                     /gene="sstT"
                     /locus_tag="ACHDOB_000659"
     CDS             2195..3418
                     /gene="sstT"
                     /locus_tag="ACHDOB_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0015826 - threonine transport [Evidence
                     IEA];
                     GO_process: GO:0032329 - serine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HFN3325597.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIVLGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFLASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSEIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFIVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVTTMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            3428..4315
                     /gene="pyrB"
                     /locus_tag="ACHDOB_000660"
     CDS             3428..4315
                     /gene="pyrB"
                     /locus_tag="ACHDOB_000660"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HFN3325598.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLKGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHIHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGDVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAALKKLILENEG"
     gene            4319..6040
                     /locus_tag="ACHDOB_000661"
     CDS             4319..6040
                     /locus_tag="ACHDOB_000661"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HFN3325599.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYALNAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSQEFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDEDRKTRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFNQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTDKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            6034..6471
                     /locus_tag="ACHDOB_000662"
     CDS             6034..6471
                     /locus_tag="ACHDOB_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325600.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDVKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQIENNILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            6468..8543
                     /locus_tag="ACHDOB_000663"
     CDS             6468..8543
                     /locus_tag="ACHDOB_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HFN3325601.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIKYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAVLFRVNALSRAIEEAFMKEKISYKLLSGMRFYERLEIKD
                     LISYLRLILNPNDDLSFRRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPEASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            8540..9358
                     /gene="truB"
                     /locus_tag="ACHDOB_000664"
     CDS             8540..9358
                     /gene="truB"
                     /locus_tag="ACHDOB_000664"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HFN3325602.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIKNIKEFDLANLQQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELKFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            9352..9579
                     /gene="csrA"
                     /locus_tag="ACHDOB_000665"
     CDS             9352..9579
                     /gene="csrA"
                     /locus_tag="ACHDOB_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006109 - regulation of carbohydrate
                     metabolic process [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HFN3325603.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            9576..10343
                     /gene="ispE"
                     /locus_tag="ACHDOB_000666"
     CDS             9576..10343
                     /gene="ispE"
                     /locus_tag="ACHDOB_000666"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HFN3325604.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDLFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSKRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLMNETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSGCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            10340..10792
                     /gene="smpB"
                     /locus_tag="ACHDOB_000667"
     CDS             10340..10792
                     /gene="smpB"
                     /locus_tag="ACHDOB_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HFN3325605.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEARAAMKNYK"
     gene            10803..11405
                     /locus_tag="ACHDOB_000668"
     CDS             10803..11405
                     /locus_tag="ACHDOB_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HFN3325606.1"
                     /translation="MKKILTLFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNGGSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNAPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            11405..11695
                     /gene="clpS"
                     /locus_tag="ACHDOB_000669"
     CDS             11405..11695
                     /gene="clpS"
                     /locus_tag="ACHDOB_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HFN3325607.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVIDAAKLANFPLQAKVEEE"
     gene            11692..13821
                     /gene="clpA"
                     /locus_tag="ACHDOB_000670"
     CDS             11692..13821
                     /gene="clpA"
                     /locus_tag="ACHDOB_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN3325608.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSIDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLTKIQELQNHENIQNLSNHTSNLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLAKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTEFCKALAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSVDDKVKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            13796..14443
                     /gene="aat"
                     /locus_tag="ACHDOB_000671"
     CDS             13796..14443
                     /gene="aat"
                     /locus_tag="ACHDOB_000671"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HFN3325609.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(14466..15755)
                     /gene="cetZ"
                     /locus_tag="ACHDOB_000672"
     CDS             complement(14466..15755)
                     /gene="cetZ"
                     /locus_tag="ACHDOB_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HFN3325610.1"
                     /translation="MFGAKKNNTEIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGHVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLRLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(15836..16462)
                     /locus_tag="ACHDOB_000673"
     CDS             complement(15836..16462)
                     /locus_tag="ACHDOB_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HFN3325611.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIAAMGFKMIIVGLKDIFNL"
     gene            complement(16477..16836)
                     /locus_tag="ACHDOB_000674"
     CDS             complement(16477..16836)
                     /locus_tag="ACHDOB_000674"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HFN3325612.1"
                     /translation="MKELNEEEKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLY
                     KSEDKFKSGCGWPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKN
                     VRHCVNSISLEFVKTKD"
BASE COUNT         6350 a         2558 c         2451 g         5523 t
ORIGIN      
        1 tatcttaatt caagatatac ttcaagctat aaatgaaaaa aaagaacttg taatcttgcc
       61 tgaaaccgct tttgcttttg atttaaaaaa taccaaatac gagcttatac ttaaagaatt
      121 atcttataaa atcaccatta ttacaggagc atttcatgtt gaaaaagagc atacttataa
      181 tagcacttat atctttaaaa aaggcaatgt ctatatttta aataagcatt ttttagttcc
      241 ctttggtgaa gaaattccat tttttaaaga cttaacaaaa aaatattttc ttaaaaatat
      301 tgaagaattt tccaaaggtc ctatacaaag caaatataaa ttagataatc aaattatcac
      361 aaatgcaatt tgttatgaag ctaccaaaga acaaaactat caaaattcac aaattattat
      421 agccctaagc aacaatgctt ggtttaataa tagcagcgaa tacaaactcc agcaactctt
      481 aatgaaattt tatgcaagta aatatggggt tagtgtttat catgctacaa atggcaaaga
      541 gaatatagtt atactcccta aaaagctttt aagtaaagat tggaaaaatt tatccaaaga
      601 aatatttaat gataaaaaat aatattaaaa ttttaatttt aaagtaattt aagttatttt
      661 atattataat tctgtcaaac aatattttga cttagagggg tttttacccc aaaagctaaa
      721 ttaatttagc ttccttccta acttttatat ttatgaggga tattgaaaaa tatccctcta
      781 agtcaaaaat taatataacc tcattaattc tttataatta tacaagcctt atttaagctt
      841 gtataaattg ttaatttttt aaagtagctt tttaaactgt tctagagcat caagtttttc
      901 ccaaggatag tccttttgtc ctacttgccc acgagctgct acatccgcat aaagaaaagt
      961 ttctttactt ggtttatcca gatgaaattt atcacgaatc caatttggtg ttaaagagaa
     1021 attttgcata acaaaatcac ttaaaacatc gtcatttaca ctagtatttg tgcccataca
     1081 atccacgctt accgaagtag gttttgcaac acctatagca tagctaagtt gaacaataca
     1141 ttttttagca agccctgctg caactatgtt tttagctagc catctacctg cataaagtcc
     1201 acttctatca accttagtat aatctttgct cgattgtgcg ccaccaccta ttggagaata
     1261 acctccaaaa ctatctacta taagctttct tcctgttaaa ccactatcat gcaaagaaga
     1321 atgattaaca tatttaccgg ttggattaat taaaattcta gttttattag gatcaaaaag
     1381 ttcttttggt aaattactat ctaagataag tttcatcacc aaagatctta aatcttctat
     1441 tttcatactt tcaacacaag gtgcagaaac tactatagta tggatacttt gcggttcgca
     1501 attttcaaaa ttcgccttag taccataatc aatagttact tgagttttaa tatctactcc
     1561 aagttcatgt ggatttgctt ttgcataagc ataaactcta tcgcatagca ttcttgcata
     1621 actaatagct gctggcatgt attcttcagc ttcgcaactt gcaaaaccaa acataatacc
     1681 ttgatcacct gctcctgttt cgccatcttc ttgatcgaca ccttgattga tatcagggct
     1741 ttgttcattt aaaaacacca taacatcaac ttcatcagga tgcaaacact gctctttact
     1801 aaaatgccct gctccgtcat aaccaatgtt ttttaaaaca tctttaacta aattatcgta
     1861 atcagcttta ctaagcttgt gatttgactt aacttcgcct cctatcacaa ccttatttcc
     1921 tgcgacaaaa acctcactcg ccacccttga atttttgtca tttttcaaga gtatatccac
     1981 tatcgtatca gcgattatat cagcgcactt gtctggatga cctgcactta cgacttctga
     2041 agtgaataga tacataaaaa gtcctttcat ttaaaatgaa ccacaattgt atccaaataa
     2101 acttatcaaa gcttgataaa ttaaaaattt actaaaatta agcaaaagtt agttaaaatc
     2161 aacttctgat ataaaaaata tttaaaaggt ttttatgttt tctaaaatca ttcaaagcta
     2221 cgctaaaggc aacctcatag ttcaaatttg tataggtata gtactaggaa tactcatagg
     2281 cattagctct aaagaaatat ctgaaattgc aaatttactc ggaatacttt ttacaagtgc
     2341 cttaaaagct atcgctccta tgcttgtttt tattttaatt ttaacctcaa tttgcactaa
     2401 agatttttct caaagtggtg ctaagatcaa aaatattatt attttgtata tagtaggcac
     2461 ctttcttgct tcagcttgtg cggttcttgc taattttttc ttccctgtaa agcttgtttt
     2521 agatggagtt caaaccgcta caaactcatc tccaacccac atgagtgaga ttttcaaaga
     2581 tcttttattt aaaattgtcg ataatcctat aaatgctcta tcaagtggaa attatttagg
     2641 aattttaact tgggcaatag ccggaggtat agcattaaaa cactgttcta acgaagcaaa
     2701 acaagttttt atagatatca atgaaggggt tttaaaaatt gttaaattta tagtaaaact
     2761 tgctcctttt ggaatttttg gacttgtggc taattctgta gcacaaacag gagcgcaagg
     2821 tttactaagt tatgtaaaac ttttaatttt acttgtaact actatgcttt ttgttacttt
     2881 tgttattaat gccttaatag tcttttttta tacaagaaaa aatccttttc ctttgatttt
     2941 tatctgctta aggcacagtg cattttttgc tttttttaca agaagttcgg cagcaaatat
     3001 tcctgtaaat atggcacttt gtgccaaact tggcatagat aaagaatttt atggcatttc
     3061 tataccttta ggagctacta tcaacatggc aggagcggca gttactatag ctattttaag
     3121 ccttactgca gccaataccg ttggtataga aatcagtctt ttacaagcct ttttattaag
     3181 cattattgct acctttgcag cttgtggggc tagcggagtt gcgggcggat ctttactgct
     3241 tatacctttg gcttgttctt tatttaatat agactatgat attgctatga aggtagttgc
     3301 cataggtttt attatagggg ttattcaaga tagtgttgaa actgctttaa atagttctac
     3361 agatgttctt tttacagcaa tttgttctaa aaatgaatta aattacaata tcaaataagg
     3421 taaaaacatg cgtcatctca tcactacaaa agattttaat aaagtcgaaa ttatggagct
     3481 ttttaaagaa gcaagtgatt tcttagatga aaaacctaga acttttctta aaggaaaaag
     3541 tatcacgaca attttttttg aaaactctac acgcaccctt tcatcttttg aaagcgctgc
     3601 aagaagatta ggcgctaggg ttttacgcct tgatgtttca agatcaagct ctagcaaagg
     3661 agaaactctt tatgatactg ctgctaattt agatgccatg agtcctaatg ctattgttgt
     3721 aagacacgca aactcaggag ttcccttgat attagcaaag catatacatt gtccagttgt
     3781 taatggagga gatggaaaac acgcccatcc tactcaagct ttgctagatt tatttactat
     3841 ttataatcat tttcaaggtg atgtcgaagg taagaaaatt tgcatcgtag gtgatattaa
     3901 aaattcccgc gttgcagcgt ctaatataga acttttaagc agatttaatc ttgatattac
     3961 cctagtagct ccaccgcatt ttatgcctaa tacccatctt aaaaaacatt ataagcttga
     4021 tgagaatatc atagcaaatt cagatattat catgagtctt agaacacaaa cagaaagaca
     4081 taataaaacc gtttacgctt cacttaaaga ctatgcaaat gatttttgta ttcaaaaaag
     4141 cttagtaaaa gataaaaagc ttattttact acatccaggc cctgtaaatc gcaatattga
     4201 cataagcgat gaaatgatga gcgatgaaag aactttagtt ttaaaacaag ttaaaaatgg
     4261 agtggccatt agaatggctg ctcttaaaaa actcatatta gaaaatgaag gataaaaaat
     4321 gttagaatgg gatttaagtg ctttattcca cgataaagaa gcattacaaa attttacaca
     4381 agatcaaatc caacaaagtt taaatttcaa aaaaaactat gaaaataaac tttatgcatt
     4441 aaatgctaat gagtttttac aagctttaaa agattatgaa aatttaaatc aagcccttgg
     4501 caaaatcatg acttatgctt atttactttt tgctaaaaac actcaaaatg gttcttttta
     4561 tgcacaatac gaagaagaat gcaaaaaaat agaagaaaat ttactctttt tcgagcttga
     4621 attttgcgag ttagctcctg agaaaagtca agaatttaca actttttgca aagattatga
     4681 tttttatctt tctaatttat tgcaaaacaa acgctataat cttagcaaaa acgaagaacg
     4741 cattatgctc tatctttcaa atacaggtgc aaatgctttt agtagacttt ttgatgaaag
     4801 tatgagtgct ttaaagatcc cttttgaagg taaaaaactt agcgaagaag aaattctaag
     4861 caaaatgtat gatgaagata gaaaaacacg caaaaaagct gctaaaaaat tcagtaaagt
     4921 tttgcaaaaa aatagcagac ttttaagttt tattatcaat atgataaaaa cagaaagaaa
     4981 aaatataagc ttattaagag gttatgaaaa tgctgaaatt tcaagacata tcagtaatca
     5041 aatttcacaa aaaagcgttg attctttgat agcaagcgca caaaaacatt ttaacttagt
     5101 atcgcaattt tacaaaagaa aaaaacaaat tttaggctat gatgagctta aagactacga
     5161 cagatatgca cccataggaa aagaagcaag ttttgatttt aaaacaagta aaaatattgt
     5221 tttagaggca tttcaagctt tttctccgca attttatgat atagcaaaaa atgcttttaa
     5281 tcaaggctgg attgatgttt atccacaaga aaataaacaa gggggtgctt tttcacattc
     5341 tgcaacttct gatgcgcatc cttttgtttt attaaactac accgataaaa ggcgtgatct
     5401 ttttacactt gcacatgaat taggacatac tatccatcaa aaactttctt acaatgtaag
     5461 ctacttaaat caaaacacac ctttaaccac cgcagaaaca gcttcagttt ttgctgaaat
     5521 gctggtattt gattttatta aagataagtt aaaaaaagaa gaactcctat ctttatatgc
     5581 aaataaaatc gaagatattt ttgcaacttt ttatagacaa attaatttta cttgttttga
     5641 aagacgctta catgctcaag aaaatgaact tagcaccgaa gaaatcaata aaatttggat
     5701 ggaagaatct caaaagatgt ttcaagacag cgtaaaactt acaaaaaatt atgcttcttg
     5761 gtggagttat attcctcatt ttatccattc tcctttttac tgctatgctt atgcttatgc
     5821 acaactttta gttttagctc tttatggact ttacaaaagt aaaaaatgtg aaaattttaa
     5881 agaactttat atcaaaatgc tttctttagg tggaagcgtg agtccaaaag aactagtagg
     5941 aatgtttggc tttgatatag aagatgaaaa tttttgggaa ataggcataa aagaaattca
     6001 aaaactcatc aatgaattta tggagttaca atcatgctag aaacaatctt aaaaaatgaa
     6061 aattttatcc ataccatgca aaagcattgt tatgaagtta tttcacacct tatagaagaa
     6121 aatatagaat tttccatagt tgcaaataca aatttcatag attttaaccc tgaacttccc
     6181 aaagagcttg atgttaaaca aaatccttat gctctttttg ctcttggagg atacaccttt
     6241 gaatccatac aactaaataa agatttcatt caatttcacg caggttttgg aaatgatgat
     6301 tttgatagtt ttgtaaaggt tgatttagga gctatcacgc aaattcaaat agaaaataac
     6361 attttatttg ttaattttag cctttataaa cgcgaagata gtaaaaattt acaaaaatct
     6421 aaaaatatat ttttaaataa tccaaaaaat aaagatattt tcaaaaaatg aatctatttg
     6481 aagatttaaa tgatagtcaa aaacaggcag taagccacat tgatggagct atgcttatcc
     6541 tagcgggtgc aggtagtgga aaaaccaaaa ctattaccac tcgtcttgct tatcttatcg
     6601 gtgaagtagg catcccctcg cataacactc ttactcttac ttttacaaat aaagcagcta
     6661 gtgttatgcg tcatagagca ttaaattttc tacaaggcaa tcacaatccc ttgctttgca
     6721 cctttcataa atttggactt ttatttttaa aactccattt tgaaagattg gagcgtaaaa
     6781 atagttttat tgttatcgat acagatgata caaaaaaaat aattaaagac ttaatccatg
     6841 ataaaaacaa agataatgtc tatgatatta tcaaatacat atcttattgc aaaaatgaag
     6901 gcaaaagagt aagcaatgtc tttgaagatt taaatttact aaaagaacat aattttgaaa
     6961 aatatcaaaa tgaatacaaa tttgccaact attaccgtgc ttatgaagaa tacttattaa
     7021 agcaaaattt tgtagatttt gatgatcttt tattgctaag caatctcatt ttagaaaatg
     7081 atataaattt tgccaaagaa caaagcttac tttataatta cattacagtt gatgagtatc
     7141 aagatactaa taccttgcaa tataaaattc taaaaaatct atgttgtatg catgaaaata
     7201 tcacagttgt tggtgatgat gatcaaagta tttatagttg gcgtggagca aaaattgaaa
     7261 atattttaaa ttttcaaaac gattttaaaa atgttaaact tgtaaaactt gaacaaaact
     7321 atcgttcagt agggactatt ttacaagcag caaataatct catatctcac aatgagcaac
     7381 gacttggaaa aactttaatc tgcactaaag atactgggga aaatattaaa atattaaaaa
     7441 acgaaaacga aaaagatgaa ggtttatata tcgctcaaga agtgaaaaaa ttgctaaatt
     7501 ctggagtaga agctaaagag atcgccgttt tatttcgagt taatgcacta tcaagagcaa
     7561 tagaagaagc atttatgaag gaaaaaattt cttataaact gcttagcggt atgcgttttt
     7621 atgagagatt agaaataaaa gatttaatct cgtatcttag acttatctta aatccaaatg
     7681 atgatttgtc gtttaggcgt attattaatc gccctaaaag atccatagga gaaaaagccc
     7741 taaaaaattt agaagaatat gcaaaaaaac gtcaaatttc actttttgat gccttatgtg
     7801 aaagcgatgg cggtgtagga attttaacaa caaaaaaagc acaaaatgaa gcaaatattt
     7861 ttatacaaaa tattcacact ctaaaaagct acgataatgc aaaaaaagtt tttgacaata
     7921 tagaagaatt atttaaaatc aaagattatt tttcagagca agatgatgga gatgaaagaa
     7981 tcagaaatct tgatgagttt tatgctaatc taagagaaaa actcaaagaa gatcccgaag
     8041 cttctttaga agatctactt agtgaaattt ctttattaag tgatcaagat aatttagatg
     8101 aagaatgtgt ttgcttgatg agtattcatg ctagcaaagg tttggaattt gattatgttt
     8161 ttataatagg ctttgatgaa ggattttttc ctttaaatag cgaagaaaat ctcgaagaag
     8221 aacgccgtct tgcttatgtt gccatcactc gcgccaagaa atttctcaca ataagtgttg
     8281 caaattctcg tttttatcat ggttcaagag caaatatcaa tcctagtcgc ttcttagaag
     8341 aaagtaaatt aatcaatgaa aaatcaaaaa atcaaaatat acaaaaaact agtttttgca
     8401 aaggagatct agttaaacat aaaatttttg gcattggcag ggttgttgaa gttaataaaa
     8461 gcggaaaaga ggaaaagctt aatattaatt ttggtggtat aatgcgtgta atcatggcaa
     8521 gctttgtgga aaaagcagta tgaataagat ctttgcagcc tttaaaccaa gaggtttgag
     8581 ttctaatgcc tttttaagta ctttaaagaa aaaatataaa aataaaaaag caggatattc
     8641 tggcactctt gatcctttcg ccaaaggggt tttaatcgtt gcgtttggac aatacacaaa
     8701 acttttccga tttttaaaaa aaactccaaa aacctataaa gctactttat ggcttggagt
     8761 ttactcctta agtcttgatg atcaaaatat aaaagaaatt aaaaatataa aagaatttga
     8821 tcttgcaaat ttacaacaaa tcattgatca aatgcaagga attatctcct atacaccgcc
     8881 gcaatttagc gccaaaagaa tcaatggaac tcgcgcctat gaacttgcaa aaaaaggtat
     8941 agaagcaaat ttaaaacctt gccaaatgga agtatttgat tgcaagattt taagctataa
     9001 tcatcctttt ttaaatatcg aaatcacagt cagtgaaggt gcttatataa gatcttattg
     9061 cgaacttttt gctagaaaac taggtattaa tgcgacttta agctctttag agcgcattaa
     9121 agaaggcaaa tttgtttata ataatgagaa aagcttaaat gtgttaaaat acattaacct
     9181 aaagccaaat tttatcaagg atttaaataa actcgaaaat ggtgctaaaa tttttgtcga
     9241 agaattaaaa tttcatgatg aaggagatta ttatattgaa acagaaaaat attttagcat
     9301 aattaatatt aaagaaaata cagtaaaata tcttctaaat aaggttgaaa aatgttaata
     9361 ttatcaagaa aagaaaatga aagtataatt atcggagaag gtatagaaat caaagtcgtt
     9421 caaacaggga aaggatatgc caaaataggc atagaagctc caaaatccct tatgatactt
     9481 agaaaagaac ttgttcaaca agtaaaggat gaaaatttgc attctgttgt tcagaatgat
     9541 attaaacttg atgacttaag caaaaaacta atcaaatgaa agcttacgct aaagcaaata
     9601 tttttttaaa acttaccggt tttgactcaa gaaaatatca tcttttagaa tcacgattta
     9661 tacttttaaa agatcttttt gatgagcttg agcttgttga taaagaatca gactctaaaa
     9721 aagaatttga aatcattagt aattttaaat gcgaaaataa tattattcaa aaggcttact
     9781 tactactttc taaaagatat aacaacgaat taaaagaatt atttagcaaa aaaagcctaa
     9841 aactcacaaa aaatatccca gtatgtgctg gacttggcgg tggaagtagc gattgtgcga
     9901 gttttttact actaatgaat gaaaccctaa atttaaaatt aaacctacaa gaacttataa
     9961 atttaagcat acaactagga agcgatattg cctttttttt aagtggcttt cactctgcta
    10021 atgtaagtgg ctgtggcgaa attatagaag aatttgaaga tgacatacct aatttaaaat
    10081 ggacttttcc acaaatatct tgccaaacta aagctgttta tgatgaattt gatagaggaa
    10141 tatttgactt tcaaaaaaac aataatcaag cgcaaatcta caaaaaactc agcacaaaag
    10201 agttgttaca aaattttaaa aacaaagaat taaatgattt atttactcct tgtgcaactt
    10261 tatatcctaa aatgaagtct tacttacaag aagatttttt tctaagcggt agcggtagta
    10321 gtgtttttaa ggttgatcga tgaaaattat tgcgagaaat aaaaaagctt tatttgatta
    10381 tagcatcata gaacgctttg aagccggaat tgtccttaaa ggaagtgaag ttgtagcctt
    10441 aagagcagga agagcaaatc ttaaagactc ttttgttcgc attataaaaa atgagatttt
    10501 tttacttaat tctcatattt cattgcttca tactacacat tctttctata aacacgaaga
    10561 aagaggtgct agaaagcttt taatgcatag aaagcaaatt gataaattat taggtaaagt
    10621 aagtatagaa ggatatacta ttgttgcatt agatctttat tttaacacaa aaaataaagt
    10681 aaaagccact cttgctttag ctaaagggaa aaatttgcac gacaagcgtg aaactttaaa
    10741 gaaaaagcaa gccgatttag aagctagagc tgctatgaaa aattataaat aaaggaaatt
    10801 aaatgaaaaa aattttaacc ctatttttaa taagtttagc attttttctt aatgcttgct
    10861 ccaaagaaga agaaattcaa aatgatttta tgtttgaaga gtatcacaaa ggagataaaa
    10921 tagtattaaa tagtgtaaat ggtggaagca aaactttaat aagaacagat aaaggttttg
    10981 tggtagaagg agaggaagga aaagttctaa tgtttgattt ttttggcact ttttgcaccc
    11041 catgcaaaga agaagcttta gatcttagca aactttggaa aaataattct agcaaattta
    11101 tcattatagg acttacacat tttgaagatg ttagcgatga aacagttaaa aaattcgcgg
    11161 atgattatgg tgcttactat tttctaagca atggcggttc taatgatcgt attattgctc
    11221 aaattttaaa agatatagac tatcaaaata tggagcaact tccttttaaa gttgttttaa
    11281 aaaatggaat ttatcaaaaa ataagcgatt actggaataa taatgctcca acaaattttt
    11341 atcttggcaa aattccaaca gaactcatgc aagaagattt aaataaaatc tacaaaggaa
    11401 aataatgcca aaaacccaaa ctctagagca gacaaaactt agtgaaccaa aaatgtataa
    11461 agttatactc ttaaatgatg atgtaacaac catggatttt gttatagaaa ttttgatgaa
    11521 tatttttcat caaaaccttg aaaaagcaag tcaaacaatg ttagaaattc atcacaacgg
    11581 ttctggaatt tgtggcattt acactcaaga aatagctctt tcaaaacaaa aaaaagttat
    11641 agatgcggct aaacttgcta attttccact acaagcaaag gtagaagaag aatgaaatac
    11701 caagaaaatt tacaaaaata tcttgataat gccaaaaatc taagcttaat aaaccaccat
    11761 gaatttgtta cctgtgagca tgtactgttt gcattactaa aactaagcat tgattttaag
    11821 gatatatttg aagaattttc agatggagat cttgaacttc tagaaactga attaaaaaat
    11881 tacatttctc aaaacaatca agttattaaa caagaaatag aacctacaat atctgttgtt
    11941 ttagatgaaa tcttactttc atctaaaaat aaaaataatg aaattaaaat tatagatttt
    12001 ttagaaaagc tcatacagga ttcaagaagt tattctagct atctcttaaa aaaacacaac
    12061 ataaatctta ccaaaattca agaacttcaa aatcatgaaa atatacaaaa tttaagcaac
    12121 cacacaagta atttaacact tttggctcaa aatggcaaga ttgatccttt aataggaaga
    12181 aaatttgaac ttgaaagaat gatgcaaatt ctttcacgtc gcaagaaaaa taatcctatt
    12241 ttagtaggag aagcaggagt tggcaaaacg gccattgtag aaggattagc attggctatt
    12301 gcggaaaaaa aggtgcctaa aaacttacaa aatgcaaaaa tttttagtct tgatatggct
    12361 agtatacttg cgggaacaaa ataccgtgga gattttgaga aaagaattaa agaaatttta
    12421 aatgaacttg agaaaatacc caatgctatt ttatttattg atgaaattca cactatagta
    12481 ggagctggaa gcacaggaga atctcatact gatttttcca atcttttaaa accagctcta
    12541 agtaatggaa ctttaaaatg cataggtgca acaactttta tggaatataa aaatactttt
    12601 gataaaaata aacctctaag tcgccgtttt gctaaaataa atgtagatga accaagccaa
    12661 gaagaaagtt tgcaaattct taaaggatta aaaaacaaat atgaagaatt tcatcatata
    12721 aaattaaacg atgaaattct tcaatatgct gtaatttggg gtaaaaaatt ttttaatgat
    12781 aaatttttac ctgattgcgc tatagatctg atcgatgaac ttggcgcttc ttttgcttta
    12841 aatccaaaag ctaaaaaaaa tgcaaattta aaagatttag aaaatgtttt agcaaaaatg
    12901 acccaccatc acaaaatgtt tgaattcgat caaaataaag ctttaatgaa tttaaaaaca
    12961 aatttaaaag caaaaatttt tggccaagat gaagttatag atagccttgt ttcatcactt
    13021 aagcaaagtt tcgcaggatt taaaaattcc aatacaccac gcggagtgtt tttgtttact
    13081 ggatcaagtg gagttggaaa aacagaattt tgcaaagctt tagctgaatt tttaggttta
    13141 aatttagagc gctttgatat gagcgaatat gcagaaaaac atgctataag taaactaata
    13201 ggatctccag ctggatatat aggttttgaa gagggtggac ttttaagcaa tgctattcgc
    13261 aaaaatcctt tcagtcttgt tctttttgat gaaatagaaa aggctcatcc tgatttaagc
    13321 aatacctttt tacagatttt tgacaatgct gaactcaccg acaatagcgg tcttaaagta
    13381 gattttaaaa atacaatcat tattatgaca tctaatctag gacttaaaga aagcaatgag
    13441 cttggttttt taagtaaaaa tgaagaaaaa agtaatcgtg ctatcaaaga tttttttgct
    13501 ccagaattta ttaatcgcat tgataaaatt ttacatttta atgatttaaa cgatgctata
    13561 cttgttaaaa ttatcgaaaa agaacttgat gaaatttcta aaaatttaaa taatataaaa
    13621 ttatcagtgg atgataaagt caaaatttat ttagctaaaa aagcctataa taaagaattt
    13681 ggagtaaggc ttttaaaacg cataatttct gaggaaatag gagaaaaaat cagtgatgaa
    13741 attttattcg ggaagcttaa aaaaggcggt atagctaaaa tcaaacttgg taaaaatgga
    13801 aagctcgaat ttatattcta aattactcaa tgcacctaaa aatgctcctg tatttttaag
    13861 tcaaaattta gaagctgatt ttattgtaaa agcttatact tttggtctat tcccatggac
    13921 aagtaaacct gtaacttggt ggtgtccaga tcctagatgc attttaattc caaatcaaat
    13981 tcacatccaa aaaaatatga aaaaatttat taatctctat caaattaaac ttgattatga
    14041 ttttttaaaa ttaattacat tatgtcgcga tacacgctct caaagctgga tagatgatga
    14101 atttattacc acttattata agttatttac ccaaggctat gcgcatagcc ttgaacttta
    14161 tgaaaataat gaacttatag gtggaattta tggtttaatt ttaggcaagg ttttctttgg
    14221 tgaaagcatg gtaagcatta aaaaaaatgc atctaaagtt gccatgatta aactttgtga
    14281 tttattaaaa ccttatgatt ttatcataga ttgtcaagtt tataaccaac atttagaatt
    14341 tatgggtgct cataatattt ctaggaaaga atttttaaat attttaaaag aaaaatgcaa
    14401 tcaagaaagt ggttttaaaa attttaaaga tttaattact taaaaaataa gcgtgaaaat
    14461 cacgcttatg acattgcttt agcaacttca gcagagcttt cacgaatttt ctccatacat
    14521 tctcttgctt cttttgcaag ttcaacactc tgattaacat cctctaaacc gcttttaata
    14581 ctctcaacca cttgtgatgt aacattacga atagaattaa tcgtagtggt aatttcatta
    14641 actgaatgcc ctgttctttc agctaaattt cttacttcat cagcaacaac agcaaaacct
    14701 ctaccatgtt caccagcacg tgctgcctca atagcagcat ttaaagcaag cagattagtc
    14761 tgatcagcaa tatcactaat agtctgaata atagatttaa tttcatctga ttgttgattt
    14821 aatgaggaaa caagatttga actttgagac atcatatcag caatattctg aacatttgaa
    14881 acagtgtttt caattacacg atctccatct tgagtaagat tatcattttt ttctgcaagt
    14941 tcgcttatga ggcgaagttt ttcttgatct tttttaactt gttcgcttat atctgtagca
    15001 aatttaataa ccttgtaaat ttttccatca tcatttttaa ccggattata acttgcttca
    15061 aggtatactt ttttattatt tcttccgtat cttatatatt tacctgattg aaatttgccc
    15121 tctcttaaat cttcccaaaa ttgaacatag tccttagagt gtctataatt agaatcacag
    15181 aacatactat gatgctttcc tttaatctca tcaatattaa aatccatagt tcttaaaaaa
    15241 ttttcattag ccgtaataat agtcccatca ggtttaaatt caataatagc catagaacga
    15301 ttagcagcag caatagtatt tctaagatca agcatttcat aatgtctttg agttatatca
    15361 ttggcaaatt taataatttt ataaacatga ccattattat cactaattgg aagataattt
    15421 gcttctaaat aaacatctat ccctccctta gctatacgtc taaaaagacc acttctggct
    15481 tttccatctc ttaaatcttt ccaaaaatca ctatatgccg aagaattaac aacttcaggc
    15541 aaacaaaaca tactatgatg cttgcccttg atctctgaaa gggagtattt catagttgtt
    15601 aaaaaatttt gatttgcctc taaaataacg ccatcggtgg taaattcaat taccgccatg
    15661 gtattcccaa tagatcttaa aatatctcct aaaccattac actttttttc aagttgttca
    15721 attatttcag tattattttt cttagcacca aacataaaac tcaccttttt aataataaat
    15781 tattttaaaa ttatatcata tttatatagt attatttact taaaattata ttaatttata
    15841 agttaaatat atcctttaaa cctacaataa tcatcttaaa ccccatagca gcaataaata
    15901 cttgtgctat acgagaaaaa acatgtaaaa tcaattttcc aactattttt tctatagtag
    15961 ctgcaaaatg aaaaagtata aacataaaaa taaaagctat cattactccg ccaagagcaa
    16021 catcaagccc accatcttcg gctataacga taacactagc taaagttcca ggcccaacaa
    16081 gcataggaaa tgccataggt attaaactct gtcttaaaat ttccttatca tccatatcct
    16141 gataagaact aaaatcctta gttgcaattt ttgttgaaaa aagtaaattt ttaatagcca
    16201 ttataataag aaccaaacca ccagaaaccc ttaaatcatc taatgaaacc ctaaaaatat
    16261 agttcataaa caaaggtcct gataataaaa ataccaaaac tatagtaaaa gctgtataga
    16321 gaatagttct aaaaagtttt tttcgaagca ttaaaggcaa tccatcactc atagccaaaa
    16381 attgagttaa attaccaaaa ggatttaata tggcaagtaa agtaattgca gcaaaaaaca
    16441 tcaaataaag ctcagaaccc atactagaaa acactatcaa tccttagttt ttacaaattc
    16501 caaagaaata gaatttacac aatgtcttac atttttagca gaaaatcctt ctccttcaaa
    16561 aacatgacct aaatgtccat tgcagtttgc acatacaatc tcggttctaa tcccatcttt
    16621 atcaggaatt cttttaacag ccccttttat ttcatcatca aagctaggcc acccacaacc
    16681 tgatttaaat ttatcttcgg atttataaag cgaagctcca cattgcttgc attgatagat
    16741 tcctttttca taaaaatcat tatatttccc actaaaagga gcttctgttc ctttatttaa
    16801 aattactttt ttttcttctt catttaattc tttcatgatc tacccttgta aaataatttt
    16861 tatattatat aattaaaatt tc
//
LOCUS       DAZAND010000026        16735 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.026, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000026 DAZAND010000000
VERSION     DAZAND010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16735
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.026"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..819
                     /locus_tag="ACHDOB_000675"
     CDS             <1..819
                     /locus_tag="ACHDOB_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN3325613.1"
                     /translation="NLTARITANPRNPQLIELKNVLNKLLDVLQARVGSDMNAIHKIF
                     EEYKSLDFRNKLENASGSVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSL
                     TTSSNSQAQSLEETAAALEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINL
                     LALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESI
                     KEQTAGITQINESVAQIDQTTKDNVEIANESAIISSTVSDIANNILEDVKKKRF"
     gene            complement(862..3228)
                     /locus_tag="ACHDOB_000676"
     CDS             complement(862..3228)
                     /locus_tag="ACHDOB_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HFN3325614.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELVRVKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFASEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHTNRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRA
                     RALYIQALTYERMQNVQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
     gene            complement(3251..4639)
                     /locus_tag="ACHDOB_000677"
     CDS             complement(3251..4639)
                     /locus_tag="ACHDOB_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HFN3325615.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYAFLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIVFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHALFMKNDRVYNIKFSFIQNFILACC
                     VCVSTFAILLML"
     gene            complement(4629..6116)
                     /locus_tag="ACHDOB_000678"
     CDS             complement(4629..6116)
                     /locus_tag="ACHDOB_000678"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HFN3325616.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALILMLLSSLMIFLSFLFLKLEQKALVSC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLIALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYVNSPVLVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIENFSLRLREIVALVCIIVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            complement(6118..7908)
                     /gene="nuoL"
                     /locus_tag="ACHDOB_000679"
     CDS             complement(6118..7908)
                     /gene="nuoL"
                     /locus_tag="ACHDOB_000679"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HFN3325617.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVARDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKFTAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHNEHPHEASKIALLAMSPLM
                     VLAIVAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGVILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPQFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQIIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            complement(7910..8206)
                     /gene="nuoK"
                     /locus_tag="ACHDOB_000680"
     CDS             complement(7910..8206)
                     /gene="nuoK"
                     /locus_tag="ACHDOB_000680"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HFN3325618.1"
                     /translation="MIEKYFFIAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            complement(8203..8721)
                     /locus_tag="ACHDOB_000681"
     CDS             complement(8203..8721)
                     /locus_tag="ACHDOB_000681"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HFN3325619.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAIMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLARKELTKEKQ"
     gene            complement(8718..9359)
                     /gene="nuoI"
                     /locus_tag="ACHDOB_000682"
     CDS             complement(8718..9359)
                     /gene="nuoI"
                     /locus_tag="ACHDOB_000682"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HFN3325620.1"
                     /translation="MKNYYLVDEKRKTPVSAWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDADLLVVKTPNYYDVMIERALENQDTQEQGENK"
     gene            complement(9369..10367)
                     /gene="nuoH"
                     /locus_tag="ACHDOB_000683"
     CDS             complement(9369..10367)
                     /gene="nuoH"
                     /locus_tag="ACHDOB_000683"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HFN3325621.1"
                     /translation="MSDFAFFALEALIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVAII
                     SYESVGALALIAIVMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYASMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALAVLL"
     gene            complement(10360..12822)
                     /locus_tag="ACHDOB_000684"
     CDS             complement(10360..12822)
                     /locus_tag="ACHDOB_000684"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HFN3325622.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRSGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFEELVKLFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDIIKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDVGIAKYSKNFISHIHKSGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVIGSDFYFHKNATKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDKNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLNPKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            complement(12819..13511)
                     /locus_tag="ACHDOB_000685"
     CDS             complement(12819..13511)
                     /locus_tag="ACHDOB_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325623.1"
                     /translation="MIYDNALCFLDMLSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFSDLDEGYLSAESCFGEEEAGEVLAFLREAKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYELKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSLKAKLCLDENLQGTIAFLNYENNG
                     FDFIPIRIKEAK"
     gene            complement(13508..13735)
                     /locus_tag="ACHDOB_000686"
     CDS             complement(13508..13735)
                     /locus_tag="ACHDOB_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HFN3325624.1"
                     /translation="MRRIDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFIKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            complement(13732..14958)
                     /gene="nuoD"
                     /locus_tag="ACHDOB_000687"
     CDS             complement(13732..14958)
                     /gene="nuoD"
                     /locus_tag="ACHDOB_000687"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HFN3325625.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRIASHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCATLYKDTPPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(14960..15754)
                     /locus_tag="ACHDOB_000688"
     CDS             complement(14960..15754)
                     /locus_tag="ACHDOB_000688"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HFN3325626.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKDDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIADKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHIFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            complement(15751..16254)
                     /locus_tag="ACHDOB_000689"
     CDS             complement(15751..16254)
                     /locus_tag="ACHDOB_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045271 - respiratory chain complex I
                     [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HFN3325627.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLI"
     gene            complement(16236..16625)
                     /locus_tag="ACHDOB_000690"
     CDS             complement(16236..16625)
                     /locus_tag="ACHDOB_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HFN3325628.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFVFIVLLGVGFLYAYKKGAFAWQSIK"
BASE COUNT         6272 a         3111 c         2036 g         5316 t
ORIGIN      
        1 aatttaacag caagaattac tgctaatcca agaaacccac aacttattga acttaaaaat
       61 gttctaaata aacttcttga tgttttacaa gctagagtag gttctgatat gaatgctatt
      121 cataaaattt ttgaagaata caaaagctta gactttagaa ataaattaga aaatgctagc
      181 ggtagtgtag aattaactac taatgcttta ggggatgaaa tagttaaaat gctaaaacaa
      241 agttcagact ttgctaatgc tttagctaat gaaagtggaa aattacaaac tgctgttcaa
      301 agcttaacca cttcttcaaa ttctcaagct caatctttag aagaaactgc agcagcttta
      361 gaagagatca cttcttctat gcaaaatgtt tcagttaaaa ctagtgatgt tatcactcaa
      421 tctgaagaga ttaaaaatgt tacaggtatt ataggtgata ttgcagatca aatcaacctt
      481 ctagctttaa atgcagctat tgaagcagct cgtgctggag aacatggtag aggatttgca
      541 gttgtggctg atgaagttag aaagttagct gaaagaactc aaaagtcttt atctgaaata
      601 gaagctaata ctaatttact tgttcaatct atcaatgata tggcagaaag tattaaagaa
      661 caaactgcag gtatcactca aatcaatgaa agtgtagctc aaattgatca aactactaaa
      721 gataatgttg aaattgctaa tgaatcagct attatttcta gtacagtaag tgatatagct
      781 aataatatct tagaagatgt taagaagaag aggttttaac cttagataac tagccaaaaa
      841 gctagttatc tctaaattta cttattgatt taaaatttga tttttactct tacataaatt
      901 ctgccaattt gaagcacttt tgatttcaag acattgtttt aaactttctt tttcagcttg
      961 tacattttgc attctttcat aagttaaggc ttggatatat aaagctcttg ctctatcttc
     1021 atctgaaagt tttaatttaa gtaaatctgt taaaacagct aaactttctt catttttatt
     1081 gattttagtc aaagcatcaa gatatataaa ttctaaatta ggactaaaaa gatttatacc
     1141 tttaaaattt tgatagtcaa tggccttagg tgcgtaagtt aaaatagttg tttgcatatt
     1201 atgatcatta gcgtaagaaa gtaaagcatc gtaggcttct accatactaa aattcattgg
     1261 aaaactttct aaaatttgca aaattttaat ggcttgattg tagtcattta agcgcaataa
     1321 agataaaaat tgcaaataat aagccttaaa attctcatca tcacttttta aaattctaga
     1381 attagctatg tctttagaaa ttttaatcac ctgaggatat tgtttattgt caaaaagaat
     1441 agatgctttt tgaagaccat aaaatataga atcttcatta taatttttat ctatataatc
     1501 aagtgcttgt tcaacattag aagttctgat aagacaagct aacatttgtt ttttattctc
     1561 aattttctga cctatatcat aagcactaaa acgcataaaa atatttgcag cattgataca
     1621 attatcagct tttatcgcat tttttaaatc attaatggct gctttctcta aaaattgagt
     1681 agcatttgga atttttttac tttctataag atctttataa gctaaaatag cactaaaatt
     1741 tccctcttta taataaagtg caacatcttc atctaaagct ttatttgcaa tattctcatc
     1801 tttatttgca tattgcttca ttaaatctgt ataacgctga tgcaaaaagc ttgcattatt
     1861 atcacctaaa gcaaagaata cctcatcact tgctttttta atttcatcta aatacttacc
     1921 atctaaataa tcatccatat ataaatcaag gtatttttta gcatcactag atctgttagt
     1981 atgtgataaa actaaggcta aatcttttaa agtttcttca taacttggat caagttttga
     2041 cattttagca aaggcatctt cataaatact tgcacttata tcaaattgtc ctttttgatt
     2101 aaataattta gcaagttcta aagatcttgg aatatctttt ccaaaatatt caggattggc
     2161 ttttaaaatg gtattaatat actctatagc tttatttact tgctcatttg aaagcaaatt
     2221 ctttgccaaa ctcatagctg ctcttgcagc taaatctaaa ttttttgtat taaaataagt
     2281 attttcataa atatttacag ctttttcttt ttcatttaaa ttataaatat agtctgcata
     2341 atcaagtttt gataactgag taaaataatt attaggttgt tcattatcca aaatcgacat
     2401 tgtatactct acatcagcac gctgagctaa agcgatataa gttcttaaca ttatatgtaa
     2461 aacttctgaa aaatttttat cacttgtaaa agtacgcgtc caatttttag catcatcaat
     2521 catcttttct aaaatttgtt gatcacgcat acttggatct tgagtgtaaa gtttattttg
     2581 agctcttaat ttataaagta taaattcact agcaaaaata ctgccacgat atctattgat
     2641 agcattttgt gcatcaatca caacttgatt gtaattagcc ttatcgtatt cttttttgat
     2701 gcgtaaataa gtattgatat ctgcactttg aggaataaca acaggatcag aatttaaatc
     2761 taaagctcca acataaggca aactctcatg tggaaaattg atattaaaat caagtccatc
     2821 atagtcttta acgcgtacta gttctggtgt aaaaataaaa gtaaaagcct tacttttatg
     2881 cgaacttgat gaactgagtt ctttatctat ataaatattt tgagaagtgt caaacattct
     2941 tgcttgtatt tttggcaaaa tgatcatttt aattttttga gcttcttgta taaattttaa
     3001 atcaaaagca gaaaaactct gatcttttaa tttattatca accatacctg caatatcaca
     3061 ttcaaaatga acttttgctt cggtaataaa tttttgacat gtaaattcta aatcattact
     3121 cgcatgtaaa actgcaaaag cttgattatt ttcgcgaccc gtatttaaaa caagctcaaa
     3181 agcaaaagca tttaaaaaac ttaataaaat taaaaataat attctcataa aaataattat
     3241 agcaaaactc ttataacatt aacaatatag caaaagtgct tacacaaaca caacaagcta
     3301 aaataaaatt ttgtataaaa ctaaacttaa tattataaac cctatcattt ttcataaata
     3361 aagcatgaat taaaatcttt aaatacgcat aaagcataat aacagaagat aaagccacaa
     3421 aaagcgccaa ataccaatat ccatttaaaa ttgctgtatt taaaatcata aatttacccc
     3481 aaaatactcc aaaaggcggg atacctgcta aagaaagcac actaatgctt aaacaaaaaa
     3541 caattaaagg ttttttaacc aaaagcccat ttaaactctc ataagaatta ttctcataat
     3601 tgcttaaaat cataaataca gcataatttg caaaagcaaa taaagtccaa tatccaaaaa
     3661 tagcaagcaa aattccatca aaattttgtt cttttaataa aggaatgcaa gctaccaaaa
     3721 ccaaagaaga atgcactaca gaactataag caaacatttt tttgatattg ttttgactta
     3781 gagccgcaaa agcgcctata agcatagaaa aaatcgctag aactattatg atatattcaa
     3841 aacctgtatt atttaaaaaa tcaaacaaac gaataaccac aaccaacatg gcaacttttg
     3901 gcacaactga aataaaagca accaaatttg tatgtgctgc ataatacaca tctttaagcc
     3961 aaaaatgaaa aggtgccaaa gaaagcttga ttgcacaaag aacaaaaatc atcactccgg
     4021 cacccaaaag catgggatct ttttgaaact cattttttaa cgctaaatta gcagataaat
     4081 ctaaagttcc tgtttttaaa taaataaaag ctacagccat aacaaaaaac ccagctccta
     4141 cagccgctac actaaagtat tttatcgcac ttgaaatagc attatcactt ccacgcattg
     4201 ctattaaagt ataaagtgct aaagaagaac tttcaagtcc tataaaaata agcactaaat
     4261 ttgagcttga aaccatcaaa agcaaagatg cgatcataaa taaaaataaa gcataaaatt
     4321 caccttgatt ttcttctttt tgcattaaaa gatataaaaa tgaaaaacac aaaatcacca
     4381 aaaaagcata aaatgaaaca atatcattat ttaaagtagc caaaaaagct tttgcttcta
     4441 aaccttgagc atttgcatta tttaaaatca aaaaagcact tacaattaaa gataaagaac
     4501 ttataccgat ataaaacgat cgatgaaatt tccaaaaacc agagcaaagc aaaagaacta
     4561 ttgcagttgt aattaaaaat aaaaatggat aagataagct tatatttaaa agttctaaat
     4621 ttaaaaaatt atttaacatt tgcctctcct attttagata aaaaatctaa agtattttgc
     4681 tcaacagctc taatattcat tgtttttata agattatcca catctttttg tatgggcttt
     4741 aaaagtatat ttggcataag ccctagtcca aaaatcatta ctataatgca cacaagcgct
     4801 actatttctc taaggcgtaa agaaaaattc tctataaagc tttgtttttg catgaaaaat
     4861 atttttctaa atactgcgaa catataaatt gctcctaaaa taatcaccaa acctgccaac
     4921 aaagcgtaaa ataaattaat ctttgctata cctaaaagaa ttaaaaactc tcccacaaaa
     4981 gaaacagtta aaggcaaaga aacgcttgcg agtaaaatta acataaagaa aattgaaaat
     5041 aaaggtgctt ttttggccaa agaatggtaa aaagaaatat cataagtatg atatctttgg
     5101 tataaaagtt caaccattaa aaataaagct cccgttacaa taccgtgtgc aaacatataa
     5161 aaaaccgcac cgctaatacc caaagcattt aaagaaaaaa ttcccaaaat catcacacca
     5221 agatgtgaaa tagaactata agcgatcaat tctttaatat tttctgctct ataagcaatt
     5281 aaagcattat aaacgatact cactatacat aaagctacaa ttaaaggcat aaaatacaca
     5341 ctcgcatctg gaaaaagtgg taaacaaaaa agcaaaaatc caaaaggagc cattttaaaa
     5401 actacaagca ttacagaaac aagaacaggc gaatttacat aaaccttagg tgcccaagta
     5461 tgaagtggaa ataaaggagc tttgatagca aaagcgataa aaaatgctcc aaaaagtaaa
     5521 agttgctctg taaaatttac tgccgaggca ttatttttcc aaatttctaa gtcaaaagtg
     5581 aagatgttta aaagttgata atttaaataa gcttgataaa tcaatgctat aagcattaaa
     5641 attgaacccg caaaagcata gataaaaaat ttcacccctg ctctaaaatc tttaccataa
     5701 actcccataa tataaagcaa aggcaaaaga gaaaattccc aaaaaacata aaataacaaa
     5761 ccatcttttg cactaaaaag tcccataatt gcaaattcta aaaagaatat acaagataca
     5821 agtgcttttt gttccagctt taaaaataaa aagcttaaaa atatcatcaa agaacttaaa
     5881 agcatcaata taagtgcgat actgtctact cctacatgaa agctaaaaaa tttcaaaatt
     5941 ttaaaagaaa gattataatc aaagcttacc ccttgtaaaa aatccgcaaa aatatccaaa
     6001 tttaaagcca aaatcataaa acttacaaca acgctaaaaa ccttaacgcc tccacgattt
     6061 aaaagcaaaa ccacaaaagc agaaattaaa ggaaaaaata tcaaataatt tagcatttta
     6121 caccatccat accaaaatca acaaaatcac aaaagctgcc accaaaaatc taagcattaa
     6181 gtttaagctg tttggcataa tcattttttg tgaaataatt tgagaataca aagcaatttt
     6241 ttcaactatt ctatcaaaaa tataaagatc acaatgcttt aaaatcgcac ataaactttc
     6301 atattttgaa acgataaatt gatgatagaa ttgaggaata aaataatcat tacttaaaag
     6361 tttgtgaatt ttattttctt caatactttc tttaaaccaa gaatttttat aagcaaaaat
     6421 agccaaaatt acacccaaaa tagctgctac actcgcacaa atcattacaa tttgattttg
     6481 tgcatcaata aaaactaatt ttgtgcttaa atattcaaaa aaactatgtt caaaaaatcc
     6541 tgcaacaata gctaaaacca tcaaaggact catagccaaa agtgcgattt tacttgcttc
     6601 atgtggatgt tcattgtgtc ttgcaggggt aaaaaatacc aacattaaaa gtctaaagct
     6661 ataaaatgct gttaaaaaag ctgcgattaa aagcactaaa aaaataccat ggtgaaaaga
     6721 aatgaaagaa tatcctaaaa tcaaatcttt agagaaaaat cctgcaaaag gataaattcc
     6781 tgctaaagct aaagatccta tacacatcaa aatagccgta aattttaaag gtttaaaaag
     6841 tccacccatt tttttaatgt ctaatttatc attcatagca tgcattacat ttccagcacc
     6901 taaaaaaagt aaagatttaa aaaaagcatg tgtagctaag tgaaataaag ctataccata
     6961 agccccaagt cctgcggcca caaacatata tccaagttgc gataaggtag agtaagcaat
     7021 aatacgtttt aaatccctag ccaccaaagc catagaggct gcaaaaatcg ctacaaaagc
     7081 tccaagtaag gcaataatat aagaaacctc aggaactaaa tcataaagcg tgctagcacg
     7141 aattaccaaa taaacccccg ctgttaccat ggttgctgca tggattaatg cagaaacagg
     7201 agttggccct gccatagcat cagcaagcca agtgtgaaaa ggaaattgtg cagattttcc
     7261 catagctcct ataaataaac aagttgcgat taagatcaaa gcattgtgat ctaggctttg
     7321 tgccatggaa aaaacttcat catattttaa agttcctgct tgtaaataaa gccaaaaaat
     7381 tcctaaaagc atacccaaat ccgcaatacg attcataata aaagcttcat tagctgcaaa
     7441 agaataagta tcgtttttat accaaaaacc tatgagcaac caagagcaaa gcccaacgcc
     7501 ttcccaacct acgaaaagtc ctaagaaatt atcactcata actaaaaaaa gcatagaaaa
     7561 gacaaaaagc cccaaataag caaaaaattt attaaaacct tcatcatgag ccatataaaa
     7621 aatactataa aaatgcacac aagtagctac aatacctaca acactcatca tagtgagcga
     7681 aatggcatct atatcaaagc caaaatttac tccagcaaac cattcaaaca aactcacatt
     7741 aaaagcttca ttgcaaaaaa gcaaatacaa agaacaaaaa gcactcaaag ctactaaaag
     7801 tgaacaaatt atccctacaa attgtttttt ctcactcaaa gcaaaacaac ttgcaaacaa
     7861 aaaagctaca aaaggactaa aaagagaaat caaagctaaa ttttgcatgc taagcctcca
     7921 cttcttttaa gctttttaat tccaaagtgc cttttcttct ataccaaagc acacacaaag
     7981 ctacaccaac agctacttca caagctgcta cacccatgat aaaaagcgca aaaacctgtc
     8041 catttaaatc attgtgcatt ttagaagctg ctactaaggc taaattagca ctatttaata
     8101 aaatttcact cgaaataaaa agcatgatga gattttgtct ttttaaaatc cctacaagcc
     8161 ctatgacaaa cattaaaata gctataaaaa aatacttttc tatcattgtt tttcctttgt
     8221 tagctcttta cgagcaagca ctatagcaca aactaaagca atcaaaagca aaatagctat
     8281 aaactcaaaa gctaaaagat attttgaaaa aatcgctaaa gccagttgtt tattaaaatc
     8341 aaacaaagca ggatcattta aaggcaaatc cgtgctgata ttttggtatt taaaacctat
     8401 aagcatggcc aaaagtaaaa tcgcacttaa aaccaccaaa gtaaaaaaac tttttttagc
     8461 tttaagttgt tctttaaatt ctttagaagc atcaaaaaac attatcgcaa aactataaag
     8521 tccaagcaca gctccactat aaacaataat ttgtatcacg cctaaaaact ctgcatcaag
     8581 taaaaaataa aatcccgata aaaacaccat tccacccgct aaagcagaaa gagaataaag
     8641 catattttta cttaaaaccg caatgccaaa aaaacctaaa accactacac taaaaaatac
     8701 aaaagccaaa ttttctatca tttgttttct ccttgctctt gtgtgtcttg attttctaag
     8761 gctctttcaa tcatcacatc gtaataattt ggtgttttta ccaccaataa atcagcatct
     8821 tttctaaggc ttcccgctcc ttcaaattca acttgatttt taagcttatc aataggagtt
     8881 aaaaaatctt gcttgtaacc aaaataagac ctttgctcgg ccgcattttc atactctgtg
     8941 ccatgtacta tagcaagttc aggacaaacc tcagcacaaa aaccacaata aatacaacgc
     9001 cctaaattaa tactataatt tcctactttt ttacgcccat tttcatctaa agaagtttcc
     9061 attctgatac aattactaat gcaaattttt tcgcaaagcc cacaacctat acatctttca
     9121 ttttcgcttt ctataaaacg catcaaacga tgaacagcac ggtaacgatt atcaagcttt
     9181 accttttcaa aaggatattt aatcgtagcg ctattatttc tcttaagtaa ttctctcatc
     9241 atcacaaaaa gccctacaaa aagctctagt ttaacgcttc tacgcaaagc ttgtgaaatt
     9301 ttttcccaag cactaacagg agtttttctt ttctcatcta ctaaataata atttttcata
     9361 tcaaactcct ataaaagaac tgccaaagca gtgattaaaa ggtttaaaac cgctaaaggg
     9421 attaagatta aatagcacat tttcatcact tgatctggac gcaattgcgg aaaagcagct
     9481 cttgcccaaa aataccaaaa gaaaataaaa cttgatttta ctatcatcat aatccaacca
     9541 ggaataatcc aaaagctatt aaaaccccct aaaaacaaaa gagttaccaa aatagctcca
     9601 gctatcatag aagcatattc acctatgaaa aacatacccc atcttaaacc cgaatactcc
     9661 gttccataac ccgctacaat ttcagcatca ttttccgtca aacaaagcgg agttctatta
     9721 gtctctataa ataaagcaat tataaaaagc acaaaagcca agggctgttt aaaaataagc
     9781 caagaaaaaa atccatcgct ttgataattg ttaatatcca ccaaagaaaa agaacctaca
     9841 agcattacaa tagcaatcaa agctaaagct cctacgcttt cataggaaat aatcgctaca
     9901 agccctcttg cagcccctaa aatcgaccat ttattattac ttgcaagtcc acccaaaaac
     9961 accgcataaa agcaaagtcc tgaagtacca atgacaaaaa gcaaagctac attaatatct
    10021 gccactatag gctgaatcac ccttccaaat aaagtaaatt caggcaacat gggaatagct
    10081 gctaaagaaa caaaagcaca aatagcagaa attaaaggtg ctatagcaaa aataaatttt
    10141 tgcgaatttg aagggattat atcttcttta gtaaaaagtt ttatcatatc agctacaagt
    10201 tgaataagcc caaaaggccc taccatatca ggccctatac gtctttgaaa ataagctaaa
    10261 acctttcttt cagcataagt tgcaagacct gctaaactcg caaatattgc aatgataata
    10321 atacatttaa ttaaagcctc taaagcaaaa aaagcaaaat cactcatggt ttgctcctaa
    10381 tttttctaaa ttcgccacaa caaatctttc atcaaaaaag cttagcgtat caagtttttc
    10441 atcgaaatac ggcaagaaag ctccattttt tatatcctta tccacacgca cgctaaggct
    10501 taattcttta tcttttattt taagttttac aagatcttta tcttttaaat ttttctcttt
    10561 agctaaattt tcacttacac ctaaaaaaat cacctcatta atcgcactag cacgatttga
    10621 aaatctacca aattgatagc taggattagc gctataaagc aaaatttcat cttcttttgg
    10681 gtttaaattt tcaaaatttg gagagatgaa ttctttttta gcaacttgtt taaaacattc
    10741 taaattaagc tcatatcccc ttttacaatc acctgcattg gtataaaaat tatctaaatg
    10801 atcaaaatca atcggagaaa aacctttatt tatagggagt ctcttagtat aatttatagt
    10861 atattcctca tcaaaaccta aagcattagc caaatcattt aaaaaatatc ccttaaattc
    10921 taaagcagcg ttagttggca ccactctttt atcataattt aaaaaagttc cttcttgctg
    10981 atttaaactc gcactagcta aatttgcatg ctcttcataa gaaaaactaa aatcaccttt
    11041 ttcattgtag cctaaagtct tgccttcttg tgtattttta tccaaatcac aaatcatagc
    11101 cacacctaag gtattagtat gcgtaggatt taaaaagact ttaaaaggag tagtattttg
    11161 aatcaaagca agtagtttag caagttttgt cgcattttta tgaaaataaa aatcactccc
    11221 tataacaaga gtaaaatttg cttttttaag caataaatct tctaatttat cttcatctat
    11281 acctaaattt ttagcaaaaa cagaacgttg cacttctata atttttttta cttttttagg
    11341 tacgactttt tttacttctt tttggatttc attgccttct tcatcttttt ctatgacttg
    11401 ttctacaact tcttcgttga tactttcttc tatttcttta ttttcgctaa caaaaaactc
    11461 tgctaaatga gttttaatac cttcatcttg actaaatttt tgaagtaaaa aatataaaat
    11521 ttgctcttca tcgccacttt tatgaatgtg tgagataaaa tttttggaat attttgctat
    11581 acccacatct tccataggat gaaaataaag ccctgagcct ttattcatca ctaaagcatt
    11641 attgatttta tagctaagcg ttggagcatc atatcttaaa agcattccag ccacaaccaa
    11701 aaaatcactt tttattatat cttgagtatt ggcactataa aactcgccag aattagcgat
    11761 aaattcttgt aaaaattctt taaatttcaa agcttcttca ttgatcaaag aaagattaaa
    11821 tttctttttt aaattttgta aaatcaaagc ttcttcattg gtaataaaac tattaaattt
    11881 aatgttttta atttcatttt tctcaaaaag tttcacaagt tcttcaaagg ctttttcatc
    11941 tttatccgcc tcattttgcg tatcaaaagc aaatcttgca gccttattta aactcgcaaa
    12001 ggcaaaatca ttactcacac gataaatttt ttctttttga ttactaatgc cgctttgctt
    12061 aatatcataa tacatcaact cacaatcgct tgaatgcgga tttgaagcag ggattctttt
    12121 aagttcccaa atatttgaag tgtattgaaa tttcgaacct atcaaagctc ctgttggaca
    12181 cacgcttgta cattctccac aaaatgaaca atcaagcgta tcaccatttg cagggcctat
    12241 caaacttttt tgaaatttag tccaaatcgc ataagcatct tttcccatgc tctctttaaa
    12301 gctattatcc acactatctc cgctacgagg aacagtcttt aaagcacttt ctccgatttt
    12361 atccttacaa actgtaatgc aacgctcaca tactatgcaa agtgcgggat cataattaat
    12421 cattccccaa tgtttatgtg gtttatgtgt gtctttaatc caatgctttt gaacatttac
    12481 gcggctttta tgagtgaaat tttgcaattc acactcgcct gatttatcac aaactccaca
    12541 ttctaaagga tgattgatac aataagcttg catgatctca tttctttcat cccaaagatt
    12601 ttgcaaatca ctttctacaa ccatgccctc ttttgcttta gtattacaag aatatacctt
    12661 tttaccatca gcttcaacca tacacatacg acaagccaaa gtaggactac agcctgaaag
    12721 atagcaaatc gctggaataa aaatatcatt tcttcttgct atatttaaaa tatattcgcc
    12781 ttcttcaaag gcgcaatcta taccattaat cttaactgtc attttgcttc ctttatgcga
    12841 attggaataa aatcgaaacc attgttttca taatttaaaa aagctatggt gccttgtaaa
    12901 ttttcatcta aacaaagctt ggctttaaga ctaaaatctt tagccaaaat ttcaacttca
    12961 ctttgatctt tgcattttgc aatttgtaaa aattgctttg aacaatgtaa atttttatct
    13021 tgtaaatttg ctctaaaaag cactaaaccg tcataattat ctagttcttt tagggtgttt
    13081 aatttggcct ttttaaaatc gcattcttct tcatcgctat ctaaaatctt taattcatat
    13141 tttacgctta agaaattcaa aaaatatttg atattttcgc tatctttgta agaatggata
    13201 tttttatcta taattaaata cttagcctct cttaaaaaag caagcacttc acctgcttct
    13261 tcctctccaa aacaagattc agcacttaaa tatccctcat ctaaatcgct aaattgtcct
    13321 tcatcgctta atttacaaag caaagccaaa acaaaactca aacttgcaat ttcacattta
    13381 taaaatttag cttttaaatt tttatcttcc aaacaagaaa tattaatgct atttacacct
    13441 attttttcac ataaattttt gtttttaagg cttagcatat ctaaaaaaca aagagcatta
    13501 tcataaatca tactctctcc ttttttataa caatagtcca atctacttga ttaaatttca
    13561 aagaatttaa aagctcacag ccttgttctt ttataaaaga aaaacttttt tcaacaggag
    13621 aaaaatcgcc gatttcaaaa agcaccacta aaacctcgcc ttgttttgct tcttttatga
    13681 tttgtgctaa atcttcaaaa agttctttgc tttttcttaa atctattctt ctcatcgatc
    13741 tatctcacct aaaactatat ttacattacc cataatggct acaacatcag ctaaataagt
    13801 acctacaagc atttcttcaa aaaatgcaca atgccaataa ctaggcgttc tagcctttaa
    13861 acgataaggt cttcctgtgc catcactatg gataaaaaag ccaagctcac cttttggact
    13921 ttcagtaggc acataaactt cgcctttagg gggttttaaa ccttgagtga ttaaaacaaa
    13981 atgctgcatt aaagaataat tctgcgttaa aatttgttcc tttgaagcac ttacatactc
    14041 aggatgcgta gctaaaattt caggtggagt atctttataa agtgtggcac attgtctaag
    14101 gattttcaaa ctttcacgaa attcttgcat ataaacttta tatcttgcat aagaatcccc
    14161 ttgcgtagca taaggcacgc caaattcaac ttcattataa agcaaataag gctcttcttt
    14221 gcgtatatcg tattttatac cgcttcctct taacatcaca cctgtacaac cccaatttaa
    14281 ggcttgctct ttagtaacca cacctacatt ttcagttctt aaacgccaaa ttctattatc
    14341 atctaaaaga tcttcataat cttttaaatc atttggaaat ttatcgcaaa atgcaagcat
    14401 ttcttctaaa taattctcag gtaaatcaag cataacccca cctattctca tagaagaatg
    14461 cgtaagtctt gcaccgcaat acttttctat caaatccaaa acatactcac gttctctaaa
    14521 gcagtataaa aacacactca tcgcaccaat atcaagcgca tgagtggcaa gccaaagcaa
    14581 atgtgatgcg atacggttta attctaaaag tatcatccgt atgactgctg cacgacgtgg
    14641 aatttctaaa ccacaaagtt tttcgaccgc cgcacaataa gcataattat ttgctgaagc
    14701 agcgatatag tccattctat cagtagtagg aataaattct tgataaatca tattttcagc
    14761 cattttttcc ataccacgat gcatataacc tatacaagga cgcgctttta caacttgctc
    14821 tccatcaagt tctaaaataa gacgtaaatt tccatgtgct gaagggtgtt gagggcctaa
    14881 gttgataatc atttttgagt cttcttgctc aaaagctata ttttcataat aaggttttaa
    14941 cttgctagga atttgcattt taacgccttt tctctaaaat ttttgcttca tcacgtttta
    15001 ctttttttac aaaagccacg ccttcatcct cttgatattc ttgtttaaag gaaatttcct
    15061 tcttttgacc accttttggc acttcatgat aaagtcttgc aaaatttagc gtatctttat
    15121 catcagcaaa accagaatct ctttgttctt cgcccactac ttcgcggtat tctttgccaa
    15181 aaattttatc aatctcatac catcttgcaa actcatcgcc ctttaaagga taagttttta
    15241 aaagcggatg tccaaaccaa tcatcaggca ttaaaatgcg ttttaaattg ggatgattta
    15301 tgatgaaaat tccaaacata tcataaattt ctctctcact ccaatttgct cctttaaaaa
    15361 tatgagccac gctttgcaaa cgctctttta cgcctacaaa agtttttatt ctcactctta
    15421 attttttttc taaatttaaa agctgataaa acacttcaaa accattttta tctgctataa
    15481 aatcaatagc acttgcttct gtaaaactta aataacctaa agttttaagc atttgcaagg
    15541 ttttaacatt gtcttctttt ttgatttcta ttacccaaaa atcaagctct acaaaggaat
    15601 ttaaaatttc tacttgagtt tttaaaactt caaaatcatc tttaaaaaca ctttcattaa
    15661 catcagattt tacagtgtgt ggtgcgtgat aaaatctatc tttgtagtaa ttttgagttt
    15721 gagcattttt tttatcgcta tactttctca tcatatcaac cttttaggtg cgattttacg
    15781 acttgctttt tctttgcgga tctttttttg caaaatcatc aaagcaaact gaaaactttc
    15841 tgggcgtgga gcacagcctg gcacataaat atctacaggt ataattctat ccactccttg
    15901 aacagtagaa taagtattaa acataccgcc tgtattggca caacttccca tagaaatcac
    15961 ccatttagga tcaggcattt gatcataaag tcttcttgta aattcagcgt gttttttaca
    16021 taaagttcct gcgataatca tcacttcact atgacgtggt gaagctctaa aaatcgttcc
    16081 aaatctatca aaatcatatc ttgaaccccc agccgccatc atctcaatcg cacaacaagc
    16141 aagtccataa gataaagccc ataaagaatt actcctaccc cattgaacta gtttatcaac
    16201 gctagttaaa actacgggca aaccacttgc ataatttact tgatgctctg ccatgcaaac
    16261 gctccttttt tataagcata taaaaatcca actcctaaaa gtacgataaa aacaaaaact
    16321 tctaaaagtc caaaccaacc taaatcttta aaaatcaaag cccaaggaaa taaaaacaca
    16381 acttctatat ctaaaagtat gaagattaag gcgatgatga aaaattgaga gttaatcttg
    16441 ttagcttgtt taacaggaat aggaccgcat tcataaattc caagtcctaa ttttttgcga
    16501 ttttttgcgg caaaattatt accgattttt gaagctaaaa aaaccagtcc aaaaaaaata
    16561 acactagcaa gtactagcat taaaaaaata ccaaaataag gatgcgaagc atctatatga
    16621 gacatttatt ctcctttttt aaagcacttt aatcactcca caacaaaaat taaatttaca
    16681 cttttcttta ttttactcta aactttctat attgaaactt atattaaaaa atatt
//
LOCUS       DAZAND010000027        16582 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.027, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000027 DAZAND010000000
VERSION     DAZAND010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16582
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.027"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            58..261
                     /locus_tag="ACHDOB_000691"
     CDS             58..261
                     /locus_tag="ACHDOB_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325629.1"
                     /translation="MLLNTPCRGIVDTNFESKRINITSTLKFQEKKEKVEAKAEKEEA
                     NKDNSDSTNTDTNKKDKLLDISA"
     gene            611..2701
                     /locus_tag="ACHDOB_000692"
     CDS             611..2701
                     /locus_tag="ACHDOB_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HFN3325630.1"
                     /translation="MKIFKIIFLIISIFLSSSAFARVDDYINEANLIKDMLKQSIETY
                     KKGDNLGAKKLSEDAYFQHFENMEGPIGRNIGRKAITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLKAEASDTNYDKAKAEKSSLEANAKREADAEALIA
                     QMMGVDKKDLAQSSLTTQASTPANNDTSKLTDDNASADLQAAAAMDARLQFILDNIST
                     KFSQAANAFKEKNYQASKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLI
                     RQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSN
                     DIKLALDEILKNYDGFSASIVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSK
                     GVALIKASADKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALII
                     VVAIVSYLVQSGNKNRLNIAYSALFTGVILSFVTAFGVSWLFKENAGQSRELIEGITM
                     LIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAET
                     VLFYQALLFDAKTSTDFSAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYII
                     FYMVFVFTGKGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIG
                     ILITKQISKKGVKS"
     gene            2698..3237
                     /locus_tag="ACHDOB_000693"
     CDS             2698..3237
                     /locus_tag="ACHDOB_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HFN3325631.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            3319..4722
                     /locus_tag="ACHDOB_000694"
     CDS             3319..4722
                     /locus_tag="ACHDOB_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S-containing protein"
                     /protein_id="HFN3325632.1"
                     /translation="MSIYFVHFLISVLPLSILMAFITPDKKYIFKSFLVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLL
                     ILIESDKALANILLTLMRNSIIETHTFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSL
                     KIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVISFCIILYFFMVSSKPLTI
                     DEPKEILPNKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDRDSPVAVFD
                     ACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDV
                     IAGSNYFSQIKEIEVQDPVSKTKIINTQAPFSYSYKGITYYFSNQNNYEEFKKDPTKY
                     VEENEAQFLIQRRNDVG"
     gene            4709..6001
                     /locus_tag="ACHDOB_000695"
     CDS             4709..6001
                     /locus_tag="ACHDOB_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3325633.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIELTGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIA
                     FIALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            5991..7109
                     /locus_tag="ACHDOB_000696"
     CDS             5991..7109
                     /locus_tag="ACHDOB_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3325634.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDTKLSKELKAYGANVMISPKQDENFISNAEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKTGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            7106..7759
                     /locus_tag="ACHDOB_000697"
     CDS             7106..7759
                     /locus_tag="ACHDOB_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325635.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            7756..8244
                     /locus_tag="ACHDOB_000698"
     CDS             7756..8244
                     /locus_tag="ACHDOB_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HFN3325636.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            8205..8708
                     /locus_tag="ACHDOB_000699"
     CDS             8205..8708
                     /locus_tag="ACHDOB_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HFN3325637.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKTQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(8718..9155)
                     /locus_tag="ACHDOB_000700"
     CDS             complement(8718..9155)
                     /locus_tag="ACHDOB_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HFN3325638.1"
                     /translation="MKKTILTILFLLTLTQAKEIQVYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIVWLLENKPKDVIGI
                     SAPGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(9435..9878)
                     /locus_tag="ACHDOB_000701"
     CDS             complement(9435..9878)
                     /locus_tag="ACHDOB_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325639.1"
                     /translation="MKKLGLALAALVALNVSAFAGVITIHDSNLVKVSGGDDTYAKIA
                     LDNAKEGMKNQFNTDNLEIYAIESIKKDDPEHYNVIQRGSFKVMKQEIAKGKTVCYNE
                     FLVVDRKTNWAAEWDIECDHLDRPIKLSNNVNCRSGISTRRYNFK"
     gene            complement(10053..10137)
                     /locus_tag="ACHDOB_000702"
     tRNA            complement(10053..10137)
                     /locus_tag="ACHDOB_000702"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10101..10103),aa:Leu,seq:tag)
     gene            complement(10143..10219)
                     /locus_tag="ACHDOB_000703"
     tRNA            complement(10143..10219)
                     /locus_tag="ACHDOB_000703"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10183..10185),aa:Arg,seq:tct)
     gene            complement(10234..10310)
                     /locus_tag="ACHDOB_000704"
     tRNA            complement(10234..10310)
                     /locus_tag="ACHDOB_000704"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10274..10276),aa:Arg,seq:tcg)
     gene            complement(10315..10391)
                     /locus_tag="ACHDOB_000705"
     tRNA            complement(10315..10391)
                     /locus_tag="ACHDOB_000705"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10355..10357),aa:His,seq:gtg)
     gene            complement(10416..10493)
                     /locus_tag="ACHDOB_000706"
     tRNA            complement(10416..10493)
                     /locus_tag="ACHDOB_000706"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10456..10458),aa:Pro,seq:tgg)
     gene            complement(10536..11384)
                     /locus_tag="ACHDOB_000707"
     CDS             complement(10536..11384)
                     /locus_tag="ACHDOB_000707"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HFN3325640.1"
                     /translation="MRFIFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIIPQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNAMKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(11384..12046)
                     /gene="cgpA"
                     /locus_tag="ACHDOB_000708"
     CDS             complement(11384..12046)
                     /gene="cgpA"
                     /locus_tag="ACHDOB_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HFN3325641.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSNLISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(12036..12239)
                     /locus_tag="ACHDOB_000709"
     CDS             complement(12036..12239)
                     /locus_tag="ACHDOB_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325642.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(12305..13549)
                     /gene="eno"
                     /locus_tag="ACHDOB_000710"
     CDS             complement(12305..13549)
                     /gene="eno"
                     /locus_tag="ACHDOB_000710"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000015 - phosphopyruvate hydratase
                     complex [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HFN3325643.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            complement(13549..14580)
                     /gene="recA"
                     /locus_tag="ACHDOB_000711"
     CDS             complement(13549..14580)
                     /gene="recA"
                     /locus_tag="ACHDOB_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HFN3325644.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            14686..15546
                     /locus_tag="ACHDOB_000712"
     CDS             14686..15546
                     /locus_tag="ACHDOB_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HFN3325645.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILEFDQSLCVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTYAVKIADANRKILAPMLME
                     RKLIRVNEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDYLI
                     PSEYEEARNS"
     gene            15558..15827
                     /gene="fliQ"
                     /locus_tag="ACHDOB_000713"
     CDS             15558..15827
                     /gene="fliQ"
                     /locus_tag="ACHDOB_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HFN3325646.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            15824..>16582
                     /gene="murB"
                     /locus_tag="ACHDOB_000714"
     CDS             15824..>16582
                     /gene="murB"
                     /locus_tag="ACHDOB_000714"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HFN3325647.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLISPK
                     PKNIGILGDGFDFIQILDQNKDFIHLRIGCKTKSSKMYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATFQGEILRENINFDYRFCPLNMPFFWAEFKLNFG
                     FDILKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGINLEN"
BASE COUNT         5634 a         2697 c         2585 g         5666 t
ORIGIN      
        1 taatataatc aaaaattaca acttaaaaag ctattgcaat tatataggag tttgctaatg
       61 ttacttaata caccttgtag gggaatagta gatacaaatt ttgaaagtaa aagaattaat
      121 ataacttcaa ctttaaaatt tcaagaaaaa aaagaaaaag tagaagctaa agctgagaaa
      181 gaagaagcaa ataaagacaa tagcgattct acaaacacag ataccaacaa aaaagataaa
      241 cttttggata tatctgctta atctaaaata tgctataatc atctccttga agaatacaca
      301 ataaatgatt ttttgatttt tattaagctt ttaaaacact aaaaaatgaa aaattaaaaa
      361 tacaaaaaca atatcccaaa gtgcatagct tagaagaaaa ccttgcgata cttaaaaaca
      421 acccatatta aatcacaaaa ataaaatata tttaaaaatt tattaaaata tatcttaaat
      481 ataattaata aaaaatatta tcgatacaaa agcttatttt ttagttctat ttaagatttt
      541 taatattata ctagccatta tttattttga taataaatat tatttttatc aaaaaccaag
      601 gataatgata atgaaaattt ttaaaattat atttttaatt ataagtattt ttttatcaag
      661 ctcagctttt gctagagtag atgattatat taatgaagca aatcttatca aagacatgct
      721 aaaacaaagc atagaaactt acaaaaaggg tgataatcta ggtgctaaaa agcttagcga
      781 agatgcgtat tttcaacatt ttgaaaatat ggaaggccct ataggaagaa acataggaag
      841 aaaagccatc accatggagc gtaaatttgt aaatttgcgt cgtatgtata aagatgaagc
      901 tcctttgaca caaattaatg ctttaattga tagtctttat tatgatcttg atgaagtagc
      961 ccctatttta caaaatggat atcgtttaaa agcagaagca agcgatacaa actatgataa
     1021 ggctaaagct gaaaaatcaa gcctagaagc caatgccaaa cgcgaagctg atgcagaagc
     1081 tttaatcgca caaatgatgg gcgtggataa aaaagattta gcacaaagtt ctttaaccac
     1141 ccaagcttct acacctgcaa acaacgacac aagcaaactt acagatgata atgcaagcgc
     1201 tgatttacaa gctgccgctg caatggacgc aagattgcaa tttatactag ataacatctc
     1261 taccaaattt tcacaggcag ctaatgcttt taaagaaaaa aactaccaag ctagtaaaga
     1321 ttttttaaat gatgccttat ttagtgatta tcgcaatacc aaagtagaaa ttttagtaaa
     1381 taaatttacc aaagcaggaa acgatcaaaa aattcaacaa gccatacgca cccttatacg
     1441 ccaaatcaac gatgcaaaaa tagatgaaaa aggcttaaga gatggcttag ataacataga
     1501 agaacaaatt tttgatgttt tcttacaaat tccaaattca gaactttcaa gtttgcaaat
     1561 ttcaggcttt aatgatgaaa caaaaggcaa agattatgcc aaagtttcta atgatatcaa
     1621 acttgcttta gatgaaattt taaaaaatta tgatggcttt agtgcttcta tagtagatga
     1681 tttacaagga atttatctag atatttttga agcaagcggt atggaaaata aaatcggtgc
     1741 tgtagatagt ggcttaaaac ttaaaataga aagtttattt tccaaaggtg tggcactgat
     1801 taaagcaagt gcagataaaa aagagcttga agctactttt aatgacttag aacaactcat
     1861 agcaagcagt gtggataaaa ttcaagattc tactccttat tcgctgttta tatgggcttt
     1921 aggtattatt ttgcgtgaag gcttggaagc tttgattatc gttgtagcca ttgtttctta
     1981 tcttgtgcaa agtggtaata aaaatcgtct aaatatcgcc tatagtgctc tttttacagg
     2041 agtgatttta agttttgtta ccgcttttgg agtttcttgg ctatttaaag aaaatgcagg
     2101 acaaagtaga gagcttatag agggtattac catgcttata gccgtattac tactctttta
     2161 tgtgggcttt tggttacttt caaacgcaca aaataaaaaa tggacaagct ttatcaaaca
     2221 aggtgctata gatgctatat caaacaatag tgcaaaaacc ctttggatta ccgtattttt
     2281 agctgtttat agagaaggtg cagaaactgt gcttttttat caagccttgc tttttgatgc
     2341 taaaacaagc actgatttta gtgctgtttt tggtgggctt ggacttggaa ttttaatact
     2401 tattgtttta tattttcttt taaaagcagg agccattcgc atacctgtaa aacaattttt
     2461 ctatatcact tcttacatta ttttttacat ggtttttgtt tttacaggca aaggcatagc
     2521 tgaactcata gaaggaaaag tcattattcc tagtcttata cctatgaatt ttgaaccgat
     2581 tttatggctt ggaatttatc cttactatga aaccttaatc cctcaattta tagttttgat
     2641 catgctaatt attggcattt taataacaaa acaaatttca aaaaaaggag taaaatcatg
     2701 ataaaaaaag ttttatcagt agttgctgca gctgcggtta ttagtacaaa tttatttgca
     2761 ggcgaagtgc caatcggcga tccaaaagaa cttaatggca tggaaatagc cgctgtttat
     2821 ttacaaccta ttgaaatgga accaagaggt attgatctag ctgcgtcttt agcagatatt
     2881 cacctagaag ctgacattca cgcacttaaa aacaatccaa atggttttcc agaaggtttt
     2941 tggatgcctt atttaaccat agcctatgaa cttaaaaata ccgacacagg tgcgattaaa
     3001 cgcggaactt tgatgcctat ggtggctgat gatggtcctc actatggcgc aaatatcgct
     3061 atggaaaaag ataaaaaagg tggctttggc gtaggaaatt atgaacttac tttttatatc
     3121 tcaaatccag aaaaacaagg ttttggacgc catgttgatg aagaaacagg cgtgggtaag
     3181 tggtttgaac cttttaaagt agattataaa ttcaaataca caggcacgcc aaaatgattt
     3241 tacactcgga ttttccgagt gtttaaatat ttttattttt attgaaaaat taaaataaca
     3301 atgtttaaag agtaaattat gagtatatat tttgtgcatt ttcttatcag tgttttaccg
     3361 ctaagtattt taatggcctt tatcactcct gataaaaaat atatttttaa aagtttttta
     3421 gtagtttttt tgggcttttt atttggatat tttgcttttt ttatcgcagc acaattttta
     3481 aaaaccgaaa atttaatctt taattttgat tttgttttta taggtttatt gctagtaagc
     3541 tttatatttt atttttggaa aaaaattgaa attttaaatt ttattttatt gggaatttta
     3601 agtttttgca ccgctttgca ttattatttt ttaagtcaag atttccctat ttttactagt
     3661 tctttaatcg atagcgaagg tataagttct ttaggtttta ttgctttagc cttgcttgtt
     3721 tgtattttga ttttcttctt tttaaaatgg caaaaaaatt ttaatcaaaa aacaagcttt
     3781 atgctgtttt tactgcttat ccttatagaa agcgataaag ctctagccaa tatcttgctt
     3841 actttaatgc gaaattccat catagaaact catacttttt tggtgagttt tgtaggaaaa
     3901 agtaattatt ttggtgtttt tggaatttat gtttatttaa ttttcatcac ttttttagca
     3961 ttcttaagcc taaaaattcg caaaaaaaat ataagcaaaa aacaaatttt agatataaat
     4021 tatcgcaaaa acgaagctaa aacaagtctt attaatcgct atttttccag tgtttttatc
     4081 tcctgtgtta taagtttttg tattatttta tactttttta tggtaagctc taagccttta
     4141 accatagatg agcctaaaga aattttaccc aataagaatg gcaaatttat ctttgatata
     4201 gctcttttaa gggacaacaa actccaccgc tttgcttata tcagtgctga aggtaaagtg
     4261 ataaggtttt ttcttatcaa taaaagagaa gatagggatt ctcctgtagc tgtttttgat
     4321 gcttgtatga tttgtggaga tatgggctat atcaaaaaag atggacaact catttgcatt
     4381 tcttgcaatg tgcgtatttt cttgcctagt gtaggcaaaa gcgggggttg caatcctatc
     4441 ccactcaaat acgaatacga tggtaaaaaa atcaccatag atgttaaaga tgtaatagca
     4501 ggatctaatt attttagtca aatcaaagaa attgaagtgc aagatcctgt atcaaaaaca
     4561 aaaattataa acacccaagc tcctttttct tatagctata aagggattac ttattatttt
     4621 tcaaatcaaa acaactatga agaatttaaa aaagatccta caaaatatgt agaagaaaac
     4681 gaagcccaat ttttaatcca aaggagaaat gatgttggct aaaatgattt ttaactctat
     4741 atttaaaaac aaaattcaaa aatttttagc ctttcttact tgttttttag ccacgctttt
     4801 gctctctact atgctaaata ttaccctaag tataggcgat gaagtaacta aacaactcaa
     4861 aagctatggc tctaatatcc ttgttttacc caaaggctca agtcttagta tagaaatagg
     4921 taatgaactt tatgaaccct taaaaaacaa aaactaccta gaagaaaaaa atttatatat
     4981 gattaaagac atttattggc gtaacaacat caccgcactt gctccttttt tagaaggtaa
     5041 aatcacaatt gaaaactccc agcaaaaagc acttatttat ggcacttatt ttcaaaaagc
     5101 cataaaaatt aaagatgatg atgattttat cacaggtata aaaagtcttt atccttattt
     5161 agcagtgcaa ggagaatggg caaaagatga tagcaatgaa atcatgctag gcgaagactt
     5221 tgctaaaaac aataaactaa aattaggaga tactatcgaa ctcacaggag aaaacaatca
     5281 aagcaaagaa gcaaaaatcg taggcatttt acttcatgcc aatcctaaaa tgtcaaataa
     5341 aatcatcgct cctttaaatt tagctcaaga tttactcaac aaacaagggc tttactcaag
     5401 tgcagaagta agagctttta ccatacctga atcagccctt tctgaaaaag tgcgtcgcat
     5461 gggcgaagaa aaattagatc agttagaata tgacaaatgg tattgctcag cttatgtagg
     5521 ctcaatcgct agtcaaatta gcgatggctt accaggtgct gatgcaaaag ctctaaatgc
     5581 tataagcgat gctcaaagct tggtggttaa aaagatccaa tccttaatgg gcattacttg
     5641 tattatttgt cttattgttg caagtattgc gatttcaagt ctgatgagtt ctgaaattca
     5701 tcgtagaaaa aaagaaatag gacttttaaa agtgcttggt gctaatactt ttcaaattta
     5761 tctcatcttt gctagtgaaa atttaatcgt agctttattt gctgctttat ttggctttat
     5821 ttttggcaca gcactttctc aaatcatcag tcttagtatt tttggatatt ttattgatat
     5881 agcctttata gctttacctt taagctttat ttttgcagga cttattgcct tactaggttg
     5941 cttgcttcct atcaaaaata tcacacaact ttcagctgca ggagtgcttt atggtagata
     6001 agtttttcct taatgagctt tttaaaagca ttagcttttc ttatcaaaga ctttttataa
     6061 tagttttaag tgtttttata ggagcactta cttgctcagc ttttttaaat atttattttg
     6121 atattgacac caaactttct aaagaattaa aagcttatgg agcaaatgta atgataagtc
     6181 ctaagcagga tgaaaatttt atctccaatg ctgagtatga aaaaataaaa gaaaatttaa
     6241 aggctagggc tttaactcct tttttgtatg attttttaaa tttaggcagt acaagcggag
     6301 tggttttagg cactgatttt agggctttaa aaatcaccaa acctttttta gaagttaaag
     6361 aaggaagctt ttccctaaat gattttgatg aaaattcagc ctttttaggg gttaatttag
     6421 ccaagcaact gggcctaaaa acaggcaatg aacttcaaat ttacaatcca aacaatggaa
     6481 aaagcataaa acttaccata aaaggcatac tttcaagcaa tgatgaattt gatagcattg
     6541 ttttagctcc tttaagcgtg gtgcaaaatt taagcgatag agccggtatt aactatgcta
     6601 atgctgtagt ttatggaaat tttgatgaag ttaaagccaa aacacaagca atcagcaatg
     6661 aattcatcga tgcaaaacct atatcttcag tatccttaag tgaaggttta gtgcttggaa
     6721 aaatcaaagc tttaatgttt ttaatcatac ttgtagtatt gatcatagtc actactagcg
     6781 ttaatacgac cttaagctct attatatttt ctcgcaaaaa agaaatcgca ctgcgtttag
     6841 ccttgggtgc gaaaaaaagt gaaattttta aactttttgc tagtgaatgc tttatagtaa
     6901 gtttttttgc tagtttaatc ggagcttttt gtgggatatt tttagccaat gtctttggtt
     6961 atttgatttt taattctagt attgatttta gatttatagc tgtttttata gccttaatca
     7021 tttctttgat ttttgccttt ttggctgcat tttttcctat aaaaagagca ttaaaaatca
     7081 atgtgtgtga aaatttgaaa ggtgaataat gaaaaaagaa cttattaaaa taaacaactt
     7141 aaataaagaa tttggcaaag ttaaagcctt aaacaatatc aacttaagcg tctatgaagg
     7201 agaatggctt gccatcatgg gtccatcagg aagtggaaaa tcaacgcttt taaacatact
     7261 atcactcatg gacactccaa gctctgggga gtatatctta gacaatgaaa acctagagca
     7321 aatggatgag gagcaaaaaa tcaccttacg tcgtgaaaaa atagggcttg tctttcaaca
     7381 atttcatctt atcccctatc ttaacgcctt agaaaatgtt atgctctctc agtattatca
     7441 ctcaagcgta gatgaagaag atgctaaaat ggttcttgaa aaagtaggac tttcgcacag
     7501 actcactcat ttacctagcc aattaagtgg tggagaacaa caaagagttt gcatagcaag
     7561 agctttgatc aacaacccag agcttttact cgcagatgaa cccacaggga atttagatga
     7621 agccaatgaa caaatcgttc ttcaaacctt gcaaaaatta aaaaatgaag gcaaaaccat
     7681 agttttaatc acacacaatc ctgatttagc caaattcgca gatcgaaccc ttatcttaca
     7741 acatggggtg ttaaaatgaa aaaaagcctt ttaatcttaa gcattttgtt cttgctcaat
     7801 gcttgttctt ttgaaaattc aaaagatact ggaaaagttg gagaaaaaag cgctgaaatt
     7861 tcagctaaag ataccttagg aaaagctgta aaacttgctg atgataatac aagtttaaaa
     7921 gttttggtct tttttcaaaa tggctgccct tcttgcttaa aagaactccc ttctttagat
     7981 gaattcatac aaaatcaccc caataaaatc agtgtttatg ctataaattc catcgataat
     8041 gccaatgtgg ttaaggtttt agccgaacaa tttgacttta aaaatgtaaa agttttaaaa
     8101 gacgatctta aaatcaccaa tgatcgttat gctgtgtttg caacccctac taccatcatc
     8161 attaaagatg ggatgataaa agatagaatt ttaggagaaa aaccatggga atttttcgaa
     8221 tccaagctta tttctttgct ttaattatag ctttattttt tgtagcttgt gatagtggag
     8281 aaaattttaa agctttaaat agtgataaaa cctataattt tgcctacaat ggttttgaaa
     8341 aaagcctaaa actaaatgat aaaacacaaa attttgcctt agtatttttc acaaaagatt
     8401 gtggagtttg taaagaacaa attcctattt tgcagaattt ggctaaaaat tatgatttta
     8461 atatctttgt ggttttaggc gatgcaaatg atgcaaatga tgcaaaagct tgggctgatg
     8521 aaaaaggttt atctaattta gcaatgtttt atgaaaaaag agcagctaaa tacctttcaa
     8581 gtgccattgg ggaaatatat ggagtgcctg tgcttagttt tttcaaagaa ggaaaaatgg
     8641 atgaaaaatt cataggctta actccttata gcatacttga aaaagaaatc aaaaaagtaa
     8701 aaagctaaaa atttacttta aagcttttta tctcctataa aatatccata aagctcatag
     8761 cttccatctt ttttcatcaa aattacagga tatttttcac tataaccttg ttccattcct
     8821 gggcttcctt gcggcatgcc aggagctgaa attcctataa catctttagg cttgttttca
     8881 agcaaccata ctatggcact ttcaggaaca tgcccttcaa tagcatagcc ttcgatcaca
     8941 cctgtatggc aactttgata ctcatctttt atacccattt tttctttgat tttaagaaaa
     9001 tcattggttt tatgaacgct aacctcataa cccttagctt tcatataatc agcccaaaga
     9061 tcacaacagc cacaagtagg actttcataa acttgtattt ccttagcctg cgtaagagtg
     9121 agtaaaaaaa gaatagttaa aattgttttt ttcataatcg ctatcctaag taaaaaatat
     9181 ataataatac ttttataaag ttaatatcat cacattttta acactaaaaa tgaatttaca
     9241 aaaatttaat caagaaaaga tttttaatga gtgctgattt tgtctttaca gcaaagatat
     9301 aaaagataaa acgatttaaa aaactagaaa tttttaactt aaaaagctta aaatttagat
     9361 atattttata ctatgttttt tatagtcaaa acctttatgg tgtgaaagct ctattatttt
     9421 agagctttca agtattattt gaaattatag cgcctcgtag agataccaga acgacaatta
     9481 acattattgc ttaattttat aggtctatca agatgatcac attcaatatc ccattcagca
     9541 gcccaatttg tttttctatc tacaactaag aattcattat aacaaacagt ctttcctttt
     9601 gctatttctt gtttcattac tttaaaactg cccctttgaa taacattata gtgttctgga
     9661 tcatctttct tgatactttc tatagcgtaa atctctaagt tatcagtgtt aaattgattt
     9721 ttcattcctt ctttagcgtt atctaaagct atttttgcat aggtatcatc tcctcctgat
     9781 actttaacta aattagaatc atgtatagtg ataacccctg caaatgctga cacatttaaa
     9841 gcaactaaag ctgccaaagc taaacctaat tttttcattt tatctccttg aattgaattt
     9901 tgtatatttt aattattttt caaatctttt gcaagataat ttttaaattt atctaaatta
     9961 aatttgcatt ttatctaaca atcataagaa attttaaaat gaaataaaaa tttatgagaa
    10021 atcaactctt gtttgaaaat gataaaagta agtggtgcgg atgaaaggac ttgaaccttc
    10081 acgcattgct gcaccagatc ctaagtctgg cgtgtctgcc aatttcacca catccgctaa
    10141 agtggtacgc ccaagaggat tcgaacctct gacctacggc ttagaaggcc gttgctctat
    10201 ccagctgagc tatgaacgca tataaaatct tggtggtgcg cccgatagga atcgaaccca
    10261 taacctacag atccgaagtc tgtcgctcta tccagttgag ctacgagcgc ttagtggggt
    10321 gagtgatggg aattgaaccc acgaccctca ggaccacaat ctgatgctct aaccgactga
    10381 gctacactca ccattttgta taaatttata aaaaatggtc ggggtgaaag gattcgaacc
    10441 ttcggcccct tggtcccaaa ccaagtgcgc taaccagact gcgctacacc ccgaataaat
    10501 aaaaggaaat attttatcac aaaataattt taaagtcaag gattttcatc tcttattctt
    10561 aaaaaaaccg gaaagcgagg taaggaattt ttggtcaatc cattaaattt ataagtcaca
    10621 atactaccaa tttttggagg attttttcta tcttcatctt ttaaaccact gcctatttta
    10681 atgatttgtc cattaggcat tttacaaagt aaggcaccta cttgattttc aaatttaccc
    10741 ttacccttgc gaaatcctac caactcacat tctgcatcat catagggttt taatttcata
    10801 gcatttttac ttctgccttt ttcataagga cttaaatttt tgcgtataac aataccttca
    10861 ccttgatttt ttataatgct ttcgtaaaat tgatttaaat tattttgatt ttcaactgga
    10921 atttgaggaa taatttttat ataggcacta ggatattttt gtaaatactc ttctaaaaca
    10981 gccaaacgat ttttaagagt gcaagtagaa atttgaaatt cttcgcaagc atttggcaca
    11041 tcaaaaatat tataagttac ttccttccat aaggtcaaat tgctatcgcc actacgaatt
    11101 aaagctgaaa tttcatcaaa tttatttctt gctatccaaa gctcaccatc aatagcaaaa
    11161 ggagggaaat tttttgtaaa aaagtcagga gtttttattt tgtaattttg gcgagttttt
    11221 agatatttcc catcccaaat tccacgcacc ccatcaagtt tttcgctcat caaataagca
    11281 ttaaaatctt tagaattaaa atcttgctta tcgaatttgc taagaagtaa aatttcatta
    11341 gcaaaaacta aacaagcaca acatattaaa aaaataaatc tcatcaaagc agattaatca
    11401 tatatccagt tgcatctttt tgaatattat aattataagt tccatcaaga tatattacaa
    11461 gtcgataata tcctttatga gatccaaagt ctatgcgttt aaaaatagaa ttactaaggc
    11521 gtatgttttt tgtagggcta atcaaattag atctaaaatc tataacgatt ttacttggat
    11581 ttcctactga aaaatctgtg atcatttcat cactagtgtt aagttttatt ttgtttttat
    11641 aaaccgcgta agaaataaaa tcataaatct ttgcaacctg taaaggtatt tcaacattgg
    11701 ctgttgagtt tgattcttgt ttagagctat ttttttcagg tatagtaact gaaacatcaa
    11761 gtacttttga aggatcaggg cttttaaatc ttgatatagt ataagtatcg tgccaatcaa
    11821 tacttttatt aacatctaaa tcgatcttat cttcacttcc gtctaaattg atataattaa
    11881 aagtgatgct ttttaaaatt cttgcactag aattaaattt aacttcctct ttttgaaatt
    11941 caggtggagc aaccaaggtt atattttgat ctgtcttgaa aggattttca tcagcatata
    12001 aaagagaggt aaaaataaaa aatattgcca aaattctagt tttcatttgg gtataatcct
    12061 tttaattcaa aataatcttt ttgtgcttta gcattttgtt ctttgagcaa aataatcttt
    12121 ttattaagct cttctttggt attttctaag cttaataaag tatctaaaga atactgccca
    12181 aaaaacatat tgccaaaata aatcgctcca attacaacaa gaaaagccca aaaaatcatt
    12241 tttataacat gggtataaaa actttttttt cttgtgcttt cgtcgtattc tttaagtaaa
    12301 tcgctcagag cttttctcct aagtattcat cgctttcaag ttcaatttca agcaagcgat
    12361 tgtattttgc ggttctttca cctcttgcta gggctcctgt tttgatttgt cctgtattta
    12421 aagccacagc aaaatccgct ataaaagcat cttcactttc gccgcttcta tgactcatca
    12481 cacatttata gttatttctt tgcgctaaac gcacagttct catagtttgg gtaatagttc
    12541 cgatttgatt tggtttaata agcacagcat ttgccatttt tttgatgata ccttctctta
    12601 aaatatcttc attggttaca aacaaatcat cgcctacaag ctgaatttta ttgcccaatt
    12661 tttcagtaag cttgatccaa ccttcaaagt cattttcagc taagccatct tcgatactgc
    12721 aaattggata ttttgcacaa agttctacat agcgttcgat caaatcctcg cttgaaaaag
    12781 ccttgccttc catgtgatat ttgccatctt tgaaaaattc tgtacttgcc acatcaagag
    12841 cgatttttac acgattttca taacctgctt ttttgataca agtcattaaa aggtcgatag
    12901 gttctgtgtt gttagctaaa tttggagcaa aaccaccttc atcacctaaa gctgtagaat
    12961 gtccagaatt tgcgagttct ttttttaata tcgcataaat ttcacaaact gaacgcaaag
    13021 cctctttaaa gctagtaaaa ccaaaaggca taatcataaa ttcttgaaaa tctacattgt
    13081 tgtttgcatg agcaccgcca tttatgatat tacacattgg cacgggtaaa atgctcgcat
    13141 ttgcaccacc taagtaacga tacaaaggca ttcccaaagc agccgcagcc gcacgagctg
    13201 ttgccatgga tacgcctaaa gtcgcatttg cacctaaatt tgagtaatta tttgttccat
    13261 caagctcacg caaagtatca tcaagttgag tttgattaaa agcatctagt cctaaaattt
    13321 catctgcaat ggtctcattg acatttgcaa cagcttttaa aacgcctttt ccgccaaatc
    13381 tttcatcatt atcacgcaat tctaaagctt cttttgaacc tgtacttgca ccacttggaa
    13441 ctatggccgc acctacactt ccatcgctta gcgtaacttc ggcttttacg gttggatttc
    13501 ctctactatc aagaacttca taggctctaa catcttcaat tactaacatt attcttctcc
    13561 ttcgtcatct tcgctaccgc tgatcatacc ttctattccc atagaatttt gaattgcttt
    13621 tgtgatttca tctgcaattt cagggttttc ttttaagaaa gcttttgagt tttctctacc
    13681 ttgtccaagt tttttatctt tataagaaaa ccacgcacca cttttatcta cgatatcaag
    13741 ttttacacca taatcgatca attcaccttc acgacttaaa ccctctccaa acatcacatc
    13801 aaattcagct tgtctgaatg gaggagcaac tttattttta actactttta ctttaacgcg
    13861 gtttcctata ggttcttcgt tttgttttaa ggttgctact tttctaacat ctaaacgcac
    13921 agaagcataa aattttaatg catttccacc tgttgtggtt tcaggagtac cataacccat
    13981 agcaccgatt ttcatacgaa tttggttgat gaaaattact gtggtattca ttttatgaac
    14041 tatacctgta agttttctta gagcttgaga cataagtctt gcttgaagtc ctacatgttg
    14101 atcgcccata tcgccttcaa tttctgcttt tggggtaagt gctgcaacgc tatctactac
    14161 aataagatct actgcaccac ttcttgctat agtttctaca atttctaagg cttgctctcc
    14221 aaaatcaggt tgagaaacat acaaatcatc tgtatttaca cctaaatttt tagcatattt
    14281 tacatcaaga gcgtgctctg catcaataaa agcacaaact ccacctgctt tttggcattc
    14341 tgcgataatg tgtagagtta gagtggtttt acctgaactt tcaggcccat aaatttctat
    14401 aattcttcct tttggaacac cgcctatacc taaagcaaga tcaagtccaa ctgaacctgt
    14461 gcctatgcta tcgatttgct cgacttcttt atcccctagt cttaagatag tgccttttcc
    14521 aaaggtttta tctaaacttt ttagggcagc gtctagagat tttcttttat tatcatccat
    14581 aactttcctt aaaaattcta aatttttagt tagaattcta acaaaataaa attaaataat
    14641 gatttatttt gctagaatta aagcaaagat ttaaaggaag catagatgaa aaaaattact
    14701 attgcacatt ctcctgatgc tgatgatatt tttatgtata tggctattaa atttgggtgg
    14761 atagggaatg attttgctta tgaaaataca gctttagata tacaaacttt aaatgaattt
    14821 gccttgaaaa atgaatttga tgctacggct atttcttttg ggctttatcc tttaatcgct
    14881 tctgagtatg cgcttttacg cacagcagtg agttttggtg aaggttatgg gccaaaactc
    14941 atcaagaaaa aagacacgca tttaaaaaga aattttaaag tcgctttgag tggagcaaat
    15001 accaccaatg ctttgatttt tcgtatgaaa taccctgaag caagaattat ttataagaat
    15061 tttttagaca ttgaaaatgc agttttaagt ggcgaagtag atgcaggagt tttaatccat
    15121 gaaagcattt tagaatttga tcaaagtctt tgcgtggaag cagaactttg ggatatatgg
    15181 cttgaatttg ctaaagaaaa tttgcctttg cctttaggtg gaatggcttt gcgtcgctct
    15241 ttgcctttaa gcgatgcgat taagattgaa agagatttaa cctatgctgt aaaaattgcc
    15301 gatgcaaatc gtaaaatttt agcccccatg cttatggaaa gaaaacttat ccgtgttaat
    15361 gaagaaaaac ttgatactta tcttaattta tatgccaata aaaactctat tagcatgaat
    15421 caaactcaac ttttagctgt agatacgctt tttaaactag gatatgatta taaattttat
    15481 gataaaatca tacatgtaaa tgattatctt atccctagcg aatacgaaga agctagaaat
    15541 tcttaaaaag gataaaaatg gacgaaagta ccttagttgc tcttggagtg caaaccttta
    15601 aaatcacact tttgctttcc ttgcctatgc ttttagcagg gcttattgca gggcttgtaa
    15661 tcagtatttt tcaagcaact acacagatta acgaaatgac actttctttt gttcctaaaa
    15721 tcatcttggt tgtggttatt ttaatctttt taatgccttg gatgactaca actatgattg
    15781 attttactga gaatatacta aatcaaattc caacttttat caaatgatca ttgattttaa
    15841 aaaatactct tctgtacgta taggaaatga atttgaagtt ttagttttgg atcaaatttg
    15901 tgattttgat ggttttttaa taggtggtgc aaacaacctt ttaattagcc caaaacctaa
    15961 aaatatagga atattaggag atggttttga ttttatacaa attttagatc aaaataaaga
    16021 ttttatacat cttcgcatag gctgcaaaac aaaatcaagc aaaatgtatc gctttgccaa
    16081 agaaaataat cttaagggtt ttgagtattt aagcaaaatt cctggcacac ttggtgggct
    16141 tttgaaaatg aatgcaggac ttaaaggaga gtgtatcagt caaaatttaa ttaaaattgc
    16201 cacttttcaa ggcgaaattc taagagaaaa tataaatttt gattatcgtt tttgtccttt
    16261 aaatatgcct tttttttggg ctgaatttaa attaaatttc ggttttgata tccttaaaga
    16321 tgaagcttta aaaaatgcaa gaagcaacca acctagtgga gcaagctttg gctctatctt
    16381 taaaaatcca aaaaacgact ttgcaggacg tttaatcgaa gctgtaggac ttaaaggatt
    16441 tagcaaggga gatgctatgt taagcgataa acacgcaaat tttttaatca ataaaaaaaa
    16501 tgcaagtttt gaagatgcgt tttttcttat cgaattggct agaaaaaaag tctttgaaga
    16561 atttggcata aacttagaaa at
//
LOCUS       DAZAND010000028        16457 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.028, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000028 DAZAND010000000
VERSION     DAZAND010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16457
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.028"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..315
                     /locus_tag="ACHDOB_000715"
     CDS             <1..315
                     /locus_tag="ACHDOB_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325648.1"
                     /translation="FVLKIKIKIIVLFLCFIMVLGSYFLKEQRNNALKSEQEQILLWM
                     NNFDFLKDNNLSLIQKEKDLFEKDLKDLREIFKKNAFEIGIWWFSKEKEDLEKRINES
                     LK"
     gene            312..1073
                     /gene="tlyA"
                     /locus_tag="ACHDOB_000716"
     CDS             312..1073
                     /gene="tlyA"
                     /locus_tag="ACHDOB_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HFN3325649.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEVLLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLTDGLKLDLLSEIYVSRAALKLKNFLEENDIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGNNQLHLSLRTNEKIILHENTDLRAFKSEEKFELIT
                     CDVSFISLINLLYYIDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKECAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            1039..1893
                     /gene="ribF"
                     /locus_tag="ACHDOB_000717"
     CDS             1039..1893
                     /gene="ribF"
                     /locus_tag="ACHDOB_000717"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HFN3325650.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKCLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGKDFLSFLKKEFVNLKFIVVGYDF
                     SFGKNRAYNAKDIEFLSGIKTIIVDEFSIGGIGVHASLIKDFLSKANLQKAKEFLGRD
                     YSIKGKMIKGQGLGSKELFATINLDCKGYFLPQNGVYATLLKSQRKIYKSVSFLGIRS
                     SDENFAIESHILEELGEKFTQGEFFELEFISFLRENQKFQDLKKLKNQIAKDIEQAKE
                     LLRKNDER"
     gene            1880..2590
                     /gene="cmoA"
                     /locus_tag="ACHDOB_000718"
     CDS             1880..2590
                     /gene="cmoA"
                     /locus_tag="ACHDOB_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HFN3325651.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPINASICDLGCSSANFLIFLANLRKDFKLFGVDNSASMVEVAKSKAKAYGL
                     DISFFETNLCEFDFFVCDVFVANYTMQFIRPPKRQELLDKIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(2580..2801)
                     /locus_tag="ACHDOB_000719"
     CDS             complement(2580..2801)
                     /locus_tag="ACHDOB_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HFN3325652.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYRVGFPKDEWEDENISNP"
     gene            complement(2792..3232)
                     /locus_tag="ACHDOB_000720"
     CDS             complement(2792..3232)
                     /locus_tag="ACHDOB_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HFN3325653.1"
                     /translation="MRRLSILLTILIVINITACDSKTENYYKNHPSEAKEKAKECKES
                     GTLSEDCINALKVGVKPTNEESKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPITETPSEIYPSKTTENNQSSIFSDDVNITQEKLP"
     gene            complement(3291..3923)
                     /locus_tag="ACHDOB_000721"
     CDS             complement(3291..3923)
                     /locus_tag="ACHDOB_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HFN3325654.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            complement(3934..4584)
                     /locus_tag="ACHDOB_000722"
     CDS             complement(3934..4584)
                     /locus_tag="ACHDOB_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HFN3325655.1"
                     /translation="MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFEDDTNIPKKYRTTWSDYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
                     LVLYDKEPLYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF"
     gene            complement(4581..5207)
                     /gene="nth"
                     /locus_tag="ACHDOB_000723"
     CDS             complement(4581..5207)
                     /gene="nth"
                     /locus_tag="ACHDOB_000723"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HFN3325656.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLEEEKLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTGIFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            5288..6109
                     /gene="peb4"
                     /locus_tag="ACHDOB_000724"
     CDS             5288..6109
                     /gene="peb4"
                     /locus_tag="ACHDOB_000724"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HFN3325657.1"
                     /translation="MKKFSLVAAALIAGVALNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGSKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            6109..7173
                     /gene="fbaA"
                     /locus_tag="ACHDOB_000725"
     CDS             6109..7173
                     /gene="fbaA"
                     /locus_tag="ACHDOB_000725"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HFN3325658.1"
                     /translation="MGVLDIVKAGVISGDELNKVYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKFD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKDAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMVKRLEIAFEDLNCINKN"
     gene            7268..8710
                     /locus_tag="ACHDOB_000726"
     CDS             7268..8710
                     /locus_tag="ACHDOB_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HFN3325659.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKVERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            8707..9660
                     /locus_tag="ACHDOB_000727"
     CDS             8707..9660
                     /locus_tag="ACHDOB_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HFN3325660.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNLTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            9647..10522
                     /locus_tag="ACHDOB_000728"
     CDS             9647..10522
                     /locus_tag="ACHDOB_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HFN3325661.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFISYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFAFSLCKKDDIFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKLV"
     gene            complement(10514..11857)
                     /locus_tag="ACHDOB_000729"
     CDS             complement(10514..11857)
                     /locus_tag="ACHDOB_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFN3325662.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(11908..12576)
                     /locus_tag="ACHDOB_000730"
     CDS             complement(11908..12576)
                     /locus_tag="ACHDOB_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HFN3325663.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGILDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQIS
                     NAILQVSEPRKPCVKISKIHNNSNFTHEIFKTGLSGWYYKVLQVGQIRKYENIKILEK
                     NSTSLSVFELNQLFYSPHQALRQNPILLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            complement(12573..14276)
                     /gene="dsbD"
                     /locus_tag="ACHDOB_000731"
     CDS             complement(12573..14276)
                     /gene="dsbD"
                     /locus_tag="ACHDOB_000731"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047134 - protein-disulfide reductase
                     (NAD(P)H) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HFN3325664.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLEHFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKTQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVLGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKSALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKLE
                     P"
     gene            14371..15252
                     /gene="ppk2"
                     /locus_tag="ACHDOB_000732"
     CDS             14371..15252
                     /gene="ppk2"
                     /locus_tag="ACHDOB_000732"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HFN3325665.1"
                     /translation="MQENNSPKTQAVVKKNEIYVSVKRKKSTIEYEKDLKNLQIELLK
                     FQNHVKAKGLKVLILIEGRDAAGKGGAIKRLIEHLNPRGCRVVALEKPSDVEKTQWYF
                     QRYIAHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSDII
                     FFKFYFSVSKDEQKKRFEKRRSDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVEYPNKKTGDFSKIDAKLVRSGEEEIRKMEAN
                     LEKLDSKKADEKIKDLD"
     gene            15261..16451
                     /locus_tag="ACHDOB_000733"
     CDS             15261..16451
                     /locus_tag="ACHDOB_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HFN3325666.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILATIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGSLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMAT
                     QFVNNIQSVVSRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAALIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
BASE COUNT         6009 a         2082 c         2799 g         5567 t
ORIGIN      
        1 tttgttttga aaataaagat aaaaataatt gttttatttt tgtgttttat catggtttta
       61 ggaagttatt ttttaaaaga gcaaagaaat aatgccttaa aatccgaaca agaacaaata
      121 cttttatgga tgaataattt tgatttttta aaagataata acttaagttt aattcaaaaa
      181 gaaaaagatc tttttgaaaa agatcttaaa gatcttagag aaatttttaa aaaaaatgct
      241 tttgaaatag gcatttggtg gttttctaaa gaaaaagaag acttggaaaa aagaataaat
      301 gagagtttaa aatgagattt gatttttttg tttcaaagcg tttaaatatc agtagaaata
      361 aagctttaga gcttatagaa aatgaagagg ttttgcttaa tggtaaaagt tttaaagctt
      421 cttttgatgt gaaaaatttt ttagaaaatt taaaaaaaac gcaagattta aatcctgaag
      481 atatactttt aactgatggg ttaaaattgg atcttttaag tgaaatttat gtttcaaggg
      541 cggctttaaa attaaaaaat tttttagaag aaaatgatat tgaaataaaa cataaaaatt
      601 gtcttgatat aggatctagt acgggtggtt ttgtgcaaat tttacttgaa aatcaggctt
      661 taaaaatcac tgctcttgat gtaggtaaca atcaactcca tctaagttta agaacaaatg
      721 aaaaaattat cttgcatgaa aatacagatc tcagagcctt taaaagtgaa gaaaaatttg
      781 aacttattac ttgtgatgtg agttttattt ctcttattaa tttactttat tatatcgata
      841 atttagcttt aaaggaaatt atcttacttt ttaagcctca gtttgaagta gggaaaaata
      901 tcaaaagaga taaaaagggt gttttaaaag atgataaggc aatcttaaag gcaagaatgg
      961 attttgaaaa agaatgtgct aaattgggtt ggcttttaaa aaatacgcaa aaatcaagca
     1021 ttaaaggaaa ggaaggtaat gttgaatatt tttactacta tatcaaaaat taatattact
     1081 tctttagcca taggttgttt tgatggtatg catttaggac atctaaagct tgtaaaatgt
     1141 ttagatgaga atggggcttt gttagttatt aataaattta agggtcaatt tctttgttca
     1201 aatcgtcaaa aagaagaaat ttcaggaaaa aaagttatag aagtggattt tgaaagtata
     1261 aaatctttag atggtaaaga ttttttaagc tttttgaaaa aagaatttgt caatttgaaa
     1321 tttatagtag tgggatatga tttttctttc gggaaaaata gggcttataa tgctaaagat
     1381 attgagtttt taagtgggat aaaaactata atagttgatg aatttagcat aggcggaata
     1441 ggtgttcatg caagtttaat taaggatttt ttatcaaaag caaatttgca aaaagcaaaa
     1501 gaatttttag gaagagatta tagtatcaaa gggaagatga ttaaaggaca aggtttgggc
     1561 tctaaagaac tttttgcgac tataaattta gattgtaaag gttatttttt acctcaaaat
     1621 ggtgtttatg ctactttgtt aaaaagtcaa agaaaaattt ataaaagtgt gagtttttta
     1681 ggtataaggt caagcgatga aaattttgct atagaaagtc atattttaga agaattgggt
     1741 gaaaaattca cacaagggga gtttttcgaa ctcgagttta tatcttttct aagagagaat
     1801 caaaaatttc aagatctaaa aaaacttaaa aatcaaattg ccaaagacat agagcaagct
     1861 aaagaattat taaggaaaaa tgatgaaaga tgaacttttt aaacaaagcc ctaaaaaaca
     1921 atttgaattt gataaaagcg tggctagtgt ttttgatgat atgatcaatc gttctgtgcc
     1981 attttataga gaaaatttag aactttgtgg caatttattg gctaaaattt tacctataaa
     2041 cgcaagtatt tgtgatttgg gctgctcaag tgctaatttt ttgatttttt tggcaaatct
     2101 aagaaaggat tttaaacttt ttggcgtgga taattctgct tctatggttg aagttgcaaa
     2161 gtcaaaagct aaagcttatg ggcttgatat aagttttttt gaaactaatt tatgtgaatt
     2221 tgattttttt gtttgcgatg tttttgtggc aaattatacc atgcagttta ttcgccctcc
     2281 taaaagacaa gaattacttg ataaaattta taaaaattta aactctaaag gcattttgat
     2341 tatgagtgaa aaaatccttt atgaagatgc ttttttgtct aaaaatatca tagaacttta
     2401 tgcagattat aaagaaaaac aaggttattc taaatttgaa attgcagcca aaagagaagc
     2461 tttagaaaat gttttaattc cttatagtca aaaagaaaat ttaaacatgc tagaaaaggc
     2521 aggttttaag aaaatagaaa gtatttttaa atgggcaaat tttgaaactt tcatagcttt
     2581 taaggattag aaatattttc atcttcccat tcatcttttg gaaaacctac cctatacgca
     2641 ttaacacaat cttgactgat gatagctttg tgtctgcatt ctaaacttct tttttttgct
     2701 tcttcggggt gattttgata atattctaca cttttggttt gttcgcatgc tgcaaaaaat
     2761 ataccaataa ggcttaaaaa aagagttatt ttcatggtaa tttttcctgt gttatattaa
     2821 catcatcgct aaagatagaa ctttgattgt tttctgttgt tttggaagga taaatttcag
     2881 aaggtgtttc tgttataggt ggtattataa tactttcatt attttctgaa ctttggttaa
     2941 tatcttttgt ggttttttct ttttttaaat cattttgttt taaagcttct aatatctgat
     3001 tatcagattt ttttggtgtg tttggactgt atttactctc ttcatttgtt ggcttaacac
     3061 caacttttaa tgcattaata caatcttcgc taagagttcc gctttctttg cattctttcg
     3121 ctttttcttt tgcttcacta ggatgatttt tgtagtaatt ttctgttttg ctatcgcaag
     3181 ctgttatatt aataactatt aaaatcgtaa gtaaaatact tagtcttcgc atttatcaat
     3241 ctcctaaaat tttttaatat cttagcaaac ttgtataaag caacgataaa ttatttttct
     3301 tcattgtaag aaaaaatagg taaagaccat tgatatttga tagctaaaag ccttgcaaaa
     3361 actcctataa aaagagttaa aagtgtgcaa actagagcat taagctcaag ccaaattatt
     3421 agagaataat agattgctcc tgcaattatg gcaattcctg cataaatttc tttttgaaac
     3481 accaagggga ttctcataca taaaatatct cttaaaattc caccaaaaac accggtgatt
     3541 acagcagcag caacggctat gataaagcca tggttttgat ctatggctat ttgagctcca
     3601 agtatgctaa aaacaacaag tcctatagca tcaagagtta gaaataaagt ttcaagtttg
     3661 gttactacgc gcggaatttt tgtggctaca agggcgcaaa aacagattaa aataatatat
     3721 tcaggatgtt taacccaagt taaaggataa tgtcctaaaa gcacatctct tatgcttccg
     3781 cctccaattg ctgttacgag agcaataaaa ataactccaa aaagatccat tttatggcgt
     3841 cctgcagcta aagcccctgt cattccttct gcggaaatac ctatgatata aagagtggtt
     3901 atcgtaagag catttatctc cataatttat accttaaaat ttatcacaat ttatttgata
     3961 ctgtttaata ttttcatcat ttacttcatg gtttggtact tgatagcatt ctttaaattt
     4021 cggagtttta ataattttta cataaaaact tggtatagca atacggtttt taatgtatag
     4081 tggttcttta tcgtaaagta ctaaatttaa aacttcgata ctttgaaatt tgaaagccaa
     4141 atttctttct ctttgctcga tttcattcca aattttatta tttatttgtg caatttgtgg
     4201 ggtaatattg ctcattaaaa atactgaatt ttgagcagct ttactaaagc taaaagaagc
     4261 attaggcgca gtgtgtcctc gtgtgtaacc actgttttta taatcactcc aagtagtgcg
     4321 gtatttttta ggaatatttg tatcatcttc aaagcgaggg cgttttttga tttgtttatc
     4381 ttttaaattt gaagcttcta ctttataagc aacggctttt gtgcctttga gtttataatc
     4441 atagcaattt agataaaaaa acttatctaa gatttgcgag caatttatat tgttaaaata
     4501 agaagaaaaa tcagcactag gtttgtaaga ttctaaggca aaaatattaa gagatatagc
     4561 gagtaaaaag atgaaaattt tcatttaagt tccttatctt tacttttgca aagatgattt
     4621 aaaaaacatt ctttacataa aggtttttta gctttacagg tgtagcgtcc aaaaagaacc
     4681 atggcttgat gaagatagtt aagattgtct ttaaatatgc ctgttaaatc ttcttctgta
     4741 gcttctggag tttttgcttt gctaagtcct aagcggtgag aaactctaaa aacatgagta
     4801 tctacagcca tgaaatttgc tccgcaccat tctattaaaa ctacatgagc ggttttttgt
     4861 cctacgcctg ccaaggattt taatttctct tcttcaaggg gaatttctcc gtcaaaattt
     4921 tcacaaactg cttttgccat ttttataaga ttttgtgctt tattattaaa aaatgaacaa
     4981 gtttgtatat aggttttaag acttgataaa tttgcatttg caagggattt gatatcagga
     5041 taagctttaa aaagatcagg agtgatgagg ttaactcttt tatcagtgca ttgggctgaa
     5101 agcatcacgc agactaaaag ctcatataaa tttgaaaatt taagctctgt tacaggcttg
     5161 tcaaaatgtt ttaaaaaaag ttctttgatt tctaaatttc ttttcatttt ttaattttag
     5221 ttaattagct ttaaaccaag tttagatata attgatttta tatacatttt attaaaaagg
     5281 aaacctaatg aaaaaatttt ctttagtcgc agcagctttg attgcaggtg tagctttaaa
     5341 tgtaaatgca gctacagtag ccactgttaa tggcaagagc attagtgata cagaagtaag
     5401 tgaatttttt gcccctatgc ttagaggaca ggattttaaa actttgccgg ataatcaaaa
     5461 aaaagctctt attcagcaat atattatgca agatttaatt ttgcaagatg ctaaaaaaca
     5521 aaatttagaa aaagatcctt tatatacaaa agaacttgat cgtgcaaaag atgcaatact
     5581 tgttaatgtt tatcaagaga aaattttaaa tactattaaa attgatgcgg ctaaagttaa
     5641 agctttttat gatcaaaata aagacaaata tgtaaaacct gcaagagtgc aagcaaaaca
     5701 tatcttagta gcgacagaaa aagaagctaa ggatattatt aacgaactta aaggttcaaa
     5761 aggtaaagaa ctagatgcta aatttagcga gcttgctaaa gagaaatcaa ttgatccagg
     5821 ttcaaaaaac caaggtggtg agcttggttg gtttgatcaa tcaactatgg taaagccttt
     5881 tacagatgct gctttcgcac ttaaaaatgg tactattact acaactccag taaaaacgaa
     5941 ttttggttat catgtaatct taaaagaaaa ttcgcaggct aaaggtcaaa tcaaatttga
     6001 tgaagtaaaa caaggtattg aaaacggact taaatttgaa gaatttaaaa aagttatcaa
     6061 tcaaaaaggc caagatcttt taaatagtgc taaagtggaa tataaataat gggtgtttta
     6121 gacattgtaa aagcaggggt gattagcgga gatgagctta ataaagttta tgactatgct
     6181 aaagcagagg gttttgctat ccctgctgtt aatgttgtag gaactgattc tattaatgca
     6241 gttttagaag ctgcaaaaaa agttaactct ccagttatta tccagttttc aaatggtggg
     6301 gcaaaatttt atgcagggaa aaattgtcct aatggagaag ttttaggtgc aattagtggg
     6361 gctaaacatg tgcatttact tgctaaagct tatggtgtac ctgtgatttt acacactgat
     6421 catgctgcaa gaaaactttt gccttggatt gatgggctta ttgaggcaaa tgcacaatat
     6481 aaaaaaaccc atggacaagc tttatttagt tctcatatgc ttgatcttag cgaagaaagt
     6541 ttagaagaaa atcttagcac ttgtgaagtt tatcttcaaa aatttgatgc tttaggtgtc
     6601 gcgcttgaaa tagaactagg ttgtacaggt ggcgaagaag atggagtgga taatacaggt
     6661 attgataatt ccaagcttta tacccaacca gaagatgtag cacttgcata tgaaagactt
     6721 ggaaaaatta gtgataaatt ttcaattgca gcaagttttg gaaatgtaca tggagtttac
     6781 aagccaggaa atgttagttt acaacctgaa attttaaaaa attcgcaaaa atttgtaaaa
     6841 gataaatttg ctttaaatag cgataagcct ataaattttg tatttcatgg tggtagcggt
     6901 agcgagctaa aagatattaa agatgcagta agctatggcg taattaagat gaatattgac
     6961 acagataccc agtgggcttt ttgggatggg gtgcgtgaat atgaacttaa aaatagggct
     7021 tatttgcaag gacaaattgg aaatccagaa ggtgatgaca agccaaataa aaaatactat
     7081 gatccgcgtg tttggttaag aagcggtgaa gaaagtatgg taaagcgtct tgaaattgct
     7141 tttgaagatt taaactgtat aaacaaaaac taagcatttt aaaggcttag ttttattttg
     7201 ttttaaaaat ttttatcaaa ttgagtagca atctttaaaa taaaattttt aatgaggtat
     7261 tggtttcatg gatattaaat cagatgaaat ttcagaactt gttttgcctg aaggcaaaga
     7321 cgcaagaggt tctttggttt attttaaaat tatttttatt ccagcttttc tttatatttt
     7381 gattttattg ggttatttta atgtaattga ctttaaggtt gaattgcata cggttattat
     7441 gacaggtgtg atttttttta cagcattgat ttttgctaga catagtgctg agtatgcgta
     7501 tagtattttt gaacaacaaa aagatgaatt taaacaggct ttaaaaagac atattatgag
     7561 gcattttctt gccataggga aagacacgaa atcaaatgcc aattttgatg actttgctta
     7621 tacatatatt aaaggtgcaa gaaatgagaa ttttgctagt ataggttcgg caatttttcc
     7681 aatgatggga attttaggaa cttttatcag catagctttt tcaatgccaa attttagctc
     7741 tagtgataca gccgctttag aacaagaaat tgcagatttg ttaagcggag taggaactgc
     7801 tttttatgtt tcaatttatg gaatttttct tgcattatgg tggatgtttt ttgaaaaata
     7861 tggtaaaagt aaaatagatc gtttgttaaa tcgtcaaaaa aacgctacaa gtggattttt
     7921 ttggacaaaa gaagagcttg atcaaagata tttaaccgag agtttgcaac attttgaaaa
     7981 aattggagca atttttaaac aagttagtaa tgatgatttt tttgcagagc ttgatcatgc
     8041 tattgataga aaatttggta ttttccaaga tatgctaaat gtagaagaaa aggctattag
     8101 attaagtagt gaacacatca aacaaaccat gggtgagctt agtaaagcac aaagagatca
     8161 acgcgatctt ggaaagcttt atagtgaaat gttaaatggt ataggtttac tcaatcaaaa
     8221 tttaaaagaa atcaatacaa gaatgtcaga acaatataat cgcttgctcg atatcagtag
     8281 tgataaaatt catcatcttg ataagacgct aagtgcattc gatgaaaaag tagagcgttt
     8341 tggtaaaaat tttgaacttt atgaaaaagc aatgttggaa agtcaagaaa aggtttttga
     8401 aggatttaaa gcaagcttgt ttgaaggtat gcataaattt aaagaagtat atgaagaaga
     8461 aaaaagtatc gatgctaaaa tcaaaatgat ggatgagctt aaaaaagaaa tgaaagcact
     8521 tgatgaagaa acaagtcaaa tgatgagcaa gctttctgga gatgaaaatc agaataaaga
     8581 aaatgaaacc aaacaaatag aagatttttc agagtctaag actgaagaaa atcaagatga
     8641 aattcaagca gaaatatcta agcaagaaag caatgatgag ctaaaaaatg aagataaaga
     8701 aaataaatga aaaatgagtc aaaagaagat agcaattttt ggatagctta tgctgattta
     8761 atggcaggat tgctgtttgt ttttattttg ctaataggtg ctattgttgt aaaatatgtt
     8821 ttaactcaaa gtgatttaaa agaaatcaaa gataatctca ataaacaaga ggcacgctta
     8881 gaggagagca aagaagagct tagaaataaa gaagccatag tgtttaaact aagttctgat
     8941 ttaaacaatg cttctagtgc tttaaatctt gctaattctc aaaaagcaga attagaggct
     9001 aatattacaa attacaagca gttaagcaaa gatttaaact taactttaga taataaagat
     9061 aagcaaattt tgattttact aggtcaacta gagaaaaaag atgaagagct taaaaattta
     9121 caagaagatt ttcaaaaagc taaagaaaag gtgcaaaatc ttggtttgat tcgtgaaaat
     9181 ttaagcaagg aattacaaag taagcttgat aataatatca ctatagatga aaagacagga
     9241 tctatttctt tgcctgctga agtacttttt gataaagatt cttatgtgtt aaaaaatgag
     9301 gcaaaggcaa gtttgagaaa aatcttaagc gaatattttg atgctattct tgaagatcca
     9361 aaaatttttt ccaacattga aaatatcatt attgaaggac atactgatag tgatggatct
     9421 tatatttata atttagattt gtcgcaaaaa agagcttatg aggtgatgaa ttttatctat
     9481 actttttata agagcgataa acttcaaaag cttttaatgg caagtggacg ttctttttca
     9541 gatcctgtgt ttgtcaatgg agttgaagat aaggataaga gtcgtcgcat agaaataaaa
     9601 tttagcatta aaaatgataa tgctttaaag gatgtagaaa aattctttga atttcattaa
     9661 aacaattagt cctatacaaa aaatcaattt taacggattt gaattttata ttaaaagaga
     9721 tgatttatta ggagaaatta atggaaataa agctaggaaa cttgcttttt atatccatca
     9781 aagatatcct aaaaatcaat cttttataag ttatggagga agccaaagta atgctttggc
     9841 ggcattaagt atttttgcta aacaaagatc atataagctt gtttttgctt gtgaaaaaat
     9901 ttctactttt cttaagaata atccttgtgg aaactatgct ttagctttag aaaatggtgt
     9961 tgattttgta gaaaatatcc attctttatc cttaaagcaa tttgcttttt ctttgtgtaa
    10021 aaaagatgat atttttatag aacaaggcat agctaattta gaagctcaat atggctatat
    10081 ggaacttgct caagaaattc aaatgcaaag tcaaagttta aagcttgatt ttgatatttt
    10141 tttaccttcg ggtacaggca cttcggcagc ttttttggca aagtattcta aatttaaagt
    10201 atttacttgc gcttgtgtag gtgatattaa atatcttaaa aaacaaattt taacattaga
    10261 tccaagctat gatttttcaa atttagaatt tttaacaagt gataaaaaat atcactttgc
    10321 taagccgtat aaagaatttt atgagcttta tatggattta aagttaaagt gcaatataga
    10381 atttgacttg ttgtatgata ttttaggatt aagtatagca ttaaaacaag agtggaaaaa
    10441 accattgctt tatatacatc aaggtggaat tttaggaaat tccactatgt tagagagata
    10501 taaatttaaa aaattagttt aaaattccat agataaaaat gattaaaata atcaaaggta
    10561 ctatatattt tacataataa aaccaaattc caaaccatga acttttaagt gtattgttat
    10621 tgctaagttc ttttagactt tcttgtttgc ctaagatcca acctacgtaa atgcagcaaa
    10681 aaaatgcagt taaaacaaac aaaatatttc cactaatgaa atcaaaacta tcaaaaatgt
    10741 tttttccttt gatgataaca atatcacgcc aaggcccata agttagaata caaggaagat
    10801 taccaagtat gaagataaat cctagagtta ggttaataga aagattttta gaatatttaa
    10861 atttttcttc taatacacta ataataactt gataaattgg taagcttgtg gttaaagctg
    10921 caatcaagag taagacaaaa aataaaatac acacaatggt gccaaaatgg atatgagaaa
    10981 atgctatagg taaagtttca aaaaccaaag aaggcccgct atctggagca agtcccgctg
    11041 agaaaagtgc tggaaaaatc ataaaaccag ccaaaacagc tatgatagta tttaaaaccc
    11101 ctgtataaat agcggttttt gccatatttt catttttatt aagatgagat gaaagtgtta
    11161 tcattacccc aaaacctagg gataaagcaa aaaagacttg tcctaaaaca tcgattaaaa
    11221 gttttggtga taaaatttta ctaaaatcag gttcaagata aaatttaact ccagccatag
    11281 ctccatcaag ggttaaattg cgtcctacaa caataataag acagataaat aacaaaggca
    11341 ttaaaaattt tacggatttt tctataccat ctataatgcc tctttttaaa ataatataat
    11401 taataattac aaaaacagtg gtaaaaatac caactcctaa aggattgaag gctattttgt
    11461 cgttaaaaaa ctgatgagta aattctttgc ttactacatt agcaagacta aaattcccta
    11521 gggttaattc ccaaatataa actaaaaccc atcctccaag taccatgtag taagccatta
    11581 tgccaaagct tcctaaaagt cccatatatc caatactttg ccatttttgt ttgaaagcat
    11641 ctacgctatt tgtcatcgct tttctgccta tgacattttc aactaaaata acaggaatgc
    11701 ctatgataat catagctata caaaaaacta atacataagc accgccacca ttttctccta
    11761 caagataggg aaaacgccaa gttgctccaa atcctatggt tgctccagca actgttagaa
    11821 tataagttag tgtgctactc catgtttgtc tttgcatgat tatcctttcg aaaaagaatt
    11881 attttaccta aaaataactt taaaaactta taagctatcc atatagctta tatcgtaagt
    11941 attttttaag cgtttgtgta tcgtttcgtg ccaattttga gatatgagag agtttaattt
    12001 ttctaattta tctaataaaa tcggattttg tctaagagct tgatgtgggg agtaaaaaag
    12061 ttgattgagt tcaaatacac taagtgaagt agaatttttt tctaaaattt taatattttc
    12121 atactttcgt atttgtccaa cttgtaaaac tttataatac catccactca agcccgtttt
    12181 aaaaatttca tgtgtaaaat ttgaattatt gtgaatttta gaaattttta cacaaggttt
    12241 tctaggttcg cttacttgca gtattgcatt tgaaatttga tgtatatcac ctatgcaaac
    12301 attttgttca caaagcccat cgatgctcaa attttcaccc attgagccaa aatttagctt
    12361 tttattaaga aatctttccc atataggata gttttgacaa gagttggcaa aaatagcctt
    12421 atggtagcct ccatgatgaa ttttatcagc tatttgatca tctaaaatac ctagaaaatc
    12481 aatttgtgtt tcttctaggt aagtatcttt aataaatgcg ctttggaaat ttttatagtt
    12541 tttaattttc cctatttgca aactttgaat tttcatggtt ctagtttttt taataaatca
    12601 tcagcactga taaaacccgt gatttttaat ttttcttttc cattttcaaa gaaaattaaa
    12661 acaggtgggc caaaaacatt aaattctttc atggttttaa tttgttcatt attattttcg
    12721 cttacatcaa ctttgataag tttgtaattt tgcatttttt gtatgattct ttcatcgcta
    12781 aaggttaatt catctaaaag tttgcaattt tcacaccaag atgcagtaaa atcaagcatt
    12841 atgggctttg tatttgtttg tatttcttgc tttaattgtt caaaattgtt aatataatca
    12901 tagcttaaag cagattttga ggcagatata gtattgaaat ttaaaggatt taagaaattt
    12961 ttagccccaa aaagtccccc taggaaaata cttagagaat aagctaaaat aagaattaaa
    13021 atactttttt taattttaga aattattgta aaactttttt caaaaattcc cataaaaaca
    13081 ctaaaaaata cacctaaaat tccataggca attaaaatgt aattttcttc aataattcta
    13141 gaaagtatcc aaatagccat agccaacata acaaaaccaa agaaaatttt tactttttcc
    13201 atccaaaaac caggtttaat aaaacctaat cctaagccta tgaaaagcaa aggtataccc
    13261 atgccaaaac tcatgataaa aagcgcacta ccgcctaata aagcattgcc tgtattggct
    13321 atataaatta aagcacctgc taaaggagct gctacgcaag gacctactat taaagcagat
    13381 aaaaatccca tgatggctat acctaaaact cctttccctt tttcgctttt tttatgtata
    13441 aaggtttgaa atcttaatgg caattcaaaa cgaaaagctc caaacatagc aaaagcaaaa
    13501 gctatgaaaa ttagagcaaa aagaattaaa ataataggtt tttgtaaaat tccttgaata
    13561 cttgctccta gaaaacttgc tataactcca gcaatagcat aggctaaaga catgaaaaaa
    13621 acatagataa aagagagaaa aaaactatat ttttttgaaa atttagcatt actttttgct
    13681 acgataagag aagataaaat cggaatcata ggtaaaatac aaggtgttaa ggagagtaaa
    13741 agtccatagc caaaaaaact tagcaaaatc caaaaaaagt tatctgttgc taaaaaattt
    13801 gctatagagc tttcttcaga ttcaatttta gtttttttat ctgttttttg agttttgtaa
    13861 ggttttgaaa tttcaaaagc atctttttta gaaatgagat caaagtacca agtttgagga
    13921 ttataacaca agccttgttc agaacaacct tgaaattcga gtttgattaa atttgtggta
    13981 ttttttgcaa agtgctctag taataaattt ggcaaagcta aatttaattt ttgataataa
    14041 acattttcat tacctcttgt agaactttga ggtagattaa tcaaagaact tatatctttt
    14101 tcgtttatat ataatttaag tttattagaa taaagataaa tatcttttcc aagttcaata
    14161 tcaattgaga tagagttatt ataagagttt gattttacat taaaagcttc atttaaagac
    14221 aatatagaag caaaacataa acaaaaactt aataaaataa taccaaaaat acgcataaat
    14281 ttcctaaaaa cttatttttt cctttatttt tagcttcaat tataatttat tatggtaaat
    14341 ttgctttaaa tactttataa aggtttgaaa atgcaagaaa ataattctcc aaaaacgcaa
    14401 gcggttgtta aaaagaatga aatttatgtt tctgttaaaa gaaagaaaag tacaatagaa
    14461 tatgaaaaag atttaaagaa tttgcaaatt gagcttttga aatttcaaaa tcatgttaaa
    14521 gccaagggtt taaaggttct tatacttata gaagggcgtg atgcggctgg aaaaggtggg
    14581 gcgattaaac gtttgattga gcatttaaat ccgcgtggtt gccgcgttgt ggctcttgaa
    14641 aaacctagtg atgtggaaaa aacacagtgg tattttcagc gttatatagc acatttgccc
    14701 tcggccggtg agattgtgat ttttgacaga tcttggtata atcgtgcagg agtagaaccg
    14761 gttatgggtt tttgtacacc gcaacaacat aaagattttt taagagaagt gcctttgttt
    14821 gaaaatatga tttcaaatag tgatattatt ttttttaaat tttatttttc agtatcaaaa
    14881 gatgagcaaa aaaaacgttt tgaaaaacgc cgaagcgatc cgcttaaaca atataaatta
    14941 tctcctgtgg atcaaaaatc gcaagaatta tgggataaat atactttagc taaatactct
    15001 atgcttttag catctaatac tccaacttgt ccttggacta ttatttcttc tgatgataag
    15061 aaaaaagcaa gattaaattt attgcgtttt atactttcta aggtagaata tccaaataaa
    15121 aaaactggag atttttccaa aattgatgca aaattagtgc gtagtggaga agaagaaata
    15181 cgaaaaatgg aggcgaattt ggaaaaactt gacagtaaaa aagcagatga gaaaataaaa
    15241 gatttagatt aaggaaaaga atgcaaaagc tggttgaaaa tttagcacta aagtactatg
    15301 ataaagtagt tgatttaaga catcaaattc atatgcatcc tgagcttgaa tttgaagaag
    15361 aaaatacagc tcatttagtg tgtaaaattt tagatgagtt tggcattaaa tatcaaaaaa
    15421 atattgcaaa aacaggaatt ttagctacta tagaaggaaa aaagaagagt cagaaaaaac
    15481 caaaatgcgt tcttttaaga gcggatatgg atgctttgcc tgtacaagaa aaaactaatc
    15541 taagttatgc ttcaaaaatt gatggtaaga tgcacgcatg tggacatgat ggacatacag
    15601 caggactttt gggagctgct ttgatattaa atgagctcaa agatgaattt tgtggcacga
    15661 ttaaatttat gtttcagccc gcagaagagg gaagcggtgg agctaaacct atgatagaat
    15721 caggtgtatt ggaaaatcct tatgttgatg cggtttttgg ttgtcattta tgggggtctt
    15781 tgcttgaaaa tactgctcaa attgtaagtg gcgaaatgat ggctggaacg gatatttttg
    15841 atttggaatt tattggcaga ggaggacatg gagctcatcc gcacacttgt atagatccta
    15901 taattatggc aacgcaattt gtaaataata tacaaagtgt tgtttctagg cgtttagccc
    15961 cttatgaagc aggggtgatt actgtaggtc aaatttgtgc aggaactact tataatgtta
    16021 ttcctacaaa tgcttattta aaaggaaccg tgcgtttttt aaatgataaa acacaagata
    16081 ttttaaaaag ttctctagaa gaagtggctg ctgctacagc aaaatctaat ggtggagatt
    16141 ataagcttaa atatactaaa gaatttcctc cattgattaa tgatgaaaaa gctgctttaa
    16201 tagcaagaaa agcttttgca aaggtcttag gagaagaaaa tatcattgtt tcttctaaac
    16261 ctgacatggg ggctgaagat tttgcttttt taacacgaga aagaatggga gcttatgtgt
    16321 ttgttggaat ttcaaaggat ttaaatcatc cagctttgca tcatagttct actttttgtt
    16381 gggatgatga aaatttaaaa gtcttaatgc aaggtgatgt gatgatggct ttagaatttt
    16441 taaatttata aaataga
//
LOCUS       DAZAND010000029        15952 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.029, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000029 DAZAND010000000
VERSION     DAZAND010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15952
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.029"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..283)
                     /locus_tag="ACHDOB_000734"
     CDS             complement(<1..283)
                     /locus_tag="ACHDOB_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325667.1"
                     /translation="MGTSLNELKTGREKLEIINQVLARINSISEAIDNTRLDEVVGLK
                     QACESLKNECLKFKNDIVDKNDDILSKYDDINKKYSNISEKYNNVNAKFD"
     gene            complement(286..480)
                     /locus_tag="ACHDOB_000735"
     CDS             complement(286..480)
                     /locus_tag="ACHDOB_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325668.1"
                     /translation="MKEHGCNCNFTKKFNRALSYKDYVQSINSADFIAYLDDKKWLLA
                     MDDLLFFCEKRIKDSDYYEG"
     gene            complement(461..865)
                     /locus_tag="ACHDOB_000736"
     CDS             complement(461..865)
                     /locus_tag="ACHDOB_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002796938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325669.1"
                     /translation="MLCATAKKLIIAKVKNSYKMIEDDEVLKAYFMEAFYYILSKCVP
                     SVLLKNVEQGEKVFRQVRNNHFLIIPDEPDFDNEKEHLMIDETLSFAVINYVCYLITR
                     CEEKDFLALCDKIIYEYIANDGKELDDERTWL"
     gene            complement(865..1899)
                     /locus_tag="ACHDOB_000737"
     CDS             complement(865..1899)
                     /locus_tag="ACHDOB_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5309 family protein"
                     /protein_id="HFN3325670.1"
                     /translation="MALPSMGHTSPATENVKLKQSIYETIIKIGATETPILNKIGTSK
                     VTNPLTHSWITDTFEEPKKNANLELSKFVGETKNTAQKTTNATQIFITEAMVSKALLK
                     ANQYGGNEMEYQIGKKTKEHKMDMEYALFGLGRDSDVKKSVFKDYVQAQEATSGEMAG
                     LFHYIAKGKDSFADGKRGNVLAFDETGDWSGTATELTEDKLNQILQTIWNSGVTPKDV
                     FLGADLKGAINKFATRILGNETKLAGQVVSLETDFGTVNFHMHRLLSPKYGLGDVLIA
                     GDFEYMKHGLYIPTMIEDVPTDITAKAKRFYTQSTLEVRNADAFAIGVGLTSGNNAKA
                     KAVLKAAKGA"
     gene            complement(1990..2637)
                     /locus_tag="ACHDOB_000738"
     CDS             complement(1990..2637)
                     /locus_tag="ACHDOB_000738"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325671.1"
                     /translation="MQCFLIDELNIKESVYDRFLDKHDRKSSNNYNYEAIKIFSDNNT
                     IDGDKLQEYFFGTEKKYDVFISHFSQEKDKAIQLKNFLKEKCKVNAFVDSYVWGNYRE
                     ILRYIKKELKADNEEYLLANLHIMLQSSLRNIIESARYFIFIDNKEHCNNNTIYSPWV
                     YYELQEANRKHSDEINLSMENLCESLYMSIKRDIRPFLKFFKTVNDISDFKSLIK"
     gene            2723..3190
                     /locus_tag="ACHDOB_000739"
     CDS             2723..3190
                     /locus_tag="ACHDOB_000739"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325672.1"
                     /translation="MEKEKIIIEELKMIQDIIKRMADNSFKLKNWCLTVVVVTMLFQQ
                     GVDNLIPIIPLFSFWFLDSYYLYIEREFRDLYNIKVRQFNNSANLKQSMQSHFVFEIN
                     GKFTFKKLFIVGFSKTILYFYGVVLILILLVKYKKIVFNFVDNLIISIGAINT"
     gene            complement(3247..6948)
                     /locus_tag="ACHDOB_000740"
     CDS             complement(3247..6948)
                     /locus_tag="ACHDOB_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBECR2 nuclease fold domain-containing protein"
                     /protein_id="HFN3325673.1"
                     /translation="MNIREFLLEKPQENNIISFLQDGASQSENQNTSEYLSNLKNEVI
                     NDFYKNKDKYAKEYEKYNFKDQNLTNPMGNISEYKRDLYDYNKNPSMNADDLSNYILD
                     KQSKFNASKPIFTDDNEVARKSNQFMRDLGDELQKSGRGRLLQDDDGSYWVQDNNGNY
                     SKVQGSTMGDLYRGLRDNGASMALGTAGAIGGTMLGGGVGMVAGGSLGASLGAGYDYY
                     GNTKDTNQDMNLKEALMLMGENAGLSLIGDAAFAGVAKGARVLKNTYNMTKSGAQAGK
                     DMIDGMAVKGGNLKENIGDKLRKISPSILNDLASQGSETSKAYARELIESGNRNYDDI
                     LQKSRAMPLEVNQGNALVDGVASKIKDFSNTAKNGFVKNTADNVTNSLNNISKNIGSK
                     EAALNQQDLINLSFMNDDLANMARSVLANDPKMANKVANSLHLQDEAILKELNLNNAS
                     KADELYALRDARAKRAYDEFGKGLDKLDELNPNGVKVDKQTIDDIVLNSSVYSESTPA
                     MIKNFIHEAKSGALDGKSVKEIYDRIDAIGNKIKESSSYNYKDFLNSLKDAFLENIVK
                     SADNPQEAKEILTKIRKDYADFKVYDKSKLGKKLEGSEKEISKDIDKILNETNPKKNY
                     EAITKGLNDDEIKVLDNQIITRALEKNKVNIGDANNPKFAVNYKAVMDNFENFKPKSK
                     SGQEKIEVLKTIGDLRTNFETVIDGILNSKAKELGHGISTNFIERAKTMLVNNFTDYI
                     AFYFMRLWEVGKRAGTRIQMRRGFSNINNLKDFDRSAKEFIESIKDKTLKEEAQEARK
                     EFNSKVKDLIKGDNFFMDKADPKDNSLRFIGKNGKEYTINKDVRNEWMKTFNLKNIDD
                     EYIPNIPKEAKIALKDREIKLTKGSLLKLIEKDRIKYIPHIKETLESPQAILKDKDDF
                     IFIKNIDNQTYFTSIGKDYETHLTIISNSPKKQNNIKNKMKNAEVVYYNNARALPTSR
                     ASSETKQVSFSNENSTQAKPKKNLMDDIKENIKNKEVKKKNKKSVKQRLDKKIQNDKK
                     ASEDILKRYDNFLKENKDYNLDFLDNMNLNTVEYNLTRQMIINAKESTNKGVKKDIPS
                     ALRGKIEQELNIQPLKEFGENYAEYYHDGKGALQKLLIEKQGQVAGAFHRKDLGDIDL
                     VWGDGNFGLSHIVNRREEDFIKQGLNKIEAKNKALNFIKEIENIINNGNVKKGNNRAF
                     IEVKNSRVMVALDYKGKDKKWIITAYNFY"
     gene            complement(6948..8159)
                     /locus_tag="ACHDOB_000741"
     CDS             complement(6948..8159)
                     /locus_tag="ACHDOB_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325674.1"
                     /translation="MAFYNPQRVVFNPDTGVIQNAGKVGGVLYDIMSKSFDDKVKANE
                     FQQEQDLRKQQMEFNQAMQNNQLLQNERNFDYQKERANIADQQWQMNYNQRARQYAMQ
                     NALRQQAINANKAYKDLNYQKGLLELQKLQNEINAKQKEQDLLNGVLSNSQGLDSQNN
                     ANLQNNTRYKADAQFLDLASKQGKTYDTTHGFWNGALERAFGGWGSQSTDLNDASDLF
                     LKRMLSDLLRGGKNAKWNLENIQANFPINGYTMEANNQRVAQALAGEWLAEAPNSYKM
                     ELVERLGNAKTNIEKQSAIEDYKNNMDFYNNYAPKVKAFYWDEKYSKPSKNAVIIDNS
                     TTNQNIQNDLAKNILEVQNQNTPKLHSVSFNGINAQISEPDANGNVILVNQAGRKMQV
                     SVEELKKQGLI"
     gene            complement(8424..8804)
                     /locus_tag="ACHDOB_000742"
     CDS             complement(8424..8804)
                     /locus_tag="ACHDOB_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325675.1"
                     /translation="MDFITALKGGTGLGSSFADTLMKTSNFTPNLASSSGGFLNGLKN
                     SFSNFGDWLFKSSDANKVTNFDRLGNVLGGAGALYGAYNQQKMAQKNYELQKDAYNFN
                     KYLANEELNRRKNMENKLQNVWSN"
     gene            complement(8815..9462)
                     /locus_tag="ACHDOB_000743"
     CDS             complement(8815..9462)
                     /locus_tag="ACHDOB_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325676.1"
                     /translation="MENDALKDLINVITDDDKGQVANNGDEPTQVEDNEPMQVANENE
                     PDYKAMFEAYKSENDNKLNALMSELEALKNPKKEPSEQELQREQYLKELGLDGLDEKL
                     KRLEELDKKQKDKEEQDALIAKYAQVESELRKAYPDADLKAMAELATKLNGLGEGNID
                     SWKTLLNLVGKSNNAKKAEDLSSANNNVRTSDFNDKLKKGEVSEIDLGKELLSLV"
     gene            complement(9452..9655)
                     /locus_tag="ACHDOB_000744"
     CDS             complement(9452..9655)
                     /locus_tag="ACHDOB_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325677.1"
                     /translation="MLNIEIKSDISKTKGGKKLIDFIKAKYSECFYIAKNNDEKELRL
                     KALDTMAFLDIIINKIKDEEDGK"
     gene            complement(9648..11186)
                     /locus_tag="ACHDOB_000745"
     CDS             complement(9648..11186)
                     /locus_tag="ACHDOB_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325678.1"
                     /translation="MKTKRTNDERVSFLTQLISESKSGYENYKPHFKELQDAYLLENK
                     VMQKLRKRNKSSIYIPKINAKVKYLITSLNDVYFNSERMADIETYINSDDTIIELWQN
                     AIDFYSGKINMFKIFQPLFLDVLLVGTSIAKVTWHKGMPRIERVDIDSIFFDPNALNS
                     EDVGYIVNEIYLTYNQIHERQKLGFYKKIEIKKLFDEDDEYKKVKLYDIYERKNDDEW
                     VVSTLFENNLLRNEVTLQDGQPFIWGSMLPQLKKIDNENYVSAYGEPIMASAMPLQDE
                     INITRNLLIDAVRTHIMPKIMMPKSMGVSREDIETLGKPIYTDDPKGVQILPPPNVNS
                     AGMNLQLLESELTEVTGVSPQNNGAQTAQNETATEISIKAQEGGRRSADYIRQYNETF
                     IEPLFDRFAMLVFKYGEDSFFNGFQREDIPSFRFKIQTGTGAMNKEIRRAGIQASMQV
                     FSQLYQMYMSIGDANSAYGIINASKELTKELLPILGVKNVNSLFAFENNEDINPQMQG
                     EANA"
     gene            complement(11167..11439)
                     /locus_tag="ACHDOB_000746"
     CDS             complement(11167..11439)
                     /locus_tag="ACHDOB_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002924542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325679.1"
                     /translation="MAGEFLMIYDAIDVNKIKKLSNLSDEAIKSSLANEFLELVSGFN
                     NISKKKFKREFAEFLFEKGVNEKDILKITNLSKTTIWRIMNENKKN"
     gene            complement(11429..12721)
                     /locus_tag="ACHDOB_000747"
     CDS             complement(11429..12721)
                     /locus_tag="ACHDOB_000747"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325680.1"
                     /translation="MKLKIDFSYTPAQLKVFDDKNPRFITVAKGRRLGFTRGSAKFVI
                     ENLLLGQNVLWVDTIQANLQNYYELYFTPELKNLPKDFYSWSVQDKKLIINGAVLHMR
                     SAERSENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLLDNPKSRAIIGGVPKG
                     KNLFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEF
                     IDSSSAELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYE
                     IKKYSQLGTIELANKILAEYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSA
                     NSATSNEYLNKRAQMYFTFAKNLKHMELVKDEELKKDMRMIEYEYSDKGLLKIVSKEQ
                     LKKNYGKSPDVSDAVALTFFEKLYSRNNTNEDWSYDGW"
     gene            complement(12718..13104)
                     /locus_tag="ACHDOB_000748"
     CDS             complement(12718..13104)
                     /locus_tag="ACHDOB_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HFN3325681.1"
                     /translation="MARMMTNGKSMTKEELVSKIESYFNERVVLKETKESIIFAPKTK
                     VGLAVYLGITIQTLGEWEKDKDFGEIVSQAKQKCEMDILNHSLIGTYTPSVSMFLLKN
                     QHGYVDKQEVVSDNVQKIEIIRSEIK"
     gene            complement(13104..13484)
                     /locus_tag="ACHDOB_000749"
     CDS             complement(13104..13484)
                     /locus_tag="ACHDOB_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325682.1"
                     /translation="MEKYILKIDLKSNPVPYKRTTQRSKFACKDYLKYLDFKKLLQME
                     FRRQNNISCFQAFDKQKKYEFSLKIGFNSKRHGDGDNIVKCVLDALFENDKNVLKGDY
                     EIISFKKSFLDLEIKEFNFKEGVA"
     gene            complement(13502..14152)
                     /locus_tag="ACHDOB_000750"
     CDS             complement(13502..14152)
                     /locus_tag="ACHDOB_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325683.1"
                     /translation="MQEKIQILMDLLEINKAQATDIVGRYLKSVKDIHAFLDFYFETL
                     ERENIVGTTYEKLRRVCKRAEIEFKKRFEDKEIFLEWLKNKYKNSPFFRLLESDFKYS
                     YVCYDGQGNLFKRLAKSINMLVCLNNFGELTYEDGEMLKNNEFKHALIDFIFKNQERI
                     GKDIYINTSYKIKGYTSLSHEEEYNNFKKVQKKFFKENQEEFQKKVKVKMAFKNIS"
     gene            complement(14163..15164)
                     /locus_tag="ACHDOB_000751"
     CDS             complement(14163..15164)
                     /locus_tag="ACHDOB_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325684.1"
                     /translation="MIPNFIASFDVAIGRKRLRERKGYLKLSNTIAYGGLSVDALALY
                     IQLAKLSEKTIVSEIYLREFIKVKNNQRMSLNRLRIAKKELIELRLLEIKKVRNGSLN
                     FYEWILKDENYQVKKHFNKSLSLLKNSDEKLSKTLKNNASSIDRKLTTENEKNQKSLY
                     IETRTHARDNKFINNININNNKFIKKENLENLKNNQEKKERVFNQNASFVTSFIDFSK
                     KELEKMAKKEFKVPNANELMRQIIAFNEKNGTNFGEELANDFIGYWDAREWKRNGKRM
                     SSVAGSLYTWLKYAKENEARKNQRFNRKKEANPSVVDSLMEYYGMKDENKNKLLGCF"
     gene            15207..15572
                     /locus_tag="ACHDOB_000752"
     CDS             15207..15572
                     /locus_tag="ACHDOB_000752"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325685.1"
                     /translation="MFNSFLSEMLKTATLENLVYFLIGVLFGLSIRPLFLYLTKKQKL
                     KRVCIKDMKLENDLTKRLYPNLGYKLVTKKTPFEMVFKKDKFKYIICPHYRDKKCVLD
                     NDKCKILKSQPKYQPLETV"
     gene            complement(15728..>15952)
                     /locus_tag="ACHDOB_000753"
     CDS             complement(15728..>15952)
                     /locus_tag="ACHDOB_000753"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325686.1"
                     /translation="MKKIDFFDFTKILSNHYTVISVKKIRTNKSRPSFKKQIEFKKLY
                     GIPHEFWVDVRSNLINIPKRGRKRKDRELK"
BASE COUNT         4708 a         2849 c         1777 g         6618 t
ORIGIN      
        1 aatcaaattt tgcatttaca ttgttgtatt tttcacttat atttgaatat tttttattaa
       61 tatcatcata tttgcttaaa atatcatcat ttttatctac aatatcattt ttaaatttta
      121 aacattcatt ttttaaagat tcgcaagctt gttttaagcc tacaacttca tcaagtcttg
      181 tattgtctat tgcttctgaa atgctgttta ttctagctaa aacttgattt atgatttcaa
      241 gtttttctct acctgttttt aattcattta agcttgttcc catttttaac cttcataata
      301 atcactatct ttaattctct tttcacaaaa gaaaagcaga tcatccatgg ctaaaagcca
      361 ttttttatca tctaaataag ctataaaatc agcactattt atactttgca catagtcttt
      421 ataactcaaa gctctattaa atttttttgt gaaattacaa ttacaaccat gttctttcat
      481 catcaagctc cttgccatca ttagctatat actcataaat tatcttgtca cataatgcca
      541 gaaagtcttt ttcttcgcat cttgtaatca aataacaaac ataattaatc acagcaaaac
      601 taagtgtttc atctatcatt aaatgttctt tttcattgtc aaaatcaggc tcatcaggaa
      661 taatcaaaaa atgattattt ctaacttgcc taaaaacttt ttcgccttgc tctacatttt
      721 ttaaaagaac gctaggaaca cattttgata aaatataata aaatgcttcc ataaaatagg
      781 ctttcaaaac ttcatcatct tctatcattt tgtaagaatt tttaacttta gcgataatga
      841 gttttttagc cgtagcacaa agcattatgc accttttgct gcttttaaaa ccgctttagc
      901 ctttgcatta tttccgctag ttaatcccac tcctatagca aaagcatcag catttcttac
      961 ttctaaagtg ctttgcgtat aaaatctttt tgcttttgca gtaatatcag ttggaacatc
     1021 ttcaatcata gtaggaatat aaagcccatg tttcatatac tcaaaatctc cagcaattaa
     1081 aacatcaccc aaaccatatt tagggcttaa taatctatgc atatggaaat ttaccgttcc
     1141 aaaatctgtt tcaaggctta ctacttgtcc tgctagtttt gtttcattgc ctaaaattct
     1201 tgtagcaaat ttgttaatag ctccttttaa gtcagctcct aaaaagacat ctttaggcgt
     1261 aactccgcta ttccaaatgg tttgcaaaat ttgattaagt ttatcttctg ttagttctgt
     1321 tgcagttccg ctccaatctc ctgtttcatc aaaagctaat acatttccac gctttccatc
     1381 agcaaagcta tcttttcctt tagcgatata atgaaaaagt ccagccattt ctccacttgt
     1441 tgcttcttgt gcttgaacat aatctttgaa aactgatttt tttacatcac tatctctgcc
     1501 tagaccaaat aaagcatatt ccatatccat tttatgttct ttggtttttt tgcctatttg
     1561 atactccatt tcattgccac catattgatt tgcttttaac aaagcttttg ataccatggc
     1621 ttcggtaatg aatatttgag tagcatttgt agttttttga gctgtgtttt ttgtttcacc
     1681 tacaaattta cttaactcta aatttgcatt cttttttggt tcttcaaaag tatcagtaat
     1741 ccaactatga gttaaaggat ttgtaacctt tgaagtacct attttattta aaattggtgt
     1801 ttcagtagct ccaattttaa taatcgtttc atatattgat tgttttaact taacattttc
     1861 cgttgcgggt gaggtatgtc ccattgaagg taaagccatt tttgaattct ccttagttta
     1921 gttttaagga tttttccaaa aatagctatt tcaaaaatag tgtgttttga aatgatttta
     1981 aataaaaatt tattttatga gacttttaaa atcggatata tcattaactg ttttaaaaaa
     2041 tttaagaaaa ggacgaatat ctctctttat agacatatat aagctttcac ataggttttc
     2101 catacttaaa tttatttcat cactatgttt tctatttgct tcttgtagct cataataaac
     2161 ccatggagaa tatatggtat tgttattgca atgctctttg ttatcaataa atataaaata
     2221 cctagcagat tctataatat ttcttagcga ggattgtagc atgatatgta aattagcaag
     2281 taagtattct tcattatcgg ctttaagttc ttttttaata tatcttaata tttccctata
     2341 attaccccaa acataagaat ctacaaaagc attaacttta catttttcct tcaaaaaatt
     2401 cttaagttgt attgccttgt ctttttcttg actaaaatgt gatataaaaa catcatattt
     2461 tttttctgtt ccaaaaaaat attcttgtag tttatcgcca tcaatagtgt tattatcgct
     2521 aaatattttt attgcttcat agttataatt atttgaactt ttgcggtcgt gtttatctaa
     2581 aaatcgatcg tatacagatt ctttaatgtt tagttcatca atcaaaaaac attgcatatt
     2641 ttactcctta ttttaacgcc taattatatt ataatactaa ttaatattaa gtaaaatata
     2701 aaaatattac aaggatagat ttatggaaaa agaaaaaatc attattgaag agctcaaaat
     2761 gatacaagat attattaaaa gaatggctga taattctttt aagcttaaaa attggtgctt
     2821 aacagtagta gtagttacca tgctttttca acaaggggtt gataatctta tacccataat
     2881 cccacttttt agtttttggt ttctagattc atattattta tatatagaga gagaatttag
     2941 agacttgtat aatataaaag taagacaatt taacaatagt gccaatttga aacaatctat
     3001 gcagagtcat tttgtttttg aaattaatgg aaaatttaca tttaaaaaat tatttattgt
     3061 tggattttct aagactatat tatattttta tggggtggtt ttaattttga tattacttgt
     3121 taaatataaa aaaattgttt ttaattttgt tgataattta atcatctcca ttggtgctat
     3181 taacacttaa agtgtcagta ttaagcctag ctttagtgcg tatcggctaa gctaggggcg
     3241 ataatattaa taaaaattat atgcagttat aatccacttt ttatctttac ctttataatc
     3301 aagtgctacc ataactctac tattcttaac ttcaataaaa gctctattat tacctttttt
     3361 tacatttcca ttatttataa tattttctat ttcttttata aaatttaaag ctttattttt
     3421 tgcttctatt ttatttaacc cttgtttaat gaaatcttct tctcttcgat tgacaatatg
     3481 acttaatcca aagtttccat ctccccaaac caaatcaata tcacctaaat cttttctatg
     3541 aaaagcacct gctacctgtc cttgtttttc aatgagtagt ttttgtaaag caccttttcc
     3601 atcgtgataa tattctgcat aattttcgcc aaattctttt aaaggttgta tatttaattc
     3661 ttgttcgatt ttacccctta aagcacttgg aatatctttt tttacacctt tatttgtgct
     3721 ttctttggca ttgattatca tctgtctagt taagttgtat tcaacagtat ttaaattcat
     3781 attatctaaa aaatcaagat tataatcttt attctctttt agaaaattat catatctttt
     3841 tagaatatct tcactagctt ttttatcatt ttgtattttt ttatcaagcc tttgttttac
     3901 gcttttttta ttctttttct ttacttcttt attcttaatg ttctctttta tatcatccat
     3961 taagtttttt ttaggcttag cttgggtaga attttcgtta gagaacgaca cttgctttgt
     4021 ctctgaagat gccctagatg tcggtaaggc tctcgcatta ttataataca ctacttcagc
     4081 atttttcatt ttatttttta tattattttg tttctttggc gaattgctaa ttatagtcaa
     4141 atgcgtttca tagtctttgc ctatacttgt aaaataagtc tgattatcta tatttttaat
     4201 aaaaataaaa tcatctttat cttttaagat tgcctgtggg ctttctaaag tttctttgat
     4261 atgtggtatg tatttaattc tatctttttc aatcagcttt agtaaacttc cttttgtaag
     4321 ttttatttct ctatctttta aagctatctt tgcttctttt ggtatattag ggatatattc
     4381 atcatcgata tttttaagat tgaaagtttt catccattca tttctaacat ctttatttat
     4441 agtatactct ttgccatttt tgcctataaa tcttaaagaa ttgtctttag gatcagcttt
     4501 atccatgaag aagttgtcgc ctttgattaa atctttaact tttgaattaa attcttttct
     4561 agcctcttgt gcttcttctt tgagtgtttt atctttaata ctttctataa attctttagc
     4621 cgatctatca aaatctttta aattatttat attactaaac ccccttcgca tttgtattct
     4681 tgttccagct cttttgccaa cttcccataa tctcataaaa taaaaagcta tataatcagt
     4741 gaaattatta acaagcattg ttttagctct ttctatgaaa tttgtactta ttccatgtcc
     4801 tagttctttt gcttttgaat ttaaaatacc atctattaca gtttcaaagt tagtacgtaa
     4861 atcacctatt gtttttaaaa cttcaatctt ctcttgtcct gatttgcttt ttggtttaaa
     4921 gttttcaaaa ttatccatga ccgctttata atttactgca aatttgggat tattggcatc
     4981 tcctatattt actttatttt tttctaaagc tctagttatt atttgattat ctaaaacttt
     5041 aatctcatca tcattaagtc cttttgttat agcttcataa ttcttttttg gattagtttc
     5101 attaagtatt ttatctatat cttttgatat ctctttttca cttccttcta gtttttttcc
     5161 taatttactt ttatcatata ctttaaaatc tgcataatct tttctaatct tggttaaaat
     5221 ctcttttgct tcttggggat tatcagcact ttttactata ttttctaaaa atgcgtcttt
     5281 taagctattt aaaaaatctt tatagttgta acttgagctt tcttttattt tattgcctat
     5341 agcatcaatt ctatcgtaaa tctctttaac gcttttacca tctaatgcac cgctttttgc
     5401 ttcatgaata aaatttttta tcatagctgg cgtgctttca ctataaacac ttgagtttaa
     5461 aactatatca tctatggttt gcttatctac ttttacacca tttggattaa gttcatctag
     5521 tttatcaagt ccttttccaa attcatcata agctcttttt gctctagcat ctcttaaagc
     5581 ataaagctca tcagccttag aagcattatt taaatttaac tcttttaata tagcctcatc
     5641 ttgtaagtgt aaagagtttg caaccttatt tgccatttta gggtcatttg ctaaaacact
     5701 tcttgccata ttagctaaat catcattcat aaaagaaaga ttaataagat cttgttgatt
     5761 cagtgctgct tcttttgaac ctatattttt actaatatta tttagtgaat tagttacgtt
     5821 gtctgctgta ttttttacaa aaccattttt tgcagtattt gagaaatctt ttattttgct
     5881 tgccactcca tcaactaatg catttccttg attaacttct aaaggcatag ctcttgattt
     5941 ttgcaatata tcatcataat ttctatttcc gctttctatt agctctcttg cataagcttt
     6001 tgaagtttcg ctaccttgtg aagctaaatc atttaaaata ctagggctta tttttctaag
     6061 cttatcccct atattttctt ttaaattacc accttttaca gccattccat ctatcatatc
     6121 tttaccagct tgcgctcctg atttagtcat gttataggta ttttttaaaa ctcttgctcc
     6181 tttggcaact cctgcaaaag ctgcatctcc tattaaagaa agtcctgcat tttcgcccat
     6241 aagcataaga gcttctttta aattcatatc ttgatttgta tcttttgtat ttccgtagta
     6301 atcatatcct gcccctaaag atgcacctaa tgaaccacct gcaaccatac caactccgcc
     6361 acctagcatt gtaccgccaa tggcacctgc tgttcctaaa gccatactag caccattatc
     6421 tcttaatcca cgatataaat cacccattgt gctaccttgc actttagaat aatttccgtt
     6481 attatcttgc acccaataag atccatcatc atcttgcaat aatcttccac gccctgattt
     6541 ttgcaactca tcgcctaaat ctctcataaa ctgattactt tttcttgcta cttcattatc
     6601 atcagtaaaa ataggtttag aggcattaaa tttagattgc ttatctaaaa tataattact
     6661 taaatcatca gcattcatgg atggattttt attataatca tataaatccc ttttatattc
     6721 actaatattt cccataggat ttgttaaatt ttggtctttg aaattatatt tttcatattc
     6781 tttagcatat ttatctttat ttttataaaa atcatttatt acttcatttt ttaaatttga
     6841 taaatattca cttgtatttt gattttcact ttgacttgct ccatcttgca aaaatgaaat
     6901 aatgttattt tcttgtggtt tttctaataa aaattctctt atattcatta tattaatcct
     6961 tgttttttta attcttctac gctaacttgc atttttctac ctgcttgatt aactaatatt
     7021 acattaccat tagcatcagg ctctgatatt tgagcattaa ttccattaaa actaacgcta
     7081 tgtaattttg gtgtattttg attttgcact tctaatatat ttttggctaa atcgttttgt
     7141 atattttgat tagttgttga attatctata attactgcat ttttactagg ttttgagtat
     7201 ttttcatccc aataaaaagc ttttaccttt ggagcataat tattataaaa atccatatta
     7261 tttttataat cttctatagc actttgtttc tcaatatttg tttttgcgtt tcctagtctt
     7321 tctactaatt ccattttata agagtttgga gcttctgcca accattctcc tgctaatgct
     7381 tgagctaccc tttgattatt tgcttccata gtataaccat taatagggaa attggcttgt
     7441 atattttcca aattccattt agcatttttt ccgcctctta ataaatcgct taacattctt
     7501 tttaagaata aatcacttgc atcatttaaa tccgtgcttt gacttcccca tccaccaaaa
     7561 gcacgctcta aagctccatt ccaaaatcca tgtgtagtat cgtaggtttt accttgttta
     7621 cttgctaaat ctaaaaactg agcgtctgct ttatatcttg tattgttttg taaatttgca
     7681 ttgttttgac tatctaaacc ttgactatta ctaagaactc catttaataa atcttgctct
     7741 ttttgttttg catttatctc attttgcaat ttttgtagtt ctaataatcc tttttgataa
     7801 tttaaatcct tgtaagcctt attagcattt attgcttgct gtcttaaagc attttgcatg
     7861 gcatattgtc tagctctttg attataattc atttgccatt gctgatctgc tatatttgct
     7921 ctttcctttt gataatcaaa atttctctca ttttgcaaaa gctgattatt ttgcatagcc
     7981 tgattaaatt ccatttgttg ctttcttaaa tcttgctctt gttgaaactc attagcttta
     8041 actttatcat caaaactttt gctcatgatg tcatataaga caccaccgac ttttcctgcg
     8101 ttttgtataa cgcctgtatc aggattaaat actactcttt gtgggttata aaatgccatt
     8161 ttgtttcctt tattctttct tttaaaataa aggatttaag gaagtttgtg tataatttta
     8221 aaaggtgtgg tgccaagggt cgccaccctt agcactaaat taccacctag aaaggcggtg
     8281 aaataagatg ctacaaatct taatagttat tatactactt tgtattattg ttgtcaatgc
     8341 aaattaacaa tcaataaaca aagcccctta tacaaggggt taagatttac cctttaaaac
     8401 aaactcctta aatccaaatt tatttaatta ctccaaacat tttgaagttt attttccata
     8461 ttctttcttc tatttaattc ttcattagct agatacttat tgaagttata agcatctttt
     8521 tgtagctcat aattcttttg cgccatcttt tgctgattat aagcaccata taaagcacca
     8581 gcaccgccta aaacatttcc taatctatca aaattagtta ctttatttgc atcagaactt
     8641 ttaaataacc aatctccaaa attactaaaa gaatttttta atccatttaa aaaaccacca
     8701 ctgctacttg ctaaatttgg agtaaaattg cttgttttca tcaaagtatc tgcaaagcta
     8761 gagcctagtc ctgtaccacc ttttaaagct gttataaaat ccataatttc tcctttatac
     8821 taaacttaat aattctttgc ctagatctat ctcgctaact tcgccttttt ttaacttatc
     8881 gttaaaatca ctagttctta cattattatt tgcacttgat aaatcttcag cttttttggc
     8941 attatttgat tttccgacca aattaagcaa ggttttccag ctgtcaatat taccttcgcc
     9001 taaaccattt aattttgttg caagttctgc catagccttt aaatccgcat caggataggc
     9061 ttttcttaac tcgctttcta cttgtgcgta tttagcgatt agtgcatctt gctcttcttt
     9121 gtctttttgc tttttatcaa gctcttcaag cctttttaat ttctcatcaa gtccatcaag
     9181 tcctaattct tttaaatact gctctctttg taattcttgt tcgcttggct ctttttttgg
     9241 attttttaaa gcttcaagct cactcattaa agcatttaat ttgttgtcat tttcactttt
     9301 ataagcttca aacatcgcct tataatcagg ctcgttctca ttagcaacct gcataggttc
     9361 attatcttct acttgcgtag gttcatcgcc attattagca acttgtcctt tatcatcatc
     9421 tgttatgaca tttattaaat cttttaaagc atcattttcc atcttcttca tcctttattt
     9481 tattgattat tatgtctaaa aaagccatag tatctaaagc ttttaacctt aactctttct
     9541 catcgttatt ttttgctata taaaaacatt cactatattt tgctttgata aaatctatta
     9601 atttctttcc tcctttagtt ttagatatat cacttttaat ttcaatatta agcattagct
     9661 tctccttgca tttgtggatt aatatcttca ttattttcaa aagcaaataa actatttaca
     9721 ttctttacac ctaaaattgg taataattct ttagtaagtt ctttactagc atttataatc
     9781 ccataagcag aatttgcatc gcctatgctc atatacattt gatataattg tgaaaaaact
     9841 tgcatactag cttgaattcc tgcacgtcta atttctttat tcatggcacc tgtgccggtt
     9901 tgaattttaa atctaaaact aggtatatcc tctctttgaa aaccattaaa aaaactatct
     9961 tctccatact taaaaacaag cattgcaaat ctatcaaata aaggctctat aaaagtttcg
    10021 ttatactgtc ttatatagtc agcacttctt cttccgcctt cttgtgcttt tatgctaatt
    10081 tctgttgctg tttcattttg tgcagtttga gctccattgt tttgtggact aactcctgta
    10141 acttctgtga gttcgctttc taaaagctgt aaattcattc ccgcactatt tacatttggt
    10201 ggtggtaata tttgcacacc ctttggatcg tctgtatata ttggttttcc taaggtttct
    10261 atatcttctc tgcttactcc cattgatttt ggcatcatta ttttaggcat gatatgagtt
    10321 cttactgcat ctattaaaag atttctagtt atattaattt catcttgcaa aggcatagca
    10381 gaagccatta taggctcgcc ataagcactt acatagtttt cgttatctat ctttttaagt
    10441 tgtggtagca ttgaacccca gataaaaggc tgtccatctt gcaaagtaac ttcatttcta
    10501 agtaaattat tttcaaataa ggtagaaacc acccactcat catcgttttt tctttcataa
    10561 atatcataaa gctttacttt tttatactca tcatcttcat caaaaagctt tttaatttca
    10621 atttttttat aaaaacctag cttttgtctt tcatggattt gattataggt taggtaaatt
    10681 tcattgacta tatatcctac atcctcgcta tttaacgcat ttggatcaaa gaatatacta
    10741 tcaatatcta ctctttcaat gcgtggcatt cccttatgcc aagtaacctt agctatactt
    10801 gttcccacaa gtaaaacatc taagaaaagc ggttgaaaaa tcttaaacat attgatttta
    10861 ccactataaa aatcaattgc attctgccat agctctataa tcgtatcatc gctattaata
    10921 taagtttcaa tatctgccat tctctcacta ttaaaatata catcatttaa gctagtgatt
    10981 aaatacttta ccttagcgtt tatttttggt atgtaaatac ttgatttatt tctttttctc
    11041 aatttttgca ttaccttatt ttcaagcaaa taagcatctt gcaattcttt aaagtgtggt
    11101 ttgtaatttt catatccact tttactttcg ctaatgagtt gtgttaaaaa cgatactctc
    11161 tcatcattag ttctttttgt tttcattcat aattctccat attgttgttt tgcttaaatt
    11221 tgttattttt aaaatatctt tttcattcac tcctttttca aataaaaact ccgcaaattc
    11281 tcttttaaat ttctttttag aaatattatt aaatcctgat acaagttcta aaaattcatt
    11341 tgcaagactt gactttatag cctcatcgct taaatttgaa agctttttta ttttgtttac
    11401 atcaattgca tcatagatca ttaaaaactc accagccatc ataactccaa tcttcattag
    11461 tattgtttct gctgtatagt ttttcaaaaa aagttaatgc caccgcatcg ctaacatcag
    11521 gacttttgcc atagttcttt tttaattgtt cttttgaaac tatctttaaa agccccttgt
    11581 cgctatattc atattcaatc attctcatat ctttttttaa ttcttcatct ttaacaagct
    11641 ccatgtgttt taagttttta gcaaatgtaa aatacatttg cgctctttta tttaagtatt
    11701 cattactggt tgcagaattt gcagaatttg cctcaaatac aggcaaacca taatttaaca
    11761 agacatcata tacgccaacg ccaagaccac aggtatctat aaaaatacct tttggtttat
    11821 cttcgctttg attgtattcg gctagtattt tgtttgctaa ttctatagtt ccaagttgtg
    11881 agtatttttt aatctcataa attacaaaac cttttctttt tgctaaagca ctcttatcat
    11941 ctccatatct tgctacatca agcccccaaa tattctcgcc ttgcattttt tcaatactaa
    12001 aagagttctt gctcatcgca ttttcaattt cacttagaga aaataattca gcactcgagc
    12061 tatctataaa ctcgccataa atttcttgct tgacaacttc actaccttct ccgcctactt
    12121 cttcaattaa ttctttaatt tgctcttctt ttaaaaatgg attatcataa cttgagaatt
    12181 gaaaatgttt ccaattttta tcgctgagtt cttttctgca aagttcataa aatagatttt
    12241 ttcctttagg aactccaccg ataatcgctc ttgatttagg attatcaagc aacatagggc
    12301 gtatggcgtt ataccaaaga tattctcctt tgctgccttt taaaataatt cctgcttcgt
    12361 ttaaaataac aaggtcatat ccaaaacctt cgatattttc acttctttca gcacttctca
    12421 tatgaagcac tgctccatta ataattagtt tcttatcttg cacactccat gagtaaaaat
    12481 cttttggcaa gttttttaac tcaggtgtaa aatataactc gtaataattt tgtaaatttg
    12541 cttgtatggt atccacccat aaaacatttt gtcctaaaag caagttttcg ataacaaact
    12601 tagcacttcc ccttgtaaaa ccaagtcttc tgccctttgc tacagttata aagcgtggat
    12661 ttttatcatc aaaaacttta agttgtgccg gagtgtaaga aaaatcgatt tttaatttca
    12721 tttgatttca cttcttataa tttcaatttt ttgaacgtta tcgctgacaa cttcttgttt
    12781 atccacatat ccatgttgat tttttagcaa gaacatacta acgctaggag tataagtgcc
    12841 gattaaggaa tggtttaaaa tatccatttc acatttttgc ttagcttgag atacaatttc
    12901 tccaaaatcc ttatccttct cccactcgcc taaagtttgt attgtaattc ctaaatacac
    12961 agctaatccc acttttgttt taggtgcaaa aataatactc tccttagttt cttttaagac
    13021 aactctttca ttaaaataac tctctatttt tgaaacaagc tcttcttttg tcatactttt
    13081 gccatttgtc atcattctag ccatcaagcc accccttctt taaaattaaa ttctttgatt
    13141 tctaagtcta aaaaagattt tttaaaacta ataatctcat aatcgccttt taaaacattc
    13201 ttatcgtttt caaataacgc atctaacacg cattttacga tattgtcccc atcgccatgc
    13261 cttttgctgt taaatcctat ttttaaagaa aactcatatt tcttttgctt atcaaaggct
    13321 tgaaaacagc taatattatt ttgtcttcta aactccattt gcaagagttt tttaaaatct
    13381 aaatatttaa gataatcttt acatgcaaat ttagatcttt gcgtggttct tttataagga
    13441 actgggttgc tttttaaatc aatttttaaa atatactttt ccatttcaga ctttcttaaa
    13501 tttagcttat atttttaaaa gccattttga cttttacttt cttttgaaat tcttcttgat
    13561 tctccttaaa aaattttttc tgcaccttct taaagttatt atattcttct tcatggctta
    13621 aagatgtata tccttttatc ttataagaag tatttatata tatatctttt cctatgcgct
    13681 cttgattttt aaatataaaa tctattaaag cgtgtttaaa ttcgttattt tttagcattt
    13741 ctccatcttc gtaggttaat tctccaaaat tatttagaca aaccaacata ttaattgatt
    13801 ttgctaatcg tttaaaaagg ttgccctgtc catcataaca aacatatgag tatttaaaat
    13861 cactttcaag caatctaaaa aatggactat ttttatattt attttttaac cattctaaaa
    13921 aaatttcttt gtcttcaaaa cgctttttaa actcgatttc agctcttttg caaactcttc
    13981 ttaatttctc ataggttgtc cctacgatat tctctctttc taaagtttcg aaataaaaat
    14041 ctaagaaagc atgaatatcc ttaacgcttt tgagatatct acctacaata tcagttgcct
    14101 gagccttatt aatttccaat aagtccatta aaatttgtat tttttcttgc attttttact
    14161 ccttaaaagc atcctaagag cttgtttttg ttctcatctt tcattccgta atactccatc
    14221 aagctatcaa ccacactagg attggcttct ttttttctgt taaaacgctg attttttctt
    14281 gcttcatttt ctttagcgta tttaagccat gtataaagac ttcctgccac acttgacatt
    14341 ctttttccat ttcttttcca ttccctagca tcccaatagc ctataaaatc attagccaac
    14401 tcttcaccaa agtttgtgcc atttttctca ttaaaagcta ttatttgtct catgagttca
    14461 tttgcatttg ggactttaaa ctcttttttt gccattttct ctaactcctt tttgctaaaa
    14521 tcaataaagc tcgtcacaaa agaggcgttt tgattaaaaa cgcgttcttt cttttcttga
    14581 ttatttttta aattttctaa attctctttt tttataaatt tattattatt aatatttata
    14641 ttatttataa atttattatc gcgtgcgtgc gtgcgtgttt ctatatatag ggatttttga
    14701 tttttttcgt tttcagtggt taattttctg tcgattgatg aagcattatt tttaagagtt
    14761 ttgcttagct tttcatcact gtttttaagc aaagataaag atttgttaaa atgctttttg
    14821 acttgataat tttcatcttt taaaatccac tcataaaaat ttaaagatcc atttctaacc
    14881 tttttaattt ctaaaagcct aagctcgatt aattcttttt tggcaattct taatctattt
    14941 aaactcattc tttgattatt tttaactttt ataaactctc ttagatagat ttcacttaca
    15001 atcgtttttt cactaagctt tgctaattga atatacaatg ccagagcatc aacactaagc
    15061 cctccataag ctatagtgtt tgataatttc aaatagcctt ttctttctct caatcttttt
    15121 cgcccgatag ccacatcaaa gcttgctata aaatttggta tcaccaactc tcctttatgt
    15181 tataatttaa attaaaaagg ttttttatgt ttaattcttt cttatccgaa atgctaaaaa
    15241 ccgccacttt agaaaattta gtatattttt taataggtgt tttatttggt ttaagtatcc
    15301 gtcctttgtt tttatattta actaaaaaac aaaaactaaa aagagtttgt attaaagata
    15361 tgaagctaga aaacgatttg acaaaaagac tatatcctaa cttaggatat aaattagtta
    15421 caaaaaaaac tccttttgaa atggttttta aaaaagataa atttaaatac attatttgtc
    15481 ctcactaccg tgataaaaaa tgcgttttag ataatgataa atgcaagata ttaaaatccc
    15541 agccgaaata ccagccacta gaaacagtct aaaatgcaac atcatcaaag taaaaataaa
    15601 taatcctatt atttcaaata ccctatcaag cattaatcat cctaaaagat tttccaaatt
    15661 aaaaaataaa ctaaaaaaac ctattgaaaa tcccgctata aaagccattt tttaaccttt
    15721 agtttaatca ctttaattct ctatcctttc gctttctccc acgcttaggt atgtttataa
    15781 gattgctacg aacatccacc caaaattcat gaggtattcc atagagtttt ttaaactcta
    15841 tttgtttttt aaagcttggg cgtgatttat ttgttctaat ctttttaaca ctaataaccg
    15901 tatagtgatt actcaatatt tttgtaaaat caaaaaaatc tatttttttc at
//
LOCUS       DAZAND010000030        15889 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.030, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000030 DAZAND010000000
VERSION     DAZAND010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15889)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15889)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15889
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.030"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(38..397)
                     /locus_tag="ACHDOB_000754"
     CDS             complement(38..397)
                     /locus_tag="ACHDOB_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HFN3325687.1"
                     /translation="MKDLDYYLNLPYEIIIKKLDEKDGGGYFARYKDFPYIMGDGENE
                     IEALKDLKEAFKGALEVMLEKGDYIKEPIDNEAKIRINITLPKSLVEAIDTISDNRSK
                     FLADLANSAIKSYKIST"
     gene            complement(401..629)
                     /locus_tag="ACHDOB_000755"
                     /pseudo
     CDS             complement(401..629)
                     /locus_tag="ACHDOB_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881942.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
     gene            complement(1704..1789)
                     /locus_tag="ACHDOB_000756"
     tRNA            complement(1704..1789)
                     /locus_tag="ACHDOB_000756"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1753..1755),aa:Leu,seq:gag)
     gene            complement(1824..2162)
                     /gene="atpE"
                     /locus_tag="ACHDOB_000757"
     CDS             complement(1824..2162)
                     /gene="atpE"
                     /locus_tag="ACHDOB_000757"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HFN3325688.1"
                     /translation="MKKVLFLLLACAAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            2396..3730
                     /locus_tag="ACHDOB_000758"
     CDS             2396..3730
                     /locus_tag="ACHDOB_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFN3325689.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFTSEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFMMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFAFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSISSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFEPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            3743..5083
                     /locus_tag="ACHDOB_000759"
     CDS             3743..5083
                     /locus_tag="ACHDOB_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFN3325690.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFVLSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFILSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAVSMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLGA
                     IVCSIFVGFFMNKKQIYKIFSKFISRKIFLIWLFFIRFISPIAIILVMCYQIFV"
     gene            5116..6915
                     /gene="pycB"
                     /locus_tag="ACHDOB_000760"
     CDS             5116..6915
                     /gene="pycB"
                     /locus_tag="ACHDOB_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HFN3325691.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFAMMDRFRAIVGKDANLQTLARGVNTVTLDTGSSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKYGLKHEITITLMDLPSNCKGAHD
                     VPFYEKILKEILAAEIPFHSICFKDASGTSNPNKIYETIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTIMHALKDKDYDLGGFEEEKI
                     LKYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVAPD
                     ANIIELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFVAAACK
                     EKGIAFLKGEAKVNVRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEVLAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIISELCIKIGDTVNEGEVLAIYKN"
     gene            6928..8502
                     /gene="pckA"
                     /locus_tag="ACHDOB_000761"
     CDS             6928..8502
                     /gene="pckA"
                     /locus_tag="ACHDOB_000761"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HFN3325692.1"
                     /translation="MKKFDNLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKINQPITKELFDKLLTKAKQELSGKKIYVQ
                     DAFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     HEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     IAKCEFENFEVFNLAIPKALEGVESTLLNPINTWLDKNAYTETRDKLAHMFVQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            8512..9894
                     /gene="argH"
                     /locus_tag="ACHDOB_000762"
     CDS             8512..9894
                     /gene="argH"
                     /locus_tag="ACHDOB_000762"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HFN3325693.1"
                     /translation="MKNEMWSGRFSGASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVKSEIEQGKFVFDIKDEDIHMAIEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELLKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYATNRELSAEIL
                     GFKDIMPNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGLFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(9916..11019)
                     /gene="ychF"
                     /locus_tag="ACHDOB_000763"
     CDS             complement(9916..11019)
                     /gene="ychF"
                     /locus_tag="ACHDOB_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HFN3325694.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPEKIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVNENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(11016..12467)
                     /locus_tag="ACHDOB_000764"
     CDS             complement(11016..12467)
                     /locus_tag="ACHDOB_000764"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HFN3325695.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTRTLERFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNITCKIYDEKFLAKEKMNAFLAVNRA
                     SVHPPRLIHLSYKATNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAAMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(12464..13060)
                     /locus_tag="ACHDOB_000765"
     CDS             complement(12464..13060)
                     /locus_tag="ACHDOB_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFN3325696.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(13079..13627)
                     /gene="apt"
                     /locus_tag="ACHDOB_000766"
     CDS             complement(13079..13627)
                     /gene="apt"
                     /locus_tag="ACHDOB_000766"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0006168 - adenine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HFN3325697.1"
                     /translation="MIKLTQEEQKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLKHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(13624..13956)
                     /locus_tag="ACHDOB_000767"
     CDS             complement(13624..13956)
                     /locus_tag="ACHDOB_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325698.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(13956..14393)
                     /gene="rpiB"
                     /locus_tag="ACHDOB_000768"
     CDS             complement(13956..14393)
                     /gene="rpiB"
                     /locus_tag="ACHDOB_000768"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HFN3325699.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKIDERSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            14559..15113
                     /gene="cheB'"
                     /locus_tag="ACHDOB_000769"
     CDS             14559..15113
                     /gene="cheB'"
                     /locus_tag="ACHDOB_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheB methylesterase domain-containing protein"
                     /protein_id="HFN3325700.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDIKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLVKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            15129..>15889
                     /gene="cheR"
                     /locus_tag="ACHDOB_000770"
     CDS             15129..>15889
                     /gene="cheR"
                     /locus_tag="ACHDOB_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HFN3325701.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVGNADLIPETIYFKKIFSP"
BASE COUNT         5144 a         2210 c         2639 g         5896 t
ORIGIN      
        1 aaacggattt ctttttttta tttaactatg tcaattttta agtgcttatt ttataagact
       61 ttatagcgct atttgcaaga tcagctaaga atttacttct attatcgctt attgtatcta
      121 ttgcctctac taagctttta ggcaaggtaa tattaattct aatttttgct tcattatcaa
      181 taggttcttt aatataatca cctttttcaa gcataacttc taatgctcct ttaaatgctt
      241 ctttgagatc ttttaaggct tctatttcat tttcaccatc tcccataata taagggaaat
      301 ctttatatct tgcaaaatat cctccgccat ctttttcatc aagttttttt ataataattt
      361 cataaggtag attaagatag taatctaagt ctttcatcat tcattctcct gttatagctt
      421 ttaaaaccat tttgacatat atagccttta tagggcgttt aaatggaata gtaataagat
      481 cacattcttc ttttcttgaa ttgataatgt gatccgcctt tattaaaaca ttcataacct
      541 tcgctttcta ataaaatctt aagcgtttca aagcgcacat tgttaggatt attttttaaa
      601 tctttaataa ttttatcttt tttactcact ataatatcct tatgagtatg tattatacac
      661 actttttatt aagtatcact tataaaccga tcgcaattct tttaatcttg ttgtctttgt
      721 atgtttaatt gaaagtatta agactgagat tattgagctg cgttttgaaa cggatttctt
      781 ttttatttga cttggaaaaa tgaatgagaa tttgtagttt catgtactaa caaaggcaag
      841 gggcttttct gtcctgcggt tttgttaaaa atacttccat tttaaactta aaaaacctaa
      901 agtttagata taatctcaca aaacgcttac tatgtcgttt catagttagc cttgattgat
      961 aaatttccgc caagagtgaa aactcaaggc ggatttttta ttatagcgaa tcttgttttt
     1021 tgcttttcta attttttacc aatcttttct atttttttgt aaaagtattt ttgctatgaa
     1081 tttctcataa ccgaaagcca cgtctctttc ggttaaatgt tttttagtat aaatgtatta
     1141 agcttagact aagcgtggtt tttataaaat ttttcaatga ttatatcaaa tgagcttgat
     1201 tatctcatta attaattcta agacaagaac taaaaattca atgatcttac tcatcatgtc
     1261 tctttcttgt aaccgaaaga gtagccatgc ctaatatgct ttaattatag tatttttgaa
     1321 taaatgtttt atcatcttat tgattatttg tgtgatagaa tttcctttcc gcaaatcaat
     1381 gtaccttaat acttttagtc tcttgttaat tttcttattt ttggatatct ttataatcaa
     1441 atacaaaaaa cttcttataa aaatagtttt tatctttttt attatgtctt tttgtgtaag
     1501 catttaaaat aaactcctta agctaatttc tcctaacttt ttaaaacaaa aaataaaaag
     1561 ttaggagaaa agttagggaa aaatttttaa aatggatttt aacggaaaaa tttaatttag
     1621 attttagata gttttaaagt cctattttat agatattttt taagttttat atttatgtta
     1681 atttatgtag ttagcagtat aaatggtgcg gttagcgaga tttgaactcg cacacgcgga
     1741 gcgcaccacc ccctcaagat ggcgtgtcta ccaattccac cataaccgca tagaaaaaag
     1801 cccaaaaagg gctttgataa gttttattgt aaaactataa aaggatttgc gtaaagtgct
     1861 attagcgcga taacaagagc atagataact tgtgcttcaa tcatcgctaa agcgataaac
     1921 atagttgtca ttaattttgg cccaagacca gggtttctag ctgttcctgc aattgttgcc
     1981 gctgcagtat tacccatacc gatagcacca ccaagtgctg caacgccaag acctaagcct
     2041 gctgcaagaa ctgaaaatgc tttaatccat acattaatag cttcttgctc tactggagca
     2101 ttagtttcag ctgcaaaagc tactgctgca catgctaata ataaaaaaag aacttttttc
     2161 attatcttaa cctttctata aaaaaaattt ttttcaattt ttaaatcagt tcggcttgcg
     2221 tatccctact taagacttaa aaataaagcc gaattataac caaaagtatc tttattttta
     2281 ttgaaattta caaaaattca catttttgat ttaaatttga ttgttttcaa taaagcttaa
     2341 aagttttttt gctttaataa tattttaaaa taatttttaa gttaaggttg caacattgag
     2401 ttctaaattt tcaaaaatag gtttcatttt agcggtagca ggttcagcag tgggcttggg
     2461 taatgcttgg aaatttccaa cactagtagg tcaaagtggt ggatctgctt ttatcttgct
     2521 ttatataatt cttactttgg gtgtaggttt tgtgatattt ttagctgagc ttagcatagg
     2581 aaaaattagt gaaaaagatc cggttaatgc ctatgaaaag ttagcacctt caaataaaaa
     2641 agcttggtct tatgttggtt ttactatggt gggggcgatt ttaatagttt ctttttatac
     2701 cttggtgatt ggctggatag ttaaatatgt gtttttaagt atcactggaa atttgcctat
     2761 ggatctagaa gtaagtaaag cacagtttgg attttttaca agtgaggatt ttttaagtca
     2821 gtttatttgt tttactttgg tttttttatg tgttttttat attgtttcta aaggtgttaa
     2881 gaatgggatt gaaaagttaa atgtttggat gatgccttca ttatttattt tactaatctt
     2941 gatgcttgtt tatgctatta gtaaagatgg ttttatgatg gcggttaaat ttctttttgt
     3001 gcctgatttt tccaaaatca acacttcaaa tgttcttgaa gctttaggac ttgccttttt
     3061 tagtctttct ttgggtgttg ggacgattat tacttattct gctagtctgc ctgataaaac
     3121 taattttatt accagtactt taaatattat ttttatcaat cttttagttg gtctattaat
     3181 gggtttggtt gttttcactt ttatctttga atttggttac aatcctaatc agcaaggacc
     3241 agggcttgtt tttatttcct tggctacttt atttgaaaaa attggggtga tcggttgtat
     3301 ttttggagca gcgtttttta tttctttaat ctttgctggt attacttcag ctgtttcaat
     3361 gatagagcct tttgcttttt atcttattaa tacttttggt atgagccgta aaaaagcttt
     3421 gattttaata ggaattgttg tttatatttt aggaatgttg tgtattttat cttctttaaa
     3481 aagtactcag tttggatttt ttggaatgag tttttttgat ttgcttgata gtatttcaag
     3541 taaggttatt atgcctttag gtggaatttt ggcagctatt tttgtgggat ttgtgatgaa
     3601 aaaagaagct ttaaaaattt tatttgaacc ttatatgagg ggtatatttt ttgaactttg
     3661 gtatgtgttt ttgagattta tttccccttt ggctgttgtt atagttatga tagccgcttt
     3721 tttaaagtga gtttgaaaaa taatgagaac atatttttca aaaatcggtt ttgtattggc
     3781 tgttgctggt ggagctgttg gtttaggtaa tgcttggaaa ttcccaactt taagcgcaga
     3841 aaatggcggt tttgtttttg tgcttttata tttgtttttt actttaacca taggatttag
     3901 tatttttttg gctgaagtgg ctatgggacg tttaagtaaa agtgatcttg caaatgctta
     3961 ttcaaatctt gccataaaat atggcaatag atggcgatat ggcggcgttt ttatgttagg
     4021 tggtattttt gttctctctt tttatctagt tattatggga tgggttttaa aatatactgt
     4081 agttagtctt tattatcttc ctaaaacctt agatgaagca gcaagtaatt ttcagaattt
     4141 aattactaca aatttgacaa gttctgtttt tttcttcatt ttatcttttt ttcttacttt
     4201 attaatagta tctaaaggtt taatcaaagg gattgaaaaa ttaaacgttg ttataatgcc
     4261 tagcttattt ttaatgcttg tttttatgtt gttttattgt atgggattta agcaaggttt
     4321 tgcaaatgct ttttcttatt tattttatcc tgatttttca cattttaaat ttagctctat
     4381 tgccgaagct ttagggcttg cattttttac cttatgcttg ggaataggtt gtatagttac
     4441 atattcatca gccttggata aaaaaacaaa ttttataaaa agttcagtgt atattgtttt
     4501 gattaactta ttgatttctt ttatcatggg acttattgtt tttactttta tctttgaatt
     4561 tggagccgat ccgcatactc aaggagcagg aattgttttt gtatccttga tgagtttgtt
     4621 taatcaactt ggagctttag gctatatttt tgcattttgt tttttcttag cacttttttt
     4681 tgctggtatt acttcagctg tttcaatgat agagccttta actttttata tgattaataa
     4741 ctatcaaatt tctcgtgtta aagctctatt tttaataggt ttatttgttt ttgtttttgg
     4801 aatttgttgt atcttgtcat taaatttaaa ttttttttct atgtttagtt tttttggcaa
     4861 agattttttt actttattag ataaattaac ttcaaatttt ttacttccac ttggtgctat
     4921 agtatgctct atatttgtag gtttttttat gaataaaaaa caaatttata aaattttttc
     4981 taaatttata agtagaaaaa ttttcttaat ttggttgttt tttattcgtt ttatatcgcc
     5041 tatagcaata attttggtaa tgtgttatca aatttttgta taataatgaa aaaatatttt
     5101 ttttaaggaa aaataatggc taaaaaattc atcgatgtaa tggatacaag ctttagagat
     5161 ggttttcagt ccgtttatgg ggctagggtt ttaatggatg atttttttcc tgcagtagaa
     5221 gcagcaaaag aagcaggcat tacacatttt gaatttggcg gtggtgctag atttcaaagc
     5281 ttgtattttt atcttaatga agatgctttt gccatgatgg atagatttag agctattgta
     5341 ggaaaagatg ccaatcttca aactttagca agaggggtca ataccgttac tttagacact
     5401 ggaagtagtg agcttattga tttgcatgca aaactttttg caaaacacgg tactacaacg
     5461 ataagaaatt ttgatgccct taatgatgta aataatttaa aatttagtgg tgaatgtata
     5521 gtaaaatatg ggttaaagca tgaaattact atcactttaa tggatttacc gtcaaattgt
     5581 aaaggtgccc atgatgtgcc tttttatgaa aaaattttaa aagaaatttt agcagcagaa
     5641 attccttttc atagtatttg tttcaaagat gcaagtggaa cttctaatcc aaataaaatt
     5701 tatgaaacca ttaaaatggc tagaaaaatt ttacctcaag atacacacat taggcttcat
     5761 acgcatgaaa ctgcaggagt gagtatagct tgctatcttg cagcacttga agcaggtgtt
     5821 gatggtatcg atttggctgc agctcctgta agtggtggaa cttctcagcc tgatatttta
     5881 accataatgc atgccttaaa agataaagat tatgatttag gtggatttga agaagaaaaa
     5941 attctaaaat acgaagaagt tttaaaagat tgtttaaaag agtatttttt accccctgaa
     6001 gctactatgg taaatccact tattcctttt tctcctatgc caggaggagc tttaacggca
     6061 aatacacaaa tgatgaggga taataatatt ttagataaat ttccacaggt cattcatgct
     6121 atgagagaag ttgtagaaaa aggtggattt ggtacttcgg ttactccagt ttctcaattt
     6181 tattttcaac aagcatttaa taatgttatg tttgggcctt ggaaaaaaat cgcagaaggt
     6241 tatggaaaaa tggtgcttgg ttattttgga aaaactccag ttgcacccga tgcaaacatt
     6301 attgagcttg cttcaaaaca acttaattta gaacctacta cagagcttgc tataaatata
     6361 gctgataaag atgagagtaa aagtatagct tataccaaaa ccttgcttga aaaagagggt
     6421 atagaaacga gtgaagaaaa tatatttgtt gcagcagctt gtaaagaaaa aggtatagca
     6481 tttttaaaag gagaggcaaa ggtaaatgta cgcaaattag ccagtatgcc aaaacctatg
     6541 agtgtagatg aaaacaaatt taccgtagct gtaaatggta ataaatatca tgtagaagta
     6601 agttatggtt ttgataaaga tgttaatgtt aaaagtgtga aaaaagtaga agaaaataaa
     6661 aatattattt cttcaaattc gacaagttct gtcgatgctg aaaatgaagt tttagcgggt
     6721 atttcgggta atgtttttaa aatttatgtt aacgaaggcg aagaagtaaa atcaggtcaa
     6781 gctatcatgg ttttagaagc aatgaaaatg gagattgagg ttaatgctcc aaaagatgga
     6841 attatttcag agctttgtat taaaataggc gatactgtta atgaaggcga agtattagct
     6901 atttacaaga attaaagtga gagaaaaatg aaaaaatttg ataatttagg tttagataat
     6961 ataaaggaaa tttttcataa tttaagttat gatgaattaa atgctcatga aaaagcaaat
     7021 aatgaaggtt taagcacgga taatgatact ttttgtgtgg atacgggaat ttttacaggt
     7081 agaagtccta aagataaata ttttgtaaaa caagatccat ctagtaaata tatagcttgg
     7141 gggaagataa accagcctat tacaaaagaa ttatttgata aacttttaac taaagcaaag
     7201 caagagttaa gtggaaagaa aatttatgtt caagatgctt tttgcggtgc ttctttgcaa
     7261 agtcgcaaag cagtaagatt tgttactgaa attgcatggc aagcgcattt tgttaaaaat
     7321 atgtttattc gcccaagtca agaggaactt gagaatttta aagcagattt tattgtttat
     7381 aatgcttgca aatgtattaa tgaagattat aaacaagatg gtttaaattc agaggttttt
     7441 gtgatcttta atgttgaaga aaatatagcg gttattggtg gaacttggta tggtggagaa
     7501 atgaaaaaag gtattttttc tatgatgaat tattggttgc cactagaaaa taaactttct
     7561 atgcattgta gtgcaaatgt cggagaaaaa gacgatgtgg cacttttctt tggacttagc
     7621 ggtacaggaa aaactacgct ttcaaccgat ccaaaaagaa gactcatagg tgatgatgag
     7681 catggctggg atgatgaagg tgtgtttaat tttgagggcg gttgttatgc aaaaacaatc
     7741 aatcttgatc ctgagcatga gcctgaaatt tatggcgcga ttaaaagaaa tgcactttta
     7801 gaaaatgtag ttttaagagc tgataagagt gttgattatg ctgatgcttc aaaaacagaa
     7861 aatacgagag tttcttatcc tatagagcat attgaaaatc atgagcctag cttaaaagca
     7921 gggcatccaa aaaatattat atttttaagt gcagatgctt ttggaatttt gcctccggtg
     7981 agtaaattaa gcaaagaaca ggctatgtat tattttttaa gcggttatac agcaaaagta
     8041 gctggaactg agcgtggtat aacagagcct caagcaactt tttcagcttg ctttggagaa
     8101 ccttttatgc ctttacatcc aacggtttat gcgagattgc ttggtgaaaa gattgaaaaa
     8161 catgaagtta atgtttatct tgttaatacg ggttggagcg gtggaagtta cggtgtaggt
     8221 aaaagaatga gtattaaggc tactagggct tgcattaatg ctattttaga tgggagtatt
     8281 gcaaaatgcg aatttgaaaa ttttgaagtg tttaatttag ctattccaaa agctttagaa
     8341 ggtgtagaaa gcacgctttt aaatcctata aatacttggt tagataaaaa tgcctatact
     8401 gaaacaagag ataagctagc acatatgttt gtgcaaaatt tcaaacgcta tgaagatgtc
     8461 aaagaaggta ttgaatttag caaatttgga ccaaaaattt aaggtattta aatgaaaaat
     8521 gaaatgtggt caggacgctt tagcggtgca agcgatgagc ttttaaaaga atttaatgcg
     8581 agtttaaatg tagataaaac tttgtttaat gaagatatac aaggatctat agcgcatgct
     8641 acaatgcttg aaagttgtgg tattttaaaa aaagaagaat tagatgctat tataaaaggc
     8701 ttagaacaag ttaaaagtga aatagagcaa ggtaaatttg tttttgatat caaagatgaa
     8761 gatatacata tggccataga aaagcgttta agcgagatta taggcagtga aattggtgga
     8821 agactacata ctgcaagaag tagaaatgac caagtggcta ctgattttaa actttttgta
     8881 aaaaaatctc acatagaact tttaaaactt ttaaaagaat tgattcaaac catgctcgaa
     8941 catgctaaag tgcataaaaa aactattatg ccaagtttta cacatttaca acacgctcag
     9001 cctgtgagtt tttcttttta tatcttagct tatgctttta tgttaatgcg agatattaag
     9061 cgtttacaaa atagcctaga acttgcagac ttttcgccac ttggttcttg tgcatgtgca
     9121 ggaacaagct atgctaccaa tcgtgagttg agtgctgaaa ttttaggatt taaagatatt
     9181 atgccaaatg ctatggatgg agtgagtgat agggattttg ctcttgattt gctttatgat
     9241 atagcagtta tttttacaca cacttcaaga ctttgtgagg aaatgatttt attttcaagc
     9301 tcagaatttt cttttataac cataagtgat agtttttcaa cgggaagttc tattatgcct
     9361 cagaaaaaaa atcccgatgt ttgtgagctt atacgtggaa aaacagggcg tgtttatgga
     9421 aatttgattt ctctcttaac tataatgaaa gctttacctt tagcttataa taaagatatg
     9481 caagaagata aagaggggct ttttgatagt gtaaaaacgg ctaaagatag cttaattatc
     9541 ttaaatgcaa tgttaaaaga aatacaaatc aacaaagaaa atatgcttaa tgcttgtaaa
     9601 aaaggtcatt tgttggctac cgatttggca gattatttgg tgcgtgaaaa aaatattcct
     9661 tttagaaaag cacattttat agtgggaaat gttgttgcac aagctgaagc acaaggcatt
     9721 gatataagtg aaattaaaga tctttcaaaa atagatcctg tatttgatga aaaagctatg
     9781 gaacttttaa attttgaatt ttctttaaat tctaagcaaa gtgaaggctc aagttctatt
     9841 gcaagcgtag aaaagcaaat tcaaattttg gaaggtttta ttcaaaattt ataaatattg
     9901 tttaggctat tttgcctaaa cattgaatct aaaatgcatt acatcgccat ctaaaacgat
     9961 atagtctttt ccttcaaggc gtagctttcc tgcttctttg gcgccatttt cgcctttgta
    10021 ttggatataa tcttcatagg aaataacttc agcttttatg aaaccttttt caaagtcatt
    10081 gtgaattaca cttgctgctt ttggtgcttt ccaacctttt ttgattgtcc aagaacgcac
    10141 ttcaactaca ccagcggtaa aataactgat cagtccaagc ttagcaaaag cagtgcgtat
    10201 gatttgatca agaccgcttt cgttaactcc tagagaactt aaaaattcat gactttcttc
    10261 atcacttaat cctactaatt cttcttcgat ttttgcacaa agcttgataa cttcatgatc
    10321 atttttttta gcatattctt ttaaagcttt tacataatca ttatcttcac taataccatt
    10381 ttcattaaca tttgcaccat aaatcacttc tttagcagaa agcagtctta attctttgat
    10441 taaggcttga taaatttcac tttctttttc agggtaagaa cttgcagcta agcctttgtt
    10501 taaatgatca agtaaggaat ttgcaagttc gagactttct ttagcaccct tttgattggc
    10561 tttggcttct ttggtgagtt tttctatttt tttactaagt tgctcaatat ctgctaaaat
    10621 aagctctgta ttgataattt ctacatcacg taaaggatca actccacctt caacatgggt
    10681 gatattttct tcatcaaaac aacgcactat gtgtaaaata acctcagttt cacgtatatt
    10741 tgaaagaaat ttatttccca agccttcgcc tttacttgca cctttaacaa gtccagcgat
    10801 atctacaaat tctattaaag aatgcataat tttttcaggt tttacgattt tggcaagttc
    10861 attaagtctt aaatcaggaa cttcaaccat ggctttgtta ggctctatgg tgcagaaagg
    10921 atagtttgcg ctttgggcat tttgtgcttt agttaaagca ttaaaagtcg ttgatttgcc
    10981 aacatttgga agtcctacta tacctacact taaactcatt tagctttcct taaaatttga
    11041 attaaataat taacgcacat tctaactcca gctccacctg cgccaaaact agaatatccc
    11101 caagattttt ctgtataagc aggtcctgct atgtcaagat gtagccattt gtctttatat
    11161 tctttacgaa taaatttatc taaaaataat cctgcggtaa ttgcacctcc gtagcgacta
    11221 gaggcagtgt tgctaacatc agcaatattt gattttataa gttctcttaa gtgagggttg
    11281 aaatgtaaga ttgtggtata ttctccactt tttttggagc ttagataaaa atcattttgc
    11341 aattcttcat tatttcccat aatagcgctt gtaaattctc caagtcctac aacgcaagct
    11401 ccagtaagag ttgccatatc gataagtaaa tcaggtttta aatcctgtgc aaaagaaaga
    11461 caatcggcta aaaccaagcg tccttcagca tctgtatttc ttacctctat gcttacacct
    11521 tcacgactga ttaacacatc atcaggctta taagcattgc cgcctatcat attttcagtt
    11581 gcacctaaaa tgcaatgcac ttctaaatct aaagcaagtt cagctacggc ttttatgatt
    11641 cccattgctg ctgctgcacc gcttttatca gctttcattg taagcataaa atcagctggt
    11701 tttaagctta atccaccgct atcgtaagtt aagccttttc caacaaatac aacacgtttt
    11761 tttgcatttg tggctttata acttagatga atgaggcgtg gaggatgtac tgaggcgcga
    11821 tttactgcta aaaaggcatt cattttttct ttagctaaaa atttttcatc ataaatttta
    11881 caagtgatgt ttttattttc tttagctaaa ttttgtgcat cttctgccat ttttaaaggg
    11941 gtgtaaattt caggaatttc attgactata tttttggtaa aatttgtagc attggctaaa
    12001 atttctccac gctctaaacc tatcttagct tcatctttat taaatttttt accatttaat
    12061 tcttcacttg aaataataaa tctttctaaa gttcttgttt ttttctcgct tttatatttg
    12121 tcaaatttat aagctccaaa aagtacgcct tcaactaaag atgcaaaact tctaactaca
    12181 caatctccta ttatgctagg aagttttacg cttttaatat taagtttctc aagagtttta
    12241 tatgctgtgc aaagacttaa tcttatatcc tcataagcaa gacttttaag ctctaaataa
    12301 agctttttat tgtttaagtc taataatgca ccttcacctt tgtaattatt aagtttaaaa
    12361 aaatcttttt ctttgttaaa aatttttaaa tttttatcct gtataaaaac aagttcaaag
    12421 tctgctttta tagcatctag ttttttatcg tttaattcaa atttcatgat tttttccttt
    12481 tatctttaag tatagctttt tccatttgtt taaaaccaaa taataaaagg gataaaaaag
    12541 ctataataat aatggctgca taataccaat gttcttcagc ccaagtcacc atcttccaaa
    12601 tttgttctcc aaaataccaa gctaaaagta tagtgattga tgcccaaacc caagcactaa
    12661 aaagattgat aatagcaaat ttttttgcac tataacgcgt gattcctata ctcataggta
    12721 taatggttct aaagccatac atatagcgtt gtataaaaat aataggccaa ccaaaacgtt
    12781 gtaaaagtag gtgtgctact gcaaatttac gcctttgagt ttttaatttt ttttgtatgt
    12841 agcgtttatt atatcttcct atatagaaat aaatttgatc gcctacaaaa ccgccaagac
    12901 ctgctataaa tataacaaag cctaaattta catgtccttg atgggcaaaa atacctgcta
    12961 aaattaaagc taactctcct tctaaaatac accataaaaa aataataata taagctagat
    13021 ctttgtattg gtaaagtaaa ttttttaaaa attcttccat ttgtaccttt ctatagtttt
    13081 aaatttctaa aacactataa actgaagtaa gtttttcaag tttatttgct ccatttaaat
    13141 ctttaagatt cattaaaaaa caagcttcaa cacattttgc tccagctttt tgaatgagtt
    13201 catatgaagc tatagctgtt ccgccagttg ctattaaatc atctacaagt aaaactcttg
    13261 cattttgaat atttttaaat gcatctttat gaagttctac tttatcgctg ccatattcaa
    13321 gatcgtattc gcagctaaag gtttcaaaag ggagttttcc aggttttcta ataggcacaa
    13381 aaggaagatt aagttttgca caaatcatag atgcaaagat aaatcctctg ctttctgttc
    13441 ctgctatgaa gtctagattg taatctttgt agcgttcttt taaatgttta agtagaaaat
    13501 ttaaagcctc tttgttattt agtagagtgg taatatctct aaagataatt cctttttttg
    13561 gaaaatcagg aataattcta atgctatcaa gcaggtattt ttgttcttct tgtgttagtt
    13621 ttatcataat aatgcctcga tttttgcttc taattcttta attctttgtc ttaatttgtc
    13681 attttccaaa cgatattgag aatttctagt tcttaaagat gtaaggtctg ctttgatttt
    13741 attaagttct tctgtgagta tatctatatt tccaagactt ctttgaagtt gaatttgtag
    13801 ttttctaatg acaatctcag tatcatcaag attgtttttg ataaaatctt ttgatgtttt
    13861 ttctttatta agtagagttt tatagtaaaa caacattaca ataagataga tagttgcaca
    13921 aatcaatata gttaaaacaa gccagtttgt aaacattata tttttacctc aattttttga
    13981 attctttgca tatgtctccc ttcttcaaaa ggagtttgaa tgaatttttc tataatatct
    14041 atagctaatt caaccccgat taatcttccg cctaatgcca aaacattggc atcattatgc
    14101 cttcttgcaa gttctgcact taagctttca tgacataatg cacaacgaat gtttttatga
    14161 cgatttgctg caatagaaat tccaattcca cttccacaaa taagaatgcc aaagcttcgt
    14221 tcgtctattt tttcggcaag taaatgtgca taatcaggat aatcgcagct tgcgcaagtg
    14281 tttgttccta aatcgttaaa aattatattt ttttctttta aaaatacgca aattttttct
    14341 tttaattcaa aaccagcatg atcactagca atataaattt tttccctaag cattggtttc
    14401 ctacattact atataaaata agataaaaac ctaatcttat catattaaat cataaaaaca
    14461 gcttttcttt ttttaaaaat aagctttatt tttctttata tatgttagaa ttacgtgaca
    14521 agaaaaataa aatttcaata aattaagggg agaagaaaat gaagctcata ctcataggat
    14581 cttcaacagg tggtcctaat cagcttaaat ttcttttaaa ggatattgat ataaaaaata
    14641 cttgtgtagt tatagctcaa cacatgagtg ccagttttat tccatctttt gtggggcaat
    14701 ttaataaaga agcttttagt gaagtgtgct tattgaatga taaagagata ttaagcaata
    14761 aaatttatat ttgccctaaa aatactattt tatctggaaa tttaaatatt gtagccgctt
    14821 ggcaagatgt ggcttcaagc tttaaaccga gtgtggattt actttttcat tccgctgttt
    14881 ctttggtaaa aacaaataaa atacttgcta ttattttaac gggcatggga gatgatggtg
    14941 caaaaggttt atttgagctt tataaaacag gagttagatg tttatgcgag aatgaagcag
    15001 atagtgtcgt ttatggtatg ccaaaaagag caaaagatat gaatccgcat ttaaaaccta
    15061 tgagcttaaa agaaattaaa aaagaaattg taaattttat tgatcaggat taataaaagg
    15121 aaaattgcat ggaaaaaaaa ataactccta gcgaattgga acttaatgaa tttataaaaa
    15181 ttatcaacga aatgagtggt attgatttaa ccgataaaaa aaatatacta gctttaaagt
    15241 tgaataaatt tcttgaagga actaatacta aaaatttttc cgaatttttg ggaaaattaa
    15301 aaagcaatag acaacttaaa caagaaactt tagattttgt aaccataggt gaaacttatt
    15361 ttttaagaga attggctcaa ttgaaagaaa taatttatta tgccaaaagc ttagaaaaga
    15421 gagtaaatat cctaagcgcc ccttgttcaa gtggagaaga agtatattct ttggcattat
    15481 tggctgcaca gaattttatt aaagatatgt atattttagg cgttgatatt aattcaagtg
    15541 tgattgaaaa agcaaaactt ggaaaatatc aaggaagaac tttacagcga ttgagcgaga
    15601 gtgaaaaaag aaggtttttt ttagaaagcg aagataaatt ttatactatt aataaaaatg
    15661 agctttgtac ttgtaaattt gaactttgca atgtttttga agaaaaattt tcaagattgg
    15721 gaaaatttga tattatagct tctagaaata tgattattta ttttgatcat gaatcaaaac
    15781 taaaacttat ggagaggttt catagaattt taaatgataa aggaaggctt tatgttggca
    15841 atgctgattt aattccagag actatttatt ttaaaaagat tttctctcc
//
LOCUS       DAZAND010000031        15836 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.031, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000031 DAZAND010000000
VERSION     DAZAND010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15836
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.031"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            68..1204
                     /gene="pseA"
                     /locus_tag="ACHDOB_000771"
     CDS             68..1204
                     /gene="pseA"
                     /locus_tag="ACHDOB_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HFN3325702.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEVKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRPSDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEKEFQKIVDSFTNKKIFKRDENGKFLRDYDGSLVRKDECVLK"
     gene            1201..1806
                     /gene="hisH"
                     /locus_tag="ACHDOB_000772"
     CDS             1201..1806
                     /gene="hisH"
                     /locus_tag="ACHDOB_000772"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HFN3325703.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFARL"
     gene            1807..2553
                     /gene="wbuZ"
                     /locus_tag="ACHDOB_000773"
     CDS             1807..2553
                     /gene="wbuZ"
                     /locus_tag="ACHDOB_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016833 - oxo-acid-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl amidation-associated protein WbuZ"
                     /protein_id="HFN3325704.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGRAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(2518..2991)
                     /gene="pseH"
                     /locus_tag="ACHDOB_000774"
     CDS             complement(2518..2991)
                     /gene="pseH"
                     /locus_tag="ACHDOB_000774"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HFN3325705.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFKEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(2988..3812)
                     /gene="pseG"
                     /locus_tag="ACHDOB_000775"
     CDS             complement(2988..3812)
                     /gene="pseG"
                     /locus_tag="ACHDOB_000775"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HFN3325706.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            complement(3796..4494)
                     /gene="pseF"
                     /locus_tag="ACHDOB_000776"
     CDS             complement(3796..4494)
                     /gene="pseF"
                     /locus_tag="ACHDOB_000776"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070567 - cytidylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HFN3325707.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            4573..5787
                     /locus_tag="ACHDOB_000777"
     CDS             4573..5787
                     /locus_tag="ACHDOB_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HFN3325708.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     VNGILKNINLGHLSVNKDNFEQIIPLIEQKVNKMKQAGLVDESQKIELSCDFIPPNGD
                     YQNYGIMAAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLSLLIAKIAPWYVDGVI
                     DNSGVCLPFLACILGREMNQGEFYFEGSGYRLYCFVYKYWNRNMNSSYYFGDENYLIR
                     AVLNSNHLQIQSNLNKNTIFVSYHSIQDMGAPVQNKIELYKCYQELGYDATLHLIKDE
                     NDIDGRFVKSLEHGLRMTDRALFRKELPLMLEKLQGRKSFMQENSISYPCGNKVFVFK
                     DLEDKFELEMIN"
     gene            5809..6879
                     /locus_tag="ACHDOB_000778"
     CDS             5809..6879
                     /locus_tag="ACHDOB_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFN3325709.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGTELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKAYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHMLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(6876..7103)
                     /locus_tag="ACHDOB_000779"
     CDS             complement(6876..7103)
                     /locus_tag="ACHDOB_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFN3325710.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLETAMKD"
     gene            complement(7143..8651)
                     /locus_tag="ACHDOB_000780"
     CDS             complement(7143..8651)
                     /locus_tag="ACHDOB_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HFN3325711.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFVKERKEITYKDFDLFSKK
                     LASEILKTLGNDNPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLIKHAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNALKKMLFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHVNIKNSACIFKEDI
                     ICFYESEEEINFKDFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            8712..9941
                     /locus_tag="ACHDOB_000781"
     CDS             8712..9941
                     /locus_tag="ACHDOB_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HFN3325712.1"
                     /translation="MLINQSFEIDSCDDVELNIKRTSKLEYRISYDDEKEIKAIVFII
                     GGYGANANIYFLDSYRNYIAKNFDVVAVHVFYHCFCQRRSDVEKYSTLADFTKDDLKL
                     IEKVLRKYNIPCDQLANNTVVSHCEYLSEIMTELKMLNRLPYDFEERLSATFIPSRRE
                     YQNFGIMAAIDHINALKDLVKRFPKLADLPKIYGGGSYGGYLALLIAKIAPWYVDGVI
                     DNSGSAVPPLNYIIGRELEFKSKDTNGDMYMQGDHFFVSCFLKTHWTRKENSPYFFNN
                     ENYFIRTLLNKDHLILQSQKNKNIIYVSYHSKEDPLTPANFKELTMQILKILGYDVSL
                     NLIDENKIDGKFIKNLDHGCGIPDKALFRKELPLMLEKLQGRKSFMQENSISYPCGNK
                     VFIFKDVGDKFELVIKD"
     gene            complement(9955..10176)
                     /locus_tag="ACHDOB_000782"
     CDS             complement(9955..10176)
                     /locus_tag="ACHDOB_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFN3325713.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(10176..11237)
                     /locus_tag="ACHDOB_000783"
     CDS             complement(10176..11237)
                     /locus_tag="ACHDOB_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HFN3325714.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTVAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPTLLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKNILIYTKEK"
     gene            complement(11227..12789)
                     /locus_tag="ACHDOB_000784"
     CDS             complement(11227..12789)
                     /locus_tag="ACHDOB_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFN3325715.1"
                     /translation="MNLFSPHLKRNGLIKFAKELDFSKSQDLLVNIHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFEIRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKITGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            complement(12789..13697)
                     /locus_tag="ACHDOB_000785"
     CDS             complement(12789..13697)
                     /locus_tag="ACHDOB_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFN3325716.1"
                     /translation="MLKNTKKLFKLIEEKNALHKKCLDGLQLSDEEYNDLEKLIIYYK
                     DTLNINLEEQAKSYIVVLNDTLEETKYFIEFGKYRYSTLAEVKNMVYFNENYMKQYMV
                     GLAISSFIWNAHIEVRRYFAKYIDKKQDRKSTYLEIGPGHGEFFVKALRSQKFIEYYG
                     IDISPISCQMSKDMVENQFGAINQNNFKCDFICKDFTKCNFNNKADLVVMGEVLEHVE
                     QPLQFMKDVKTLLNDGGEIFATIPINAPAIDHIYLFSHPDEVKDLLKNAGLKIKECEY
                     FMANNYSLEKALKTKNAIVMAVVLEK"
     gene            complement(13691..13915)
                     /locus_tag="ACHDOB_000786"
     CDS             complement(13691..13915)
                     /locus_tag="ACHDOB_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFN3325717.1"
                     /translation="MMKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFSKDELSQLKSQNELLKAIKEKLC"
     gene            complement(13912..14697)
                     /locus_tag="ACHDOB_000787"
     CDS             complement(13912..14697)
                     /locus_tag="ACHDOB_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046353 - aminoglycoside
                     3-N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAC(3) family N-acetyltransferase"
                     /protein_id="HFN3325718.1"
                     /translation="MKYFLEHNDKKYSDKDLIDAFYQLGIKRGDILCVHTELFKFGIP
                     LLSRNEFLQTILNCFFEVIGQEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLAKENGKYIIFGLNEGHA
                     LVHYAEEKNTTFCRYFKNFKGILINEKRKEKTITIDYYVRDLQQSYLCDINKINPIIQ
                     ETQNYKKINFAKNFIEIYNTREYVQAICQALTNDKLAIYKKDR"
     gene            complement(14694..>15836)
                     /locus_tag="ACHDOB_000788"
     CDS             complement(14694..>15836)
                     /locus_tag="ACHDOB_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HFN3325719.1"
                     /translation="HSIKSGTKVFDWIVPDEWNAKEAYIITPEGEKICDFKKHNLHLL
                     NYSEAIDKEIELEELQDHLYSIEEMPDAIPYVTSYYKRRWGFCLTHNERKKLKKGKYK
                     VYIDAKHDENGVLDYADFILPSTQNSKDEILISTYLCHPSMANNELSGPVVAIFLAKW
                     LLGLKERKYNYRFVIIPETIGSIVYLSKHLEHLKKYVKAGFVLSCLGDDHAYSLIHTP
                     KENTLSDKVALHTLKNKENFKAFSFLDRGSDERQYNAPLVNLGIVGVCRTRYLEYEQY
                     HTSKDNLNFISEKGLMGGLQSMQEMILNLEINAVYKNTIVCEPNLGKRGLYHTLSTAN
                     DIPLACNFLAYCDGENDIIDIANILNMQAYEFKELLKKIKFYGLVK"
BASE COUNT         5344 a         2216 c         2505 g         5771 t
ORIGIN      
        1 atataaaatc ataaaataaa atttaattat aacgatatat atatttaaga ctaattaaag
       61 gaaatttatg aaattttgta aaaaatgtgt gatgccagat actaagcctg atttacattt
      121 tgatgaagaa ggtgtttgtg atgcttgccg ttctcaagaa gttaaaaatc aaaatattaa
      181 ttggcaagaa agagaaaaag aattttttga gcttataaaa aaatacaaaa aacatcctgt
      241 ttatgattgt gttatcggag taagtggcgg aaaagattct acttttcaag tggttaaaat
      301 gcttgaactt ggacttaatc ctttgtgtgt gtgttttgag cctagcgtac ctacgaaaat
      361 agggcgcaaa aatttagaca atttaaatca tcttggcgtg gatttgatcc atatcaagcg
      421 tgatccaaaa gtttatcaaa aacttgcccg tgaagctttt ataagaacag gggataatga
      481 gtggcaaaac catttgggaa tttttacttc tgttccacgc atagcggtaa attttggagt
      541 acctttgatc atctggggag aaagtccgca gatagagtat ggcggtcctg cgagtagtaa
      601 aaataagaat attttaggca gagagtggct tgaagaattt ggcggacttt taggaaaccg
      661 tccttctgat atgcttgggg taaatggcat cactgaaaaa gatttgtttt tatatactta
      721 tccaagtgat gaagaacttc aaagagtagg ggttactggg ctatttttag ggtattattt
      781 taaatgggat tataaaaaaa ttcttgaaat ttctaaaaaa tatggttttt taactctaga
      841 tcatcctgtt gagactactt atgaaaattt tgaaaattta gattgttatt ctaatcatgt
      901 gcatgattat ttaaaatact gcaaatacgg ctttggtaga gcaacggata atgcttgttt
      961 ggatattcgt ttaggttata tcagccgtga agaaggggtg cgtttggtac aaaaatacga
     1021 tggcaagccc cctaaaaagg ctattaaaaa ataccttgaa ttcagtggtt ttagcgagaa
     1081 agaatttcaa aaaatagtag attcttttac caataaaaaa atttttaaac gtgatgaaaa
     1141 tggcaaattt ttaagagatt atgatggttc tttggtaaga aaagacgagt gtgttttaaa
     1201 atgatagcgc tcattgatta caaggcggga aatttaaact ctgttgctaa ggcttttgaa
     1261 aaaataggag ctataaattt catagctaaa aatccaaaag atttgcaaaa agcagataaa
     1321 ttgcttttac ctggagtggg atcttttaaa gaagcgatga aaaatttaaa agaacttggt
     1381 tttatagaag ctttaaaaga gcaagtttta gtacaaaaaa aacctatttt aggcatttgt
     1441 ttaggaatgc aacttttttt agaaaggggc tatgaaggtg gagtttgcga aggacttggt
     1501 tttatagaag gtgaagtagt taaatttgaa gaggatttaa atttaaaaat cccacatatg
     1561 ggttggaatg agcttgaaat tttaaaacaa gttcctttgt atcaaggcat agataataag
     1621 agtgattttt attttgtgca ttctttttat gtgaaatgca aagatgagtt tgtaagtgct
     1681 aaagcacaat acggacataa atttgttgca tctttacaaa aagatcatat ttttgctaca
     1741 caatttcacc ctgaaaaaag tcaaaattta ggtttaaaac ttttagaaaa ttttgcaagg
     1801 ctttaaatgt taaaaactag aattatccct tgtgttttgt taaaaaacgg acaacttgtt
     1861 aaaagtatag aatttaaaga ttttcgcact atagggcatt taacttcaac aatgagaatt
     1921 tataatgcac gcaatgttga tgagcttatt atcttagata tagatgcttc aaaaagtgga
     1981 gaaatagatt ttgaaagtat agaagatctt gctaaagaat gttttatgcc tttaactata
     2041 ggtggcggga taaaaaccct tgaagatata caaaagattt taaatttagg tgcggataaa
     2101 atttctatca attctaaggc cttagaagat atggatttta taagtaaagc ggctaatcgt
     2161 tttggttctc aatgtatagt ttgttctata gatgttaaaa gaaaaggagg gcaattttgt
     2221 gtttatgaca ggggaaattt acttgaaaaa agtcctttag aacttgcttt agaatatgaa
     2281 aaaaaaggag ctggagagct tcttttaact tctgtggatt ttgaaggaag ggcaaagggt
     2341 tatgatttag aacttttaaa gatctttcaa aataaactta aaattcctct tattatcaat
     2401 ggaggactta gcaatccaag tgatggagtt gaggctttaa atttaggtgc tgatgcttta
     2461 gcgggtgctt atatttttca tttttctaag tataccccta aagatgtaaa agaagaatta
     2521 gctaggcaag gctttgcagt cagattgctt taggcaaata tggtaaaaat ctttatcttc
     2581 atcataaata gtaaaatgat tttgttgata taattttaaa gctttgcgat tgtctttgaa
     2641 aacataagct ttaagagtat ttacttttaa gttttcaaaa gcgtatttta taatttcatt
     2701 cattaaaatt tgtcctacgc cttttaaatt aggttttgcg taaagtccaa attcgcaaga
     2761 tttagttgtg atattgacaa aatcaattac gccgataatc tgctcatctt gaaaaactaa
     2821 aaaatatttt ttgctagaat cttgatgtaa tttttttaaa aatcttaaat gttctttaaa
     2881 atcaatatat tttgttttca taaattgatt gatatcgggg tgattgcgcc atttaaaaat
     2941 cagctctatt tcttgagaat taagttctgt gaaattttta agttttatca atacttatac
     3001 tccacttcat accctttttt agcaagccaa gttgctgtag attcttgatt tttaacataa
     3061 caaatagctt tgaaatttgc ctttaaaagc aaggcttcat tgactaaaga acttgcgctg
     3121 atgatgagtt tattgctttc attcatcaat tttgcaatat tttcatgatc gataaataat
     3181 ctaatattgt tatgtaattt tgcaaatttt tgcaattttt taagattagg attagaagag
     3241 ctggttgcaa tgctgatgat ttttgtttta ggtaattcgc tagcaatttg taaagaaagg
     3301 ttttttatat cagttccacc catgcaaatg aaaaaatcat attttttttc tctattttct
     3361 ttggcctctt gataaaattc ttccctgatt aaagcataag aaaaaccaca tcttacttcg
     3421 catttaaaag gcactaaacc ttcataatca cttgcttttg cataggcatt gacattgagt
     3481 aaaatatcac aatgatgagg ctttatttca tcatcaaagc ttagaatttt cacccctgtt
     3541 tcaagcttaa tcagtttttc atcatctacg ctgatgccat agtgatcaat gataagaagt
     3601 tcaaattttt cttctttgat gagattgata agctcgtaga tactttcgct actaagctca
     3661 taaacaggat aaggaatttc atcgatcaag gagccttcta aaggcaagca agcaaaactt
     3721 acatcgctat attgtttagc taagactaga tcgcgtttaa tgtgtccaaa gcctatttga
     3781 ctggagctat cgcttctaaa aagcactttc atgatttacc ttataaagta tttttgcaaa
     3841 ttccaaatct tgtatggtgt ctatatcgca aactaaattt cttggcaata caaacacgct
     3901 agaatgaggt ttaaatataa aatcttcctc aagccaagct ttgcttgtac caaaataaaa
     3961 agctcctgca tcatgataag cttttgttag atcttgtgaa cgacttttat aatgtttttc
     4021 atcaaacata taaacttgat tgttttcatt tagataaaat gccctttgta taggatactc
     4081 aaactcagta gcagcaaata aaaacttgct ttgattttgt ataaattttt cataggcttg
     4141 ttttaaaatg tctttattta acaaaggagc agtagcataa aggcagcaga catgatcata
     4201 aatttgattt tggctttgta aaatttctat ggcattttgc actacagcag tgcttgaagc
     4261 ataatcatcg cttaaatttt tatcacgcac aaaaggagct tttgcaccgt attttaaggc
     4321 tacttctatg atttcttcat catcgcttga aagcaccact tcatcaaaaa tacctgaatt
     4381 taaagcattt tctatgctat aagagattaa aggtttacct agaaaatcaa tgatattttt
     4441 tctaggaatt ctttttgatc caccacgagc agggattatg caaagatttt tcatagttaa
     4501 gccttgtttt tgtgttttat tttactaaaa tttaagtata attgtcttta aaatacaata
     4561 aaaggcttaa aattgcttat aaaccaaacc tttgaaattg attcttgtga tgatgtagaa
     4621 ctaggtatta aaagaaccag taagcttgaa tatcgcataa gttatgatga tgaaaaagat
     4681 atcaaagcca tagtttttat agtgggtggt tttggagcta atgcaaatat ttctttttta
     4741 gattttgata gggaatatat tgctaaaaat tttgatgttg tagtggtaca tgttttttat
     4801 cattgttttt gtgcaagaca aagtattgat caaaagtata atccaaagct tattcccaat
     4861 caagatgatt tagagcgtgt aaatggcatt ttaaaaaata ttaatttagg acatttatcg
     4921 gttaataaag ataattttga acaaattatt cctcttatag agcaaaaagt taataaaatg
     4981 aaacaagcag gtttggttga tgaaagccaa aaaatagaac tttcttgtga ttttatccca
     5041 cccaatggag attatcaaaa ctatggcatt atggcagcta ttgatcatat caatgcttta
     5101 aaagatttag ttaaacgctt tccaaaattt gcagatttac caaaaattta tggggggggg
     5161 tcttatggag gatacctatc tttactcata gcaaaaatag ctccttggta tgtggatggt
     5221 gtgattgata attcaggtgt ttgcttgcca tttttggcgt gcattttagg aagagaaatg
     5281 aatcaagggg aattttattt cgaaggaagt ggttatagac tttattgttt tgtatataaa
     5341 tactggaata gaaatatgaa ttcttcttat tattttggtg atgaaaatta tttaatcaga
     5401 gcagttttaa attcaaacca tcttcaaatt caatcaaatt taaataaaaa taccattttt
     5461 gtaagctatc atagtataca agatatgggt gcgccagtgc aaaataaaat agaactttat
     5521 aagtgttatc aggaattagg atatgatgca actttacatt taataaagga tgaaaatgat
     5581 atagatggta gatttgtaaa aagtttagag catggactta gaatgactga tagggcttta
     5641 tttagaaaag aacttccttt aatgcttgaa aaactacaag gaagaaaatc ttttatgcaa
     5701 gaaaattcta tctcttatcc ttgtgggaat aaagtatttg tgtttaagga tttagaagat
     5761 aaatttgagt tagagatgat aaattaaaat aaagataaag gatataaaat gacagcatat
     5821 ttacatatag gaactactaa tacaggaaat caagaaaaac aaggcttctt gatgcaaaac
     5881 gaagaaaagc ttttgcaaaa agcttatatt tacccaaaaa gtcttagagt ggcaaatagg
     5941 cattgggctt tggtggatat ggttttagaa ttggttcaaa aagaagatat tttaaaaaaa
     6001 gagagtgttt taagtcatat cacaaatgaa agacttctta gagctataga aaattttaaa
     6061 agtgaaagtg ctttacataa agataaaaaa tttatttttt cagctgaggg tatagtttgg
     6121 gatttttcta ccaaaaaaca tgtagaaatt ttagaaaaga ttatgagaga gttaggtttt
     6181 actcaaattt atattattgt gtattttaga gatactttgg gttatttaaa ctcacattgt
     6241 tctcaagacc ataaaaacaa tatggggtat tattctgctg attttgctcc gcaagatcat
     6301 cctagaaaat atatttttga ctatgaatgg atttgcaaaa ctcatgctga ggtatttgga
     6361 gaagaaaatt tgatagtaag acttctaagg gaggattatg taggagggac tttacttaag
     6421 gattttgttt atcatttagg acttgaatgg gatgagagtt ttgttttaaa acaaaccaaa
     6481 aatgaaagtt ttaatctttt aggaacggag cttatgtcaa gattaaatca aaaagattta
     6541 aagcaggata atcttaattc tttgcttttt atggcaagaa gaaaatttga aggcagcaaa
     6601 gaaaaaagat taaaatttgc agtgcaaaaa gatattgcta aagcttatgt ggattatttt
     6661 gcttcttcac ttgaatgggt aaaaaacaaa tatttcccgc ataaaaattc tctttttact
     6721 cctgtgaatt gggaagaata tgaacaaaat tatactttaa cccatatgct aagtaaagat
     6781 tgggatgatg tggcggattt tatagcacaa attattgttt ctaaaaatga aatcatcagt
     6841 tctttaaaag aacagcttga acttgcaagg aaagattagt ctttcattgc agtttcaagc
     6901 atttttttga tattttcaaa gctttcaaaa ttttcaggtg tgataaattc tgcttttaag
     6961 ggttttttat aaaatttttc tatttcggca accaaagcca tgatatcgat actatcgata
     7021 aaatcttcac ttactagatt ttccatactc tcattgatat ctgttctttc tatattgata
     7081 aaaaattgtt tgatttcttg cattttttct cctttagttt tttgaaatta taaaatattt
     7141 atttaaacaa gttcttttaa aacctttcta tcaattttac cattttgatt aagcttaaat
     7201 ttgtcgagtt taataaaatt ttttgggatc atataagaag gtaatttatc tttcaaaaaa
     7261 tctttaaaat taatttcttc ttcactttca taaaaacaaa taatatcttc tttaaaaata
     7321 caagcactgt ttttaatatt cacatgagaa tttatcacgc tttctatttc tccaagttct
     7381 attctatgtc ccatatattt tatctgatta tctgctcttc cgtagcataa aagctctcca
     7441 aattcattat aagaaacgat atctcctgtt ttatagagta aatctaaata attatcatgt
     7501 aaaggatttt gaataaaagc ttgtttggtt ttttctttgt cattataata ccctaaagac
     7561 aaagaagttc cacgcacgaa aagctcccct ttaacaccta tttgtttagg acttatgaaa
     7621 ttcatatttt catcaaaaac taaaagttct gtgtttttgc acgcttttcc tatcggtaaa
     7681 agttcttcat ctttaaaagt gcgattgatg atataaaaag aacatacatc agtgatttct
     7741 gttgggccat aaaggttggc aaataaggca ttgggtaagt gtttacgcca aatattgagc
     7801 tgtttattgg gcatgatttc accacaaaaa agcatctttt ttaaggcgtt taaactaaaa
     7861 ttattcaaag cttcagtatt tgcaaaataa atcagcaccg aaggtaccca aaatatagtg
     7921 cttacttttt ctttttcaag gcattctaaa attttatttg gaaaggcaaa aagatgatta
     7981 ggtaaaaggt gtaaagtcgc tcctgatttt acacttgaaa aaatatctaa aatgctattg
     8041 tcaaaataaa atggcgcttg attggctaaa atttcattct catcaaattt aaaagtctca
     8101 cacacccaaa aagtataatc aatcacactc ttatgagcta tgcttactcc tttaggaatg
     8161 cctgtgctcc cacttgtaaa gaaaacatag agtaaattag tatctatatg tttttctttg
     8221 gcatgcttta ttaaactctc atctatatta aaactttcaa agtcttgtgt ataaagcgta
     8281 ggtaaatcta agttaaaatt taagtccttt gaagtgataa aaagtttagg ctttaaaact
     8341 tctatgactt tttctactct ttctttagga cttttttcat ctaaaagtgt ataaaaattt
     8401 ccactgagtg ccactccaaa aaatgaaatc aaacaatcaa tccctttagg caagatgatt
     8461 aaaacaggag cttgagtagg attatcattt cctaaagttt ttaaaatttc actggctagt
     8521 tttttagaaa agagatcaaa gtctttgtaa gtgatttcct ttctttcttt gacaaagggt
     8581 tctacaaaag cagttttttc gctaaatttg attaaacttt tttctaaaaa atcatagata
     8641 tgagttgtca tgatttacct ttttaatttt ttgtaatata atatcgataa attaataaaa
     8701 aaggccttta tatgctcata aaccaaagct ttgaaatcga ttcttgtgat gatgtagaat
     8761 taaatataaa aagaactagc aaacttgaat accgtataag ttatgatgat gaaaaagaga
     8821 ttaaagctat agtttttata ataggaggtt atggagccaa tgcaaatata tattttttag
     8881 actcttatag aaattatatt gctaaaaatt ttgatgttgt agcagtgcat gttttttatc
     8941 attgtttttg tcaaaggcgt tcggatgttg aaaagtattc aacattagca gattttacaa
     9001 aagatgattt aaaattaata gaaaaagtgc ttcgtaaata caatattcca tgtgatcaat
     9061 tagccaataa tactgtagtt agtcattgtg aatatttgag cgagattatg acagaattaa
     9121 aaatgttaaa tcgattgcct tatgattttg aagaaagact aagtgcaact tttattcctt
     9181 cgcgtagaga atatcaaaat tttggcatta tggcagctat tgatcatatc aatgctttaa
     9241 aagatctagt taaacgcttt ccaaaacttg cagatttacc aaaaatttat gggggggggt
     9301 cttatggagg atacttagcc ttgctcatag caaaaatagc tccttggtat gtggatggcg
     9361 tgattgataa ttcgggttcg gctgttccac cgcttaatta tattattggt agagagttgg
     9421 aatttaaaag caaagatact aatggggata tgtatatgca gggcgatcat ttttttgtga
     9481 gttgttttct aaaaacccac tggacgcgta aagaaaattc accttatttt tttaataatg
     9541 aaaattattt tattagaaca ttgttaaata aggatcattt gattttgcaa agtcaaaaaa
     9601 ataaaaatat tatttatgtg agttatcata gtaaagaaga tcctttaact ccagcaaatt
     9661 ttaaagaact aaccatgcaa atattaaaaa ttttaggtta cgatgtaagc ttaaatttga
     9721 tagatgaaaa taaaattgat ggaaaattta ttaaaaattt agatcatggt tgtggtatac
     9781 ctgataaagc cttatttaga aaagaacttc ctttaatgct tgaaaaacta caaggaagaa
     9841 aatctttcat gcaagaaaat tccatctctt atccttgtgg aaataaagtg tttatattta
     9901 aagatgtggg tgacaaattt gaattagtga taaaagatta aaaccttaaa ggttttaatc
     9961 aagctttgct aaattgatta aatcacttac tttttgacaa tttttcaagt cttcggctgt
    10021 gatttttaaa gtaaaaagat ttttataaag caccatcaca gatacaaaag ccaaactatc
    10081 ccactcatct atatcatcaa gtagcatatc ttcatttaag tcttcatctc tatgcatagc
    10141 ttctttaagc tcttctaaaa attcagtttt tgtcattatt tctcctttgt gtaaattaaa
    10201 atattttttg tgtataaatc tttgaaattc aacaccgcac ttccccagct aagccctgca
    10261 ccaaaagcac ttaaactcgc tttaaattct tttggagtat ctagttcgca aagtagggta
    10321 ggtagtgaac aagcgcttaa attagcgtat ttttccatga taaaattagg aactttatca
    10381 tcattaagtt ttaattcttc tttgatgcaa tcaaccaaat acgcattgga ttgatgaaaa
    10441 agatgaaaag caatgtcttt ttcatctact ttagaaaatt ctaaaatttc tttaaagctt
    10501 ttaggttcgc attccaaagc catattgaaa atatttgctc cgtccatgta aaggttttct
    10561 aattgtctaa actcctcagt ttgcatgagc gaatcatcgt taaaaatatc tgctttaggt
    10621 attctcatcg caccttttgg aatgatgagt ttatcaaaat attttccatc gcttccaagc
    10681 tcaaaaaaag cttcgttaaa atccgttttt tcaattaaag ttgcacttac tccatcacca
    10741 aaaataggag ctaaattcat atttttaggg tggatgaatt tgcttaaagt atctccacaa
    10801 atgagtaaaa ttttacctaa gccactttgt attaaagaat gagcgacaaa taagccgtat
    10861 aaataccctg cacaagcttg ccctaaatca aaagctacag ttttggagct taaatttaaa
    10921 agttggtgta aataacaagc cgtagaaggc atgaaaaaat caggactttg agttactacg
    10981 atgagtgcat caaggctatt tttatctata tttaaacctt gtaaaagtgt attggctgcg
    11041 tgttttccaa gatcgcttac gcaagtgttt tcatcgcaaa tataacgcgt gtttaaacct
    11101 atgacttttt tcattctttt aagggttttg atatcgtttg aaaaaacgct ttctaactca
    11161 tcatcaatgc aaattttatg ttcaggtacg cttacgcaaa tgcctgaaat tttagcttta
    11221 tcaaatctag ttttcatgga ttataagtcc tttgaagttt aaattttgaa atggaataag
    11281 ggctgagttt ttttcaaatt ctttggaaat ttgttctaaa aagctcaaaa atggcatatt
    11341 tctttcgcct ttttgataat aaagccttgc attattgttt ttaagatcaa agaaatgtaa
    11401 agctagttca aaggctttaa aaaacattct agtttcaagt tttctaccta aagccctaca
    11461 agaaatgcaa agatcatcga taaataaatt tccttcttta caagaaaaaa caaaaatagc
    11521 gataatccca ctatcgctta atttatcact catactcaca cttacaatga gttctttttg
    11581 catgtgttgt gcgacttttt cttgatttaa gcgtgtgtaa ttagcgataa attgattggt
    11641 tttgcctaaa agttcgctaa tgcgagggat attttgcaga tcatttttgc taaaatttaa
    11701 gctgatttca agattttgaa aatattcttc atcgcttaag cttttaagct cttctcttaa
    11761 agcattggct gctatatctt tggcacgaat ttgatcttct ttggtatttg aaagttttaa
    11821 aagattagga aaaagtttga ttttataaag tatattttca tcgcataaaa gtgttttaac
    11881 gcctgtaatt ttggtatttt caagctcggc gatattatca tctataaaaa gcatagcgtt
    11941 agtatttata ttaaattttt tagcaatttt taagatattt tcaccttttg gctcccaatt
    12001 gatcattcta gcatcaaaat catcccattg taagatgaaa tctttcctta tttcaaaaag
    12061 tttttttgcg tctttttctt cattttttga agctagggca agtaaaaacc cttgtttttt
    12121 aaaagtttta attttttctt gtaaggtttt gtgcaaagga cttaaattaa gattatctat
    12181 accctcttca cctaaaattc cttgatacaa ggtattatca agatcaagta caagagcttt
    12241 aagagcgggt tttacgagtg cagggatgag gctaagtcct aaaatttgtg ctaaaaaaat
    12301 caaggcttta ttattaagct tagagcctgt aagttcttct ttagctaggt ctaaaatatc
    12361 ttcttcatca aaatactctt ttatgagttt ttctatgtta aaaatttcac aatttaaaat
    12421 ttttttatct gttttaaatt ctcctaaact aagaactaaa atagggtttt gtgaaatttt
    12481 tcttagttct aaaagtcttt cttctataaa attttgcaca ttatttttat agcgggttaa
    12541 atctagccat aaaagttcta aactagcttc tttaaagtta tcaaaactca agctatcatc
    12601 ataagagctg aaattaaact cagctcttaa attagcaaaa tgtaaaaaag gagcaatgat
    12661 actttgcact ccttcaaaag catgatttct atggatatta acaagaagat cttgactttt
    12721 actaaagtct aactctttgg caaattttat aagcccattg cgttttaaat gaggtgaaaa
    12781 aagattcatt atttttccaa aaccactgcc ataacaatgg cattttttgt ttttaatgct
    12841 ttttctaaag aataattatt tgccataaaa tattcgcatt ctttgatttt taaacctgca
    12901 tttttaagca aatctttaac ttcatcagga tgggaaaata aataaatatg gtcaatagca
    12961 ggagcgttga tagggatggt tgcaaaaatt tctccaccat cattcagtaa agtttttaca
    13021 tctttcataa actgtaaagg ttgttctacg tgctccaaga cttctcccat tacaactaaa
    13081 tctgctttat tgttgaaatt gcatttagtg aaatctttac atataaaatc acatttaaaa
    13141 ttattttgat taattgctcc aaattgattt tctaccatat ctttgctcat ttgacaactt
    13201 ataggagaaa tatctattcc ataatattct ataaattttt gacttcttag tgctttaaca
    13261 aaaaattctc catgaccagg accgatttca agataagtgc tttttcgatc ttgtttttta
    13321 tctatatatt tagcaaaata tcttctaact tcaatatgag cattccaaat aaaagaagat
    13381 atagcaagtc ccaccatgta ttgcttcata taattttcat tgaaatatac catatttttt
    13441 acttctgcta aagtgctata tctatatttt ccaaattcta taaaatattt agtttcttct
    13501 agagtgtcat tgagtacaac tatataactt ttagcttgtt cttctagatt gatgtttaat
    13561 gtatctttat aatagatgat aagtttttct aaatcattat attcttcatc tgaaagttgc
    13621 aatccatcta aacatttttt atgcaaagca tttttttctt ctatgagttt aaatagtttt
    13681 ttagtatttt ttaacataat ttctccttaa tagcttttaa aagttcattt tgagatttta
    13741 gctgacttaa ttcatctttg ctaaatttga tttcaaattc ttcttctaaa ctcatgatga
    13801 tatcaatatg agctaaagaa gtccagttct tgcagttttc catgcttaaa tttgtatttt
    13861 catctacttt ggtttcaagt atattttcta aaatttcata aaattgtttc attatcgatc
    13921 tttcttatat atggctaatt tatcattggt caaggcttga catattgctt gaacatattc
    13981 tctagtatta taaatttcta taaaattttt agcaaaattt atttttttat aattttgcgt
    14041 ttcttgaatt ataggattaa ttttattaat atcgcataaa taagactgtt gcaaatctct
    14101 aacgtagtag tcaatagtta ttgttttttc tttccttttt tcgtttatta aaataccttt
    14161 aaaattttta aaatatctac aaaaagttgt atttttttct tctgcgtaat gaactagagc
    14221 gtgcccttca tttaaaccaa aaattatata ttttccattc tctttggcta aaacttcata
    14281 aacacaattt tccccaaaac aacttgttgt atcttttaaa aataattctt cttttgctcc
    14341 ttttatagca aaagaaaata taggatcgtt tgtgcgtttt actcctgttt gtttgcgaaa
    14401 atattcattt aatgctccca tttttgtttt ggaatttatt ttgtcataaa cttcattttt
    14461 acaaaaacta taagtaaagg ttggcatgat caaagtgcct tcctgaccta taacttcaaa
    14521 aaaacaattg agtatagtct gtaaaaattc atttctagaa agcaaaggta tgccaaattt
    14581 aaaaagttct gtatgtacac ataaaatatc gcctcttttt atacctagtt gataaaaagc
    14641 atctattaaa tccttatcgg agtatttttt gtcattgtgt tctaaaaaat atttcatttt
    14701 actagtccat aaaattttat ttttttcaaa agttctttaa attcataagc ttgcatattt
    14761 aagatattgg ctatatcgat gatatcattc tctccatcac agtaagctag aaaattacaa
    14821 gctaaaggaa tgtcattggc agtgctaagg gtatgatata gtcctctttt gccaagattg
    14881 ggctcgcata ctatggtgtt tttatatacg gcgttgattt ctagatttaa aatcatttct
    14941 tgcatgcttt gaagtccacc cattaaacct ttttcagaga taaaattgag attatctttg
    15001 ctggtgtggt attgttcgta ttctaggtat cttgtgcgac atactcctac aatgccaaga
    15061 tttacaagcg gagcattgta ttgtctttca tcgcttccgc gatccaaaaa actaaaagct
    15121 ttgaaatttt ctttattttt aagcgtatgc aaggcaactt tatcgcttag agtgttttct
    15181 ttaggtgtat gtatgagtga gtaagcatga tcatcgccta agcaagaaag cacaaagcct
    15241 gctttaacat atttttttaa atgctctaaa tgtttgctaa gatagactat agaccctatg
    15301 gtttcaggga tgatgacaaa gcggtaatta tattttcttt cttttaaacc caaaagccat
    15361 tttgctagga aaatagccac cacagggcca ctaagctcgt tatttgccat ggaaggatga
    15421 caaagatagg ttgaaattaa aatttcatct tttgaatttt gcgtactagg taggataaaa
    15481 tcagcataat ccaaaacccc attttcatca tgttttgcat cgatataaac tttgtatttg
    15541 ccttttttaa gtttttttct ttcattatgc gtgagacaaa atccccaacg ccttttgtaa
    15601 taactcgtta cataaggaat agcatcgggc atttcttcta tggagtaaag atgatcttga
    15661 agttcttcta gttcgatttc tttatcgata gcttcgctat agtttagaag gtgtagatta
    15721 tgctttttaa aatcacaaat tttttctcct tctggagtga tgatataggc ttctttggcg
    15781 ttccattcat cagggactat ccagtcaaaa acctttgtac cactttttat agagtg
//
LOCUS       DAZAND010000032        15661 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.032, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000032 DAZAND010000000
VERSION     DAZAND010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15661
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.032"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..275)
                     /locus_tag="ACHDOB_000789"
     CDS             complement(<1..275)
                     /locus_tag="ACHDOB_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HFN3325720.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDT"
     gene            complement(372..2189)
                     /locus_tag="ACHDOB_000790"
     CDS             complement(372..2189)
                     /locus_tag="ACHDOB_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-hydroxymethylpterin diphosphokinase MptE-like
                     protein"
                     /protein_id="HFN3325721.1"
                     /translation="MTILEKNIQALLSGVNEPLGNKLLNFIQNKTCSRFNIDENLNIY
                     DKTHNVFMYENLEEELNFFYQSILEKTHRYPFICIYGIGNALLIKNLAKHYKHLFVFE
                     SEIELFILALSTIDLSEELKVYKVVLFDCVAKDLEIQIAMIFDQQSILEYLSLYEMFI
                     SSHYYLKYYETSILSLNELCIKSASVAIRNADIACFLPLLTHGQFLQNIPSMLESIPF
                     QRILSERKNKFENAIVVSAGPSLAKQLPLLKAYQDKAVIFCADGALSMLEKEDIVPDY
                     VTNLDYSDWPIKFFQNKENLKQSIIALECATHPNVVHSLKAENCMIVLRNKALYQRFN
                     LNDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSHSKGFSYGEQFSGE
                     KTVPTLKTQAYGGKGEVLTHIAWNDYRIKLEYLFACNEQKTKFYNATEGGARINFTEE
                     LSFKECCEKLLTKEKPKFDIPKSLTKNRSDKLLAKFKEKIQKDQENAKRFLDDALALK
                     QILENILSKDFLLPLEFLEKVYQNIENFNHSLDEDEFIQDEVLRGAFAYRGKMIADVL
                     KLHIKDKIHFITDYIKAYHEWLLYFIEKLEQKYKSLSKV"
     gene            complement(2199..3440)
                     /locus_tag="ACHDOB_000791"
     CDS             complement(2199..3440)
                     /locus_tag="ACHDOB_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HFN3325722.1"
                     /translation="MIVSKTYEIDSCDDVELGIKRESKLEFKLWYDDEKTPEALVFVV
                     QGMGDDISSIQYVGDYMVRQFNTAVVGVNYHCIGNRPQTGSTFYLDDIDKLILKVSCE
                     AADIKLPYDVDKIQDYKQMSEIFHFVNNQIIEGKQKGNFTPNYFLNLHVSLQPAKNEY
                     QNFGIMQAQDLLNVTLYLKKHAPFDTMGGGIPVIMIGSSHGGYLAHLAAKIAPWLVDG
                     VLDNSAYAKFLWRVVGFGKEIDFMQYSEFSTFDFFHHINTHCSTKTFWTSNSSSPCFF
                     SPARRKIRNLLEEDHLLEQSKCLKTCFVSYHSLYDEYVSLKEKTMLYKELEKLGFDAT
                     LHSITKESQVDGKFIKNLNHGMGIPVKLLIKKELPLMLEKIKQNLKKDYKEKCISYPC
                     EDLLYQFSEKDDKISLKIDKI"
     gene            complement(3440..3955)
                     /locus_tag="ACHDOB_000792"
     CDS             complement(3440..3955)
                     /locus_tag="ACHDOB_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HFN3325723.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGNFNGTKEVKFRVGDDKECLKLVF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFISSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(3956..4963)
                     /gene="tsaD"
                     /locus_tag="ACHDOB_000793"
     CDS             complement(3956..4963)
                     /gene="tsaD"
                     /locus_tag="ACHDOB_000793"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HFN3325724.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKMLKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDASLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKHSKELTYSFSGLKNAVRL
                     EILKHENLSDDIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNTNLKLAPLKFCSDNALMIARAAVDAYEKKEFVSIKEDILSPKNKNFSR
                     I"
     gene            complement(4960..6354)
                     /locus_tag="ACHDOB_000794"
     CDS             complement(4960..6354)
                     /locus_tag="ACHDOB_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M99 family carboxypeptidase catalytic
                     domain-containing protein"
                     /protein_id="HFN3325725.1"
                     /translation="MKFFLTILFFITSIFALELDFSIGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINRELEVKLFNDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHGKDESGILV
                     HKKNMQTQYSLDMAGKIYRAEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            complement(6356..7426)
                     /gene="dxr"
                     /locus_tag="ACHDOB_000795"
     CDS             complement(6356..7426)
                     /gene="dxr"
                     /locus_tag="ACHDOB_000795"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HFN3325726.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIPISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGGFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     RYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKAIDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            complement(7423..8148)
                     /locus_tag="ACHDOB_000796"
     CDS             complement(7423..8148)
                     /locus_tag="ACHDOB_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HFN3325727.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASIIGAILGVFVYNFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVALL"
     gene            complement(8157..8495)
                     /locus_tag="ACHDOB_000797"
     CDS             complement(8157..8495)
                     /locus_tag="ACHDOB_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325728.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDNEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            complement(8497..9804)
                     /locus_tag="ACHDOB_000798"
     CDS             complement(8497..9804)
                     /locus_tag="ACHDOB_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT RNA binding domain-containing protein"
                     /protein_id="HFN3325729.1"
                     /translation="MKYTELLQLQTFFSQFKKIDFIKRINDNILELSFDRKRFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDKKNLIIEALRHIDKSYRVVKPNVILEPLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFSPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDYKQEDLVANFYY
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            9866..10441
                     /locus_tag="ACHDOB_000799"
     CDS             9866..10441
                     /locus_tag="ACHDOB_000799"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HFN3325730.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVEKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHTHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSELK"
     gene            10438..11427
                     /locus_tag="ACHDOB_000800"
     CDS             10438..11427
                     /locus_tag="ACHDOB_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004620 - phospholipase activity [Evidence
                     IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HFN3325731.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSKATQTQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDFPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPESKKDDDNPAILHYMGIFDVNLAYLGDDYFINLMLRNNLK
                     FHDNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            11513..12481
                     /locus_tag="ACHDOB_000801"
     CDS             11513..12481
                     /locus_tag="ACHDOB_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3325732.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FAGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDVALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            12474..13412
                     /locus_tag="ACHDOB_000802"
     CDS             12474..13412
                     /locus_tag="ACHDOB_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HFN3325733.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDILILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVANITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            13409..14164
                     /locus_tag="ACHDOB_000803"
     CDS             13409..14164
                     /locus_tag="ACHDOB_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325734.1"
                     /translation="MIKLKNITKFYDNKAIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMKLKDYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNANDKIKINEALEYMGLSNLRNEFLDTLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQIDGKKICIYF"
     gene            14177..15169
                     /gene="ceuB"
                     /locus_tag="ACHDOB_000804"
     CDS             14177..15169
                     /gene="ceuB"
                     /locus_tag="ACHDOB_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HFN3325735.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATMKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVAGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVIDRNIIVGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            15325..15546
                     /locus_tag="ACHDOB_000805"
     CDS             15325..15546
                     /locus_tag="ACHDOB_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325736.1"
                     /translation="MNLEFSKETQHFLTNYCKDNNLSEKEVLELALSYLEHKIRIDGY
                     KKDIELYKQDKLKTLDFDETFNDIRKDLE"
BASE COUNT         5345 a         2492 c         2149 g         5675 t
ORIGIN      
        1 attgtatcta agattttaag ttgctcatcc atagccttat cagcagtttg taagatacct
       61 aaagcatcgt taccattaga tatagcttga cctaaagtat tagcttgaga tcttaaacta
      121 tctgctatcg ccatccctga agcatcatct gctgcggagt tgattctaag acctgaacta
      181 agtctgctta aagaagcatc taaactttta ctatttaaat cagcgtttgc ttttgcattt
      241 aaagctgcaa cattggtgtt aatacgaaat cccattttaa atccttttaa aaaatttcaa
      301 gctcatccat gaacttgtta aataccatat cgtgcaatca aaaaaatatt ttatacttta
      361 gtaataaaat ttcatacttt tgacaaagac ttgtattttt gctctagttt ttctataaaa
      421 taaagcaacc attcatggta agctttaata tagtctgtga taaaatgtat tttatctttg
      481 atatgaagtt ttaatacatc agcaatcatt tttccacgat aagcaaaagc gcctcttaaa
      541 acttcatcct gtataaactc atcttcatct aaagagtgat tgaaattttc tatattttga
      601 tagacttttt ctaaaaattc taaaggcaaa agaaaatctt tactgagtat attttctaaa
      661 atttgtttta aagctaaggc atcgtctaaa aatcttttgg cattttcttg atctttttgt
      721 attttttctt tgaatttagc taggagttta tcacttctat ttttagttaa actttttgga
      781 atatcaaatt tgggtttttc ttttgtaagg agtttttcac aacattcttt aaaggaaagt
      841 tcttcagtga aattaatcct tgctccacct tcggtagcat tataaaattt agtcttttgt
      901 tcattgcaag caaaaagata ttcaagtttt atacgataat cattccaagc aatatgggtt
      961 aaaacttctc ctttacctcc ataggcttga gtttttaaag taggcacagt tttttctccg
     1021 ctaaattgct cgccataact aaatcctttt gaatgagaat ttccttcttc atcaaaagct
     1081 aaatcttgtc ctatcatgat gatattttta aatcctaaag ctaaagctaa agtataagaa
     1141 aaatgactta catgagtacc tgtatctata taaccaaagt cattaagatt gaagcgttga
     1201 taaagggctt tgtttcttaa aacaatcata caattttcag cctttaaact atgcacgaca
     1261 ttaggatgcg tggcacattc aagagcgata atgctttgtt ttaaattttc tttattttga
     1321 aaaaatttta ttggccaatc actatagtct aaattggtaa cataatcagg cactatgtct
     1381 tctttctcaa gcatacttaa agctccatca gcacaaaata tcactgcttt atcttgataa
     1441 gctttaagta aaggaagttg tttagctaag cttggtcctg cagaaactac tatagcattt
     1501 tcgaatttgt tttttctttc acttaaaatt ctttgaaaag gaatgctctc aagcatagaa
     1561 gggatgtttt gtaaaaactg tccatgtgtt agcaaaggta aaaaacaagc aatatctgca
     1621 ttccttattg ctacacttgc acttttaata caaagttcat ttaaagataa aatagaagtt
     1681 tcatagtatt taagataata atgcgagcta ataaacattt catataaact tagatactct
     1741 aaaatacttt gctgatcaaa aatcatagca atttgaattt ctaaatcctt tgcaacacag
     1801 tcaaataaca caaccttata aactttcaac tcttcactca aatctatcgt gcttaaagct
     1861 agaataaaaa gttctatttc gctttcaaat acaaaaagat gtttatagtg tttagctaaa
     1921 tttttaatca gtaaagcatt gcctatacca taaatacata taaaaggata tctatgagtt
     1981 ttttctaaaa tactttgata gaaaaaattt aattcttctt ctaagttttc atacatgaaa
     2041 acattatgag ttttatcata gatatttaaa ttttcatcta tattaaaacg agaacaagtt
     2101 ttattttgta tgaaatttaa aagtttattt cctaagggtt catttacccc acttaataaa
     2161 gcttgtatgt ttttttctag tatggtcatt gggtttcctt aaattttatc tatttttagt
     2221 gatattttgt catctttttc gctaaattga tacaacaagt cctcacaagg ataagagata
     2281 catttttctt tataatcttt ttttagattt tgttttattt tttctagcat taaaggaagt
     2341 tctttcttaa tcaaaagttt taccggaatt cccatgccgt gatttaagtt tttaataaat
     2401 tttccatcaa cttgagattc tttagtaata gaatgcaaag ttgcatcaaa accaagtttc
     2461 tcaagctctt tataaagcat agttttttct tttaaagaaa catactcatc atataatgaa
     2521 tgataactta caaaacaagt tttcaaacat tttgattgtt ctaaaagatg atcttcctct
     2581 aaaagatttc gaatttttct tcttgcggga gaaaaaaaac aaggcgatga agaattactt
     2641 gtccaaaaag tttttgtcga acaatgtgta ttaatatgat gaaaaaaatc aaaagtagaa
     2701 aattcactat actgcataaa atctatctcc tttccaaaac ctacaactct ccataaaaac
     2761 ttagcgtatg cagaattatc caacactcca tctactaacc aaggtgcaat cttagctgcc
     2821 aaatgtgcta aatatccccc atgagaacta cctatcataa taactggtat accccccccc
     2881 atagtatcaa aaggagcatg ttttttaagg taaagtgtga catttaaaag atcttgagct
     2941 tgcatgattc caaaattttg atattcgttt tttgcaggtt gcaaactcac atgtaaattt
     3001 aaaaaataat ttggtgtaaa attacctttt tgcttgcctt caattatttg attatttaca
     3061 aaatgaaaaa tctcactcat ttgtttataa tcttgaattt tatcaacatc ataaggaagc
     3121 ttgatatccg cagcttcaca acttactttt aaaataagct tgtctatatc atctaaataa
     3181 aaagttgatc cagtttgagg acgattacca atacaatgat aatttactcc aactacagca
     3241 gtattaaatt gccttaccat ataatcacca acatattgga tcgatgatat atcatcgccc
     3301 ataccttgca ccacaaacac caaggcttca ggtgtttttt catcatcata ccaaagctta
     3361 aattcaagct ttgactctct ttttatacca agttctacat catcacaaga gtcaatctca
     3421 taagttttac tcactatcat tacattcccc ctattaaaag ataagtttta ctcgctaggt
     3481 ttttaaaatt ttcattctta cttaagatca cgcaagcttt gttactagaa gagcttataa
     3541 agtctatatt ttctaaatct tcatggcttt gattggctgc gttgatgata gcatttttac
     3601 ttgcttcatt gcttgaaatt cccatgagta taaaatcagc tttatttata aaaacaagtt
     3661 ttaagcattc tttatcatca cctacgcgaa attttacttc ttttgtacca ttaaaattgc
     3721 caagatcgac attttcaacc ccgcttacat tactcatcgt ttttatagag cttaaatgat
     3781 cattttttaa agtataaatg cttatatcat tgatcaaagt tttaaggtta tttaaagact
     3841 tactaacttc agcttcatcc ttgcttgaac tcatttttgg taaagcaata gcggctaaaa
     3901 ttcctaaaat aacaatcaca aaaacaagtt ctaatatggt aaaagctttt ttcatctata
     3961 tccttgaaaa atttttattt ttagggctta aaatatcttc ttttatactt acaaattcct
     4021 ttttttcata agcatcaacc gcagctcttg ctatcatcaa agcattatca gagcagaatt
     4081 ttaaaggagc tagttttaaa tttgtattat atttttgaca taaattttgc aaacgcgaac
     4141 gcaagttaag atttgcacta gctccaccta caacgccaaa atttttaaat ttataaagat
     4201 taaaaatttt ttctaattta tccatgatat gatcacaagc tgtattttca aaggcataag
     4261 ctatttctgc ttttatatca tcgcttaaat tttcatgctt taaaatttcc aaacgcactg
     4321 catttttaag ccctgaaaaa ctataagtga gttctttaga atgctttaaa ggtatattaa
     4381 aagagatatt tttaagtttg gcgttttttg ctaaattttc tatgatgacc ccaccaggat
     4441 aacctaaatt catcatttta gccactttat caaaactttc tccaaagcta tcatcatttg
     4501 tacttgctaa aagctctaag cttgcatcat ctttaagata aagcaccatg gtatgcccac
     4561 cactaacaag caaaattccc atatctaaag aaattttttc ttccaaaaaa agactataaa
     4621 tatgaccttt aagatgattt atagggatta agggtaaatt tagcgcactt gctaaggttt
     4681 ttgccataga aattccactg agcaaagaaa cactaagtcc aggttcattt gtcacagcta
     4741 tggcacaaag atttttaaaa tgctctttgc attgcttaag catctttggt aaagcctcgc
     4801 tatgaagtct tgcagcaagt tcaggtacca ctcccccata gatactatga tctaattctt
     4861 gggaaatttt tttatgaaat ttacattcta aggtgttttt atcaatgata gctatagaac
     4921 tatcatcaca agaactttct atagctagga taagattttt cattcaaatt ccactaaaat
     4981 agaacctaag aatttatctt ttgatcttgc cattttaaga gtatttaaat ccaaattttt
     5041 agcgtttttg atcaacttgc tattgatatt tgcctctaaa agttgttgca aatttgcacc
     5101 tcttaactca taaaattccg ctctataaat tttacctgcc atgtctaaag agtattgtgt
     5161 ttgcatattt tttttatgaa ctaaaatacc actttcatct tttccatgat caaagcctat
     5221 gatatttacg cgcacattag ctatctttgg aataagaaaa ttctctttta cttttacctt
     5281 ggttccaaaa ggaacggtgg tttcattgcc atcaacttga aaagttactt cattaaaagc
     5341 atcgctaaat tctaaatact caggatataa tcttgtttga aaacgattgc catattggat
     5401 ataaaaagaa tttccttctg cgataacagc cgtaagttca ttgcttgtgt tataatttaa
     5461 ctctttattt accggaaaag gcacatagtt gataaccttt cttggatttt ttaaagaaag
     5521 taaaattcta tcattaaaaa gcttcacttc aagctctcgg tttatggctt tatcaacccc
     5581 ttgtggagtg agttcaaaat ctctactaaa ttcaattcct gcggttttta gataattttc
     5641 aatcgccaaa agatgataat aagctcttaa atttacaggc agatttttac tcgcttcatt
     5701 tgcaaaagca gctttgtgat ttgaaatcac aaaataagtt aaagctttaa gcatttccgt
     5761 atcgccaagc tcttgagttt tggtgttttt aagatgataa gcatgctttg gatcagcaag
     5821 tgaagaattg acactattta cggtttgagt ggcgatattt tcaagatcag ggtatttact
     5881 tgcattgatt tcgcttgtat caatcacgct tgaatttccc caacgcttag gattttgcat
     5941 cgcatcgata taagtgggtt tataaaaacc ccaaccatcg tgaagattga tcaccatact
     6001 aacttcagga agtaaaataa gctctttaat gcgttgaacg gttttataat caggatcttt
     6061 tgggctaatg cttgcaaatt tacggtttaa atccccatta ttcccacgag aacgcttgat
     6121 aatgctatca aaagctaaat ttggagccac tataatctta cccttagtga tattataatc
     6181 actcaaaagc aaacttgccg catgaaatcc accaggctca tcgccttgaa ttccaccaaa
     6241 aattaaaact gtattattat catctagact ttttccattt tctcctatac taaagtctag
     6301 ctctaaagca aaaatgcttg ttataaaaaa taaaattgtt aaaaaaaatt tcattttaac
     6361 tccttaaata ctctcttgtt ttaaaatcat actcaaaaac ttcttctatg cttgaaattt
     6421 taggtactcc aaaatgatca atggctttaa aaatgcattt agcaatgtct aaaaatccac
     6481 ttttattttc taaaaaatta taaacaccaa cttcattagc agcattgatg ataacaccta
     6541 aatttggctc ttttaaaaat gtatttttaa gcttaaaaat aggatatttt tttgtgctga
     6601 ttggatgaaa ttttaaagca ggcattttgc taaaatcaac agcctctaaa ataggtgtat
     6661 cttgtttttc aaatatagca tctgaaatag ctagtttcat atctgctttt gaaaaatacg
     6721 ccgtactagc tccattttta aattcacaca ttgcatgcac taaagatctt ggttctatta
     6781 aagcatcaat ttctttaaaa tcatataaat gataagcctc tataatctca aaaagcttat
     6841 ttgccatagt cgcactatct atagtgatct ttgctcccat attccaatta ggatgtttta
     6901 aagcatcttt gacactaact tgatttaaat ctttgatttt atacctataa aaagctccac
     6961 cacttgctgt gatataaagt tttgctatat tttttttacc ttcgagtaaa aattttaaag
     7021 ccgcatgctc actatcaaca ggtaaaaatt tagccccttt taaaaaaccc ccagccacaa
     7081 caagactttc tttgttagct aaggctatgt ttttgccaag ttctttagcc tttaaagtgc
     7141 ttttaagtcc tgcaaaacct acaatggcat tgagcaaaag tttgtcttga cactctgtta
     7201 aaatttgctc taaaccttct tgtcctataa aaactctatc gtgtttaact aaatgcttat
     7261 tttttgaatc ttttatggca acaaatttgg gcttaaacct tgcgatttgt tcatttaaaa
     7321 gagcgatgtt atccccacaa gctaaagcag aaatgggaat gttttttaaa gcagcaagtt
     7381 taagagcatt tactcctata ctgcccgtac ttccaaaaag tatcataaaa gagcaaccat
     7441 cacaaaagca gcaatgatta ctgcatcgat tctatcgagc acgcccccat gaccagggat
     7501 aagatctcca ctatctttta cacctgcttc tcttttaaaa taactctcaa gcaaatctcc
     7561 aatcactgca aaaatcgcta caaaaaacga acaaagcaaa gaaagccaaa aattataaac
     7621 aaaaactccc aaaatagctc caataatact cgcacaaatc aagccaccta taacaccttc
     7681 taaggttttg tttggacttg ttggagaaaa aggagtttta cccataagtt ttccgataaa
     7741 atacgcccca ctatcacaag ctgcaacgat aatgataagc caaaaaagtg caaacatacc
     7801 ctgatctaaa tacacttgcc aaagtgctaa aataggcaaa ctaggataaa tataaataag
     7861 agctggtttt aaggaagcct ttttataaac caaatatcca acgactaata acaaagctaa
     7921 aatcccaaaa agcaaagctt tatgcgataa acttcccaaa ataaaagcta tagccaaagg
     7981 gataatagaa atattttcta aagcaaaaag tttttttgct tcactaaaag ataaatacaa
     8041 taaaaccgca aaaacgataa aattgataaa aaattgatca atcaacgcga taataataat
     8101 agcccctatc atcacaagag ctgaaataat tctagttgta ttaaacatat ttttccttat
     8161 atactaatat ctaggcgatg aatgctttgt gcgtctttaa aatttggatc tttagactca
     8221 tcttcttcat ttttctcatt atcgctggtt ttagcttctt gattgtgttt tttctttttt
     8281 tcttcttgtt cggctttttc tttgatctct tctttgattt catgagtctc attgactttt
     8341 tcaagcttgt ttaaagtttt ttctttttca ttaaattcag ccatatttag cgtagctgca
     8401 aaaccttctt ttgcaagctc attgcttgct tgtgtagctg gataagccat attctgattt
     8461 atataattga tatttcctaa agggctaact ggcattttaa tcctttgtga tattaatact
     8521 tttaaaattt gtataattta caaacgcctt ttgctgaacc ttaacaaaat tttttaaggt
     8581 ataatcgacc caatacgaac ctttctttaa cttagaaaag cttacacaaa gccttgcagc
     8641 aaattctatc acatcgaggc tgattttttg cttgtttgat acaatcaaag tatgtgcgct
     8701 aggaatatcc cttacatgaa gccacaaatc atctttttta gcatttttaa gtaaaaattc
     8761 attgcctttt tcatttttac ccacacaaat tttaaactca ttgtaataaa aatttgccac
     8821 aagatcttct tgtttataat cttgattttt tttgctattt tttttaggta gtaaaatttc
     8881 aagctctatc tcactcttag cttgaagcaa taattctttc aaactcaagg taaaatctaa
     8941 cttttctttt aaattttgcc tttgtatgtt taaattttta gctttttgtt ctaatttttt
     9001 ggcattttta taatataaat tagcactttg cttaggacta aattcaagct taaattcaag
     9061 ctctttgcct tcaaaatcat caagcttaaa ttccctttca taatctttta aaacactcaa
     9121 atttgcaaac aatacatcag ccctttttct gtattctaaa gcttttaaga gtaaagaatt
     9181 ttcttcatct agactagaaa aaagttcttg taaattttgt atttttttat ctacttgtgc
     9241 aagttttaaa ttttttattt gtttgatttt actctcataa atgcttgtaa atttgcgaga
     9301 aaaataatct gcaaagtctt tgatttcctc aaaattttca tccattttat aaggctttaa
     9361 aggctctaaa atcacattag gttttacaac acgataactt ttatcaatat gccttaaagc
     9421 ctctatgatc aaattttttt tatctgtaag aataacattg gtatttttac ccgtaaattc
     9481 aaaataaatc ttgctctcat agcttttata agccttatta gcttttacgc taaaacataa
     9541 aatacgattg ccttcaagga ctttaacttc ctttataaaa gcattgctaa aatacttttt
     9601 aagcataaaa tcaaaaggtg cattataatt ttttgcatta aatttagctg tataaatcgc
     9661 actcattgca cgagtaagat caaaaataaa tctttttcta tcaaagctta attccaaaat
     9721 attgtcattg atacgcttga taaaatcgat ttttttaaac tgagaaaaaa aagtttgcaa
     9781 ttgtaaaagt tctgtgtatt tcataaaaga aattataaaa tattttggcg aatttgtggt
     9841 agaattacat taaaaaagga aatttgtgca gcttaatgag ctaaattgcg tgattttatg
     9901 tggtggcaaa tctagtcgta tgggacaaga taaaagcaaa ttgattctta aaaatcaaaa
     9961 tttaactcaa tttcaagtag agaaattttc taaaattttt aaaaatgtct atgtgagtgc
    10021 gaaagaagac aaatttgaaa accattttag cttgataaaa gattctttag aatttgaagt
    10081 ttactctcct atgcttgcgc tttactctat actttcaaat tttaaaaatg aatttgtttt
    10141 tgttttaagt gtagatagtc ctaaagtagg tgaaaatgag cttttaaaaa tgcttccttt
    10201 tttagaacaa aactataaaa taatcatagc caaaacccct ttacatacac atcccttatg
    10261 tggcttttat cacagctctt tagctcaaac ttgtaaaaat ttcttagaaa aaaatgaaca
    10321 aaaaatagga cttttatttt ctgagattaa aaccaaattt gtagaatttg aagatgaaga
    10381 tgctttttta aatcttaatt tttatgaaga atatgaaaaa tttaaaagcg agttaaaatg
    10441 agaaaaattg ctttattttt aagcttatgc gtttttatat gggctagtga tttacaacaa
    10501 gctttagagt atgaaaaaca aggcgattat aaaaaagcta tggaaattta caaaaaactc
    10561 gctttaaaaa attcatctgt tttgatttct caagaacaaa ataactcaag caaagcaaca
    10621 caaacgcaaa attctatcac tataaaaaaa gaagaaaaac aagacttttc tcgcttagct
    10681 ttggctaatt atcttggtga aaatgaaagc tttaatcccc ttggcattag ctcttataag
    10741 atgaattatt ttttaccttt tgcttatagt tttaattctt taggagtaaa taataataag
    10801 agtgaggcga aattccaact tagtgttaaa aaaagacttt ttgaaaattt actagggcta
    10861 gatgaaaaat attatatagc ctatactcaa acttcttggt ggcaaattta tgagcattct
    10921 tctcctttta gagaaaccaa ctatcaacca gaatttttta tagattttcc tttgtatctt
    10981 aaagattatg aattttttaa caatctacgc gtaggtatat tgcatgaaag caatggcaag
    11041 ggagatgaga atttacaatc tcgctcatgg aatagaattt atgtatctac ggctatttta
    11101 tataataaat ttttatttgt tccacgcctt tggtatagaa ttcctgaaag caaaaaagat
    11161 gatgataatc ctgctatctt gcattatatg ggaatttttg atgtgaattt agcgtatttg
    11221 ggcgatgatt attttatcaa tcttatgcta agaaataatc ttaaattcca cgataacaaa
    11281 ggtgctatac aggttgatct aggatatgat atttttaata acggaattta ttggtattta
    11341 caatacttta atggctatgg agaaagcctt atagactata acaaacactt gcaaagactt
    11401 tccactggat ttttgatttc ttactaaaat atcctttgta gttttatcat ttcttaaaac
    11461 aaatttcatt acaatttcat ttttgataat tattattact ataaggaaag atttgttttt
    11521 taagcatata ttgagtttaa aagtgcttat agctttactt ttattttttg gaatgataag
    11581 tttatttata ggagttatca gtatcaatgt aaaagatatt cttaatctta actccactca
    11641 actagaaatc ataactctca caagaattcc tagacttata gcaattttac tcacaggaat
    11701 gagtcttagt atatgtgggc ttatcatgca acaactcacg caaaataaat tcgtttcccc
    11761 aactacagca gggaccatgg attgtgctaa atttggcata cttatttctt taatattttt
    11821 tgctggagcg tcttttttca ctcaagctat cattgcttct atatttgcac ttttgggttc
    11881 ttttatattt atccaaattt taagaaaaat caaactcaaa gatgtgattt ttgtaccttt
    11941 gataggcttg atgtttggag gtattattag tgctataacc actttttttg cctatgcttt
    12001 aaattatata caaaatatcc aaggttggct acaaggcagt atggcaaatg ttatgcaggg
    12061 aaattatgaa ttgctctaca tttctttacc actttttata cttgcttatt ttttagctca
    12121 taaaattacc atagttggca tgggcgaaga tgtagcttta aatcttggaa tttcttataa
    12181 tggtatatta tttttaggct tgatgattgt aagcattatc actagtttag tgattgtaag
    12241 cgttgggatt atcccttttt tagggctaat tatcccaaat ttagtagctc tttatctagg
    12301 tgataatctt agaaaaaatc ttatctatat agcactttgt ggagctttgt ttttacttgt
    12361 ttgcgatatc atttcaagac ttgtcatctt tccttttgaa atgcctttaa gtatcactac
    12421 aggtgtttta ggatctttaa tctttatctt tcttttgcta aaaaggaaag tttatgcgta
    12481 aaaaaatgct gattttgagc tttttaacac ttggtatgat agggattttt atacttgtgg
    12541 gtttaaatgg ctttgatgag tatgccttaa aaagtcgttt tttacaaatt gcagctatta
    12601 ttatagtagc tatttgcatc gctgtttcaa cagtgatttt tcaaacttta tgcaacaaca
    12661 aaattctaac ccctgctatc ataggattag attctttata tatgttactt caaagtgctc
    12721 ttatcttttc ttttggtgca gctaatttaa gtgtttataa aaacgatatc aattttttaa
    12781 tcactctagt ttgtatggtg gttttttcac taggacttta taaaatttta tttagtagcg
    12841 atagaagtat ttatcttata atgcttttag gcttagtttt tggaacactt tttagcactt
    12901 taagctcttt ttttgaagta ttaatcgatc ctgatgaatt catggtaata caaggaagaa
    12961 tgtttgctag ttttgataat attgcttttg atattttaat tcttgcttat atcattagct
    13021 ttttaagttt tatatggatt tttcgctata tgaaattttt agatccttta aatttaggca
    13081 aagatttagc gataaattta gggataaatt atcaaaaaat ttcaaaacaa ttgatgatta
    13141 tcatagctat tttaacttct attagcactg cacttgtagg tcctataacc tttttggggc
    13201 ttttggtggc aaatatcact tatgagctat ttaaaactgc aaagcatagt attttactaa
    13261 gcgcttgcat actcattagc attttagctt tacttggagg ggtatttttt gtctctagag
    13321 tttttgatta taatgccact ataagcgtag ttattaattt cttaggtggg atatatttta
    13381 tctatcttgt attaaagggt aataaattat gattaaacta aaaaatatca ccaaatttta
    13441 tgataataaa gccattattt cagatcttag ccttgatttt cataaaggca aaatcacttc
    13501 tataatagga gccaatggcg ctggaaaatc cactctttta gctctagcaa gtcgtttaat
    13561 aaaacctagt agtggagaaa tttatatcga tggaatgaaa ttaaaagact ataaagagca
    13621 aatcttagca caaaaaattt ccattctcaa acaacaaaac aatatcaatt taagattaaa
    13681 agttgaagaa ttagtcgctt ttgggcgttt tccacattct caaggaagac ttaatgcaaa
    13741 cgataaaatc aaaatcaatg aagctttaga atacatgggg cttagcaact taagaaatga
    13801 atttttagat acattaagcg gcggacaaaa acaaagagct tttatagcca tgatcatcgc
    13861 tcaagatact gaatttataa tgtttgatga acctttaaac aatcttgata tgaagcatag
    13921 tgtacaaatc atgcaactaa tgaaaaattt agtcaaagac tttaacaaaa gtatagctgt
    13981 tgtattacat gatattaatt ttgcttcgat ttattctgat gaaatcatag ccttaaaaga
    14041 tgggaagctt ttaaaacaag gctcaaaaga tgaaatcatc aatcaagaaa atttaaaaca
    14101 aatttatgat atggatatac ctgtaagtca aattgatggt aagaaaattt gtatttattt
    14161 ttaaaaagga gaaaatatga aaaaatcttt agtttttgca ttttttgcat tttttttaag
    14221 tctaatctta acagcttgta attcaaattc aaatgaaaac aacgcaagtt ctacaacaaa
    14281 aaccaacact gctacgatga aagttttgcc tattagcatg agtgatgagg gtgatagttt
    14341 tttagtgaag gatagcctag gagaaaataa aatccctaaa aatccttcta aggtagtgat
    14401 cttagatctt ggaattttag atacttttga tgctttaaaa ttaaacgata aagtcgcggg
    14461 cgttcctgct aaaaatttac caaaatacct acaacaattt aaaaacaaac ctagtgtagg
    14521 tggagtacaa caagttgatt ttgaagccat taatgcttta aaacctgatc ttatcatcat
    14581 ttctggacgc caaagtaaat tttatgacaa attaaaagaa atagctccaa ctttatttgt
    14641 aggtcttgat aatgcaaatt ttttaagctc ttttgaaaac aatgtcttaa gcgttgcaaa
    14701 actttatggt ttagaaaaag aagctttgga aaaaatttca gatattaaaa atgaaattga
    14761 aaaagccaaa agcatagttg atgaagataa aaaagctctt attattctta caaattctaa
    14821 caaaatttca gcctttggcc ctcaatctcg ctttgggatt attcacgacg ttttagggat
    14881 taacgcggta gatgagaata taaaagtagg cactcacggt aaaagtatca attctgaatt
    14941 tatattagaa aaaaatcctg attatatttt tgttattgat agaaatatca ttgtaggcaa
    15001 caaagaacgg gctcaaggca tactcgataa tgcgcttgtc gctaaaacca aagcagcaca
    15061 aaacaaaaaa atcatctatc ttgatccaga atactggtat ttagcaagtg gaaatggact
    15121 agagtcttta aaaactatga ttttagaaat caaaaacgct gtaaaataat ataacttcgc
    15181 aagggctagt ctcttgcttt aatacttaat aaaatatttg ggattttcaa gaaagtttta
    15241 gtggcgaaca gagagggatt tgaacccttt ttttaaataa aaaatgtttt tatgttataa
    15301 taaatcttta aaaaggagta acaaatgaac ttagaatttt caaaagaaac tcaacatttt
    15361 ttaaccaatt attgtaaaga taacaattta agtgaaaaag aagttttaga acttgcttta
    15421 agttatttag aacataaaat aagaattgat ggttataaaa aggatataga actttacaag
    15481 caagataaat taaagacttt agattttgat gaaactttta atgatattag aaaagattta
    15541 gaataaatga aaattgttcc aactcctaaa tttaaaaatg agcttaggca tattgttaat
    15601 tttataaaat tagatagttc tttttatgct aaagaatttc ttaatgatat taattcaatt
    15661 t
//
LOCUS       DAZAND010000033        15373 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.033, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000033 DAZAND010000000
VERSION     DAZAND010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15373
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.033"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(114..1001)
                     /locus_tag="ACHDOB_000806"
     CDS             complement(114..1001)
                     /locus_tag="ACHDOB_000806"
                     /inference="COORDINATES: protein motif:HMM:NF021628.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu-like prophage major head subunit gpT family
                     protein"
                     /protein_id="HFN3325737.1"
                     /translation="MAFTELSTAYMQAVNKGFSTIFNNALEGGNKDYEKFAMVTNANS
                     LVVEYQFLASLPKMREWIGDRQFSKLKGQGYTITKKDWESSIEVPRDVITYDNLGIIR
                     PQIEMLAYEVQNHYNDLIFTLLEQNQTCFDGKAFFANDHDIGGVSFSNLGDKKLSAAS
                     LMEARKNMRALTNESGRTLNINPALLVVPLSLEAKALEIVNSDLINGSSNVFKGVVEV
                     FTSPNLSDQDAWYLIDNTKPIKPLILQINKGAEFVAKDNPTDEAAFMRKTFQYGIDSE
                     DNAGYGLWQLAYKSSGKAE"
     gene            complement(1001..2041)
                     /locus_tag="ACHDOB_000807"
     CDS             complement(1001..2041)
                     /locus_tag="ACHDOB_000807"
                     /inference="COORDINATES: protein motif:HMM:NF021627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HFN3325738.1"
                     /translation="MRDLLLELNTKLTNEKVKISPIGIAKGLDGRVFKIDGEKLINNI
                     QKNGLDIALNLNHQGGEAYGWFDRNSLELREDGIYASLELTPKGKELVENKAFRYLSP
                     EYYVDDDKNVIHLDAMGLVNQPNLLNRALNKARSLINSTKNSKLSTPRSGTEAKKGKV
                     EHGLQVGAGSETPTRKDDFSSSAKLKKERNTMNEEELEELQKLAEQVEEQAENVEESV
                     QETEDCVGEGENPDSELETLRQENEELKAQIAELKAKLETALNKNEETEIELNKKRLD
                     SLLQNGLILPNRYQKALNMKGRVLEDYLDVCKKEANIVLGKKELNFTNKRKELNAYEA
                     KVFKQLGIKGGK"
     gene            2172..2636
                     /locus_tag="ACHDOB_000808"
     CDS             2172..2636
                     /locus_tag="ACHDOB_000808"
                     /inference="COORDINATES: protein motif:HMM:NF020401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HFN3325739.1"
                     /translation="MSKKELAKSLFIQGKSIKDICVLTGLSRQGIYCMKKDDFSKGID
                     WESLKLAALRDEKDLENKEAMFLNALIGEFERFLESASKNELDIDTLEALNKYAKTYW
                     TIKAPQKVDVKALNLQTCKKTIDSIIELASTNEIVCEWLSDNSDLIISKVLK"
     gene            2633..3265
                     /locus_tag="ACHDOB_000809"
     CDS             2633..3265
                     /locus_tag="ACHDOB_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HFN3325740.1"
                     /translation="MNELGIICDIKEGKAKVAIGDMVTDFLSVFQSLANSYAVSFSPL
                     RIGEQVLVIPVRGDLNSGVILRGLYQEKHRAKNTDENTFNIDFEDGTHLEYNSKSSTL
                     KLDVVKNINITCVDKTTHNQNNTLNTKNHTTNANTITLNAPSINLNGNTQIAGAISTS
                     GEGGASGTFSIKGNLNLIGNLQVSGNISDSKGDLTNHTHSCTCGATASPR"
     gene            3462..3752
                     /locus_tag="ACHDOB_000810"
     CDS             3462..3752
                     /locus_tag="ACHDOB_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HFN3325741.1"
                     /translation="MNYMVSIEESIKDILITPLGSRVMRPEYGSLLYTLIDRKIDDDF
                     KIKLTRYTAEAISKWEKRVKLKGVRLNECKDNKLSITLLFENYGDLTMELGK"
     gene            3749..4915
                     /locus_tag="ACHDOB_000811"
     CDS             3749..4915
                     /locus_tag="ACHDOB_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009650649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HFN3325742.1"
                     /translation="MSELLSANDSYFKQSFLKDIPYPQIIEELDYEKLLKAYEELFKS
                     FLKDNVELLESDPFKAILEALAYREMIIRARINESIKATYLHYAKGSDLDNVVANGYL
                     IQRLKGVKPTAKVEFELNTLLTYDVIIPKGAIFSNEKADLATLKEEVVIKKGQSKAQG
                     ILELDEFIQSKESKTEFLQTPLPFVTKIKQLEYFSGGASEESDEALRERAVMSVHRFS
                     TAGSEKGYIYHALSASAKVASIKALNNGAGKVRVIIKSEDELSVDVVKEYLSADERRP
                     LTDEVSVELAKKREFIVDAKLLLLELSRANEISEKINALQSDFDLSVDLALGFIYKCL
                     HQDGVYKSEILSIKEKIINEEEQELKDLPLENIIIADDEFATLSFSLSYEKAVL"
     gene            5013..5633
                     /locus_tag="ACHDOB_000812"
     CDS             5013..5633
                     /locus_tag="ACHDOB_000812"
                     /inference="COORDINATES: protein motif:HMM:NF021220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016032 - viral process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HFN3325743.1"
                     /translation="MNTLILNHHPKQSKAIDLSAKTRFEDLNLASITNLALNCDERLL
                     PILANAYDVSIDGLSQKESRKLISKALLLDRYNGTTWAIKEALRAVFPTAVVKEWFNY
                     GGKPYFFKVKVSTTNVSFDERTLNTLERLIYDFKNVRSVLEAIEIEIESKNDSFNANA
                     QISGETIEILPFQTTQIENNQKPSLNAMGVFMCEIIRTNIDFKGVY"
     gene            5633..6664
                     /locus_tag="ACHDOB_000813"
     CDS             5633..6664
                     /locus_tag="ACHDOB_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HFN3325744.1"
                     /translation="MAKSEYYTILTKIGIAKFIAARASGNGINLKSFKLSSKVILPSE
                     EMQSLEEIVYEANISSKSVDESNPNYVNLMCHVPSNVGGFEVNAVGIYDEAGDLLAVG
                     NVPRTYKPILKEGSAKELMIKIVMELSNAEEVILKLDPSVIMASRDYVDAIKVELNLK
                     IDALMQKYDAEFKKVWDEFAKYLLENKFNTEIAKYVTLATNQTITGAKDFTKLPTSSI
                     KATNDNQFVNLATLKEQAPSLMGGLGVNQAWQNVSRAFDVTYTNNTGKPIAAKFQVNA
                     SASGGVSFSCSEQFVVSMFQTSLSNGGVSRTYFGFGIIPPNGQYRLNTPEHSGFYPSK
                     SIVSFMELR"
     gene            6689..7195
                     /locus_tag="ACHDOB_000814"
     CDS             6689..7195
                     /locus_tag="ACHDOB_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HFN3325745.1"
                     /translation="MKYFIDKNDNNQIYAYEDEVSDEQIKTGLTPISEEEFNSLINPP
                     KSEEELLNEAKELKINEINTKKENILNGGFSFKGKIYQSSNEDQLRINGAVTNALVNP
                     NLIPYIDWIALDNSTTRFSVDEFKLFASSMAYFVQETIFKASALKEKARNAQSKEELD
                     LIVWESEK"
     gene            7192..7563
                     /locus_tag="ACHDOB_000815"
     CDS             7192..7563
                     /locus_tag="ACHDOB_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HFN3325746.1"
                     /translation="MTKTELKRVCVKPYDKDRFEVISDYAFSLPNYKGIVPQGFKTDG
                     ASIPRLFWSLFPPFKSEYFSACVVHDFLCEKANSRTDYRTADLALKEAMTLLGCSKFK
                     IFVFYHSCNLYHAIKCLIKGK"
     gene            7664..8671
                     /locus_tag="ACHDOB_000816"
     CDS             7664..8671
                     /locus_tag="ACHDOB_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325747.1"
                     /translation="MKDYGISFIPDINQGSKEPSEPIVSDKLNAQKVNELIDKKLKLF
                     KEELINKEELKSLIEEILQDQNFQNTNIKISKTPPNYNTQAKVGEIWAVVESKKQLFI
                     CTANDNDFTSWVDLLGDGSNDIAPKEKIIITFDNTTTGGQYGGCMSDLRLGFENGFAT
                     PNKVQDEYENAKFTMTKDGNGLNRSDFTIDSNPTPTDNQIVGTIKTSGIYQETYHKIA
                     HVFKKYNGGADECCLWSSSGSREVSIELENTPMPNKLFARGNGYYGQTEITNVRVKKS
                     IFIGEQEIQSEDFNVEKLEASSDTYGDYAFLFEISKQDQIVMKKELNLNPKKTKKYKK
                     M"
     gene            8690..9880
                     /locus_tag="ACHDOB_000817"
     CDS             8690..9880
                     /locus_tag="ACHDOB_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HFN3325748.1"
                     /translation="MAANYGVNFNISNGAASPIKVQSDTPIGIAGAIKGASKEMIYTK
                     AGYESADSFPIFAFSNVSKAKEFVNDLIKENNIQDFRLLDTLECINLQNVSNVIIISF
                     FEESEESENTLTHIVDAIEAFKKAKHKTGFSPDLIIAPYYSHEAGVKAKLESVASSMN
                     ITAIVDLYATNVGEAINTMEAFSSKRLIATWPQVQILNTQGKYAYVPQSPIIAGLIAH
                     TDGDKEYGFSDSYSNRVMNGVTGTEHFIEFINGFDCDAERLRNAHISTCILGEGYRSW
                     GGETSHEDTIWQDLARVRTFDRIALAGQKAAFKAIDKKASELYFIKISIEELLRDLKG
                     AKVLIGYEVSWDEERNTDANVSAGKFYLNIKMMNNPIVKQITLEFIYSDEWASDLIKT
                     ISAE"
     gene            10003..10518
                     /locus_tag="ACHDOB_000818"
     CDS             10003..10518
                     /locus_tag="ACHDOB_000818"
                     /inference="COORDINATES: protein motif:HMM:NF016846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HFN3325749.1"
                     /translation="MFNKVPQVIEQANCFIDGYGYAGVARDITLPIIEQEVLESKGAL
                     SANYGTGVFKAMECSFKISEMGEQAFEAFGVNTFSKTKIPLVFKASIHQSGSGKQVPF
                     VVELNGEFTSMTPPSIVAGGEFTSEIKINVHFIKITMDGKRLFLADIKNLILEFNGID
                     KMAKVKANLSL"
     gene            10529..10765
                     /locus_tag="ACHDOB_000819"
     CDS             10529..10765
                     /locus_tag="ACHDOB_000819"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HFN3325750.1"
                     /translation="MSKIIKLSNGNEVKFNPPTAGMLRRSMDMQKGEGSRAFYMIGEC
                     TNMSLEELDNLSLEDITLLSNELNNYQTPSGSTE"
     gene            10749..10886
                     /locus_tag="ACHDOB_000820"
     CDS             10749..10886
                     /locus_tag="ACHDOB_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325751.1"
                     /translation="MGALNNEAIALIAHYLHFSYSEIMSLNIKDYLEFLDISLKIAKS
                     V"
     gene            complement(10873..11103)
                     /locus_tag="ACHDOB_000821"
     CDS             complement(10873..11103)
                     /locus_tag="ACHDOB_000821"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325752.1"
                     /translation="MKKIDNAFNAKIIFLKNFKIVFKAFLTLGIFVAFMLSFLSDDYL
                     AGFVNITSFFVLFSLILYIATFIYCFFKLKHS"
     gene            11133..13097
                     /locus_tag="ACHDOB_000822"
     CDS             11133..13097
                     /locus_tag="ACHDOB_000822"
                     /inference="COORDINATES: protein motif:HMM:TIGR01760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016032 - viral process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HFN3325753.1"
                     /translation="MQDLGLSFGISLAFKGFKEFAKNTEALKKFSANLDQSNKSVKAL
                     NKSIDALEKSKAKIKAIGEEFSALKGELMAKGASALAIGVPVKISANLEDDMNNINAF
                     LNTNNESLNLLRKNFLKLSSNIGMNVNELTKLGEAGARLGIKSESELLKFSELGAKYS
                     KVFKLNNEESINFMSKLSNIYKLNTKDMQNLGDKIIGVAKASNVSASSVAKIMNEVGG
                     DAKLIGMSAEGAAALSAAFASATKDEGEAIGTFKAMTSVMSNLNNASDDMKTKFLSLG
                     LSTEQLSAYFKQDASGAVKVLLNQIKTLPKDEMTDFLNSVFGTGAAGMMQNLVDNTDK
                     YEQALKSLKNTKMGALNNEFKKLGDSTNTSFAKLSASMANLSASIGEALAPALSFVMD
                     SISSLINFIREIIDAFPNLSKVIGTLVVSLTIASVALSALKVGFLVAKIAGAQFAFTL
                     NAIRTAFNILKIAFLTNPIGLVLMSIAAIATLVIMNWDKVKTFFIGFIDKISSVFSGF
                     GEFFSSLWGGLFNWFASKFEWLSKAFAKIKDIAKSVASFFGFSDNDKKVDGEKYQNLQ
                     NDNSRTHHGIVRSGAPKHEARQAEIAALSKRSDISKKNEINVNINGTFNISSNNGVFD
                     LKAFAKEVENSVLSALNKNADKKVQTTIWG"
     gene            13099..13473
                     /locus_tag="ACHDOB_000823"
     CDS             13099..13473
                     /locus_tag="ACHDOB_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HFN3325754.1"
                     /translation="MIFCLGEFEFEALNVDELEKNYEYGIRSIERINNHNALISVAKA
                     NESIKISGKTLPLSKDKNTYLDTLKQMASQNKSYAMCSASGVYFGKFAILSISEKQSA
                     FLEGSGFLTQNFELNLQRDFDE"
     gene            13466..13657
                     /locus_tag="ACHDOB_000824"
     CDS             13466..13657
                     /locus_tag="ACHDOB_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HFN3325755.1"
                     /translation="MSEIYIAKNNERLDSVVYRHYGTLLYFDQVLLANPKLEPLLKTG
                     DKVILPNIEIQENKEETLW"
     gene            13651..14619
                     /locus_tag="ACHDOB_000825"
     CDS             13651..14619
                     /locus_tag="ACHDOB_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HFN3325756.1"
                     /translation="MVNHPSFKIKANDKDITQKISLNLINLSFDDKAKDESDEISISL
                     NGLYARAPFGDKLELWLGFDEKLFKCGTFSINSFSKNYSSKTTDIKATAINFASNIKN
                     KKSRTWENTNLADIALKIAGENNLKAKTNNANKAYIKHELQNNVSDIEFIYTLCAKYG
                     FLACIKEQTLIIIEQKEAAQEGVKGGGKQEGGIKYTLDISELSDLNISIKNRNDYTGV
                     KLTYQDIEQGIVKSVLSGNDKGCVYELKVAGVKNDSEALNLANAKLNALNKGSFEGSF
                     SMIGKNIKAGANLEIKGIDEKVIFSIKDVKHDFSLSGYTISVNFEG"
     gene            14721..>15373
                     /locus_tag="ACHDOB_000826"
     CDS             14721..>15373
                     /locus_tag="ACHDOB_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HFN3325757.1"
                     /translation="MKNNTDKFLKTSTLTKPTRTTLKAPFAWVGGKNYLAKEIIALMP
                     EHKSYIEVFGGALSVFYQKSASKIEVINDINDELINLHLCIRNKPQSLANVLNSMIIS
                     RKIFHMLKNKEIKPKNDLERAAFYFYLINTSFGSSMGQFAMSKQRAPKRLYRDFSLHA
                     KRLKNASIENKSFEYILKEYDYNEALFYLDPPYVGTENYYKNTGGFGLKEHELLCNLL
                     "
BASE COUNT         5611 a         2078 c         2800 g         4884 t
ORIGIN      
        1 tttttcaaac tcttgctttt cctttaaaaa caaagctttt tgatcgtcat tttcttttgg
       61 atttaaaatt gcattttgat ttctaagttt attagctgaa actatattgt ccattattct
      121 gcctttccgc ttgatttata agctaattgc cacagtccat aacctgcatt gtcttcgcta
      181 tcgattccat attggaaagt cttacgcata aaagcagctt catcagtagg attatcttta
      241 gcaacaaact cagctccttt gttgatttgc aaaattaaag gtttgattgg tttggtattg
      301 tcaattaaat accaagcgtc ttgatcactt aaatttggac ttgtaaatac ttctacaacg
      361 cctttaaaaa cattgcttga accattgatt aaatcgctat ttacaatctc gagtgctttt
      421 gcttccaagc ttaatggtac aaccaaaaga gcaggattga tatttaaagt gcgtccgctt
      481 tcattagtca gtgcacgcat gttttttcta gcctccataa gacttgcagc acttaatttt
      541 ttatctccaa gatttgaaaa actcacacca ccaatatcgt gatcatttgc aaaaaatgct
      601 tttccatcaa agcaagtttg attttgctct aaaagtgtaa aaataagatc attataatga
      661 ttttgtactt cgtaagctaa catttcaatt tgtggtctta ttattcctaa attatcgtaa
      721 gttattacat ctcgtggtac ttcaatggaa ctttcccaat cttttttagt gatagtataa
      781 ccttgaccct taagtttgct aaattgacga tcgcctatcc attcacgcat ttttggtaaa
      841 gatgctaaaa attgatattc tacaaccaaa gaatttgcat tggttaccat tgcaaatttt
      901 tcataatctt tatttccacc ttcaagagca ttattaaaaa tggttgaaaa tcccttattc
      961 actgcttgca tgtaagcagt gcttaattct gtaaaagcca ttatttgcct cctttgattc
     1021 caagttgttt aaaaactttt gcctcataag cattaagttc ttttcttttg tttgtaaaat
     1081 taagttcttt tttacctaaa acaatatttg cttctttttt gcaaacatca agataatctt
     1141 ctaaaaccct gcctttcata ttaagagctt tttgatagcg atttggtaaa atgagtccat
     1201 tttgcaaaag agaatcaagg cgttttttat taagctcaat ctctgtttct tcatttttgt
     1261 ttaaagcagt ttcaagtttt gctttaagtt ctgcaatttg tgcttttaac tcttcatttt
     1321 cttgtcttaa agtttctaac tcgctgtctg gattttcacc ttcacctaca caatcttctg
     1381 tctcttgtac ggattcttct acattttcag cttgttcttc tacttgctcg gctaattttt
     1441 gtaattcttc taattcttct tcgttcattg tattcctttc tttttttaat ttcgcggatg
     1501 aactaaagtc atccttgcga gtgggagttt cactccctgc acccacctga agaccatgct
     1561 cgaccttgcc ttttttagct tctgtcccac ttcgtggggt gcttaacttt gaatttttgg
     1621 tgctattgat taatgaccta gctttattta aagccctgtt taaaagattg ggctgattta
     1681 caagtcccat ggcgtctaaa tgaataacat ttttatcatc atccacataa tattcagggc
     1741 ttaaatatct aaaagcctta ttttcaacaa gttctttccc tttgggcgtt aactcaagac
     1801 ttgcataaat gccatcttct cttaactcta atgaatttct atcaaaccag ccataagctt
     1861 ctcctccttg atgattaaga tttaacgcta tatcaagtcc atttttttgt atattattga
     1921 ttaatttttc cccatctatc ttaaatactc tcccatcaag tcctttggct attccaatag
     1981 gagaaatttt tactttttca tttgtgagtt ttgtattaag ctctaataat aaatcacgca
     2041 tcaaaagcct ttattttttc gcataatcat aagataaaaa atgcttttaa accacctatt
     2101 taaagtatat atagactgat tttaaaaaaa taaaaaaata taatttcaag caataattct
     2161 aaaggaaaaa tatgagcaaa aaagaacttg ctaaaagtct ttttatacaa ggaaaaagta
     2221 tcaaagatat atgtgtttta acaggtctta gcagacaggg tatatactgt atgaaaaaag
     2281 atgattttag caagggtatt gattgggaga gtttaaaatt agccgcttta agagatgaaa
     2341 aagatttaga aaataaagaa gctatgtttt taaacgcatt gattggtgag tttgagaggt
     2401 ttttagaaag cgctagtaaa aatgagcttg atattgatac tttagaagct ttaaataaat
     2461 acgctaaaac ttattggact attaaagctc cacaaaaagt agatgttaag gctttaaatt
     2521 tacaaacttg taaaaaaact attgattcta ttattgagtt agcaagcacc aatgaaatag
     2581 tttgtgaatg gcttagtgat aatagtgatt taattatttc aaaggtttta aaatgaacga
     2641 acttggtatc atttgcgaca ttaaagaagg taaagctaag gttgctattg gagatatggt
     2701 aacggatttt ttaagtgttt ttcaaagtct agctaattct tatgcagtga gcttttctcc
     2761 tttaagaata ggagagcaag tattagtcat acctgtgcgt ggggatttaa atagtggagt
     2821 tattttgcgt gggctttacc aagaaaaaca tagagcaaaa aacacagatg aaaatacttt
     2881 taatatagat tttgaagatg gaacgcattt agaatacaac tctaagagta gcactttaaa
     2941 acttgatgtg gttaaaaata taaatatcac ttgtgtagat aaaaccaccc ataaccaaaa
     3001 caacacctta aatactaaaa atcatactac aaacgctaat accataacgc ttaacgctcc
     3061 aagtattaat ttaaatggta atactcaaat tgcaggagca atttctacaa gtggcgaagg
     3121 tggggcaagt ggtactttta gcataaaagg aaatttaaac ttaataggca atttacaagt
     3181 tagtggaaat ataagcgata gcaaaggtga tttaacaaat catacccatt cttgtacttg
     3241 tggtgccaca gcttcaccaa gataggaaaa actatgaaag aattattttt gcttttattt
     3301 tcattagtct tttttatgct cttttgtatg ggggcatttt atgctttttt aaacctaaac
     3361 ttttttatta aaagcatttt tataggcttt tttatagctt ttatgttttt aggattttct
     3421 caaatactag aaaacatttt tgaattttac aaaggtttaa aatgaattac atggtaagca
     3481 tcgaagaaag tatcaaagac attttaatca ctcctttagg ctcaagagta atgagacctg
     3541 aatatggttc tttactttat acactcatag atagaaaaat cgatgatgat tttaagataa
     3601 agcttactag atacactgca gaagcaattt caaagtggga aaaaagagta aagctaaaag
     3661 gtgtgagact taatgagtgt aaagacaata aattaagcat taccttgctt tttgaaaatt
     3721 atggggattt aaccatggag ctaggcaaat gagtgagctt ttaagtgcaa atgatagcta
     3781 ttttaaacaa agctttttaa aggatatccc ttatccacaa atcatagaag agcttgatta
     3841 tgaaaagctt ttaaaagcct atgaagaact ttttaaaagc tttttaaaag ataatgtaga
     3901 gcttttagaa tctgatcctt ttaaagccat tttagaagct ttagcttata gagaaatgat
     3961 aattagagca agaattaatg agagtataaa agcaacttat cttcattatg caaagggaag
     4021 tgatttagat aatgtagtag ctaatggcta tttgatacaa aggcttaaag gggttaagcc
     4081 cacagctaaa gtagagtttg aattaaatac tttacttact tatgatgtca ttatcccaaa
     4141 aggtgcaatt ttttcaaatg aaaaagcaga ccttgccact ttaaaagaag aagtggtaat
     4201 taaaaaaggg caaagtaaag cacaaggtat tttagaactt gatgaattta ttcaaagcaa
     4261 agaaagtaaa accgagtttt tacaaactcc actgcctttt gtgactaaga ttaaacaact
     4321 agaatatttt agtggtggag ccagtgagga aagtgatgaa gccttaagag aaagggctgt
     4381 aatgagtgta catcgctttt caaccgcagg aagtgaaaaa ggctatatct atcacgcttt
     4441 aagcgcaagt gcaaaagtag cttccataaa agctttaaac aatggagcag gaaaagtaag
     4501 agttatcatt aaaagtgaag atgaattaag cgttgatgtg gttaaagagt atttaagtgc
     4561 agatgagcga agacctttaa ctgatgaagt cagcgttgag ttagctaaaa aaagagagtt
     4621 tatcgtagat gccaaacttt tacttttaga attaagccgt gctaatgaaa ttagtgaaaa
     4681 aatcaatgcc ttacaaagtg attttgattt aagcgtggat ttagcactgg gatttattta
     4741 taaatgctta catcaagatg gggtttataa aagtgaaatt ttaagcatta aagaaaaaat
     4801 cataaatgaa gaagagcaag aattaaaaga cttaccctta gaaaatataa taatagctga
     4861 tgatgagttt gcaaccctta gcttttcact tagttatgaa aaggcagtac tatgaagggg
     4921 cattgcgtag caatgggtcg ggaagccttc agtaaaagcg actttgggcg aacttcgttt
     4981 gcacaaagtg atagcataaa aaaggcagta ctatgaatac actaatacta aaccaccatc
     5041 caaaacaaag caaagccatt gatttaagtg ctaaaacaag atttgaagat ttaaatttag
     5101 ctagtatcac aaatctagct ctaaattgcg atgaaagatt attgccaatt ttagccaatg
     5161 cttatgatgt aagtattgat ggtttaagcc aaaaagaatc aagaaagctt atatctaaag
     5221 ccttgctttt agatagatac aacggcacaa cttgggctat aaaagaagct ttaagagctg
     5281 tatttcctac tgcagtggtt aaagagtggt ttaattatgg tggaaagcct tattttttta
     5341 aagttaaagt aagcacaact aatgttagct ttgatgaaag aacgcttaat actttagaaa
     5401 gactaattta tgattttaaa aatgttagaa gcgttttaga agcaattgaa atagagattg
     5461 aaagtaaaaa tgatagtttt aatgctaatg cacaaataag tggagaaact atagaaatct
     5521 taccttttca aaccacgcaa attgaaaaca atcagaaacc aagtttaaat gcaatgggtg
     5581 tttttatgtg tgaaataata agaactaata ttgattttaa aggagtgtat taatggcaaa
     5641 aagtgaatac tataccatac taacaaaaat tggtattgct aaatttattg ccgcaagagc
     5701 aagtggaaat ggtatcaatt taaaaagctt taaattaagt tcaaaagtta ttttgcccag
     5761 cgaagaaatg caaagcttag aagagattgt ttatgaagct aatattagta gcaaaagcgt
     5821 ggatgaaagc aatccaaact atgtgaattt aatgtgtcat gtgccaagca atgtgggcgg
     5881 gtttgaagtt aatgcagtag gcatttatga tgaagcagga gatttgcttg cagttggaaa
     5941 tgtcccacgc acttataaac ctatcttaaa agaaggcagc gctaaagagc ttatgataaa
     6001 aattgtcatg gagctttcta atgcagagga agttatttta aagctagatc ctagtgtgat
     6061 tatggcaagt cgtgattatg tggatgctat taaagtggaa ctcaatctta aaattgatgc
     6121 tttaatgcaa aaatatgatg cagagtttaa aaaagtatgg gatgagtttg ctaaatatct
     6181 tttagaaaat aaatttaata cagaaattgc caaatatgtt actttagcta ctaatcaaac
     6241 cattacagga gctaaagact ttaccaaact acctacaagc tctataaaag ctacaaatga
     6301 caatcaattt gtaaatttag ctaccttaaa agaacaagct cctagtttaa tgggaggatt
     6361 gggagtaaat caagcttggc aaaatgtttc aagagccttt gatgtaactt atacaaataa
     6421 tacaggaaaa cctatagcag ccaaatttca agttaatgct agtgcaagtg ggggtgtcag
     6481 tttttcttgt agtgagcaat ttgtagtttc tatgtttcaa acttcattat ccaatggtgg
     6541 agtaagtcga acttattttg gttttggaat cattccacca aatgggcaat acagattaaa
     6601 tacaccagaa cacagcggat tttacccaag caaaagcatt gtatctttta tggagcttag
     6661 ataagcatca agcaaataag gagaaaaaat gaaatatttt atagacaaaa acgataataa
     6721 tcaaatttat gcttatgagg atgaagtgag cgatgagcaa attaaaacag gcttaacacc
     6781 tattagcgaa gaagaattta actctttaat aaatcctcct aaaagcgaag aagagctttt
     6841 aaacgaggca aaagagttaa aaatcaacga gattaataca aaaaaagaaa atattctaaa
     6901 tggtggattt tcttttaaag gtaaaatcta tcaaagttct aatgaagatc agttaagaat
     6961 taatggagca gtaaccaatg ctcttgttaa tcctaattta attccttata ttgattggat
     7021 tgcgcttgat aattcaacta caagatttag cgtagatgag tttaaactct ttgcaagtag
     7081 catggcttat tttgtgcaag aaactatttt taaagcaagt gctttaaaag aaaaagctag
     7141 aaatgcacaa agcaaagaag aacttgattt aattgtttgg gagagtgaaa aatgactaaa
     7201 acagaattaa aaagggtttg tgtaaagccc tatgataaag acagatttga agtaattagt
     7261 gattatgctt tttctttgcc aaattataaa ggcattgtac cacaaggctt taaaactgat
     7321 ggtgcaagta tcccacgcct tttttggtct ttgtttccac cttttaaaag tgagtatttt
     7381 agtgcttgtg tggtgcatga ttttttatgc gaaaaagcaa attcaagaac tgattatagg
     7441 acagctgatt tagcattaaa agaagctatg actttgcttg gatgttctaa gtttaaaatc
     7501 tttgtatttt atcattcttg caatctttat cacgcaataa aatgcttgat aaaaggaaaa
     7561 taaaaaaaag gtgagctacc cacgcagtgg gacgggggct ttagtaaaag cgactttggg
     7621 cggattttat tcgcacaaag tgaaagcata aaaaggagtt aaaatgaaag attatggaat
     7681 ttcttttatt ccagatatta atcaaggctc aaaagagcca agtgaaccta tagttagtga
     7741 taagcttaat gctcaaaaag ttaatgagct tatagataaa aaactaaagc tttttaaaga
     7801 agagcttatt aataaagagg agcttaaaag tctcattgag gaaattttac aagatcaaaa
     7861 tttccaaaat acaaacataa aaatatcaaa aactccacct aactacaata cacaagctaa
     7921 agtgggagaa atttgggcgg ttgtagaaag taaaaagcaa ttatttattt gcactgctaa
     7981 tgataatgat tttacaagct gggttgattt actaggagat ggtagcaatg atattgcccc
     8041 taaagaaaaa atcattatca catttgataa cactacaaca ggtggacaat atgggggttg
     8101 tatgagtgat ttaagacttg gttttgaaaa tggttttgct actccaaata aagttcaaga
     8161 tgaatatgaa aacgcaaaat tcactatgac taaagatggc aatgggctta ataggagtga
     8221 ttttactata gattctaatc ctactcctac agataatcaa attgtaggaa cgattaaaac
     8281 aagtgggatt tatcaagaaa cctatcacaa aatcgcccat gtgtttaaaa aatataatgg
     8341 tggcgctgat gagtgttgct tatggtctag ttcaggaagt agagaggtaa gcatagaact
     8401 tgaaaataca ccaatgccta ataagctttt tgctagaggt aatggatatt atggtcaaac
     8461 agaaattacc aatgtaagag taaaaaaatc catttttata ggtgagcaag aaattcaaag
     8521 tgaagatttt aatgttgaaa agttagaagc tagttctgat acttatggag attatgcctt
     8581 tttatttgaa atttctaaac aagatcaaat tgttatgaaa aaagagctta atttaaatcc
     8641 taaaaaaaca aaaaaataca aaaaaatgta aagaaataag gagtgaataa tggcagcaaa
     8701 ttatggagtt aattttaata tcagtaatgg tgcagcaagt cctattaaag tgcaaagtga
     8761 tacgcctatt ggtattgctg gggctataaa aggtgcaagt aaagaaatga tttacacaaa
     8821 ggctggttat gaaagcgcgg atagctttcc aatctttgcc ttttcaaatg taagcaaagc
     8881 aaaagaattt gtaaacgatt taatcaaaga aaataacata caagatttta gacttttaga
     8941 tactttagaa tgtatcaatc tacaaaatgt aagtaatgtc ataattatca gcttttttga
     9001 agaaagcgag gaaagtgaaa acactttaac ccatattgtt gatgccatag aagcctttaa
     9061 aaaagccaag cataaaacag gctttagccc tgatttaatc attgctcctt attactcaca
     9121 tgaagcagga gtaaaggcta agcttgaaag tgtggcaagt tctatgaata tcacagctat
     9181 tgtggatctt tacgctacaa atgttggcga agctattaat acaatggagg cttttagctc
     9241 taaaagatta attgccactt ggccacaggt tcaaatctta aatacacaag gaaaatacgc
     9301 ttatgttcca caatctccta tcatcgcagg tttaatagcc catacagatg gggataaaga
     9361 atatggcttt agtgattctt actcaaatag agtgatgaat ggggttactg gcacagaaca
     9421 ttttatagag tttatcaatg gctttgattg tgatgcagaa agattaagaa atgctcatat
     9481 ttcaacttgt attttaggtg aaggttatcg ctcttggggt ggggaaacta gccacgaaga
     9541 tacgatttgg caagatttag ctcgtgtaag aacttttgat cgtatagccc tagcaggaca
     9601 aaaagcagct tttaaggcta ttgataaaaa agcaagtgaa ttatatttta taaaaatcag
     9661 cattgaagaa ttgctaagag atttaaaagg agctaaggtt ttaattggct atgaggtaag
     9721 ctgggatgaa gaaagaaaca cagatgccaa tgtgagtgct ggtaagtttt atctaaatat
     9781 aaaaatgatg aataatccaa tcgttaaaca aatcacttta gagttcatct actctgatga
     9841 atgggcgagt gatttgatta aaactattag tgcagagtaa aaggtggctt ttggggcttt
     9901 cttaaagaga gtgtaaagca caagagaggg gtcaagggga tgaaatccct tgttgcaagg
     9961 tggaatttac ttccaccgcg aagttaaaag aaggagaata acatgtttaa taaagtacct
    10021 caagtaattg aacaagcaaa ttgttttata gatgggtatg gttatgctgg ggtagcaaga
    10081 gatattactt tgcctattat agaacaagaa gtattagaaa gcaaaggagc gctgagtgca
    10141 aattatggca cgggtgtatt taaagcaatg gaatgctctt ttaaaattag tgagatggga
    10201 gaacaagctt ttgaagcttt tggagtaaat actttttcta aaacaaaaat cccacttgtt
    10261 tttaaagcaa gtattcatca aagcggatca ggaaaacaag tgccttttgt agtggagtta
    10321 aatggagaat ttacatctat gactccccct tctattgtag caggtggcga atttacaagt
    10381 gaaataaaaa tcaatgtgca ttttataaaa atcacaatgg atggcaaaag actattttta
    10441 gctgatataa aaaatcttat tctagaattt aatggcattg ataaaatggc aaaagtaaaa
    10501 gcaaatttaa gtctataagg agaaaattat gtcaaaaata atcaaattat caaatggaaa
    10561 tgaagttaaa tttaatcccc caacagctgg gatgttgcgt cgttctatgg atatgcaaaa
    10621 aggcgaaggt tcgagagctt tttatatgat aggagaatgt actaatatga gtttagaaga
    10681 gcttgataat ttaagtcttg aagacattac tcttttaagc aatgaattaa acaattacca
    10741 aactcccagt gggagcactg aataatgaag ctattgcgtt aatagctcat tatttgcatt
    10801 tttcttatag tgaaattatg agtttaaaca taaaagatta tcttgaattt ttagatatca
    10861 gtttaaaaat cgctaagagt gtttaagctt aaaaaaacaa tagataaagg ttgcaatata
    10921 aagtattaaa gaaaaaagca caaaaaatga agtgatatta acaaaacctg ctaaataatc
    10981 atcacttaaa aaagaaagca taaaagcgac aaaaataccg agtgttaaaa aggctttaaa
    11041 aacgatttta aagtttttta aaaagatgat tttagcatta aaagcattgt ctattttttt
    11101 cataaataga ttttacaata aaaaggaaaa atatgcaaga tttaggactt agctttggta
    11161 tatctttagc ctttaaaggc tttaaagaat ttgctaaaaa cactgaagct ttaaaaaagt
    11221 ttagtgctaa tttggatcaa agcaataaaa gtgtaaaagc cttaaataaa agtattgatg
    11281 cattagaaaa atccaaggca aagattaaag caataggtga agagtttagt gctttaaaag
    11341 gtgagcttat ggctaaaggt gcaagtgctt tagctatcgg tgtgcctgta aaaatcagtg
    11401 ctaatcttga agatgatatg aataatataa acgccttttt aaatacaaat aatgaaagtt
    11461 taaatctttt acgaaaaaac tttttaaaac taagttctaa tataggaatg aatgttaatg
    11521 agcttactaa attgggtgaa gcaggagcaa ggcttgggat aaaaagcgaa agtgagcttt
    11581 taaaatttag cgaacttggt gctaagtata gcaaagtctt taaattaaat aatgaagaaa
    11641 gtattaattt catgagtaag ctttctaata tttataaatt aaataccaaa gatatgcaaa
    11701 atcttggaga taagataatt ggtgtagcta aagcaagcaa tgtaagtgct tcaagtgttg
    11761 ccaagataat gaatgaagta ggaggcgatg caaagcttat tggtatgagt gcagagggtg
    11821 cggcagcttt aagtgctgct tttgcaagtg cgactaaaga tgaaggcgaa gcgattggaa
    11881 cttttaaagc aatgactagc gttatgagta atttaaataa tgcaagtgat gatatgaaaa
    11941 ccaagttttt aagcttgggg cttagtacag aacaactaag cgcttatttt aaacaagatg
    12001 caagtggtgc ggttaaagta cttttaaatc agataaaaac cttaccaaaa gatgagatga
    12061 ctgatttttt aaattcagtt tttgggacgg gtgctgcagg catgatgcaa aatttagtcg
    12121 acaatacaga taagtatgaa caagctttaa aatctttaaa aaatacaaaa atgggtgctt
    12181 taaataatga atttaaaaag ttaggagact ccactaacac aagctttgca aaacttagtg
    12241 ccagtatggc aaatcttagt gcaagcatag gcgaagcttt agcacctgct ttaagctttg
    12301 tcatggatag tatctcatct ttgattaact ttattagaga gattattgat gcttttccaa
    12361 atttaagtaa agttataggt accttagtag tttctttaac tatagctagt gtggccctta
    12421 gtgctttaaa agtaggattt ttggttgcaa aaattgcagg agcgcaattt gcttttacgc
    12481 ttaatgctat aagaactgct tttaatatat taaaaatcgc ttttttaacc aaccctatag
    12541 ggcttgtttt aatgtcaatt gccgccattg caacacttgt tatcatgaac tgggataaag
    12601 ttaaaacctt tttcattgga tttatagata aaattagttc cgtttttagc ggatttggcg
    12661 agttttttag ctctttatgg ggtggtttat ttaattggtt tgcttctaag tttgaatggt
    12721 taagcaaagc atttgcaaag attaaagata tagctaaaag cgtggcctct ttttttggtt
    12781 ttagtgataa tgataaaaaa gttgatggag aaaaatatca aaatttacaa aatgataatt
    12841 ctagaaccca tcatggtata gtaagatcag gtgctccaaa gcatgaagca agacaagctg
    12901 aaattgccgc tttatccaaa agaagtgata tttctaaaaa aaatgaaatc aatgtaaata
    12961 ttaatggaac ttttaatata agttcaaata atggagtgtt tgatttaaaa gctttcgcaa
    13021 aagaagttga aaatagtgtt ttaagtgcat taaataaaaa tgcagataaa aaagtgcaga
    13081 caacaatttg gggttaaaat gatattttgt ttaggtgagt ttgagtttga agctttaaat
    13141 gtagatgagc ttgaaaaaaa ttatgaatac ggcattagaa gcattgaacg tattaataat
    13201 cataatgctt taatcagcgt tgctaaagca aatgaaagta ttaaaataag tggtaaaact
    13261 ttaccgctta gtaaagataa aaacacttat ttagatactt taaagcaaat ggcttctcaa
    13321 aataaaagct atgcaatgtg tagtgccagt ggagtttatt ttggaaaatt tgcgatttta
    13381 agtatcagcg aaaaacaaag tgctttttta gaaggcagtg gctttttaac acaaaatttt
    13441 gaacttaatt tacaaaggga ttttgatgag tgagatttac attgcaaaaa acaatgaaag
    13501 gcttgatagt gtggtttata ggcattatgg aacgcttttg tattttgatc aagttttatt
    13561 agccaatcca aaattagagc ctcttttaaa aacaggagat aaagtgattt tacctaatat
    13621 tgaaattcaa gaaaacaagg aagaaacttt atggtaaatc atcctagctt taagataaaa
    13681 gcaaatgata aagatattac acaaaagata agtcttaatc ttattaatct aagctttgat
    13741 gataaggcca aggatgaaag tgatgagata agcatcagtt taaatggact ttatgcaaga
    13801 gctccttttg gcgataagtt agaactttgg cttggatttg atgaaaaact ttttaaatgt
    13861 ggtactttta gcattaatag ttttagtaaa aattatagct ctaaaacaac agatattaaa
    13921 gctactgcga ttaattttgc tagcaatatt aaaaacaaaa aatcaaggac ttgggaaaat
    13981 accaatcttg cagatattgc tttaaaaatt gctggggaaa ataatttaaa agcaaaaaca
    14041 aataatgcaa acaaagctta tatcaaacat gaacttcaaa acaatgtaag cgatattgag
    14101 tttatttata ctctttgtgc aaaatatggc tttttagctt gcataaaaga acaaactctt
    14161 atcatcatag agcaaaaaga ggcagcacaa gagggtgtaa agggtggcgg caagcaagag
    14221 ggtggcatca aatatacttt agatataagt gagcttagtg atttaaatat cagtattaaa
    14281 aatcgcaatg attatacagg cgttaaacta acttaccaag atatagaaca aggcattgtt
    14341 aaaagcgttt taagtggcaa tgataagggt tgtgtttatg agctaaaggt tgctggagta
    14401 aagaatgata gtgaggcact aaacttggca aatgctaagc ttaatgcttt aaataaaggc
    14461 tcttttgaag gaagctttag catgataggg aaaaatatca aagcaggggc aaatttagaa
    14521 ataaaaggca ttgatgaaaa ggttattttt agtattaaag atgtaaaaca tgacttttct
    14581 ttgagtggct atactataag cgtgaatttt gaagggtaat aaggaagact aaagccttcc
    14641 tttttctaaa aactagcaaa agcattatag ctttattttt aaagactagc tttttaaatt
    14701 ttattttgaa aggagtttgt atgaaaaata atacagacaa atttctaaaa actagcacac
    14761 ttactaaacc tacaagaact acactaaaag ctccgtttgc ttgggtgggt ggtaaaaact
    14821 atttagctaa agaaatcatc gctttaatgc ctgagcataa aagctatatt gaagtctttg
    14881 gtggagcttt aagtgttttt tatcaaaaaa gtgcttcaaa aatagaagtc attaacgaca
    14941 ttaacgacga gcttattaat ttacatcttt gtataagaaa taaaccccaa agcctagcaa
    15001 atgtgcttaa ttctatgata ataagtagaa aaatctttca tatgcttaaa aataaagaaa
    15061 tcaagccaaa aaatgactta gaaagggctg ctttttattt ttatcttatc aatacttctt
    15121 ttggatcaag catgggacaa tttgccatga gtaagcaaag agcaccaaag agattatata
    15181 gagactttag cttacatgca aaaagactta aaaatgccag tattgaaaat aaaagctttg
    15241 aatatatttt aaaagaatat gattataatg aagctttgtt ttatttagat ccaccttatg
    15301 tagggactga gaattattat aaaaacacag gaggttttgg gctaaaagaa catgaacttt
    15361 tatgtaattt gct
//
LOCUS       DAZAND010000034        15286 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.034, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000034 DAZAND010000000
VERSION     DAZAND010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15286
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.034"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..491
                     /locus_tag="ACHDOB_000827"
     CDS             <1..491
                     /locus_tag="ACHDOB_000827"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004594 - pantothenate kinase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HFN3325758.1"
                     /translation="HLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAG
                     SAITIDIISNSIHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALS
                     YGVFKGIYLLIKDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNL
                     LY"
     gene            610..1956
                     /gene="mqo"
                     /locus_tag="ACHDOB_000828"
     CDS             610..1956
                     /gene="mqo"
                     /locus_tag="ACHDOB_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HFN3325759.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKIAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIVHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKTSDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICNYLGMEFNEDKFSSELL"
     gene            2005..3447
                     /gene="pyk"
                     /locus_tag="ACHDOB_000829"
     CDS             2005..3447
                     /gene="pyk"
                     /locus_tag="ACHDOB_000829"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HFN3325760.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVSIDNQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            3545..4180
                     /locus_tag="ACHDOB_000830"
     CDS             3545..4180
                     /locus_tag="ACHDOB_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325761.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(4211..6673)
                     /gene="pflB"
                     /locus_tag="ACHDOB_000831"
     CDS             complement(4211..6673)
                     /gene="pflB"
                     /locus_tag="ACHDOB_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HFN3325762.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDAYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDSA
                     DAGVYLNTSKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPSIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(6683..7918)
                     /gene="serS"
                     /locus_tag="ACHDOB_000832"
     CDS             complement(6683..7918)
                     /gene="serS"
                     /locus_tag="ACHDOB_000832"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HFN3325763.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKTA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSVKVNALENELEEIAHAIPN
                     IPDECVPVGEDEDENVELKKVLNPPSFDFTPKEHFELGESLNWLDFVRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSHGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDALKKYF"
     gene            complement(7929..8888)
                     /gene="trpS"
                     /locus_tag="ACHDOB_000833"
     CDS             complement(7929..8888)
                     /gene="trpS"
                     /locus_tag="ACHDOB_000833"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HFN3325764.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTQIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPEAKVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKMYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(8885..9382)
                     /gene="aroK"
                     /locus_tag="ACHDOB_000834"
     CDS             complement(8885..9382)
                     /gene="aroK"
                     /locus_tag="ACHDOB_000834"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004765 - shikimate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HFN3325765.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKISEIFAQKGEIFFREQEQKMADFFSSCEKTCIATGGGFVNVSNLEKVGFCIYLKAS
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYELKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(9369..10751)
                     /gene="der"
                     /locus_tag="ACHDOB_000835"
     CDS             complement(9369..10751)
                     /gene="der"
                     /locus_tag="ACHDOB_000835"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HFN3325766.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVVNKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELHLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRSHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            10853..11785
                     /locus_tag="ACHDOB_000836"
     CDS             10853..11785
                     /locus_tag="ACHDOB_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFN3325767.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGHFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            11782..12597
                     /gene="kdsA"
                     /locus_tag="ACHDOB_000837"
     CDS             11782..12597
                     /gene="kdsA"
                     /locus_tag="ACHDOB_000837"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HFN3325768.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQAAAVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQKNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            12594..13058
                     /gene="ribE"
                     /locus_tag="ACHDOB_000838"
     CDS             12594..13058
                     /gene="ribE"
                     /locus_tag="ACHDOB_000838"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HFN3325769.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            13058..13456
                     /gene="nusB"
                     /locus_tag="ACHDOB_000839"
     CDS             13058..13456
                     /gene="nusB"
                     /locus_tag="ACHDOB_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HFN3325770.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYHGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            13453..14130
                     /gene="pyrF"
                     /locus_tag="ACHDOB_000840"
                     /pseudo
     CDS             13453..14130
                     /gene="pyrF"
                     /locus_tag="ACHDOB_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
     gene            14188..15081
                     /gene="msrP"
                     /locus_tag="ACHDOB_000841"
     CDS             14188..15081
                     /gene="msrP"
                     /locus_tag="ACHDOB_000841"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016667 - oxidoreductase activity, acting
                     on a sulfur group of donors [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HFN3325771.1"
                     /translation="MIITPENLYKKRRDFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKKKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFSLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            15081..>15286
                     /locus_tag="ACHDOB_000842"
     CDS             15081..>15286
                     /locus_tag="ACHDOB_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HFN3325772.1"
                     /translation="MRTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTKNYPKILG"
BASE COUNT         5333 a         2490 c         2308 g         5155 t
ORIGIN      
        1 aacatttaaa aaatcaaaaa aattttatca atcttgaacc ttatttttta tttgatacaa
       61 tttatcaagg attaggaatc gatcgcatag cagcttgtta tactattgaa gatggagttg
      121 ttgtagatgc aggtagtgct attacaattg atattatttc taattctata catcttggtg
      181 gttttatctt gccaggtatt gcaaattata aaaaaattta tagccatatt tcaccacgat
      241 taaaaagtga atttaacact caagttagtc ttgatgcatt cccacaaaaa accatggatg
      301 ctttaagtta tggtgttttt aaaggaattt acctactgat aaaagatgcc gctcaaaata
      361 aaaagcttta tttcactggt ggagatgggc aatttttagc aaattatttc gatcacgcaa
      421 tttatgataa acttttaatc tttcgaggaa tgaaaaagat tataaaagaa aatcctaatt
      481 tactttatta aaaatgttac aaaaattctc attgatatca aaccttaatg aaatttaact
      541 ttttgtaaaa caaattcaat taaacttcta tttagaaaaa agtttattaa aataaaaaaa
      601 ggaaaaacaa tgagccaaca agaatttgat gtgcttgtca tcggagctgg aatttcagga
      661 gcagcattat tttacgagct tgcaagatat acaaatatta aaaatattgc tttgatagaa
      721 aaatataata cagctgcaac attaaattct aagggaacga gtaattctca aaccattcat
      781 tgtggagata ttgaaaccaa ttatacttta gaaaaagcgc gaaaagtaaa aagaacagct
      841 gatatgatag ttaaatatgg actcatgcaa aatgcgcaaa ataatttcat gttttctcat
      901 caaaaaatag ctctagctgt tggagatata gaatgtgatt atatgaaaaa acgctatgaa
      961 gaatttaaag aactttatcc ttatataaaa tttttcgata aagcaaaaat caaacaaatt
     1021 gaacccaagg ttgttttagg agaagattgc aatcaagata gacctgaaaa tatctgcgcc
     1081 atgggtgttg aaagcggcga ggtttttaca actgtagatt ttgggaaaat gagtataaat
     1141 ctaatagaac aagcccaaaa acaaaataaa aatacttttg ttgcctttaa tcaagaaatt
     1201 gttcacatag aaaaaaagga tgatattttt atattaaaaa cctcaaatca tcaagaatac
     1261 catgccaaaa gtgtagttgt taatgctggg gcgcactctt tatatttggc gcataaaatg
     1321 aatttaggta tggataagtc ttgttggcct gttgcaggaa gtttttattt aaccaaacaa
     1381 aaacttttaa atggcaaagt ttatatggtg caaaatccta aacttccatt tgcagctctt
     1441 catggagatc ctgatttgct tgctgatatg aacactcgct ttggacctac tgcacttgtt
     1501 attccaaaac tagaacgtta tcatggacta aaatcagttc cagaattttt cgaagcacta
     1561 aaacttgata aaactgtttt aaaagtaact tttaatatgt ttaaagatgc aacaattaga
     1621 aattacatct tttataatta tctttttgaa ctacctttta ttgataaaag cttatttgtt
     1681 aaagatgcta aaaaaatagt tccaagtctt aaaacaagtg atatttatta tgcaaagggt
     1741 tttggaggcg taagaccaca agttattgat aagactaaag gggaattaat gctaggtgaa
     1801 gcaagcatca cagagacccc tggcattatt ttcaatatga ctccaagtcc tggggcaaca
     1861 agttgtctag gaaatgctga aagagatgca aagcttatat gtaattacct aggaatggaa
     1921 tttaacgaag ataaattttc ttcagaatta ttgtaatcat tttgtttcta tttttagcta
     1981 caataatttc aaaaggagtt taccatgctt aaaaaaacaa aaattgtagc cacagtaggt
     2041 ccagcaagtg aaaaggaaga aattctacgc caaatgatta tcaatggtgt aaatgttttc
     2101 cgtttaaact tttctcatgg aacacatgag tatcataaaa aaaacttaga taccataaga
     2161 agagtagcta aagaattgca tactcgtatt ggaattttac aagacattag tggtcctaaa
     2221 attcgtacag gtgaacttaa agaaccattt gaattaaaaa agggtgatag acttgatttt
     2281 tatcgtgaaa caattttagg ggagaagatt gctcaaaatc attataaaat cagcatcaat
     2341 caaaaatcca ttttagatat gttaaaaatt gatgaatata tttatctata tgatggatca
     2401 attcgtgcta aagtagtaag catagataat caaaaaattg aaaccattat agaaaatgat
     2461 ggttttttaa actcaaataa aggtattaat tttccgaata ctaaaatcaa tattgatgtt
     2521 attacacaaa aagataaaaa tgatttactt tggggtataa aaaatgaagt agatttttta
     2581 gcaatatctt tcgtacaaaa tgcacacgat attgatgaag ttcgtgaaat tttagcacaa
     2641 aataacgcaa aaatatctat ttttgcaaaa attgaaaaat ttgatgcagt agaaaatatt
     2701 gatgagatta ttaaatctag cgatggcata atggttgcaa gaggagactt aggtattgag
     2761 gtaccttatt ataaagttcc taatatccaa aaagaaatta tacaaaaagc aaacaatgcc
     2821 tctaagcctg ttattactgc gactcagatg cttttttcat tagccaaaag caaaaccgcc
     2881 acaagagctg aaatttcaga tgttgcaaat gctgttttag atggaacaga tgcagtaatg
     2941 ctaagtgaag aaagcgccgt tggtatagat cctgcaaacg ctgttgatat aatgtgccaa
     3001 actataatag aaacagaaaa acgctatcca tataacaaat ttaatgattt taatgattta
     3061 gacaatacag ataaaatcat gcgttcttca gctcatcttg caacagatct taacgctgat
     3121 gctatttttt ctttaacaag tagtggaaaa tctgctatta agattgcgag atatcgtcca
     3181 aatatagaaa tcatagcagt agggcattct gaaaaaacct taaactcttt aagtatagtt
     3241 tggggagtta atcctgcgat cttggttaac aaaagtaatg aacttacaga attattaaaa
     3301 gactctgtaa gatcaagtgt tgaaaaaggt tttatggatg aagacaaatg ctatcttcta
     3361 actgcaggct ttccaacagg agtagaaggt actagcaatc ttatccgcat tctcaataaa
     3421 gagcaaattg cttattatct acaataaaac attaaattcc tttgaaaata aggaatttaa
     3481 tgtccttata aattttttaa gtcaaaagtc gatataaatt aaagcctcac acaaaggagc
     3541 aaatatgcaa gtgaatactt tttcaaatat cgctagcatg gcacaaacac aagttagcaa
     3601 taagaaggca gatgatgcta aggaaaacac aaaagacaaa aatgttcaaa gtgctaattc
     3661 tagcaaggat gtagataaaa atacccttga aaaattaaat gcacttggtg gaaagggcat
     3721 tacacaaatt tacctagttc agtttcaaca gcaaacaatg aatgctgtaa taggttcgag
     3781 caatgcccaa actggactag atagtctttt aaatggtgcc aatttagata ctgcgaaatc
     3841 tatacttaca aatattgatt ttgcatcctt aggctacagt ggcaaaaatc cacttgatat
     3901 gaatacagat gaacttcaac aacttgtaag tgaagatggt ttttttggag tggaaaatac
     3961 agccaatcgc atcgcggatt ttgttattaa aggcggtggc gacgatgttg aaaaattgaa
     4021 aaaaggtctt gaaggtatga aaaaaggatt tgagcaagca gaaaaaatgt ggggtggaga
     4081 acttcctcaa atcagtcaag atacaataga tgcggcactt aaaaaagtta gcgatcgcat
     4141 tgatgaacta ggcggaaaaa ctctagatct tcaagcttaa ctaaaaatgc ttagaaattt
     4201 ctaagcattt ttagttgtta ttaatatcaa aagtaaaaaa ttcactctta aaattattag
     4261 gtaaagtttt atactgagat atcgcagctt catagttctt tacttcttga tacaacatac
     4321 caagagctgc tttactttct ttgttatttt tatctgtaag tttagaaagc tgcaaaagcg
     4381 ctatagctga atttggatta tttgcaccta cggctgctac ggctgctaaa aataaagttt
     4441 tagtatcttt agctccataa tcatcaatca aagaattgta aagcgcataa gcctcctcgt
     4501 attgctgtgc aaaaatatcc aaataagcta aagtttgcaa aataccctca tcttttgctc
     4561 ctgaaacatt aatcaactct ttaaatttct gtctttctaa atttaaaagc cctgcaatat
     4621 gcattaaatt aacataaaat tccctagcga tacttggccc accaaaaaca ctacgataat
     4681 caagttttaa atttttaaaa tgaatttgag cattttgagc atattcttta atatttaaat
     4741 ttgaatttaa agaattaaaa tacaaaatat ttgccaaaat atcttcaggc aactctgaac
     4801 gcaatttagc aattttcaca tctacttgat tattaaggtt attattttta gcaacaatag
     4861 cttcaaaaat caaactcaaa ggcgtgtctt tttttgtttc atctaaataa ggaagcatag
     4921 aaatataatt attattaact aaaaataaca tacttttttg catattagct ttaaaattag
     4981 aatcagcagc tatattatca agaatttcat tgtaaagttt agttgtatca atatcaatta
     5041 attttgcaca aaacatagca aaagcacctg ctaagtaatt tttaggatta agatgatatg
     5101 aacttgaaaa atgcttataa gcaagttcat aattttgcat ttgggcataa gttaaagcca
     5161 aattataatg taaaatacta tgttctggat aatccttgat aagtttttga aattcttggt
     5221 tagcaaggcg taacttctga tttaatgcat agttaataat attggcaatt tttacattgg
     5281 tagatgaaag agccttgctt gtattaagat aaactcccgc atcagcacta tcatcaacga
     5341 aatctgtaac attagctttt ttaatatata aagcagcctg cttactatca aaaacttgat
     5401 aaggcgcaaa ataaaaaagc aaatcgaatt gatctttttg tttttttaac aaatcttttg
     5461 aaaaagaatt ttgagcaact gctatattaa aaagatcctt atttaaacga acttgaattt
     5521 tataagcatc taaaatctta tatctatctt tatcattatc ataagaattt tgcaagcgcg
     5581 ctaacatatc ttgataattt cctgttttaa tatcaaccaa tgttaaagcc gccaaacttt
     5641 gattaaaatc tctttcaatt ttcatcgctg tacttaaagc gactttagct ttagcatatt
     5701 ctcctattct agcgtataaa agacctaaag ataaactaga ttcaaaattg ccttgagaat
     5761 ttaattgctg tatagccttg gaatcaaagt ccatttttgc ataaatttta gcagacaaat
     5821 actttgcaac atcagaatac ggctccacat ctgttctttg taacatttgt aaagcctcag
     5881 ggtaatatcc tttgtaataa ttaatcaagc ttaaataata atcatataat tttgattttc
     5941 cttcttttgg aagatacact tgagctaaat caatataata tctaaatttt tccttatcat
     6001 taagctttaa agcacaaaca gcagcattga tagcagctac actttgattt tctccattgg
     6061 ctatagcttt cttgaagctt tcaaaagctt cttggaattt attctcattc atttgagaaa
     6121 cgcctaaatt ataattagat aaagattcgt tatatacggc aacttgctca taaactttta
     6181 aagcctgttc aacctcaccc tttaaatata aagcatttgc tttttggatc ataccatcaa
     6241 ttctttgcat atcattgtat ttatatgatt catcaggcat aacaacaggt tgttctaaag
     6301 gcttagaagc tataatatct ggtttaattt ttccttcact aaaagttaaa taaaaaagtg
     6361 taaaaactaa aatacaaata atccccaaag ataaacccac aagagacata aacttacgat
     6421 ctttatacca aggcgtaggc tcttgacttt caacttcttc aaaagttgat acatcttcag
     6481 gcgcactttc tcttgtaaat ttaaaaccac tatcactatt ttcttgaggt aattcttctg
     6541 gcaatgatgc aaattcttca tcttctggag cttgcccctc ttgcccttta aatccctcta
     6601 aactctcatc aagtcttggt tgatttaagc catcttcggg tttttctagt attatatctt
     6661 cttgttcagc catctatact ctttaaaaat attttttcaa agcatcagga atatgaattt
     6721 ttccttcttt atcttgataa ttttccataa tcgctaccaa ggttcttcct actgccaaag
     6781 atgagccatt aagagtgtga acgagttcat tttttccttg ttcattttta tagcgaattt
     6841 tagcacgtct tgcttgaaaa tcacgacaat ttgaaaccga gctaatctca cgatatttat
     6901 tttgtcctgg aagccacact tcaagatcca cagtttttgc tgcactaaaa cccaaatctc
     6961 cagtgcaaag catcaaatgt ctatgtgcta aacctaaaga actcagcaaa tcacttgcac
     7021 actcaagcat ttcattaaac acactatcac tttgctcagg tttagtgata cttacaagct
     7081 ctactttttc aaactggtgt tgtctgataa tacctcttgt atcacgccct gcactacctg
     7141 cttcttttct aaaacaagcg ctataacaag tcatttttat aggtaaagtt tcactcgcta
     7201 aaatttctcc actataaaga ttggttactg gaatttcaga agttgagatt aaatacaaat
     7261 cctcatcatc taccttatac atatcttctt taaattttgg caactgaccc gtcccaaaca
     7321 tagtagcacc atttaccaaa aaaggtacat taacaaactc aaatccatga cttctattaa
     7381 aatctatcat ataatttacc aaagcacggc ttaataaagc tccttcgttc ttaagcacac
     7441 aaaaacggct ttgtgaaatt tttaccccac gcacaaaatc aagccaattt aaactctcgc
     7501 ctaattcaaa atgttctttt ggagtaaaat caaagctagg cggatttaat acttttttaa
     7561 gctccacatt ttcatcttca tcttcaccca caggcacaca ttcatcagga atatttggga
     7621 tggcatgagc gatttcttca agctcatttt ctaaagcatt tactttaacg ctttgctcat
     7681 taattttgct tttattttcg cttaattttg cttttaaact ttctttatct tcggctgtag
     7741 caagctcttt actgaattta ttttgaaaag cttgaaattc ttctaaagct gttttttctt
     7801 tttttaaact tgcaaaaagt tcagcaagtt tttttaagat attttcatca acttttttat
     7861 tttttaactt tttagccact tcatcaaaat tattttgcaa attttttaaa tctagcattt
     7921 tctactcctt aaagtccgat tttttcataa attttttgca ttttttcttg ggcgattttt
     7981 cttgcttttg tcgcaccaaa atccaaaatt tctttcaaat gtgaaggctt ttctaaaagc
     8041 tcattgtatt tttctctcgc ttctttaaaa taagcattta caagctcgtt taaatacatt
     8101 ttaaaatgtc cataaccctc accacctttt tcatagcgta tttgtaattc tttttgccct
     8161 gattcatcta aaaaaagctt tgcgatttta aaaatattgc agttttcatg atcttttgga
     8221 tcttctaaag cggtgctatc tgtaactatg gaagaaattt gtttttttaa ggttttttca
     8281 ctgctaaaaa tatctatagt attttgataa gatttactca tttttgcccc atcggtgcct
     8341 acaactacag ctacttcttc attaacttta gcctctggaa gggtaaaaat ttcaccccat
     8401 tcattattaa cttttaaagc aatatcgcgt gcgatttcaa catgctggat ttgatctttt
     8461 cctacaggga caatttgtgt atcaaaaagc aaaatatcag ctgccattaa aacaggataa
     8521 gaaaaaagcc catgtgaagc actaagcccc ttagcaactt tatccttgta actatgcgca
     8581 cgctctaata aacccatagg agtaaattgc gataaaatcc aataaagctc cataacttcc
     8641 ttaacgtcac tttgcaacca aaaaacgctt ttttgaggat ctataccaag gcttaaaaaa
     8701 gccgcagcag cttttaagga attttgttta agtttttctc catcttgaga agaagtcatg
     8761 gcatgataat tagcaataaa cataaacatt tggctttttt cttgtgcatc taccatttgc
     8821 ttaatcgcac caaaataatt acctatatgc aaatcgccac ttggctgaag gcctgttaat
     8881 actctcattt tatcaccttt ttaatctcgc ttaaaagctc atctatattt ttattttcta
     8941 tatttaaaat aaaatttgcc tttagttcat acttgcttaa acgctcatta tataattttt
     9001 ttgctttaat ttcatcataa aataaaggtc ttttagaaat ttcatctttg tctaaacgct
     9061 tttttaaata ttcaaaactt gcttttaaat aaatacaaaa acctactttt tctaaatttg
     9121 aaacattaac aaaacccccg cctgtagcaa tacaagtttt ctcacaagaa ctaaaaaaat
     9181 cagccatttt ttgctcttgt tctctaaaaa aaatctcgcc tttttgtgcg aaaatttcac
     9241 tgattttttg attaaatttt tgttctatta aaaaatcact atctaaaaaa acaagatcta
     9301 aatccttagc caaagctctt gctaaagtgc tttttccaga acccataaat cctataaaaa
     9361 cgatattttt agctttcatc attttcttta ctgccctttt tacgcgaagc aatcactaaa
     9421 ggcacacctt cgaaattaaa ttcttttctg atttgatttt gtaaataacg cttatagcta
     9481 aaatgcaagg ccttaggacg attcataata agcgcaattt ttggcggtgc taagtcgtat
     9541 tgtactgcat aataaatttt aaccaatttc ccataatcat gcggcaaagg atgtgatctt
     9601 gtggcatttt ctatcagagt attaagctta gaagtttgga ttttttgagt gaaattctca
     9661 aaaatttgca aaattttatc gagtaaaaca tgcacccttt ttccacttaa agccgatacg
     9721 ctaatcacag gtgcgtaagc tagaaattta aaacgatcaa gatgcaattc ttttacagtt
     9781 ttatcaaaat ccatctcact tttatcccat ttatttaaaa caataatcac acccaaataa
     9841 tgcttagcca caagcccagc aatgcgttca tcaagttcgt taaagccctc atgcgcatct
     9901 aaaaccaaaa gtgctatttg agaatgagat aaaatttttt ccgtgcgatt tagggcaaag
     9961 cgttcgagtc cttgaatttt accccttttt ctaatacctg cagtatcaac aaattctatc
    10021 actttatctt tatgaactac actttcatta acaggatcta tagtagttcc tgcgatagaa
    10081 cttacaacac tgcgttcttg tttaaccaaa gcatttaaaa gacttgattt tccaacattt
    10141 acacgcccta caatacccac tctgatatga ttttgatcga cttctttaaa ttgaaattct
    10201 tttccttctt cataatgctc taaaaaatct tctaaatttt cttcttcatc agggattaaa
    10261 aactcttcat gtaaaaattt ttcaagccat tcataaagtt catctaagcc tacattatgg
    10321 gttactgaaa gattgaagat ttcctttact ccaaaatttg caaactccca agccctttct
    10381 tcatcttttt tattatctac tttattaacc actaaggcta taggttttcc aagttttttt
    10441 aaagaataaa aaaactgtct atcctcatca tcaggcgcta atttcccatc aactagataa
    10501 agtatgatat cgctttcttt agctactttt aaagtgtttt ttttcacatt tttaaaaagt
    10561 tcatcacttt catcaagccc tccactatca ataagcatgg ctttttttga atgaatatga
    10621 atttgcgttt tatttgtatc tctagttgta cctgaaatat cacttgtaat agctattctt
    10681 tgtcttgcca ttctattaaa aagacttgat tttccaacat ttggcttgcc tataagtatg
    10741 atgctttgca tttttttcct agaaaattat atttttaaaa ttatataaaa tttggcttaa
    10801 tattaagcaa aaaaagacta gaattagccc agattttagt caaggaaaaa aaatgctaaa
    10861 agtaatcaag cataatttag gaatttattt catgatttta gcatgtttgg attttgcact
    10921 tatgggagct tgtgcaaaaa ttcttagcaa ggaaatgagt tctatagaaa ttatgttttt
    10981 tagaaatatc ataggaattt ttttcatagt ctatctttta aaacgatcta aggcacataa
    11041 agaaggggga catttttggc tcttggtatt tcgtggagta gtaggcacgc tttcactata
    11101 tatgtttttc tataatgttt caaatattac actaggtgga gcttttgctt ttcaaaaaac
    11161 tgctcctatt tttattactt taatagcttt tgttgttttt aaagaaaata ttggcatcaa
    11221 aggctggata ggaattttaa tagcatttgg tggagtgctt ttaatcgctc aaccttgggc
    11281 tcataattta aatcattcag gctttgattt aaaaaattca gttataggta tcacgagtgg
    11341 atttttagcc gctttagctc ttacaagtgt aagagaactt agaaaatctt acactacaga
    11401 acaaattgcc ttttctttta tccttttagg aaccttaatg cctttaattt ctatgatcag
    11461 tgctgaattt tttgaaccac agcatcttga ttctttacat ttagatttca ttctagcacc
    11521 ttttgtgatg ccaagtctta cagcttggct tatcattgcc attatgggaa ctttaggcac
    11581 catttatcaa attcacgtca ctaaagctta tggtatcgct aaacaagcag gagtagttgc
    11641 tggagttagt tatcttgatg tggtatttag tatgatagtt gggataattt taggagataa
    11701 tttaccaagt actatggttt ttttaggtat aataggcatt atttttggtg gattaatttt
    11761 agttaagaac aaaggaaaaa aatgaaaaaa atgatactca ttgctggtcc ttgcgtgata
    11821 gaaagcaaag atttgatttt taaagttgct gaacagttaa aaaattttaa tgaaaatcca
    11881 aatatagaat tttatttcaa atcaagtttt gataaggcca atcgcacaag tattaattct
    11941 tttcgaggtc ctggtcttga agaaggatta aaaattttac aaagcgtaaa agatgaattt
    12001 ggtatgaaaa tcttaaccga tatacacgaa agcaatcaag cagcagccgt aagtgaagta
    12061 gctgatgtct tgcaaattcc tgctttttta tgtcgtcaaa ccgatttact tgtagccgca
    12121 gcaaaaacta aggcaaaagt taatatcaaa aaagggcaat ttttaaaccc aagcgatatc
    12181 aaatacagtg ttaaaaaagt tctacaaacc cgtggcatag aagatgaagg ctatgaagct
    12241 gctcaaaaaa atggtgtttt tgtagctgaa agaggagcta gctttggcta tggaaatcta
    12301 gtagtagata tgcgttcttt agttatcatg cgtgaatttg ctccagttat ttttgatgct
    12361 acccatagtg tacaaatgcc aggggctgca ggtggaagta gcggggggaa aagcgaattt
    12421 gtagaacctt tagcaagagc ggcagcagcc gtaggcatag atggcttttt ctttgaaaca
    12481 catattaatc cttgcgaggc tttatgcgat ggacctaata tgcttaatct tacacgcctt
    12541 aaaaattgcg ttaatacatt actagaaata caaaatatca taaaggaaaa caaatgaata
    12601 ttattgaagg aaaattaaat ttagactcaa atacaaaaat tgctatcatt aatgcaagat
    12661 ttaatcatat catcacagat cgccttgtag aaggagcaaa agatgctttt ttaagacacg
    12721 gaggcaaaga ggaaaatcta agccttatac ttgttcctgg tgcttttgag cttccgtatg
    12781 cattaaaaaa agctatagaa agcaaaaaat ttgatgcaat ttgttgcgta ggtgcagtaa
    12841 ttcgtggctc aactccgcat tttgactatg tttcagcaga aaccaccaaa ggcatagcca
    12901 atgtgagttt aaatcataat atccctgtaa gctttggtgt tttaactaca gatacaatag
    12961 aacaagccat agaaagagct ggaagcaagg caggtaataa aggctttgaa gctatgacaa
    13021 ctgtaatcga gatgttaaat ttaagcaagg agctttaatg gcaacgcgtc atcaagttcg
    13081 ccaaagcgtc atctccttgc tttatgcttt tgaattaaat tctcaaaaca acgtttttgt
    13141 agatgaaatt ttagatgaaa aaaaaatacg caatgaacaa aaaaatttta ccttaaattt
    13201 atatcatgga attttagaca atttaaacaa tattgatgaa accttaaatt catttctaaa
    13261 tgataatcaa attacagctt taggacatgt agaaagagct atactaagac ttggggctta
    13321 tgagttactt tttaccgata ctcctagcgc cattgttatc aatgaggcta tagaacttgc
    13381 caaagaactt gctaatgaca attctccaaa atttataaat ggagttttag atgccttgat
    13441 aaaggctaaa aaatgaagct ttgtgtcgca cttgatcttt ctacaaaaga agaatgcttg
    13501 caacttgcta aagaattaaa aaatttagac atatggttaa aagtaggttt aagagcatat
    13561 ttaagagatg gttttaaatt catagaagaa cttaaaaaag ttgatgattt taaaatattt
    13621 cttgatctta aaattcatga tattcccaac actatggcag atgcttgcga agaaatatca
    13681 aaacttggtg ttgatatgat caatatccac gcaagtgctg gaaaaatagc tatgcaagaa
    13741 gttatgacac ggcttagcaa attttcaaaa agacctttag ttttagcagt ttctgctctt
    13801 acgagttttg atgaagaaaa tttctttagt atttatagac aaaaaatcga agaagctgta
    13861 attaattttt caaaaatatc ctatgaaaat ggacttgatg gtatggtatg ctctgttttt
    13921 gaaagtaaaa tcatcaaaga acacactcaa agaaatttcc taactctcac tccaggaatt
    13981 cgtccatttg gagagaaaaa tgatgatcaa aaacgcgtcg ctaatttaac aatggctaga
    14041 gaaaatttaa gcgattttat agtagttgga cgccctattt ataaagataa taaccctaga
    14101 aaaatttgcg aaaaaattct acaagaaatt taataatcat tatccttgtt atgttttaat
    14161 aataaaaatt tttaacaagg aaaaattatg attataaccc ctgagaattt atataaaaaa
    14221 agaagagatt ttttaaaact tggagcaggt gctttaataa gttcaagcgt gcttgcttct
    14281 aaattatctg ctttaaattt cacaagcgat actaatccaa acaaacttga aatcagcgat
    14341 gaagaacttg ctacaaatta tgtcaatttt tatgaatttt caacagataa aaaaaaggct
    14401 gtatcattgg cacaaaattt caatactcaa aattggaaaa tcgatatcag tggagaaata
    14461 gaaaaacctt taactttaag catggaagat attttaaaat tctcactaga agaaagaatt
    14521 tatcgttttc gctgtgttga aacttggtct atggtggtac cttgggtagg ctttgaattg
    14581 cgtcgtttga ttgaaatggc aaaacctaca agcgaggcaa aatttgttaa attcaccact
    14641 cttttagata agagccaatt tcccgatcaa gacgctttat ttccaactat agactatcct
    14701 tatgtagaag gacttcgcat ggatgaagct atgcatcctc ttaccttgct tgcagtagga
    14761 atgtataaaa aagccttaaa gcctcaaaat ggtgctccaa tacgccttgt tgttccttgg
    14821 aaatatggct ttaaaagtat taaatccata gttaaaatag aatttaccaa agaacagcct
    14881 aaatccactt gggaaagtta cgctccaagt gaatatggtt tttatgctaa tgtcaatcct
    14941 aatgtttctc atcctagatg gtctcaagct aacgagaggg ctttaggaga cttctttacc
    15001 aaacctactt taatgtttaa tggctatgaa aaagaagtgg caagtttata taaaaacatg
    15061 gacttgaaag tgaattttta atgcggacaa aatactttaa atttcttgct tattttagct
    15121 ttatcataag tttaatatat ggcttttatc atatcataaa agcctttgat tttgtaaaag
    15181 aagcctatat ttacaccgga atatttgctt taatcttttt aaatttaagt cttttatttt
    15241 ctttacttaa atttaaaaaa acaaaaaatt atcctaaaat tttagg
//
LOCUS       DAZAND010000035        15246 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.035, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000035 DAZAND010000000
VERSION     DAZAND010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15246
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.035"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..551
                     /locus_tag="ACHDOB_000843"
     CDS             <1..551
                     /locus_tag="ACHDOB_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HFN3325773.1"
                     /translation="EDIVMISKLAKENDFKFWFSNETNLSLQIVAPLHFNIAIILSSL
                     TNLNLIFMNFFELFDDKIYLRFEYDNIISDEQKLKLCELLNSNLSGFNLKKIKKPIIK
                     KDELKLDLNYSKMYAKLGLNTKDQQGLMAYLMNVFNELELVLCAAKIQTIRQRTRNIF
                     IFQKNEKLEHSEQKLVNLLISE"
     gene            556..2352
                     /gene="glmS"
                     /locus_tag="ACHDOB_000844"
     CDS             556..2352
                     /gene="glmS"
                     /locus_tag="ACHDOB_000844"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:1901137 - carbohydrate derivative
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HFN3325774.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDLNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDVLKSLSFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MIITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2487..3878
                     /gene="fumC"
                     /locus_tag="ACHDOB_000845"
     CDS             2487..3878
                     /gene="fumC"
                     /locus_tag="ACHDOB_000845"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045239 - tricarboxylic acid cycle
                     heteromeric enzyme complex [Evidence IEA];
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HFN3325775.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVGEEDFN
                     KFVDPTKMIGPKA"
     gene            complement(3908..4951)
                     /gene="amaA"
                     /locus_tag="ACHDOB_000846"
     CDS             complement(3908..4951)
                     /gene="amaA"
                     /locus_tag="ACHDOB_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HFN3325776.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITM
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(4955..5962)
                     /gene="ruvB"
                     /locus_tag="ACHDOB_000847"
     CDS             complement(4955..5962)
                     /gene="ruvB"
                     /locus_tag="ACHDOB_000847"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HFN3325777.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            6053..6463
                     /locus_tag="ACHDOB_000848"
     CDS             6053..6463
                     /locus_tag="ACHDOB_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HFN3325778.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            6464..6821
                     /gene="ssrA"
                     /locus_tag="ACHDOB_000849"
     tmRNA           6464..6821
                     /gene="ssrA"
                     /locus_tag="ACHDOB_000849"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            7027..9300
                     /locus_tag="ACHDOB_000850"
     CDS             7027..9300
                     /locus_tag="ACHDOB_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002821824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HFN3325779.1"
                     /translation="MKKNASSKILLSLGVATLLYSSAFAQEINLTQSSDVGNYFEENG
                     KDINLKNPDKYKGQDLNIKMGVWDLPNDDYDSADYRLNIDIGKNNTLSFTHNNGQNPA
                     YVTNLNATAKEVKTTDIVLQAFAPLVINGNLTMTSSGAGTITEDEKKGSGIILYNGAV
                     EGKSANGSLTINGNFTADKTLFATYGNFVKVNGTANLTNSNFGLMKRSYTDLEANNVV
                     MVQAKDFNENILKANNNAGALLLKFASDYISTDVQGKDPLEAGTIIDISDEDKYGDGE
                     KGLVDYKLSVQNCGGNKCLVINGGATAAAKDKLVQLQVDIDAIDKLLKNEFDSSQDEE
                     WTKAKEALEKQKTELEQLKQEAEKNGGKIDDEKYIDLVNKNSNLNLSANDKASILALR
                     SITEQLGSIGADLASREGVKLALQIKKDTDNTGKSVSNLNSASSAVNTTMNISNDVSI
                     GSRVAMLNNPFGTYASKMNGLKFAALDSDMRPSYVNEYTNSVWANAFGGANIIDGDSG
                     AMYGATVGVDKQANDDVLWGTYFTYANAKIKDNNLEQKSDNFQLGMYSTINIAPQWEL
                     NLKAYAQVSPTKQDNVQVDGAYNSDYTSKFLGLSANAGRVFDLSDNTLFIKPFAGVNY
                     YFSYTPSHTENGAIAKDIDSMKNNSVSVEVGAEFRKYMNENSYIFVTPKIEQFVINSG
                     DDYTANLAVNNAFFTSVEANNKKKTYGQIIVGGNVDFTNQLSMNLGFGAKQILAGKVD
                     NKNETYLSGQVGLKYKF"
     gene            complement(9442..11550)
                     /gene="ppk"
                     /locus_tag="ACHDOB_000851"
     CDS             complement(9442..11550)
                     /gene="ppk"
                     /locus_tag="ACHDOB_000851"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HFN3325780.1"
                     /translation="MQLKKEKLMQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKL
                     KFIAIYCTNLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLE
                     RYFNEITSELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLN
                     NLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPG
                     YKLLASAAFRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVE
                     FLNTHMKIFHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFD
                     AVEKEDILIIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASD
                     GKQVTVMVELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLK
                     FYMHLSTGNYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPN
                     QIKEKVLEMIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCL
                     KPDEEYSKNIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIY
                     DERSKAKLAQFLRLQLSDNVLAYELKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTL
                     KKDTDQSRATHLASKLFKEN"
     gene            11713..12228
                     /gene="nrfH"
                     /locus_tag="ACHDOB_000852"
     CDS             11713..12228
                     /gene="nrfH"
                     /locus_tag="ACHDOB_000852"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HFN3325781.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            12243..14075
                     /gene="nrfA"
                     /locus_tag="ACHDOB_000853"
     CDS             12243..14075
                     /gene="nrfA"
                     /locus_tag="ACHDOB_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0042279 - nitrite reductase (cytochrome,
                     ammonia-forming) activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HFN3325782.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQIDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGSHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADTKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            14211..14765
                     /locus_tag="ACHDOB_000854"
     CDS             14211..14765
                     /locus_tag="ACHDOB_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325783.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            14829..14918
                     /locus_tag="ACHDOB_000855"
     tRNA            14829..14918
                     /locus_tag="ACHDOB_000855"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14863..14865,aa:Ser,seq:gct)
     gene            complement(15127..>15246)
                     /locus_tag="ACHDOB_000856"
     CDS             complement(15127..>15246)
                     /locus_tag="ACHDOB_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HFN3325784.1"
                     /translation="FDNENIRDLIFKGYIIPYLIDKSKNEIVILGIYKSNLWD"
BASE COUNT         5296 a         2166 c         2701 g         5083 t
ORIGIN      
        1 ttgaagatat tgttatgatt tctaaattag ccaaagaaaa tgattttaaa ttttggttta
       61 gcaatgaaac aaatcttagt ttgcaaattg ttgcaccact tcattttaat attgccatta
      121 ttttaagttc tttaacaaat ttaaatctta ttttcatgaa tttttttgaa ctttttgatg
      181 ataaaattta tttaagattt gaatatgata atattattag tgatgagcaa aaactaaaac
      241 tttgcgagct tttaaattca aatctttctg gttttaattt gaaaaaaatt aaaaagccaa
      301 tcattaaaaa agatgagtta aaattagact taaattattc taaaatgtat gccaaattag
      361 gtcttaatac taaagatcag caaggtttaa tggcgtattt gatgaatgtt tttaatgaac
      421 ttgaacttgt tttatgtgca gcaaaaattc aaaccataag acaaaggacg cgtaatattt
      481 ttatttttca aaagaatgaa aaattagaac atagcgagca aaagttagtt aatttattaa
      541 taagtgagta aaaaaatgtg tggaatcgta ggctatatag gaaataatga aaaaaaacaa
      601 attatactaa atggacttaa agaattagaa tatcgtggct atgatagtgc gggtatggca
      661 gtgatgcaag aaggagagct tagttttttt aaagctgtag gaaaacttga aaatttggcg
      721 aataaatgca cggattttga aagtcaaggt tatggttttg ctataggtca tacaagatgg
      781 gcaactcatg gtaagcctac tgaaatcaac gcacatcctc atttaggaca gtattcttgt
      841 gtgattcaca atggtattat agaaaattat aaagaaatca aagataaact tgaaaaagaa
      901 ggcgtgagtt ttttaagtca aacggatact gaagttattg tccagctttt tgaattttat
      961 gcaagaaatt tgggagtttt tgaagcttgg caaaaaacca tcaaagaact tcgcggtgct
     1021 tttgctactt tgttagtaac aaaaaaagat ctcaatcatg tgtattttgc aaaaaatgct
     1081 gcccctttga ttatcggtaa aaatgcaaat aaagaatggt atttttcttc aggtgatgca
     1141 cctttgatag gaagttgtga tgaggtaatg tatcttgaag atttaagctt gggatacgcg
     1201 agtaaagatg agcttgtcgt ttatgaaaat gatgttttaa aatcactttc tttttctaag
     1261 ctttcaggcg ataaggctta tgcaaaaaaa gacggctttc gtttttttat ggaaaaagaa
     1321 atttatgaac aaagtcgtgt gatgagtgaa gtgttaatgg gacgtattca aggcgatgaa
     1381 gtcgtttttg atgagctaaa taatgaagat ttaagtcaag tagatgaaat cacgctttgt
     1441 gcttgtggaa caagctatca tgctgcaatg gcaagtgctt atttgtttga aagaattgct
     1501 aaagttaaag ctaaagtaga aattgcaagt gaatttcgct accgtgaagc aattataaaa
     1561 aaagattctt tatttatcgt tatttctcaa agtggagaaa cagcagacac tttagaggct
     1621 ttaaagattg caaaagagca gggcgctaag acttttgcaa tttgtaatgt ggataattct
     1681 aatatagtgc gtttagcaca cctaagtctt ttaactcgtg cgggtataga aaaaggagtt
     1741 gcttcaacta aagcttttgc cactcaggtt ttaacacttt ggatgcttgc tatttttatg
     1801 gcacaaaaaa gaaatttaaa tgtttctgct gaaattaaag cacttttgca tactccaaat
     1861 tgcgtgagtg taaaacaggc tttacatgaa aaaattcatc gtttatctaa gcgttattta
     1921 gatggacatg gctttttctt tataggcaga gatgtgtttt atcctttggc tttagaagga
     1981 gctttgaaac ttaaagaatt atcttatctt cacgctgagg gttatcctgc aggagagatg
     2041 aaacatggcc ctattgcttt ggctgattct aagctttata ctatagcttt aatgccaaag
     2101 cacatgcttt atgaaaaaac aaaatcaaat gttgaagagc ttattgctag ggattctaca
     2161 gtgcttagca tttcaccttt agaatttgat ttaagtgatg attttataaa aaccaatgag
     2221 caagatcatt atatgtgtga attttttgaa atgatgatca ttactcaact tttggcgatg
     2281 gaaatttcca taagacttgg taatgatgtg gatatgccaa gaaatttggc taaaagcgta
     2341 acagtcgaat aatccgtgca gtttaaataa actgcacata actttcaaat acttcaaaaa
     2401 aatataaata aattttaaat tataagctaa ctttatgctt atttttgttt aaataattct
     2461 aacaatattt ctagaaagga aacactatgg aatatagagt tgaacacgat actatgggtg
     2521 aagttaaggt cccaaatgac aaatattggg gagctcaaac tgaaagaagt tttgaaaatt
     2581 tcaaaatcgg ttgtgagaaa atgccaaagg ttttaatcta tgcttttgca aatcttaaaa
     2641 aatctttagc tttagtcaat aacaaacttg gcaaacttga tgatgctaag aaaaatgcta
     2701 tagttcaagc ttgcgatgag attatcgcag gtaaatttga tgataatttt ccacttgcga
     2761 tttggcaaac aggttcaggc acacaaagta atatgaatat gaatgaagtt attgcaaatc
     2821 gtgccactga aatcatgggc ggagattttc gcaaagaaaa gcttgtacat ccaaatgatc
     2881 atgttaatat gagtcaaagt tcaaatgata cttttccaac tgctatgagt atcgttgcgg
     2941 ttgagcaagt agagaaaaag cttatccctg cgcttgatga gcttattgca acttttgaaa
     3001 aaaaagtaaa agaatttgat ggtattatca agataggacg cacgcattta caagatgcta
     3061 cgccacttac tctagcacaa gaatttagtg gatatctttc tatgcttttg cattcaaaag
     3121 agcaaatcat cgcttcttta ccaactttaa gagaacttgc cataggagga actgcagtag
     3181 gaacagggct taatgcacat ccagaattaa gccaaaaagt aagtgaagag ctaactcaac
     3241 ttataggtac gaaatttgtt tcaagtccaa ataaatttca tgctttaaca agtcatgatg
     3301 cgattaattt tactcatgga gctatgaaag gtttggctgc aaatttaatg aaaattgcaa
     3361 atgatataag atggttagct tcaggcccaa gatgtggtct tggtgagctt atcatccctg
     3421 aaaatgagcc aggaagttcg attatgccag gtaaggtaaa tcctacccag tgcgaagctg
     3481 ttactatggt tgctgtacaa gtgatgggaa atgatgcagc tatcggattt gcagcaagtc
     3541 aaggaaattt tgaacttaat gtgtttaagc ctgtgattat ttataatttc ttgcaaagtc
     3601 ttgatttgtt ggctgattct atgcattcat tcaatatcca ttgtgctgta ggtatagaac
     3661 caaatcgtgc aaaaatcgat cataatcttc ataattcttt aatgctagtt actgctctaa
     3721 atccacacat aggttatgaa aacgctgcta aagtagccaa aaatgctcat aaaaaaggta
     3781 tttctttaaa agaaagcgca atggagcttg gtttggttgg cgaagaagat ttcaataaat
     3841 ttgttgatcc tactaaaatg ataggcccaa aagcctagaa cataaaactt gcctttttta
     3901 aggcaagtta aattaaattc ttatctttta aaatcacata cattcttaaa gttgatacaa
     3961 aaaaggttaa aatcgcagga cctagtataa taccccaaaa accaaaggtt gaaattcctg
     4021 ctatcatagc caagaaaatt aaaagttcgt tgattttggt aggggttttt acaagttttt
     4081 tgttgatcca tttgataatt aaaggtttga ttaaagtatc tgctataaaa gaaattacaa
     4141 ttacagaata aataaaaata acaagagctg agttaagatt gtttgaggca aattcataaa
     4201 gacttacagg cacataaatt aaagctcctc ctatagcagg tatgagagaa cttacagcaa
     4261 aaattactcc cattaaaatt ccatcataac cataaaacat tgtgattaaa ccaaaaagtg
     4321 caccttgaaa tattgctaca attaccatag agtaaagcac aacagccata acattaccca
     4381 cttcgcttaa aacatcatcg agttcttttt tatcaatggg aatgatggat ttaagataga
     4441 taacaagttc tgttccatat agatttgcaa agaaataaaa cacacaaatt aaaaccatat
     4501 ctataagaaa tttagctcct gattttgtaa aacttgaagc ataacttaga atttgtttag
     4561 aaatgctatt taaatctata gaagctaaaa attctttgat tttaggttct aaaaaattaa
     4621 agctttcagg caaagtaaat tgatagtttt tgacataatc aagtgtttgt gtgactaaat
     4681 taatatcaaa attttttaaa gctttggcaa gttctatcat agcataaaca aaaggtgcaa
     4741 agaaaagcaa aaccatacaa gttgttgtaa gaatggaagc taaaaattta tgccctttag
     4801 taagatttaa aaatttcgca ttgatatttg aggtagctac cgccattaaa ctagctatga
     4861 taattacaag taaaaaacct ttaaaaaggt aaagcaaaag aaataaaatg actaaaataa
     4921 agcttataag aaagaatttt ccattttgca aaatttactc ctcaaataaa gttttttcat
     4981 agtttagttt taaagcacta tagctttttg cactcgctat acgccctttt gcagtgcgtt
     5041 ctatatagcc attagctaat aaataaggct cgattacatc ttctatggta ttttcatctt
     5101 cgcttaaagc cgcagcaata cttgcaagtc cgataggttt ttgcttagca gcggttaaaa
     5161 gttcaagata tcttaaatcc atcgcatcaa aaccaagctc attaactcct aaagaattta
     5221 aggcctcatt agctcttttt tctgtgataa tctcttcatc attaacatca gcaaaatctc
     5281 taactctttt taaaagcctt agagctattc taggagttga acgacttctt ttagcgatct
     5341 caagtgcggc tttttcttca caagttttat taagttttaa agctgctttt tgcaagatta
     5401 gggcaagttc gctatctttg taaaattcta atctaaattg cataccaaaa cgatcacgta
     5461 aaggattgct aagcatacct gcacgcgttg tagcccctat aagagtaaat tttggtaaat
     5521 cgatttttat agtttgagca gctgggccac tacctataat gatatcaagg cggtaatcct
     5581 ccattgcagg gtaaagcact tcttcgatag cagggcttaa gcggtgaatt tcatcgataa
     5641 aaagtatatc tccttcgcta agattggtta aaatggctgc taaatctccg cttttttcta
     5701 tcataggagc ggcggttgtt ttgatatttg cacccatttc ataggagatg atattagcta
     5761 gtgttgtttt tccaagtcct gcaggaccgc taaaaagtat atgatctaaa cattcattgc
     5821 gttttttagc tgcagctata aagacattta aatttttttt aatgctttct tgacctatat
     5881 aaccatcaaa atttgaagga cgcaacgaag tttcgtaagt ttcatcaaag gagtattttt
     5941 ctatttctac tattctatcc atatctttgc ttatattttg gaaaaattaa aataagattt
     6001 tagctaaaat ttgctagaat ttacattaaa ctttaatgat tatggtttaa aaatgggaat
     6061 tttaacaaaa ttagaattag attatgaaat tgacgatata gaaaaatttt tgcaattttt
     6121 tagaaccatg tgcgataggt ttgaaccttt aatcatcaag cttggaagcg atagtgtgcg
     6181 ttataaagaa gccataaaag agcttgaaac tttagcacac aataccgctt gggcagcaag
     6241 acgcttaaat cttgaagaag tgactgattt ttgtgtattt tgtgaagaga tgatggcgca
     6301 agcaaatcgc tttaatgggc ctgctagtga tgaatttacg gattggatgc ttttgatgag
     6361 tgatcaattt gaaaaatatt gtcgttcata tgaaaatgat gattctgttt tagcggtttt
     6421 taatccttta attgttaatg ttccaaatat tatttctaaa taagggagcg acttggcttc
     6481 gacaggagta agtctgctta gatggcatgt cgctttgggc aaagcgtaaa aagcccaaat
     6541 aaaattaaac gcaaacaacg ttaaattcgc tcctgcttac gctaaagctg cgtaagttca
     6601 gttgagcctg aatttaagtc atactatcta gcttaatttt cggtcatttt tgatagtgta
     6661 gccttgcgtt tgacaagcgt tgaggtgaaa taaggtctta gccttgcttt tgagttttgg
     6721 aagatgagcg aagtagggtg aagtagtcat ctttgctaag catgtagagg tctttgtggg
     6781 attatttttg gacaggggtt cgattcccct cgcttccacc atcacgctaa ttttaagtaa
     6841 atcataagtt tatttcaaat ttttagaatt ttttatatga agttaagaat gatttattac
     6901 ccttaaaatt ttgatatatt gggttttata atttttcatt aaaaatttat agttttattt
     6961 ttaagcttat ttttaggggg ggggtataat tattccttca gtttaaattt attgaaggag
     7021 aaacttatga agaaaaatgc ttcgagcaag atattgctaa gcttaggtgt agcaactttg
     7081 ctttattcga gtgcttttgc acaagaaatc aatcttacac aatcttcaga tgtgggaaat
     7141 tattttgaag aaaatggtaa ggatatcaat cttaaaaatc ctgataagta caaagggcaa
     7201 gatttgaata tcaaaatggg tgtttgggat ttaccaaacg atgattatga tagcgctgat
     7261 tatcgattga acattgatat cggtaaaaac aatactttaa gctttacaca caataatggc
     7321 caaaatcctg cttatgtaac aaatctaaac gctactgcta aagaggttaa aacaacagat
     7381 atagttttac aagcttttgc acctttggtg attaatggaa atttaactat gactagctca
     7441 ggagctggaa ccattaccga ggatgaaaaa aaaggttcag gtataattct ttataatgga
     7501 gcagttgaag gaaaaagtgc taatggtagc ttaactataa atggaaattt tactgccgat
     7561 aaaacccttt ttgctactta tggaaatttt gttaaggtaa atggaactgc aaatcttaca
     7621 aattcaaatt ttggacttat gaagcgctct tatacagact tagaagcaaa taatgtagta
     7681 atggttcaag ctaaagattt caatgaaaac attttaaaag caaataataa cgcaggtgca
     7741 ttacttttaa aattcgcaag tgattatatc tcaaccgatg ttcaaggcaa agatcctttg
     7801 gaagcaggaa ctataataga tattagcgat gaagataaat acggcgatgg agaaaaaggc
     7861 ttagtagatt ataaacttag tgttcaaaac tgcggtggca ataaatgctt agtgattaat
     7921 ggaggtgcta ctgcagcggc taaagataag ctagttcaac ttcaagtaga tatagatgct
     7981 atcgataaat tgcttaaaaa tgaatttgat tctagtcaag atgaagaatg gacaaaagcc
     8041 aaagaagccc ttgaaaaaca aaaaactgaa cttgaacaac tcaaacaaga agctgagaaa
     8101 aacggtggta aaatcgatga tgaaaaatac attgatttag taaataaaaa ttcaaattta
     8161 aatcttagtg ctaatgataa agcttctatc ctagcacttc gttctattac agaacaatta
     8221 ggaagtatag gagcagattt agcaagtaga gaaggtgtaa aactagccct acaaatcaaa
     8281 aaagacacag acaatacagg taaatctgta tctaatctca attcagcttc tagtgcagtg
     8341 aataccacta tgaatatttc taatgatgtt tctataggtt ctcgtgtagc aatgctaaac
     8401 aatccttttg gaacttatgc ttctaaaatg aatggtctta aatttgctgc tttagatagt
     8461 gatatgagac caagctatgt aaatgaatat accaatagtg tttgggctaa tgcttttggt
     8521 ggtgctaata ttatcgatgg agatagtggt gcaatgtatg gtgctaccgt gggagtagat
     8581 aaacaagcta atgatgatgt tttatggggt acttatttta cttatgcaaa tgctaaaatc
     8641 aaagacaata atctagaaca aaaaagcgat aacttccaat taggtatgta ttctactatc
     8701 aatatagctc cgcaatggga acttaatctt aaagcttatg ctcaagtttc tccaactaaa
     8761 caagacaatg ttcaagtaga tggtgcatat aactcagatt atacaagtaa attcttagga
     8821 cttagtgcta atgcaggtcg tgtatttgat cttagtgata atactttatt tattaaacct
     8881 tttgcgggag taaattatta ttttagttat actccatctc atacagaaaa tggtgctatt
     8941 gccaaagata ttgattctat gaaaaataat tctgtaagtg ttgaagtggg tgctgaattt
     9001 agaaaatata tgaatgaaaa ctcttatatt tttgtaactc caaaaataga acaatttgtt
     9061 atcaatagtg gtgatgatta cacagctaac ctagctgtaa ataatgcttt ctttactagt
     9121 gtagaagcta acaacaagaa aaaaacatac ggacaaatta tcgtaggggg taatgtagat
     9181 tttacaaatc aactcagtat gaatcttggc tttggtgcta aacaaatact agcaggtaaa
     9241 gtagataata aaaatgaaac ttacttaagt ggtcaagtag gacttaaata taaattttaa
     9301 tcttaaaaat catttctaaa tctttttata gtttagaaat gattgtttat ttctatggga
     9361 aatctcctag ggctttatct taaagccctt ttttataaca aacaagtaaa taagtcttta
     9421 gagtaaaaac cctaaaaact tttagttttc tttgaaaagt ttggaagcta agtgcgttgc
     9481 acgactttga tctgtatctt ttttaagtgt tttataaatt ttacttacat attcttctaa
     9541 ggtttgttga gaatctatga ttttttcaga agaaggaatt ttttcatact ctccattgtt
     9601 tttaagctcg taagctaaaa cattatcact aagttgcaag cgtaaaaatt gagctaattt
     9661 agctttactt ctttcatcat atataggagt cataagttct aagcgacgct ctaaatttct
     9721 tggcatccaa tctgcactcg atataaaata atttggctca ctatgtttaa aataaaatac
     9781 tctagcatgt tctaagtatt ttcctatgat gcttctaacg cgtatgtttt tgctgtattc
     9841 ttcatcaggt tttaagcaac aaattccgcg tatgataaga tcgatttgca ctccttccat
     9901 acttgcttca taaagcgctt gtatgatatc actatccaca agagaattca ttttagctac
     9961 aatcacacct tcatttttct tgcttgtttc aatgcgtatc atttctaaaa ctttttcttt
    10021 gatttgattt gggctcattg aaagagtttg aaggcgacga tttttactaa agcccgataa
    10081 gatgtgaaaa aagcttgtcg tatctcttgc aaattctgct ttgcttgtaa aataactcac
    10141 atcagtatag attttagcac tgcttgcatt ataatttcct gtgcttaaat gcatataaaa
    10201 tttaagttta tctccttgtt tgcgtatgac ttgagaaacc ttagcgtgga ctttaaaacc
    10261 tgtaatgcca taaataacat gagctccggc attttctaaa gctttcgccc aatgaagatt
    10321 attttcttca tcaaagcgtg cttttaattc taccatcaca gttacttgtt ttccatcgct
    10381 tgcagcatca attaaagctt gaactatatt ggaatttttt tcaactctat aaagtgtcat
    10441 tcttatggaa attacttcag gatctttgct tgcttctttg ataaatttat aaactggatc
    10501 aaaactttca aaaggttgta tgatgagtat atcttctttt tctacagcat caaaaataga
    10561 taaattctca tcaaaaggtg gtaaagtttt aggtgtgtaa agtgggctta aaagatgcgt
    10621 aaaggtttta tttcctgcga tttgccaaag gctagggaga ttgagtaaaa tagaatattc
    10681 ataaacatct ttatgaaaaa ttttcatgtg agtattaaga aattctacga tttgttcatc
    10741 tgcatctttt tgaatttgta atcttacaaa agctcctttt ctgcgaagtt ttaagccttg
    10801 ttctaaaatc atcataaaat catcagcttc ttcctcttct attaccatat ctgcatttct
    10861 agtcactcta aatgctgctg aagctaagag tttatagcct ggaaaaattt cttctgcgtg
    10921 ttgatggact atactttcta taggaacata aatatttgca cttacttcat aaaaacgagg
    10981 taaaactctt ggaattctaa tcattccaaa ttttacaagt tcaggatgcg ctttatcgca
    11041 aattttaacc gctagtgaaa aagataagtt gtttaaatgc ggaaaagggt gagtagcatc
    11101 aacagctatt ggaacaataa caggaaaaat attggagaaa aaatactcat cacatttttg
    11161 ttttaaattt tcatctaaat tttcataatg ttttatgaaa agattttctt tttctaattc
    11221 acttgtgatt tcattaaaat aacgctccaa aagctctttt tcttgatgta agtatttgcg
    11281 tatggctttt aattgttgta acggggtcat ttcatcgcta ctgcttgcat taactccagc
    11341 tgaaaaaagt tgttttaagc ctgcgacgcg tatcatataa aattcatcta aattggtgca
    11401 atatatagct ataaatttta atttttctaa caaaggtaaa tttttagaac attggtctaa
    11461 aacacgagaa ttaaagcgaa gccaagaaag ttcgcgattg ataaacatat caggacttgt
    11521 ttgcattaat ttttcctttt ttagttgtat tttatcattt attttgaaat tattgaataa
    11581 aagttttaaa tttttaggtt aattaagagt aaatatatct ttaaaattat attaaattca
    11641 tctatgttag aatcacaaaa tttatttctg ggaaattctg tgacattgtt gtttcattga
    11701 agattttaag aaatgataat tttaaggagg aaaattttga agaaaacttc gaatcttttt
    11761 actatttttc ttgttttgct ttttgttttc tttgcggttg gcttttatac cttttataac
    11821 gctaagggca catcttattt aagcaatgca agtgaatctt gtaataactg ccatattatg
    11881 aatgaagttt ataacgaata catggcaggg ccgcactctc aaaaagtcaa aggcgaacca
    11941 agagcaactt gcgtggattg ccatttgcca cataattttg tagctaagtg gatagctaag
    12001 gctcaaagtg gtttagggca tgcttatgct tttactttta aacttgatga gttgcctaca
    12061 aatttgagtg cgactgaaaa aagcagaaaa atggtgcaag aaaactgcat acgctgtcat
    12121 gcagattttg ctcaaacagc tatcaatgct acaacaaatc cacatgcaga caagtcatta
    12181 aattgtgctt cttgtcataa agatgttgga cataaacacg gaatttaata aggagaagat
    12241 gaatgaaaaa aaatatttta cgcttaggta ttgtcgtttt ggttttactt atagcgggag
    12301 ttttatggct aaataatgat atcaatcaaa aaaaagaaga tgaagcaaat aaaaatgcca
    12361 ttgcagcaaa tgctgatttt tctttgctta gcgatgatga tccaaatttt gaaaaatggg
    12421 gtaaggtttt tccagagcaa ctaaaaatgt atttaacggt tgaaaaagaa gagcctaagg
    12481 ctactgaatt tggtggtaat ttagcttatt caaaattgat tcgctttcct caattaacca
    12541 tactttgggc aggatatcct tttagccttg atttcaatga agaaagaggg catttttggg
    12601 ttcaaataga tcaaatgaaa acagcaagaa acaacaaaga ttttcttaat gcccatggac
    12661 ttgctgcttt taaaggtcaa cccgcagctt gtatgaattg tcatagtgga tggactccat
    12721 ggcttataaa aaatgttgct aaaggagatt ttactgcttt taactctaca aattattgga
    12781 ctatgattaa aaatatccca gctgttgatg gtatagtaga aaattcacct gaacatgcag
    12841 gctcacatgg tggtaaaaga atgggtgtaa cttgtgcaga ttgtcacaat ccaaatgata
    12901 tgagtttaag acttactcgt ccagcagcta ttaatgcttt agtttctaga ggatatgaaa
    12961 aagatccagt acaaggcgta aaagctacaa gagaagaaat gagaacttta gtttgctctc
    13021 aatgccatgt tgaatactat tttaaaccaa caggggaaaa agtaaaagta atgggtgaaa
    13081 ctattgtaga tgatagttct aaaaaatggt ggaatggaac tcagaaaaat tatgatgagt
    13141 atgaattttg gagagatggc aataaagcta aagagattga aaccgatggt atagttttaa
    13201 cttttccttg gagtgaatgg aaaaaaggac aaccatttag aattgaaatg ctagatgatt
    13261 attatgataa agttcgtgga gtatttggag ctgattttac tcataaatta acaggagcgc
    13321 aaattattaa aattcaacat ccagaaagtg aactttatag tggcggtgtg catgctgcaa
    13381 atggggtaag ttgcgtggat tgtcatatgc cttatgttag agaaggagct aaaaaggtta
    13441 ctcaacacaa tatcacttct cctttaagag atattaactc tgcttgtaag tcttgtcata
    13501 aacaaagcga agattattta aaagctcaag tgcttgacat acaaaatagc gttgcgcatg
    13561 atcaaagaac tgcagagtac gcaattgtta gtttgattat ggatactaaa aaactacgcg
    13621 atgagctagg taatatggaa aaattccaaa gcgatggaaa agctgatacg aaaaaaatta
    13681 gtgaagagct aaaagaagtt ttagaacttc atcgtaaagc tcaaatgaga gcggattttg
    13741 ttaatgctga aaactcaact ggtttccata atcctcgcga agcttcaaga atgttattgc
    13801 aagctgttga tatggcaaga atgggacaaa ctaaacttgt agaaattgca gcggcaaatg
    13861 gaattaaaga ttttaaaact tcaaatttag gttttgaaga tattcaaaaa tttaatccag
    13921 gagagcttta ttataaagta gatgttaata atcataaagc tggagagcgt tactatgcag
    13981 atgaaaaaga tgttaatggc aatcctccaa aagaactttt agagcatgat aaagagcttg
    14041 ctccttataa ttatcaagtg attgataaaa aataattctt aagccctata atcatagggc
    14101 tttttctttt ctttgtttta aaaaatataa actttttatt taaaattcac ttttgcttca
    14161 ctttgttttg tcaaaatatc acaaattttg ataatcaaaa aggagttaaa atgatcaata
    14221 aaaataaatt gtttagacag gttcatatct atcttagttt gttctttttg ccttgtgctt
    14281 tgctttttgc tttaacgggt atagcatata tttttggtat taatcaagat gtgggcttaa
    14341 aagttgagca atatcaattg tcaaaagtta tagaaagtgg taaagaaaga gaagctttaa
    14401 tagagtattt aaaaacaaat ggtttaaaag taccatctaa tacaaatata attaaaagca
    14461 aagataaagg tataacaata ggtggaactc attatagtgc taatataact caaaattcta
    14521 ctaatgaata caatattacc ttaaaaacaa gatctttgct tggagatatg attatgcttc
    14581 ataaagataa gggtgcttgg tatttttctg tgcttagcgt aggttttggt attactttat
    14641 ttatgcttta tatttcaggg cttatgatta ctttgtttgc aaataaaaaa gatagaagta
    14701 aacaatttgc agttcttgga gtaggggttg ttgtaacttt gcttttggct tatcttagcc
    14761 tttgattttt cctagctttt taagctaggt attatttatt tttttgtata atcacacttt
    14821 actttattgg acagatgggt gagcggctga aaccacaccc ctgctaaggg tgcagatctt
    14881 aacgggtctc gagggttcaa atccctctct gtccgccact aaaactttct tgaaaattcc
    14941 aagtatttat atatcaacat tatatatttg aaaaaaaaga ataatctaga actataataa
    15001 ataaatatta ttctaaaatt ggaaaataat ccattagaaa ataagatatt ttggaattat
    15061 ttaagaaatt agatgaaaaa gaatgctaat atggaagtaa gaattctaaa aaaataaaat
    15121 ataaaatcaa tcccaaagat tacttttata tatgcctaaa atcacaattt catttttact
    15181 tttatcgata agataaggga taatataacc tttaaaaatc aaatctctta tattttcatt
    15241 atcaaa
//
LOCUS       DAZAND010000036        14994 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.036, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000036 DAZAND010000000
VERSION     DAZAND010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14994
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.036"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            5..1411
                     /gene="aspA"
                     /locus_tag="ACHDOB_000857"
     CDS             5..1411
                     /gene="aspA"
                     /locus_tag="ACHDOB_000857"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008797 - aspartate ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HFN3325785.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVAAYSLFNSIVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1428..2765
                     /gene="dcuA"
                     /locus_tag="ACHDOB_000858"
     CDS             1428..2765
                     /gene="dcuA"
                     /locus_tag="ACHDOB_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HFN3325786.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFIACMLTAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     ILHGEDKPGAKLSVGIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            2873..4234
                     /locus_tag="ACHDOB_000859"
     CDS             2873..4234
                     /locus_tag="ACHDOB_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325787.1"
                     /translation="MKIKVGLIFSGIVCLFLTACVNQVKQNTTFENALTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAAEESYKYDVDLENVGSKAA
                     KFVGTTLLNDTIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLLREVAIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVVVRSFAPYLPASVAI
                     MEK"
     gene            4244..4612
                     /locus_tag="ACHDOB_000860"
     CDS             4244..4612
                     /locus_tag="ACHDOB_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HFN3325788.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDLIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRAKDFRLEIKAKN"
     gene            4636..5259
                     /gene="lpoB"
                     /locus_tag="ACHDOB_000861"
     CDS             4636..5259
                     /gene="lpoB"
                     /locus_tag="ACHDOB_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HFN3325789.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5341..6678
                     /locus_tag="ACHDOB_000862"
     CDS             5341..6678
                     /locus_tag="ACHDOB_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6844 domain-containing protein"
                     /protein_id="HFN3325790.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNTTKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6688..7890
                     /locus_tag="ACHDOB_000863"
     CDS             6688..7890
                     /locus_tag="ACHDOB_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HFN3325791.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANEAALK
                     QIANRIAGDILNAIYPLKVASVENNEVVFSQSLNQGDVYECFALGKAIKDTYTKENIG
                     RVENKTGSIEITRTSPKLSYAKITEGGVKVGDICRPLIGSNSGNGYTIGRDANYQTEE
                     GGGVNLGF"
     gene            8049..8357
                     /gene="rplU"
                     /locus_tag="ACHDOB_000864"
     CDS             8049..8357
                     /gene="rplU"
                     /locus_tag="ACHDOB_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HFN3325792.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8368..8622
                     /gene="rpmA"
                     /locus_tag="ACHDOB_000865"
     CDS             8368..8622
                     /gene="rpmA"
                     /locus_tag="ACHDOB_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HFN3325793.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8731..9768
                     /gene="obgE"
                     /locus_tag="ACHDOB_000866"
     CDS             8731..9768
                     /gene="obgE"
                     /locus_tag="ACHDOB_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HFN3325794.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVNLGEEFAEQITLNINELENYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNK"
     gene            9891..10646
                     /gene="proB"
                     /locus_tag="ACHDOB_000867"
     CDS             9891..10646
                     /gene="proB"
                     /locus_tag="ACHDOB_000867"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HFN3325795.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10720..11637
                     /gene="fmt"
                     /locus_tag="ACHDOB_000868"
     CDS             10720..11637
                     /gene="fmt"
                     /locus_tag="ACHDOB_000868"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0071951 - conversion of methionyl-tRNA to
                     N-formyl-methionyl-tRNA [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HFN3325796.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDENIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAVLESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKIIPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNARMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11600..12253
                     /gene="birA"
                     /locus_tag="ACHDOB_000869"
     CDS             11600..12253
                     /gene="birA"
                     /locus_tag="ACHDOB_000869"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HFN3325797.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCEQIRNGKIDGNFAIYALEQTN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKELLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFSPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12250..13035
                     /locus_tag="ACHDOB_000870"
     CDS             12250..13035
                     /locus_tag="ACHDOB_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN3325798.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            13041..13877
                     /locus_tag="ACHDOB_000871"
     CDS             13041..13877
                     /locus_tag="ACHDOB_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HFN3325799.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KL"
     gene            13938..14363
                     /locus_tag="ACHDOB_000872"
     CDS             13938..14363
                     /locus_tag="ACHDOB_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FoF1 ATP synthase subunit B'"
                     /protein_id="HFN3325800.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLGVNDELEAIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAVQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            14374..14886
                     /locus_tag="ACHDOB_000873"
     CDS             14374..14886
                     /locus_tag="ACHDOB_000873"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HFN3325801.1"
                     /translation="MSKLFFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVAILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            14889..>14994
                     /locus_tag="ACHDOB_000874"
     CDS             14889..>14994
                     /locus_tag="ACHDOB_000874"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HFN3325802.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVL"
BASE COUNT         5538 a         1932 c         2750 g         4774 t
ORIGIN      
        1 caaaatggga acaagaaaag aacatgattt tattggggaa ttagaaatct ctgatgaggt
       61 ttattatgga gtgcaaactt ttagagctgt tgaaaatttt gatatttctc atgatagatt
      121 aaaagatttt cctcgctttg ttagagcttt ggctagagta aaaaaagctg cagctatggc
      181 aaatcatgaa ttaggtcttt tagataaaaa tatccaagat gcgattatta aagcgtgcga
      241 taaaatttta gaaggcgggt attatgatca atttgtagta gatatgatcc aaggaggtgc
      301 tggaacaagt acaaatatga atgctaatga agttatagcg aacataggac ttgaacttat
      361 gggtcataaa aaaggtgaat accaatatct tcatccaaat gatcatgtta atttaagtca
      421 aagtactaat gatgcttatc ctacagcttt acaccttgcc ttgcatgatt atttaagtga
      481 tttggcaaaa gctatggaac atctaaaaaa agcttatgag agaaaagctg aagaatttaa
      541 agatgttctt aaaatgggta gaacccaact gcaagatgct gtacctatga ctttaggtcg
      601 tgaatttaaa acttttgctg taatgatagg cgaagatata caaagagtat tagaagctag
      661 aaaattaatt ttagagatca atttgggtgg aactgctatt ggaacgggaa ttaattctca
      721 tcctgattat ccgaaggttg tagaaagaaa aataagagaa gtgacaggtt ttgaatatac
      781 tgtggctgag gatttgatcg aggcgactca agatacggga gcttatgtac aaatttcagg
      841 tgttttaaaa cgtgttgcaa caaaactttc taaagtatgt aatgacttaa gacttttaag
      901 cagtggtcca aaatgtggtc ttaatgagat taatcttcca aaaatgcaac caggtagttc
      961 tattatgcca ggtaaggtaa atcctgttat tcctgaagta gttaatcaag tttgttattt
     1021 tgttattgga gcagatgtaa ctgtaacttt tgcttgtgag ggtggacaat tacaacttaa
     1081 tgtttttgaa ccagttgcag cgtatagctt atttaattct attgtaatgc tagaaaaagc
     1141 aatgtatact ttagctgata aatgtataga tggtattact gcaaatgaaa aaatttgttc
     1201 agacttcgtc tataattcag taggtatagt aacagcttta aatccttata ttggttatga
     1261 aaattcagct tctatagcta aagaggcaat gaatactgga aaaagagtgg ctgatattgc
     1321 gcttgaaaga gggcttttaa gtaaagaaca aattgatgaa attttaactc catcaaatat
     1381 gctaaatcct cacatggaag ctaaaaaata gcattttagg atttaatatg gatataatga
     1441 taattttgca agtaatcgtc cttcttgggg cgatttttat cggtattcgc ctaggcggta
     1501 ttgctatagg ttatgctgga ggattaggtg tagttatact aggacttgtt ttaggtatga
     1561 aacctggtaa tattccttgg gatgttattt taattattgc tgcagctatt gcagcaattt
     1621 ctgctatgca acaagcaggt ggacttgatt atatggtaag ggtgacagaa aaaattttaa
     1681 gatcaagccc taaatttata aattatttag ctccagcttg tggatggttg cttacaatct
     1741 tagcaggaac aggaaatgca gtattttctt taatgcctgt tgtagttgat gttgcaaaat
     1801 ctcaaaatat aaaacctagt gttccacttt cattaatggt tgtttcttcg caaattggaa
     1861 tcactgcttc tcctgtgagt gcagctgtgg tttatatgag tggcgtttta gagccacttg
     1921 gatggaatta tccaacttta attggaattt ggatcagtac aacttttata gcttgtatgc
     1981 ttacagcttt tatagtgagt ttaatcactc ctatggattt aagcaaagat agcgtttatc
     2041 aagaacgctt aaaagcagga cttgttaaag atgcaggagc tattttacat ggtgaagata
     2101 aaccaggtgc taaactttca gtaggaattt tcttgatcac tgttttggca gttgtacttt
     2161 atgcaaccgc aatttcaagc aatattaaat ggattgatcc tgttgtggtt ccaagagatg
     2221 cagctattat gagcttttta cttactgcag caactttgat cacttggctt tgtaaagttg
     2281 aaccaggtaa aattcttgat accagcgtat ttaaaagtgg tatgactgct tgtgtttgtg
     2341 tttttggtgt agcatggctt ggaaatactt ttgttgcagg acacgaagct tctattaaag
     2401 aagtagcagg cgactgggtt aaacaaaccc ctgctatgtt agcagttgca tttttctttg
     2461 caagcatgct tttatattct caagcagcaa ccgcaaaggc cattgtacct gtaattatca
     2521 ctgctttagg aatttcagca gcaaatccgc atgattctta tatgcttgta gcttgttttg
     2581 cagcagtttc ggcacttttt gtgcttccaa cttatccaac cttactcggt gctgtgcaaa
     2641 tggatgatac aggaacgact agaattggta aatttatatt taatcactct ttctttatac
     2701 caggagtttt agctattgca attgctgtag cattaggctt tgtattagct cctatgctta
     2761 tttaaatcaa accctaggtt tttctctcct agggttaaaa ttttttcatt agtttttaag
     2821 tatatactac gctataatat tcatttttaa ttttctttaa gaaaggaatt taatgaagat
     2881 aaaagttggg ttgatttttt caggtattgt ttgccttttt ttaacagctt gtgttaatca
     2941 ggttaaacaa aatacaacat ttgaaaatgc tttaacacaa aaatattgtg gtgatgattt
     3001 tttcaatcaa aatttagaaa aaattaaaaa aaatgatgat gtcatttata caggattaaa
     3061 tgcaggtttg attgctagaa attgtggtga ttttaacaaa agtaatgtat tttttgatgc
     3121 tgcggaagaa tcttataaat atgatgtgga tttagaaaat gtaggctcta aagcagctaa
     3181 atttgttggt acaaccttgc ttaatgatac tatagttgat tatgatggtt ctttatatga
     3241 aagaattatg gttaatatat ataaagctct aaactatatg gaagaagatg attatgaaaa
     3301 tgcaagagtt gagtttaatc gtgctttaat gcgtcaagat aaggcaaaag aatattttgc
     3361 taaagaaatt gagaaaaatc gtgctgattt agataaggca aaagaagata aaaattatga
     3421 taaaaatatg aatgaaaact caaaagttat agaagcacaa tacgataact tgtttaaaga
     3481 gtttgataca acaaaaaatt tcataaatcc ttatgcgact tatcttgctt caatattttt
     3541 ctttatggat aaagattata gaaaagctgc agatttattg agagaagtag ctattattta
     3601 tccaaaaaat aaaactatca aaaaagaggc taaaattttt aaagaatatg ccacaaaaat
     3661 aaaagtcaaa aaagctaaaa aatatgtttt tgtagtttat gaaaatggat ttggtgtagt
     3721 taaggatgaa tttgctttaa ccttaccttt tatagtggat aaaaaaatta ttagcacaaa
     3781 tattgcttta caaaccttga aaaaaaggga agcttctttt gcaaatttaa atataaatgg
     3841 tcaaaataca aatgattttg tagatttaga caatattgtt gctactgaat ttaaaataaa
     3901 tatgcctgca atgattgcta aagccttagc tcaaactata attaaaacca ctttaaatgt
     3961 agctgttgca aataatgact ctacaggtgg atggctaagt cttgcaacag cagtagcaac
     4021 tgctgcaacc aacaaagctg atgtgcgttc ttggagaggt ttgccaaaaa gtattgccat
     4081 agcaacaata gaaaacgacg gaaatttaga aatcaaagat ccacaaggca atattttgtt
     4141 tcaaaaatca ttggataaaa ataaaaatgc tcttgttgta gtgcgttctt ttgctccgta
     4201 tttacctgca agtgttgcta tcatggaaaa ataaggctaa aagatgaaaa aaaatatttt
     4261 atttatttta atgtttttac ttagtgcttg tgcgccaagt tatcaaataa attcaaatca
     4321 aaatactgta attttaggtt caaatttacc aaaaagttta gtaaaacagt ttcaaaagcg
     4381 tataaatagc aatggttatt tagaatttga agtgatttta cgcagtactt ttgctaaaga
     4441 tttaatttat aaagtggatt ggttagataa agatggtttt gtgctaagag atgttttaaa
     4501 tgaggactat caagccctta gaattccagc aggacaagag gtgattcttc gtaaacttgc
     4561 atctgataca agagcgaagg attttagatt agaaattaaa gcaaaaaatt aatctcattt
     4621 taggaaggat aaatcatgaa aaaaacaaaa attttaggaa cagctcttat tggagctttg
     4681 ctttttagtg gttgtgcgca aacagcttat acagatggaa aggcaagtca agtgaaaaaa
     4741 ggcgatgctt taaccttggg tcttgataga caagattttg aaagtgcagc tgaaactatg
     4801 ataaatagta tgttaagcga tcctgctttt gcaaatatta aaccaggtac aagaaaggtt
     4861 attgctattg gtagggttgt gaatgatacc ccgcaaagaa tcgatactga aaaacttacc
     4921 gcaaaaatca cttctgcatt aagaaaatca ggtaaatttg ttctaacttc agcagttgct
     4981 gcaggcggag cacttgatag catgagtgaa gatgtaagag aattaagaga taatgatgag
     5041 tttaatcaaa aaaccatagc aaaaaaaggg acattggtat cgcctgattt ttctcttgcg
     5101 ggtaaaatta gacaagataa tgtaaaactt agcaatggta aaactcaagt agaatacttt
     5161 ttcttgttaa gacttactga tctaacatca ggtttagttt attgggaaga tgagcaaact
     5221 attgataaaa ccggttctag taaatcagtt acttggtaaa ataaaaatta atttatgaat
     5281 aaaattttta gctcaagtgt ttagcttgag ctttttttat gatttttaaa aggatatgaa
     5341 atgaaaaaaa tattatttat cggctcttta gttatggcaa gtttacttta tgcacaaggt
     5401 tcccagcctg tagaaattac acaacaagat ataaatactc aaaatgaaat gtctgatgca
     5461 agcactaagg atattacccc aaaatcaatt gaagattttt ttgaagaatt tgcggataat
     5521 ttcggtatag aatatggtat aaccaaagat ggaaaaactt tttatacagg aaaaagtact
     5581 gttgctgtaa atgatactga tccacaattt gcacaagctt tacaaaatgc ttatcaaaaa
     5641 gcaatgttaa atttacaaag cgaatttata agagatgctt ttggaagaat tgctacaagc
     5701 aagattcaaa attatgaagc agataattct actaatgcta aggaatttga tgaattgcca
     5761 aaaggtgata aggttgatca aattttaaat aaacttacac aattagctgg tgctcagctt
     5821 gataaggcat taaaagattt aggtatagat acaaattctt taagcgaaga cagaaaaaag
     5881 actttattaa agcaagaatt tcttaataaa accatgacaa atgccatagg ttctatgagt
     5941 ggacttgttc ctgtgcaaac tatagttaca caaagaagag gtgagtatga tgtaggtgtt
     6001 attgctgtta tttccaataa aactcgccaa ttagcaaaag atatggcact agcaagacag
     6061 agtgctatta agggtaaagg caaggcaata agtgagtatc tgccaaaaga tacaaaaggc
     6121 tttttaaatg aatatggaat tcgcttagtt tatgatgaaa atggtgcgcc tattatttta
     6181 agttatggaa actggggtta tgtagcagat cctagcaatg ctaaaaaaac aaatatttta
     6241 gaagatagag ccaaagaaac agcacttact atggctgatg ctgctattat agagtttatt
     6301 aatacaaatt taagtcttaa agatgaaaga acaactggtg atacttacga ggaaatcatc
     6361 aaacaaagta ttaatgttaa tgatagttcc actcaagaac aaactcaaaa cataacaaat
     6421 attattgata aagtaaatag taaaataaaa gcaagcgcaa gcggtaaaat tcgtggtatt
     6481 cgtactctta aaaaatggag ttatacaagt gaaaatggta ttgaacatgt aggagctgtg
     6541 agattttatt cttatgaaaa tttagctaac acaaatgagg ctttaaattc aaagtcaaat
     6601 acaacaaaaa atgaagctaa aaaatcttct agcatacaaa gaagctctaa tgttgtaaat
     6661 agcatggatg atttttaaag gtaaaagatg aaaataatta aaattctttt tttaggctta
     6721 tttttaagcc taagtcttaa tgctaaagtt ataaccacaa cttcaacaaa atcaagcaca
     6781 ggcgaaggca caggcttgac tagggaagat gcgataaaca atgccattat agaagctata
     6841 ggaaaaatga gcggagtaag catcaattct cttaagaaat ctaacactag tgtttcaact
     6901 gataattcag gttcaaacat acaagataat tacagcgagc aaatttcaaa agccaccaaa
     6961 ggtagagccg atacttatga aatcaatagt gttgaacaag atgcaaatgg taaatataca
     7021 gccaatgtaa cgatttttaa aaccacaaca acaaaaaagt atcaagctcc aggtttaagt
     7081 gcagataata gaagaagtat tactgttttt gattctactc cagatgctgc aaaaagaggt
     7141 ataggctcag ctttgcaaca aaaaatcatt tccgatttat tgcaaagtcg taaatttaat
     7201 gttttagacc gtgattctag tggctattat gaaatggaaa aagctttaat caaaagtggc
     7261 gacgcagcta gcgatgaagt ttataaactt aaaaatgtgt tagcaacaga ttatatttta
     7321 ttgttttcta tttcaggact tgaaggtaaa caaaaaacaa gcaatttaac aggaaaaagc
     7381 aaaactgaaa ttgaagttat cgtagattat cgtgtgcttt tatttgctac aagacaaatt
     7441 aaattttcta atactttaag tatgaaagtc aatcttaaag acaatagtct tagtgccaat
     7501 gaagctgcac tcaaacaaat tgcaaatcgt attgcaggag atattttaaa tgcaatttat
     7561 cctttgaaag ttgcaagcgt tgaaaacaat gaagtagtat tttctcaaag cttaaatcaa
     7621 ggtgatgttt atgaatgttt tgctcttggc aaggctataa aagatactta tacaaaagaa
     7681 aatataggaa gagtagaaaa caaaacagga agtattgaaa tcactcgcac aagccctaaa
     7741 ctttcttatg caaaaatcac agaaggtggt gtaaaagtgg gcgatatttg tagaccttta
     7801 attggtagca atagtggaaa tggctacact ataggtcgtg atgcaaatta tcaaaccgaa
     7861 gaaggtggcg gagtaaatct gggattttaa atttttagag tttgattttt ctcaaactct
     7921 aaatcctttc ttaaattcat caaaaattaa agaaaaattt tgtaaaatcg aaattttatt
     7981 aaaccactaa agcttttaaa tccgttattg cggtgcttta tggtactacc aatttataag
     8041 gaaaagcaat gtatgctatt atcaaacaca gcggaaagca atacaaagta agtgttggcg
     8101 atgagctaaa actagatcac tttgaagctg aaagcaaagc aagtattgaa gtaagcgaag
     8161 ttcttgctat caatgataaa gaattaaagg taggtgcgcc tttcgtagca ggtgcaaaag
     8221 ttgttttgga agtgatcaat cacggaaaag ataaaaaagt tgtgatttac aaaaaaagac
     8281 gcagaaaaga ttctaaactc aaacgcggtt ttagaagaca atttactcgc gttgtagtaa
     8341 aagatatcaa agcttaagga gtaaagaatg gcacacaaga aaggtcaagg ttcaactcaa
     8401 aataaccgcg attctatagg tcgtcgttta ggtgttaaaa aatttggtgg cgagtttgtt
     8461 agagctggaa atatcatcat ccgccaaaga ggaactgcaa ctcatgcagg taacaatgta
     8521 ggtatgggga aagatcatac tatctttgct ttgattgatg gttttgtaaa attcgaaaga
     8581 aaagataaag atagaaaaaa agtttctgta taccctgcat aagtttttag gacgcttttt
     8641 tagcgtcttg aaaactttaa atttataaat ttaacttctt tttatttgct caaatttagc
     8701 tttataaatt taaagtcaaa ggcaatttaa atgtttattg atagtgttaa aattacttta
     8761 gcttcaggcg atggtggtaa aggtgctgta agttttcgtc gtgaaaaaca tgttccactt
     8821 ggtggccctg atgggggaga tggtggaaat ggtggcgata ttattttcgt atgtgataat
     8881 aatacccaca ctcttgtaaa tttcaaaggc aaaagagaat tacgcgcaca aaatggtgct
     8941 ggtggaatgg gacgcaataa aaatggcaaa aaaggtgaaa atttagaact tatagtaccc
     9001 gaaggaacgc aagttatcga tgcacaaact aatgaaattt tactcgatct taccaaagaa
     9061 ggacaaagag agcttttttt aaaaggtgga aaaggcggac ttggcaacac tcattttaaa
     9121 cacgccacca atcaacgccc cgattacgca caacctggta taaaaggaga aagtcgctta
     9181 gtcagacttg aacttaaact tattgccgat gtagggcttg taggttttcc aaatgtagga
     9241 aaatctactc ttataagcgt tgtttcaaat gcaaaacctg aaattgcaaa ttatgaattt
     9301 actaccctta ctccaaaact tggactcgtg gatgtagatg agtataattc ctttgttatg
     9361 gctgatattc cagggattat cgaaggagca agtgggggta aaggcttagg acttgccttt
     9421 ttaaagcaca tagaaagaac gagcttttta cttttcgtgc tagatcctat gaggcaaatg
     9481 cctttaaaag aacaatttat agtactaaga aaagaacttg aaaaattttc caatgaactt
     9541 tttgggcgta aatttggtat catgatttca aaaagtgata gtgttaattt aggagaagaa
     9601 tttgccgagc aaattacttt aaacattaat gagttagaaa attatctcaa agaaataaat
     9661 aacccacaaa gctttttaat caaagtctca agccttgaaa aaacaggact taaagaactt
     9721 aaattcatgc ttttagaaga aattaaaact ttaagaaata acaaataaaa attttaacaa
     9781 tctaggaagt gttttatatt aaaaatttca aacactccct attttttcaa aaaataacta
     9841 gtttatatga aattttggct aaaattataa aaatttttta aggaataagc atgaaaagaa
     9901 tagttgttaa agtgggttct catgtgatta gcgaagaaaa cactttaagt tttgagcgtc
     9961 ttaaaaattt agtcgcattt ttagctaaac tcatggaaaa atatgaagtg attttagtaa
    10021 cttcagcggc tatttcagca ggacacacca aactagatat cgatagaaaa aacctcatta
    10081 ataaacaagt tttagccgct attggacaac cttttttaat cagtgtttat aatgaacttt
    10141 tagccaaatt taacaaacta ggcggacaaa ttttacttac aggtaaggat tttgactcta
    10201 gaaaagctac taaacacgca aaaaatgcta tcgatatgat gataaattta ggaattttac
    10261 ctatcatcaa tgaaaatgac gctacagcta tagaagaaat tgtctttggt gataatgata
    10321 gcttaagtgc ttatgctacg catttttttg atgcggattt gcttgtgatt ttaagcgata
    10381 ttgatggatt ttatgataaa aatcctagtg aatttagtga tgcaaagcgt ttagaaaaaa
    10441 tcactcatat taaagaagaa tggctacaag caaccataaa aacaggtagt gagcacggaa
    10501 caggtggtat agtaaccaaa cttaaagcag ctaaattttt acttgaacac aataaaaaaa
    10561 tgtttttagc aagtggcttt gatttaagtg tggcaaagac atttttatta gaagataagc
    10621 aaataggtgg aactttgttt gagtgattaa tttattaaat tctcttttaa aatcaaataa
    10681 gttataatta aaacttttaa tttcacacaa agcgaaaaaa tgaaaaaaat tatttttatg
    10741 ggtactccat cttatgcaac ttgtatttta aaagcactag tagaaaatga aaattttaaa
    10801 ctcgtagcac tttttaccca gcctgataaa gccgtaggta gaaagcaaat tttaactcca
    10861 agtgatacta aggctttttt aagtcaaaat tatcctagta ttcctatttt tactccaagt
    10921 tctttaaaag atgaaaatat tataagagag attaaggatt taaatcctga ttttatcgtg
    10981 gttgctgcct atggaaaaat tttacctaaa gccattttgg atttagcacc ttgtgtgaat
    11041 ttgcacgctt ctttacttcc aaaataccgt ggtgccagtc cgattcaaag tgcgatttta
    11101 aataaagatg aaaaaagtgg agtttgcacc atgcttatgg aagaagggct tgatacaggt
    11161 gctgtacttg aaagcttaga gtgtgatata aaagataaaa attcaagtga agtttttgaa
    11221 cttttagcaa atttggccgc taagctcatc ctctctactc ttttaaattt tgataaaatt
    11281 atccctaaaa aacaagagga aagtctagca acgctttgta gaaaaatcaa aaaagaagat
    11341 gggcttataa atttgcaaaa tgcaagagaa ctttatcaaa aatatctagc ttttacccct
    11401 tggcctggag ttttcttgga aaatggactt aaattcttag agcttgaact tgtggatgaa
    11461 ttaaaacaaa atgctaggat gggtgaaatt ttagaattag aaaaagaaag ttttttgctt
    11521 gcttgcaaac aaggagtttt gcgtattaaa aaacttcaag aaagtggaaa aaaagctctt
    11581 gatggtagga cttatttaaa tggaaaaagg cttaaaagtg aagatagttt gtgttgaaag
    11641 tatagactca actcatcttt ttttatgcga gcaaatacgc aatggaaaga ttgatggaaa
    11701 ttttgctatt tatgctttag aacaaacaaa tggagttgga agtagggaaa attcttggca
    11761 aagctctaaa ggaaatttac atctttcttt ttgtattaaa gaagaagatt tgccaaaaga
    11821 tttgcctttg gcttctgtaa gtatttattt tgcttattta cttaaagaac ttttacaaga
    11881 aaaaggttct aaaatttggc ttaaatggcc taatgattta tatttagatg ataaaaaagc
    11941 tggaggggtt ataagtgcta aaatttcaaa ttttatcata ggcggtatgg gtttaaatct
    12001 gaaattttca ccccaaaata cagctttatg tgatatagaa atttcgctta aagatttagt
    12061 gagtgagttt ttgcaaaaag tagaaaaaaa aattttatgg aagaatattt ttagcaagta
    12121 tatgttagaa tttgaaaaat caagaaaatt tagcgtccat catgaaggta aagttttttc
    12181 acttgaaaat tcttttttgt atgaagatgg ttcaatttta ctaggtgata aaagggtgta
    12241 tagtttaaga tgagcgaaat tattacaata gcaaatcaaa aaggtggagt aggaaagact
    12301 acaacagcag taaatttagc cgcttcttta gctgtggctg aaaaaaaagt acttttgatt
    12361 gatgttgatc cgcaagctaa tgcgactaca ggacttggtt ttaatcgtaa taattatgag
    12421 tataatattt accatgtttt tataggaaga aaaaagcttt cagatattat tttaaaaaca
    12481 gaattgccac aacttcattt agctccttca aatataggtc ttgtaggtat agaacaagag
    12541 cttgctaaag gtgaaaataa tgagaaaaaa atgctgctta aaaatcaaat tcaagaagtg
    12601 attgatgaat atgattttat tattattgat tctccgcctg ctcttggaag tattactata
    12661 aatgcttttg cagcaagtga tagtgtaatt atccctatac agtgtgaatt ttatgcgctc
    12721 gagggtgtag ctatggtttt aaatacaatt aaaattatca aaaaaactat taattctaaa
    12781 ctcagggttc gtggattttt accgacaatg tatagctctc aaaataatct ttctaaagat
    12841 gttgtagatg atttgaaaca aaattttaaa aaacaacttt ttactattaa tggaaacgaa
    12901 gatgacttta ttgtgatccc tcgcaatgta aaacttgcag aaagtccaag ttttggaaag
    12961 cctataattc tttatgatat taaatcgcca ggttctgttg cttatcaaaa tttggcgtat
    13021 tctatattag gataattata atggggttaa ataaagatag gggtttaagt agtttaatca
    13081 gtgatatgga tactgtttat agtaaagaat tgggttttga taaaaatcaa agcactatga
    13141 tagaaattga tcaaatttca cccaatccat ttcagccaag aaagaatttt gatcaagaag
    13201 ctttagatga acttgctaat tctatcaaag aatttggact tattcagcct attattgtat
    13261 ttaaaaaaaa taataaattt attttaattg ctggggaacg tcgcttaaga gcagtgaaag
    13321 cattaggaaa aaaagaaatt ctagctttta ttgctgatat tgatgagaat aagcttagag
    13381 aattggctct tattgaaaat atacaaagag agaatttaaa tcctattgag cttgctaatt
    13441 cttataagga tttaatgcaa gttcataaaa ttactcaaga gaatttagca gaacttattc
    13501 ataagtctcg tactcaaata acaaatactt taagacttct gaatttagat attagaactc
    13561 aagagttgat tgcttctgga aaaatttctc agggtcatgc taaagttttg gttggtttag
    13621 atcaaaaaga tgaaaaaatg ttggttgata gcataatagg tcaaaaactt aatgttagag
    13681 atactgaaaa aatagttaaa aaaataaaaa ataatgaaag cttacctaat caagaatttg
    13741 aagatgaaat aaaaaaatta aaacaaatac taaatcgctt tggatttgac tgcaaaaata
    13801 aaaataatga ttttgtaatt catttagaaa atattgataa aattaaaaaa ttaatcaaaa
    13861 tgcttgaaaa gctttaacca aaatcttagc ttttttatgg taaaatagtc cttcgaaaat
    13921 tctaaccaag gagaattatg tttgaagata tgcatccttc cataatgctt gctactatgg
    13981 ctattttttt agctatgata gttattttaa atagtatgct gtataagccg cttttaaaat
    14041 ttatggatga aagaaatgat tctataaaaa atgatgagaa taaagtaaaa gaaaattctc
    14101 aagaagtttt aggtgtgaat gatgaattag aagctattca tattaacact agagaagaaa
    14161 ttcaaaaaat taaacaaagt gctatagctg ctgctaaaga agaggcagag caaattctta
    14221 gaagcaagaa agaagaatta gaaagaaaaa tggccagttt ttatgcagat ttagccgttc
    14281 aaaaaaaaga gttgcaagaa catttaaaca tacatttacc tgagcttaag caagctttgc
    14341 aaaataacat aaagaaaatt taagaggaga gaaatgagta agttattctt tattatattt
    14401 ttgctacctt tatatgcttt tggtgcatca aatggtagtg gagaatatga tattattcca
    14461 aggactatta attttctaat ttttgtggct atattgtatt attttgttgc aactccattt
    14521 aaaaattttt acaaaaaccg tattgtaaaa atttcttcta aacttgatga aattcaaaaa
    14581 aaacttttag aaagtaaagc taagaaatta gacacgatga aaaaacttga agaagctaag
    14641 gcaagtgctg ctgccgcttt aattacagca aaaaaagaag ctgaaatttt agttcaaaat
    14701 attaagaaag agactcaaga tgagttagat ttacttcaaa aacattttga ggaacaaaaa
    14761 gattatgaat ttagaaaaat ggaaaaagaa ttagtatcaa atactttaaa tgaaattttt
    14821 tctgatccaa atatgacatt aaaacagagt gaaataatag aacttatgat gaagaaggta
    14881 tcttaaatat ggaaaatata attgcaagaa gatatgcaaa agcgatagct tcaagagctg
    14941 atataaatga tttttatcag aatttgtgta ttttaaattc tgcttttgtt ttgc
//
LOCUS       DAZAND010000037        14937 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.037, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000037 DAZAND010000000
VERSION     DAZAND010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14937
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.037"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            3..1241
                     /locus_tag="ACHDOB_000875"
     CDS             3..1241
                     /locus_tag="ACHDOB_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HFN3325803.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPITYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWQEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALENYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANLNAVDDLGFNALDFALAAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            1238..1987
                     /locus_tag="ACHDOB_000876"
     CDS             1238..1987
                     /locus_tag="ACHDOB_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HFN3325804.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQKGYKVIALARRKERLEELKNS
                     HKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKVVIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            1984..3717
                     /locus_tag="ACHDOB_000877"
     CDS             1984..3717
                     /locus_tag="ACHDOB_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HFN3325805.1"
                     /translation="MNKFLVLLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFAGVLSGTFLLSLSANIFKAQHLAFVNFYNTAVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISDISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTAELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASANPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            3714..4787
                     /gene="trmA"
                     /locus_tag="ACHDOB_000878"
     CDS             3714..4787
                     /gene="trmA"
                     /locus_tag="ACHDOB_000878"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030697 - tRNA
                     (uracil(54)-C5)-methyltransferase activity, S-adenosyl
                     methionine-dependent [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HFN3325806.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPKLLEYLRQDNKLKEKL
                     FGVEFLTTKQELSITLLYHKNIEDIKSNLENLSNILHINLIARSKGKKLIFKTENLRQ
                     TLNIQDRKIFYEFNNDCFIQPNTTINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKVLATEISKSNINFALKNCKLNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRVE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(4774..5190)
                     /locus_tag="ACHDOB_000879"
     CDS             complement(4774..5190)
                     /locus_tag="ACHDOB_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HFN3325807.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGAFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            5309..5722
                     /locus_tag="ACHDOB_000880"
     CDS             5309..5722
                     /locus_tag="ACHDOB_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HFN3325808.1"
                     /translation="MNEKETISYIINASKNIAIFALSPDKTKASYRVAEFLQRKNYKI
                     FPIYPKEEFILNEKVYRNLDQIEEKIDTLILFRKGEVALEILPKLVEKNIKNLWLQLG
                     ISNETAKEECKKLDINFIQNRCIMLEYPHFKTKEK"
     gene            5722..6933
                     /gene="ilvA"
                     /locus_tag="ACHDOB_000881"
     CDS             5722..6933
                     /gene="ilvA"
                     /locus_tag="ACHDOB_000881"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - threonine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006567 - threonine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HFN3325809.1"
                     /translation="MLELNKIYKAKQQISEFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSTEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYAFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVAALLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(6930..7655)
                     /gene="truA"
                     /locus_tag="ACHDOB_000882"
     CDS             complement(6930..7655)
                     /gene="truA"
                     /locus_tag="ACHDOB_000882"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HFN3325810.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGVLSHLGIVSPL
                     LMASRTDKGVHASYAVASVECGDHFVNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHSSYSPFMASYVHFYPKFDLDKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(7652..8677)
                     /locus_tag="ACHDOB_000883"
     CDS             complement(7652..8677)
                     /locus_tag="ACHDOB_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HFN3325811.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(8677..9453)
                     /locus_tag="ACHDOB_000884"
     CDS             complement(8677..9453)
                     /locus_tag="ACHDOB_000884"
                     /EC_number="3.4.23.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HFN3325812.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKPFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLPISLLINEILGIILLILAYSLSQNFYDFLFLSLF
                     LFNLFLLSLIDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLLNAFS
                     FGGFVFLLKSLVFFLMNFRKKDEILENLGDADIIIMSCIGGILGFEYGFLVLLIASIL
                     TLPFFIFFKIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
     gene            complement(9450..10118)
                     /gene="uppS"
                     /locus_tag="ACHDOB_000885"
     CDS             complement(9450..10118)
                     /gene="uppS"
                     /locus_tag="ACHDOB_000885"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HFN3325813.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            complement(10122..10739)
                     /locus_tag="ACHDOB_000886"
     CDS             complement(10122..10739)
                     /locus_tag="ACHDOB_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325814.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFIFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            complement(10736..11890)
                     /gene="coaBC"
                     /locus_tag="ACHDOB_000887"
     CDS             complement(10736..11890)
                     /gene="coaBC"
                     /locus_tag="ACHDOB_000887"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015941 - pantothenate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HFN3325815.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNSLLKFAS
                     KMSFEALADEILCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTQNSLKILKENKALIIEPICKVLACKDEGVGAL
                     AEVKDIFNITKRELLKEKFWCNKSVVITGGGTRERIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLSHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            complement(11887..13176)
                     /gene="glmU"
                     /locus_tag="ACHDOB_000888"
     CDS             complement(11887..13176)
                     /gene="glmU"
                     /locus_tag="ACHDOB_000888"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HFN3325816.1"
                     /translation="MKTSILILAAGLGTRMKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALRGFEPKNERVLILCGD
                     MPLVEQTSLEALLSNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQEKIKKYWMQQGVIFHLPQSTFIGTDVEFMGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAEHKMIKDYYYKKFQK"
     gene            13320..14054
                     /gene="fliP"
                     /locus_tag="ACHDOB_000889"
     CDS             13320..14054
                     /gene="fliP"
                     /locus_tag="ACHDOB_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HFN3325817.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            complement(14070..14840)
                     /locus_tag="ACHDOB_000890"
     CDS             complement(14070..14840)
                     /locus_tag="ACHDOB_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HFN3325818.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILVPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGLFDSLGEKYLKDVKDTFKKNNLEFFF"
BASE COUNT         5311 a         2474 c         2065 g         5087 t
ORIGIN      
        1 tattgaagtt attattcact tccttttgtt gttttgcaag tttaatggct agcgatgcca
       61 ttaactgcga caacattaaa aataataaaa cattgctaaa tgaaagttca aatttagatt
      121 atttaaatat agcttcaagc tgtaaagaat ctttaaaaaa tcaagatttt acaaaaaaac
      181 tctatgcgat ttccaatgaa attcgcggaa gcaatagctc ttgtaatggt gtggcttatt
      241 tgcccaaatt acaacaattt gattttttat tattaaaaat agccatcgac cccatcactt
      301 atcaaaaaac tttagataca cctgagaatt tagaaaaaaa atatgatatt ttaaaatctt
      361 actttagata ttgggcatat caaagtatag gaaattttag actttacaaa gctttttggc
      421 aagaatacaa taacgctata gaacctttag aaaagtattt tgaaagtaat tttaattttg
      481 acaaaggtag caatatttac tatactagca atgccttaaa cgaattttta aattgggctg
      541 ttggagaaac aaaaatttac aaagacatta gtcctttagc aaaaatcatg tcaaataaaa
      601 attattcggt atcttatata caagatttta ttttttcaaa taatccaagt caagatgatc
      661 ttactatagc cttacaagca gcgcttctaa atcaaagaga aaaagaaatt ttagaacttt
      721 tgattcgttt tggcgctagg attgacgaag gttatgaaag tgctattttt tacgcattgg
      781 aaaattatga aaatacaaat tttttaatcc aaaatggagc gaatgttaat caagccaatg
      841 cctttggtaa aactccgctt ttttatgcca tagagtttaa tcgtcttgat atcataaaac
      901 tacttcttga taatggagca aatgttaatc aaaaatatat taataacaat gaaaaattag
      961 cattaagtgc gaacataggt tcaaatacgc cttattttat tacattttgt gctctagagc
     1021 acacttcaaa aaatgtttta atgcatgctg cagcttatgg aaatgttgaa attttaaaac
     1081 ttcttatctc aaaaggagca aatcttaacg ctgttgatga tcttggtttt aatgcacttg
     1141 actttgcgct agcagcaggc aaaaaagaaa atgctgatta tctaaaaagc ttgggtttaa
     1201 aagcaaatga aaatctattt tacggaggta gtttagaatg aaaaccgcat ttattacagg
     1261 agctagttca ggttttggta gagcttgcgt tgaagctttt atacaaaaag gctacaaagt
     1321 aatcgccctt gctagacgca aagagcgtct agaagagtta aaaaattctc acaaagataa
     1381 gatttacacg ctttgcatag atgtaagaaa tcaaaaagaa atctttgagg ctattgaaaa
     1441 tttacccaaa gaatttcaag aaattgatgt gctttttaat aatgcaggct tagctttagg
     1501 ggtagatgaa tttgataaat taaaccttga agatattaac actatggtag atacaaacat
     1561 caaaggattt ttatatgttg caaaagttgt tattcctata cttcgtaaac aaaaaaatgc
     1621 ttatattttt aacttaggtt cggttgcagg acgcaatcct tattttggag gcaatgtgta
     1681 ttgtggaacc aaagcctttg taggacaatt ttcattggcc ttaagaaatg atcttagagg
     1741 aagcaatatc aaagtaacaa acattgctcc aggactttgc aaaactgaat ttagtgaagt
     1801 gcgttttaaa ggagatatcc aaaaagctga tgcagtgtat gaaaatacgc aatttatcag
     1861 tgctaatgat attgccaaag tggtaatgtc tattattaac ctaccaagcc atattaatgt
     1921 taatgaaatc gagcttatgc cggtaacaca aacttggaat ggattttata tagaaagaga
     1981 tgaatgaata aatttttagt tttattgttt ttacctttag ttgcatttgc aaactcctca
     2041 gaagcagctg caaatgctaa tttatttgga gcttttacgc ttataccgcc tttagttgct
     2101 attgctttag cctttatcac aaaagatgtt attttgtcac tctttgctgg agttttaagc
     2161 ggaacttttc tacttagcct ttctgcaaat atttttaaag cacaacattt agcttttgta
     2221 aatttttata ataccgcagt agaatctttt tcaaagatta tttcttatat cttaggttca
     2281 acttcagatc cagtaaatgc aggaatcatt ttacaaattc tttgtatagg tggtcttgtg
     2341 gcacttatca caaaaatggg tggtgcaaaa gctgtagcat taaaatttgc caaaagagcc
     2401 aaatcagctg tatcagctca agttaacact tggtttttag ggcttttaat attttttgat
     2461 gattatgcta atttactgat cgtaggtcca attatgcgtc ctttggcgga taaatttaaa
     2521 atttctcgtg aaaaatttgc ctttattatc gactctaccg cagctcctgt ggcaggaata
     2581 gctgtaattt ctacttggat aggcttagaa gtttctttaa ttaaaaccgc ttatgaacac
     2641 ataggcatta gcgatattag tgcttttgga atttttgtcg aaaccatacc ttatcgtttt
     2701 tataatatct tcatgctttt ttttgtagtc atgactgcaa tcatgggacg tgagtttggt
     2761 tctatgtaca aggctgaagt gcgtgcaaga accacaggac aaattgcacc tctacctaaa
     2821 tcaggcacac tagatactgc tgaattagag gatcagtttt tagcgccaaa agaaggtatt
     2881 aaaattcgtg cttttgatgc tattgttcct atttttactt taatcatttt agctatatta
     2941 ggattttatt ttaatggact tagcacttta gaaggcgaag aacttgcaaa agcaagtgcc
     3001 aatcctttgt cttttgaaac ttttagggct gcttttggaa atgctgattc ttctgtggtg
     3061 ttattccaag ctgctttgtt tgctgctatt gtagcgattt ttatcggggt gcgtcgtaaa
     3121 attttcaatc ttaaagaagc ggtagaaact tggatatatg gctggaaaac catgattttt
     3181 accatagtat tgcttttatt tgcttggtcg ctttcaagta tagtaaaaga tctaggaact
     3241 tctttattta tcactagttt gcttgcagat aaattgcctg agtttatttt gcctgctact
     3301 atttttgctt ttgcttcagc catttctttt gccataggaa caagctatgg aactatgggg
     3361 attttaatgc ctttggctgt gcctttagct catgaaatcg ccaaaatcaa tggtatggat
     3421 gcaaatgcta tgcatcatta tatggttatt aatataagct gcgttttaac aggtgcgatt
     3481 tttggaaacc attgctcacc aatttcagat aatgtaatcc tttcatctat gagcgcaaaa
     3541 tgcgatcata tggagcatgt aagaacacaa attccttatg ctttatttat ctgtggtatt
     3601 tctttaatcg ctggatatat tcctgtatct ttaggactta gcgtttggtt tgtcttgcct
     3661 ttaaatttca tacttattgc gcttttacta agactcatcg gaaagaaagt tccatgagtc
     3721 ttgaaaattt tggaaatttt ctcactttag atgaaaaaca ctctttcata aaaaaatatt
     3781 ttaaagaatt ttatacaaag gattttaaac tttttgcctc aaaagataaa cattatcgta
     3841 caagagctga actttcattt tatcatgaaa atgatacgct tttttatgca atgtttgatc
     3901 caaaaagcaa aaaaaagtac attatagaat atttagattt tgctgatgaa aaaatttgtg
     3961 cttttatgcc aaaacttcta gaatacttgc gtcaagataa taaattaaaa gaaaaacttt
     4021 ttggtgtaga atttttaacc acaaagcaag aacttagcat aaccttactc tatcataaaa
     4081 atatagaaga tataaagtca aatttagaaa atttaagcaa tattcttcat atcaacctca
     4141 tagcaagaag taaaggcaaa aaacttattt ttaaaacaga aaatctaaga caaactttaa
     4201 atattcaaga tagaaaaata ttttatgaat ttaacaacga ttgttttatt cagcctaaca
     4261 ctactataaa tgaaaaaatg attacttggg tgtgtgaaat tttaaatact caaaaaagaa
     4321 tggatttact tgagctttac tgtggatatg gaaattttac tttagcttta gcaccattct
     4381 tttttaaagt tttagccact gaaatttcaa aaagtaatat taattttgct ttaaaaaatt
     4441 gcaaacttaa taatacaaca aatatccact ttgcaagact ttcaagcgaa gaattaagtc
     4501 ttgctatcaa aaaagaaaga gaattttttc gtttaaaaga tattcgattg gatgatttta
     4561 atttctctca tgttttagtt gatccacccc gtgcaggact tgataaaagc gtaattgact
     4621 taataaaaaa atatgaaaat attatttata tttcttgtaa tcctatcact ttaaaagaaa
     4681 atttaaaaga attaagccta acacatagag tggaagagtt tgctcttttt gatcaatttg
     4741 tcaatactcc acatcttgaa tgcggagtat ttcttagcaa ggtataaaaa aataattcat
     4801 taatttagcc agtattacta tcgcgataca aagcacaaat acaaaagggt ggataaaagc
     4861 accgagtgga tttttcttct ttaatataaa atgacaaaat aaagaaaaaa caactaaaga
     4921 taaaattcca aaagccaaaa taatttttac agcaaaaagt aaatttaaag gtttaaaatg
     4981 aaaacctgcc aaagcacctc cgcttaaaaa aagcaaaaga accacaaaag gcattatttt
     5041 aaccccagta gcactaaaaa gacttttgtc aaaattagga tttttctttt taactacgcc
     5101 caaaacaaat acatcaacaa acaaataacc tataaacaaa atagcacaaa gaagatggat
     5161 tgttaaagta tatggataaa attcttccat ttttccctcc ttattaaact tcggaatttg
     5221 ctatattata acactttttt cattttttga attcacttta gttaattttt taatcattta
     5281 agataaaata ccaaaacaaa ggttaacaat gaatgaaaaa gaaactatct cttatattat
     5341 aaatgcaagt aaaaatattg ccatatttgc cttaagtcca gataaaacaa aagcttctta
     5401 tagggtagca gaatttttac aaagaaaaaa ttataaaatt tttcctattt atcctaaaga
     5461 agagtttatt ttaaatgaaa aagtttatag aaatttagat caaatagaag aaaaaatcga
     5521 tacacttata ctttttagaa aaggcgaagt ggcactagaa attcttccta agcttgttga
     5581 aaaaaatatt aaaaacctat ggcttcaact tggtattagt aatgaaacag ccaaagaaga
     5641 atgtaaaaaa ttagatataa attttataca aaatcgttgc attatgctag aatatccgca
     5701 ttttaaaaca aaggaaaaat agtgttagag cttaataaaa tttacaaagc aaaacaacaa
     5761 atttcagagt ttgtaaacaa aactcctttc atatactctt cttttttaag tgatatttgt
     5821 caaagtgaaa tttatcttaa aaatgaaaat ttacaaatta caggtgctta taaaattcgt
     5881 ggagcttata ataaaatagc caatcttagc actgaacaaa aacaacatgg agtcattgcc
     5941 gcaagtgcgg gaaaccatgc tcaaggcgtg gccattagtg caaaaaaatt tggcattaag
     6001 gcagttattg taatgccaga atccactccg ctcttaaaag tttctgctac aaaagcctta
     6061 ggagcagagg tgatactcaa aggggataat tttgatgaag cctatgcctt tgcaacctct
     6121 tatgctaaag aaaataatct tagctttatt catccttttg aagatgaatt tgtaatggca
     6181 ggacaaggaa ctttgatgct tgaaatgctt gatgaaataa gcgatcttga tatgattatc
     6241 gcacctgttg gaggtggagg acttataagt ggtatcgcaa gtgcagctaa acaaatcaat
     6301 ccaaacatta aaatcatcgg cgttggagcc aaaggagctc ctgcaatgta tgaaagtttt
     6361 catgctaaaa aaatcaaaaa tgcaaaaagc gtacgcacta tagccgatgg tattgctgtg
     6421 cgtgatgcaa atcctattaa ttttaatatt attttagaat gcgtagatga ttttatccaa
     6481 gttgatgatg aagaaatcgc taatgcggta ttgtttttac ttgaaaaaca taaaatcata
     6541 gttgaaggcg caggagctgc gagtgtagct gccctgcttc atcaaaaaat aaatacacaa
     6601 aatcataaaa aaattggcgt agttttaagc ggaggtaata tcgatgcaca aatgctaaat
     6661 atcatcatag aaaaaggttt atttaaatcc tatagaaaaa tgcaaattca tgttacttta
     6721 gtagataaac ctggggcatt attacacctt acagacagct taaaaatagc caatgcaaat
     6781 atagtaaaaa tcgactatga tagattttcc accaagcttg attatggcga tgcgatgatt
     6841 tcaattaccc tagaaaccaa aggtaaagaa catcaagaag aaataagaaa aattttaacc
     6901 caaaaggcct ttaatttcta tgaaagtttt taataacata tacggcttaa ataaagccca
     6961 tttggcggtg ctaaaaagtg attgtattgc tttttagctt caatctgttc tttgagttct
     7021 ttttcactca tttttccttc taaaaccttt aaaacacttg ctacgcttaa tctaatttgc
     7081 cctcttaaaa aaccattagc tttaaaatga aaaatgctaa aatctttata agcataagct
     7141 ctagcaataa aaatttctct taaagtcgtt ttattatccc ctccactttt gcaaaaaaac
     7201 tttaaatcct tttttcccac aaaaaaaccc aaaagctcat tagccttatc taagtcaaat
     7261 ttaggataaa aatgtacata agaagccata aaaggactat aagaagagtg agaaaatata
     7321 tagcggtatt ctctactttt tacatcaaat cttacttcaa aatcatcttt tactttttca
     7381 atttttttga tatggataaa aggatgggaa aatttattaa gctgtttttg aagatattct
     7441 aaatttacaa aatgatctcc acattctaca ctagctacag catagcttgc atgcactcct
     7501 ttatctgtac gagaagccat caaaagaggt gaaacaatac ccaaatgcga taagacccca
     7561 cttaaagcat cttgaacacc ttttttatga ggctgagtag cagaacctaa aaaagcagag
     7621 ccatcataag aaaatataat ttttattttc atcaataacg actcaaaatc attttcttaa
     7681 aacaataagc cgaaacaaat aaacttaaag aaaaaattcc aaggcaagcc aaaattggag
     7741 gttgagaaaa agaacttaaa agtccaaaat atatagcaat cactccaaac atacctaaat
     7801 acacatagcc tttttcataa cgataagtaa ccaaaccaaa acaaagcgca aaaagcgtac
     7861 tagcaagtgg aaacaaggct atagttgtat aaatcacaaa ttctcttgct ctttgtggat
     7921 tttcgtttaa atcattccag tattcataaa atttctttgt ttgaagattg tctgtattaa
     7981 actgagtatt tactactaaa gtgtcaaatt ctccactaaa aatactttga ccttgctcaa
     8041 aattatacat tttgccttga tttaagctaa aagcaaagct atcatctttt ctttgcacat
     8101 gcgcttcttt ggctatgata agttgttctt tatcatctgc tttatgttta gggcgataca
     8161 taattatgtt ttcatactta tcactatctt gtttttctat aaaaatcatc cagtctaaaa
     8221 atttttgccc aaattctcct gttttgtagt taaatttcac ttgagtgctt ttatagttta
     8281 caaagttatc ctgaagttca aatactatag gtatcattac caaagccaca acaagcataa
     8341 aagcactaat caagcttgca attttaagga aaaattttgc caaaatcatt ggtgaaaatc
     8401 ccaaagtaaa aagtactatg ctttcatttt ccttagaaag cctaaacaaa gccaaagtta
     8461 aagaaataaa aaaagatata ggcaaggtaa aaattaaaat tctaggcaac ataaacccat
     8521 aaagctttaa aagatccaaa aaactaatct ctatgcttga agtaagtttt gcaagttgaa
     8581 taaaaaacac catagataca atagcaaaaa gtacgaaaaa tatagacaaa ttcgtactta
     8641 aaaattgatt taaaacatat cttaaactaa gcttcattag aataatccta agtttttata
     8701 aaataaaact gccacaaaag cgatatttaa aaagggtatc atagcaagtt cttgctcttt
     8761 tattgcttta attttaaaaa aaataaaaaa aggcaaagtt aaaatagaag ctataagtaa
     8821 tactaaaaat ccatactcaa aacctaaaat tccacctata caagacataa tgataatatc
     8881 agcatcaccc aaattttcta aaatttcatc tttttttcgg aaattcatta gaaaaaaaac
     8941 caaacttttt aataaaaaaa caaatcctcc aaaactaaaa gcatttagca aaaaacctcc
     9001 gctaaactct ttaaaaatca aaaaatgtaa aatttcactt tccctaaagg cgtaaaaaaa
     9061 agcaaataaa aaagcgctcc aaagtaaaat ttgtggtacg gctttgagtt taatatcaat
     9121 taaagaaagc aagaaaagat taaataaaaa tagagataaa aataaaaaat cataaaaatt
     9181 ttgacttaaa gaataagcca aaataagcaa aattatgcct aaaatttcat tgattaacaa
     9241 agaaataggc aaatgacatt tgcaagtttg acattttgct tttaaaaaaa tataagaaaa
     9301 aataggaata atttcatagt attttaattt tgtatcgcaa gaaaaacaaa aagagcgcga
     9361 gataaaaaag ggcttttttt caattatcct acttgccaaa cttgtgcaaa aagaacccaa
     9421 acaagcccct agaattatta tgaaaaatat cattttccaa aagttctttc tctatttcta
     9481 aattctttaa taatcctttt aaattctctc ttggtaagag atggaaataa agtttcacta
     9541 aaataaattt cagcatatga acactgccaa agtaagaaat ttgaaagcct tttggcattt
     9601 ccaacgcgaa gcatcaaatc cacatctaaa ggtaaatcta aattttgcgt taaattttct
     9661 tcatttagct caagtttttt ttcaatcaca cgcttagcag ctcttataat ttcatctctt
     9721 gcaccataac ttatagccaa attaacacaa agtgcgtcac aatgctttgt tttttcttca
     9781 actaaggtaa ttttttctct tactttatct tccaaacgcg ataaatcacc tatagctctt
     9841 aaacgcacat tatttttttc aaatttttct aaagcttcat ctaaacaacg atctaaaagt
     9901 tcaaaaataa aatcaatttc atctttaggg cgcttccaat tttccgtact aaaagcaaaa
     9961 aggcttaaat ttgaaatatt ttcctccatg caaacttcca tcaatttttg catagttttg
    10021 actccttggg aatatccaag ttttgccaaa aaacccttag ctctagccca gcgcctattg
    10081 ccatccataa caacagcaag gtgttttaat tcattcattt ttcatccttt aaaatcaaaa
    10141 agccttttaa aaacaaacaa aggttcaatc ttgttttctt gcgatacatt aaaatctaaa
    10201 tgttcattta aaaatttttg caccttagca aaaggtgtaa aaacactaat gccttgcgag
    10261 tctattaaaa ttttcaaagc tccaaaaaca ctaaaatata agtaaatttc taaatatttt
    10321 gctcttttac gcatttgaaa taagcaagat ttattttcaa agataaaagg aatatgataa
    10381 atattttcaa aacttgcaaa aagcatttct tttaatatct gataacgctc tatatcttta
    10441 caatctaaaa gattttgtat gataaatttt ttataagaaa ttttatcctc taaaatagcg
    10501 attatcaaag ccaatccctc ttcaaaaggt ttgaaattag gacgctttga aagatgttta
    10561 aattgtataa ctccaccatt ttgcatataa agttcggcta aatattcagc accaatttca
    10621 agctctatca tgcttttggt ttgaatcttt ttgtgattta acaaaagcgt ataatgtcca
    10681 taacctgatt tagccaaaac tttcatttgt ataggcaagg tagaattaat catactcata
    10741 atttttcaca ccattttact aattcaaatg ccaatttttc tttgctttgc aaagtgcttt
    10801 tattttcatt gtttaaagtg ataaaataaa gttcattttg atcacttcca aaataatttt
    10861 tttgatcaat gatattaaga caaaccatat caagttgctt atcttttaaa gattttttcg
    10921 cattttctaa ggcattttga gaatcaaatt ccatcttaaa acctatcttt ttgccttgaa
    10981 atttacaagt tttaagcaaa tcttcattta aagatagatg taaatttaaa ccctgcaaat
    11041 gctcattttt tttaattttt ccttttacac tttgtgggat aaaatcactc actgcagctg
    11101 tcataatcaa aaagtcatga cttaaatttt tatccaaaag ctcctttaga tccttagaac
    11161 tttcaaattt gcaaagctca taaggcgtat caaattccac agagcttaaa agttttaccc
    11221 tagctcctaa aaaataaaaa gcatcagcta tggcctttgc catttttccg cttgaaaaat
    11281 tactcacaca acgcacatca tcgattcttt cccttgtgcc accacctgtg ataactacgc
    11341 ttttattgca ccaaaacttt tcttttaaaa gctctctttt ggtgatatta aaaatatcct
    11401 taacttcagc taaggctcct acgccttcat ctttacaagc taaaacttta caaataggtt
    11461 ctataatcaa agctttattt tctttaagta tctttaaaga attttgcgta ctgaaatgat
    11521 gaaacatatt tgtatttgcc gcaggagcaa tgataagagg tttatttgct gcgattaagg
    11581 tttggataaa aagattatcc gctataccaa aagcaagttt attgatagaa ttaacacttg
    11641 caggagcaaa taaaacaaga tctacatcct tgctaaaagc tatgtgattg tttgaatttt
    11701 gccaactttc attttcctcg cataaaatct catcagccaa ggcttcaaaa ctcattttgc
    11761 tagcaaattt taacaaacta ttagaaagca aaactttcac cctaaagcct tcttttttaa
    11821 acaaagaaat aagctcgtaa gatttataaa aagctatact gccactaatg gctaaaagta
    11881 tggttttcat ttttgaaatt tcttgtaata ataatctttt atcatcttat gctctgctct
    11941 attgataaac aaagcacctt tttctacatt gacacttact gtgcttcctg ctgctatgat
    12001 cacttcatct tcgattttta caggtgcgat aaattgcgta tccgaaccta caaaaacatt
    12061 ttttcctatg atggttttat gcttttttac cccatcataa ttacatgtaa tagtcccaca
    12121 gcctatattg gttccactat ctatctcaca atctcccaaa tagctcaaat gccctgcttt
    12181 tacggtattt aactttgcat ttttgcattc tacaaaattt cctatatgag tgttttttaa
    12241 ctcacaattt ggacgcaaat gtgccaaagg ccccacatcg ctattttcta caatggaatt
    12301 ttctatcacg cttgaacttt taatgataga gtttataatc ttacttttac cctctatcct
    12361 tacattttca tatacttcgc attcacccat aaattcaaca tctgtaccta taaaagtgct
    12421 ttgcggtaaa tgaaaaatca caccctgttg catccagtat tttttaattt tttcttgcat
    12481 gaaattttca gctatactga gttcaaattt atcattgatc cccataaatt catcttcatc
    12541 tacaaaaacc gctttaatca tcacatcttt ttcttttgct agttttacaa tgtcggttaa
    12601 ataatactct tttgccgcat tattgttatc aatcaaaggt aaaagctctt ttaaaagcct
    12661 agagtcaatc acataaaccc cagcattgca agtatttatc tctttttctt gtgtatttgc
    12721 atctttaaat tcaacaattt tttcaacgct atcgtttttt atcaccactc tgccataact
    12781 tttaggatct cttgctttaa aaactgctag atttaatttt gcattattac tcaacaaagc
    12841 ttccaaactt gtttgctcaa ccaaaggcat atcgccacaa agaatcaaca ctctttcatt
    12901 tttaggctca aaccccctta aagctcccgc agttcctgga taattttgca agtcttgctc
    12961 taaaatttgt gtttttggaa aatattctaa aatttctttt tcaacgcgtt ctttttgatg
    13021 cgataaaact acacttacat catcacttaa agcaaaagcc ttttttaaaa tgtgtaaaat
    13081 catacttttt tgacaaagct cttgcaaaac ctttggcttt tgtgatttca ttctagtgcc
    13141 taatcctgcc gctaaaatca aaatagaagt tttcattttt tacctttgtt attaagaaat
    13201 ctaaaagact attttagcag tttaaagtta aaatcctaat acccttaaac tagtttttag
    13261 tcatcaaaag ataaaattta aatttcttta ataaaaaaca aaaaaaaggt ttttaaattt
    13321 tgaaaaaaat attattattt ttacttttaa gcatgagctt atttgctgct gaagcaacta
    13381 tccctacagt aaatttaagc ttaagtgcac ccaatacacc taatcagctt gttactactt
    13441 taaatatagt gattgtttta accatacttg cgctcgctcc aagtatagtt tttgttatga
    13501 cttctttctt gcgtcttatt gtggtatttt catttttgcg acaagctatg gggacgcaaa
    13561 gtatgccacc taacactatt ttagtaacct tggctttaat tttaactttt tttatcatgg
    13621 aacctgtagc tacaaaatcc tataatgaag gtataaaacc ttatttagca gaaaaaatag
    13681 gctatgaaga ggcttttata aaaggagcaa agccttttaa agattttatg cttaaaaata
    13741 ctcgagaaaa agatttagcc cttttttatc gcatacgcaa tctacccaat cccaaaacca
    13801 tagatgatgt tccccttaca gttttagttc ctgcttttat gatttcagag cttaaaaccg
    13861 cttttgaaat agggttttta atctacctac cctttttagt catagatatg gttgtaagct
    13921 cagttttaat ggctatgggt atgatgatgc tacctcctac tatgatctct ttacctttta
    13981 aactcttgat ttttgtatta gtggatggat ggaatttgct agtgcaaagg cttgtggaaa
    14041 gctttgtaac ttaagaagga aaatccttct tagaaaaaga attctaaatt attcttttta
    14101 aaagtatctt taacatcttt aagatatttt tctcctaaag aatcaaaaag cccatctttt
    14161 ttgctttctg caataaattc atcaagctct tttttaagtt ctgcattgcc tttttgtact
    14221 gctatacccc aaaactcagg attttcttga aaaggcacca aaatggctct agttgtatct
    14281 tgatgttttt gccaagtgcg ataaatcgta agttgatcat aaaaaaatcc atcagcctta
    14341 ccttgaatca cctccaaaat agcagcattt tctttatcaa ataaattaat agttgcattt
    14401 tttaaatttt taaccgcata taaatgtcct gtagagccac gctttaaagc caaaactttg
    14461 ccctttttat ctaaatcttt gatatttgta atatcagagt tcaaaggagt taaaatagcc
    14521 aaatttgcct tagcataagg aatgctaaaa tccaccactt tctttctctc atcggtaatt
    14581 gtcatagaag acatgataag atctatcttg gctgttttta aagcaggtat caaaccatcc
    14641 caagcgatat tttttactac aagtttatag ccgtttttct ttgcaaaagc ttctaaaaaa
    14701 tccacactaa ttccacttgc tttgcctgtt ttatcgctca tttcaaaagg cggatatcca
    14761 agctccattc ctacaaccaa atcttttgca ctcaaattta aagcaaaaaa agagataaaa
    14821 atcaaaataa tttttttcat aatttccttt caaaattttt tgtaaaaaaa ttatactaat
    14881 tttatcttat tttgttatta gcaatttgtt tcaaacttaa aaaattaaaa cttctaa
//
LOCUS       DAZAND010000038        14680 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.038, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000038 DAZAND010000000
VERSION     DAZAND010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14680
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.038"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..236)
                     /locus_tag="ACHDOB_000891"
     CDS             complement(<1..236)
                     /locus_tag="ACHDOB_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HFN3325819.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDHKLLNLVGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSG"
     gene            304..1587
                     /locus_tag="ACHDOB_000892"
     CDS             304..1587
                     /locus_tag="ACHDOB_000892"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HFN3325820.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEARFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(1574..2179)
                     /locus_tag="ACHDOB_000893"
     CDS             complement(1574..2179)
                     /locus_tag="ACHDOB_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HFN3325821.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(2189..2503)
                     /locus_tag="ACHDOB_000894"
     CDS             complement(2189..2503)
                     /locus_tag="ACHDOB_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HFN3325822.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLITVIIACTVGLKF
                     LS"
     gene            complement(2506..2844)
                     /locus_tag="ACHDOB_000895"
     CDS             complement(2506..2844)
                     /locus_tag="ACHDOB_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HFN3325823.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIVILLLSI
                     IALKWISKEA"
     gene            2978..3514
                     /locus_tag="ACHDOB_000896"
     CDS             2978..3514
                     /locus_tag="ACHDOB_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HFN3325824.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            3511..4056
                     /gene="pth"
                     /locus_tag="ACHDOB_000897"
     CDS             3511..4056
                     /gene="pth"
                     /locus_tag="ACHDOB_000897"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HFN3325825.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHAKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            4058..5116
                     /locus_tag="ACHDOB_000898"
     CDS             4058..5116
                     /locus_tag="ACHDOB_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HFN3325826.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGMNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFF
                     APFLMLIMYYFFPVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            5160..6368
                     /gene="lysA"
                     /locus_tag="ACHDOB_000899"
     CDS             5160..6368
                     /gene="lysA"
                     /locus_tag="ACHDOB_000899"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HFN3325827.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKDECEPDLYNYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQAQESLCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFENQ
                     IALEEKFLKA"
     gene            6370..7137
                     /locus_tag="ACHDOB_000900"
     CDS             6370..7137
                     /locus_tag="ACHDOB_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HFN3325828.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYVIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKYLLKPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFASMIEFARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRKQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKELKCQI"
     gene            7125..8198
                     /gene="pheA"
                     /locus_tag="ACHDOB_000901"
     CDS             7125..8198
                     /gene="pheA"
                     /locus_tag="ACHDOB_000901"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HFN3325829.1"
                     /translation="MPNLEEFRNKIDTVDDKILELLNERMTYVKSIGELKQSSGGTIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSKIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            8188..9282
                     /gene="hisC"
                     /locus_tag="ACHDOB_000902"
     CDS             8188..9282
                     /gene="hisC"
                     /locus_tag="ACHDOB_000902"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HFN3325830.1"
                     /translation="MKFNEFLNHLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHDLNEFKKLYEAHKDEIKLIFLCL
                     PNNPLGECLDASEVTKFIKGVDEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIINAFYKLRAPFNVSNLALKAAVAAIDDDEFTK
                     KTLENNFSQMQLYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            9334..11016
                     /gene="fliF"
                     /locus_tag="ACHDOB_000903"
     CDS             9334..11016
                     /gene="fliF"
                     /locus_tag="ACHDOB_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HFN3325831.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            11016..12044
                     /gene="fliG"
                     /locus_tag="ACHDOB_000904"
     CDS             11016..12044
                     /gene="fliG"
                     /locus_tag="ACHDOB_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HFN3325832.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            12052..12882
                     /gene="fliH"
                     /locus_tag="ACHDOB_000905"
     CDS             12052..12882
                     /gene="fliH"
                     /locus_tag="ACHDOB_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HFN3325833.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENANISLNDEKAVEENQAIAPTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFAKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            12875..>14680
                     /gene="dxs"
                     /locus_tag="ACHDOB_000906"
     CDS             12875..>14680
                     /gene="dxs"
                     /locus_tag="ACHDOB_000906"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HFN3325834.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFACVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDAKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNPCEIKLGKAQWLVKNNSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKD"
BASE COUNT         5218 a         1895 c         2736 g         4831 t
ORIGIN      
        1 tttccactca aacttcttga actcgaactt gaaaaaaaca aatcttgttc ttttagggtg
       61 tttaaaaact cagcttttaa ctctttggaa gacgccaaat aaagataatc atttcctact
      121 aaatttaaaa gtttgtgatc ttgcttataa acaaatttat tttcatgttt taaaggtgtt
      181 agagttctta gattgtgatt ttgctctaga tcttgcaaaa ttttttcaag cttcattttt
      241 ttcctgtaaa tttaaaaatt taaagtatta ttttgccaaa atatttttaa aaaagaagtt
      301 ataatgcaaa atcaaatctt aaaaaatctc gatttaaaac acatttggca cccttgcaca
      361 caaatgaaag atcacgaaac cctaccttta attcctataa aaaaagcaaa aggtgtatgg
      421 ctttatgatt ttgatgataa agcttatatg gattgtgtga gttcttggtg ggtcaatctt
      481 tttggtcatt gtaatgaaaa aatcgcaaat gccattaaaa aacaagttga tgagctagag
      541 catgtgatct tagcaggctt tacacatgag cccattatca agctttctgc aagactttgc
      601 gaaaaagtag gcaggaattt taacaaatgt ttttatgcag ataatggatc aagtgctatt
      661 gaagtagcac ttaaaatgag ttttcattat catttaaata agggagtgaa aaaaagtaaa
      721 tttttatctt taagcaattc ttatcatggt gaaaccttag gagccttaag tgtgggcgat
      781 gtagcgcttt ataaagatac ttacaaagcc ttgcttttag agtgtttaag cacgcctgtg
      841 ccacaaggca aagactacac taaagagctt gaaattttaa aagatatttt agaaaaaaat
      901 gcaagtgaaa tttgtgcttt tatacttgaa cccttggtac aatgtgcagg aaatatgcat
      961 atgtatgaag caaggtttat tgatgaggcc ataaagcttt gccataaatt tggagtgcaa
     1021 gtgatttttg atgaaattgc agtgggcttt ggacgcacag gaactttgtt tgccttacat
     1081 caatgcaaac aaagccccga ttttatctgc ctttcaaaag ggataacggg tggatttatg
     1141 ccactttctg tagtgcttac aagagatgaa atttataatg ctttttatga tacttatgaa
     1201 agccaaaagg cttttttaca ttctcatagc tatacgggaa ataccttagc ttgcgcggca
     1261 gcaaatgcgg ttttagatat ctttgaggat gaaaatattt tagtaaaaaa tcaaatttta
     1321 agcgagttta tcaaaaaaga attttcaaga cttgaaaaat ttgacttttt gggtaatttt
     1381 agaacttgcg ggatgatcag tgcttttgat attttaagca ccaagtataa acgcgtagga
     1441 ctttttgtat ttcaaaaagc cttagaaaaa ggtttgcttt taagaccttt agcaaatacg
     1501 atttatttta tgcctcctta catcatcaca aaagaacaaa tcgtttatgt actagagagt
     1561 ttagagcaga tttttaagga attttaagtt gtaaaatttc ttgcatttgc tctttaaaat
     1621 ctttatttaa aatgctattt tcatcaaaaa aatcaagatt gattatagga atttttgcat
     1681 aattttttat aaaatcatct tgtaagatat cttttttacc catcattaca agggctaaaa
     1741 gattgatatt tctttgcttt aaagcttcaa tgctaagcaa gatatgatta atgcttccaa
     1801 gatagtattt tgctaccaaa atcgtagggt gtttgaaaat attcacaaaa tcaatcatag
     1861 tgtaattttc atccatagga gaaaaaagcc cacccgcaag ctcaataagt aggtttttgc
     1921 tttttggtaa aatgatatct aaggctttat aatcaagctt ttctttgatt tttccaagat
     1981 gaggagaagc tggagtttgc aaaaaaatac cttctttaaa aatctttgtt tttgggctaa
     2041 attttgcaat aaactcacta tctgttggag ttcctgcttg aatgagttta aaataatcat
     2101 agttaaaatt cgcacaaaaa gctgcactaa aatgtgtttt tcctacatca gtatgtattc
     2161 cactcacata aatttgcaca aaaaatcctt aagaaagaaa ttttaaacct actgtacaag
     2221 caataatcac agtgattaaa aaaagtttta aaaaactttt actttcttta taaaaaagta
     2281 ctcctatcat taccccacca gcagttccag ctcctgtcca tatagcataa gcaacactca
     2341 tagcgatatt ttgcatactt aaacttaaaa aagtaaaaga aaatccaaaa cacactatca
     2401 aagccaaaag gtaaagctta tttttagtgc ttacaagttc tttcatgatc accacgccaa
     2461 aaatttcaca agcagtagct aaaaacaaat aaaaccattc catatttaag cttccttgct
     2521 tatccattta agggctataa tgcttaaaag taaaatcact ataagcacaa gtttaattat
     2581 agaaacagcc tcgttaaaaa taaacatttc atttaaaacc accccaatag tgccaatgcc
     2641 tacaaaaaca ctataagtaa tacttacttc aagtctttca caagctttta aaaagcaagt
     2701 aaaagaaata caaaccccaa tggctgttaa aatatagtgc caaatttctg tagaatactt
     2761 aagtccactg acccaaaaac attctataat cccgcctaag attattaaaa accaagctat
     2821 attgatattg aatttttcat tcacatgaag ccttaaatta acataatatt tgtaaaacaa
     2881 attatatctt aaagaaatta aaagaagcta taaatttact tttccataag ccaaaattag
     2941 atataatcaa agctcatttt ttaagaaagg ataaaagatg ttagaaggta tcgttagaga
     3001 gagtatcggt agaaaagctg ctaaagcttt aaaaagagat ggttatctaa ttgcaaacat
     3061 ctatggaaaa ggattagaaa acatcaatgc cgcttttaaa gtaaatgagt ttattaagga
     3121 agttcgtaaa aaaactactt taatttttga tgtaaaagta ggttctcaaa ctttaagcgt
     3181 tgtagttgtg gattatcaaa aagatcctgt aactgcagaa cttaaacatg tggatttaaa
     3241 agttgcgcaa aaaggtgtga tttctaaata catggttcca gttaaaatca caggaacagc
     3301 tataggtctt aaaaataaag gtgttttaat tcaatcaaaa agaagattaa aagtaaaatg
     3361 tgcagctgaa aatttaccaa atttcttcga acttgatgta agtaaacttg atgtgggtga
     3421 tgctttactt gttcgtgata ttgtagttcc tgcgggagta actatgattg atgctgatag
     3481 agtagcggtt gtaggtgtag aaaaagctag atgattttag tcgtagggct tggcaatata
     3541 ggcgtagagt atgaaaatac ccgtcataat gtcggtttta tgctaattga cttactttta
     3601 aaagaaagca attttacaaa tcttacaaac tctaaattta aaggagagct ttttaaaata
     3661 ggttcttctt tacttcttct taaacctagt acttatatga ataattcagg acttagcgta
     3721 aaagcagtga atgattttta taaatgcgaa agaatgatag ttatccatga tgatatagat
     3781 ataaatttag gagccttgcg ctttaaaaaa ggcggttcaa gtggtggaca taatgggctt
     3841 aaaagcatag atactttatg tggaaatgac tatgaaagag tgcgtatagg agtgggaaag
     3901 ggtgaaaatg tgatttccca tgttttaggt aaatttaaat ccgaagaaga aataacttta
     3961 agcaaagttt tagagcatgc aaaaaaagct ttgcttgagc ttattgaaaa tgatgatttg
     4021 tctgctatat catccaaata cagcctaaag gcttaagatg tggatatttt ttcgttttat
     4081 ttcagggatt tatttaaaaa atttttttat tatatttttt tctttacttg gtttttattg
     4141 cggtattgat ttgctcttaa attttaaaga tctaccaaaa gccgcaaatc ttgatttgct
     4201 ttatgttatg tttttatctt tttcggcagt gccttatgta ttacccattt ctttgatttt
     4261 tgctttggta gtttctttga tttctatgat cagagcaaat gaatttgtaa gtctttatgc
     4321 gttaggactg agtagaaatt atgttatttt atttcctttt ttatgggctt tatttttttg
     4381 ttgtatttat ataggaatga attttacttc ttttgcttat gcaaatgatt ataagagaaa
     4441 tattttaaaa aatggcacta ttatgaatca aagtggagaa gtgtttttga aatttaacaa
     4501 taattttgtt tatatttcaa agataaacaa tggacaaaat agtgctcaaa atataaaaat
     4561 ttttaatatt aatgatttaa atttaagctc ttttgtaagt gctaaaaatg cccattttga
     4621 aggtgaaagt tggattttgc gagatggtaa tattacatta ttacctaaaa attatgaact
     4681 tgctaatgat ggtttaaaga tacaagattt ctccgagctt aaatcacttg agggttttaa
     4741 accaaagatt atagaagggg ttgctagtaa tagtgattat tcaatatctg acgcacttga
     4801 aagttttgag ctttttaagg cgcaaaatgt caatacagat gctcttaaaa tcaatcttta
     4861 taaatttgtt tttactcctt tttttgcacc atttttaatg cttattatgt attatttttt
     4921 tcctgtaata gcaagatttt ttaatcttgc ttttgtaact tttatagctt ttgtagtgac
     4981 tttgatgatt tggggagtct tgtttttgct tactagatta agcgaaaata gtgtgattgc
     5041 aagtgaaatt ggcattgtag tgcctattat aattttgggt tgtttaagtg cttatatgta
     5101 ttataagcat cgataaatta agctttgtgt agtaaaatta taaaaattaa aggttaaata
     5161 tggattataa acaattaaag caagaattta atactccttt ttatatttac aattttgatt
     5221 tcataaaaga gcgtttttta aatctcaaag aggcttttaa ggctagaaaa tctcaaattt
     5281 tttacgctgt aaaagccaat tcaaatttaa gtttgttgca aatgcttgca aatttagata
     5341 gtggatttga ttgtgtaagt ataggcgagg taaagcgtgc cttaaaagca ggagcaaaag
     5401 cttataagat tatttttagt ggagtaggaa aaaccaaaga agagttaaga caagctttag
     5461 aatatgatat tttatatatt aaccttgaaa gcgaagctga aatgatgctt ttagaaagtg
     5521 tggctaaaga acttaatcta aaggcaagaa tcagtattcg tgttaatcca aatgttgatg
     5581 caaaaactca tccttatatt tctacaggat taaatgaaaa taaatttggt gttgaaattg
     5641 atatagcaag aaaaatgtat ctttatgcaa aaaattcatc ttttttagag cctgttggag
     5701 tgcattttca tataggttcg caacttttag atatttctcc tattcatgaa gcagcaggca
     5761 ttgttgcaaa acttgtaaga gagttaaaag ccttgcaaat cgatcttaaa ttttttgata
     5821 taggcggtgg cttgggtgtg gcttatgaaa aagatgagtg cgaacctgat ctttataatt
     5881 atgcacaagg tatattagca caacttcatg ggcttgattt aaccatagga atggagcctg
     5941 gaaggtattt agttgctaaa agtggagaat ttgtttgttc agtactttat gaaaaacaaa
     6001 ataaaaccaa gcgttttgtt gtagtagatg gagcgatgaa tgatcttata cgcccaagtt
     6061 tatacgaggc ttatcatgaa ataatcttac cttataatca agctcaagag agtttatgtg
     6121 atgttgtagg tggaatttgt gagagtggag acttttttgc taaagcaagg tctttaccta
     6181 gcactcaaag tggcgatata atggttatta aaaatactgg agcttatggt tttagtatga
     6241 gtagtaacta caatactcgt aataaagttt gcgaattagc ccttgaagaa ggacaggtaa
     6301 gattgatccg tcaaagagaa aattttgaaa atcaaatcgc tttagaagag aaatttttaa
     6361 aggcttaaaa tgtttttttt agatgttcaa gggactttaa tttctgatca tgataagagt
     6421 ttaatccatg gcgctaaaga attgatcgat tttttaaatg caaaaaatct tccttatgtt
     6481 atcattacta acaatacaaa aaaacttgat tttttagaaa aattacagca aaaaggattg
     6541 gctataaaag aaaatgctta tattgatcct tttagcgttt taaaatacct tttaaaacct
     6601 tgtaaagttg cggcttttgg tgcagatgag tttgtaaaaa gtcttgaaaa tcttggtttt
     6661 gaactcgatt ttgtaaatcc tagtgctgtg cttgtagcta gttatgatga ttttaaattt
     6721 aaagattttg ctagtatgat agaatttgct agaagagaag ttaggtttat agctatgcac
     6781 gaaactagca tttataaaaa agatggtagg ccttatcctg gtgtaggtag cattatggct
     6841 atgcttaaaa atgctattga ttttgaatac gaggttgtgg gtaagcctag cattgctttt
     6901 tataaagaag ctttaaattt gataagaaaa caaaattcaa aaatcgattt tgaagatatt
     6961 aaaatcatta gtgatgattt tagaggagac ttgcttaagg caaaagaact tggcatgaaa
     7021 accttgctgg ttttaagcgg aaagataagc gacacaaaag ggcttgatac ggatttgctt
     7081 gatggagttt atcctagtgt ttttgagttt ttaaaggagc taaaatgcca aatttagaag
     7141 aatttagaaa taaaatcgat acggttgatg ataaaatttt agaactttta aatgaaagaa
     7201 tgacttatgt taaaagtata ggcgagctta aacaaagcag tgggggaact atttatcgtc
     7261 ccgagcgtga aagagccatt atcaatcgtt taaaaaatgc caatttagga cttttggatc
     7321 aaaatgccat agaggcaatc tatcaagaaa tttttgcggt ttcaagaaat ttagaaatgc
     7381 ctcaaactat agcttattta gggcctgagg gaacttatac tcatcaagca gcaagaagtc
     7441 gttttggtgc gatgagtcgt tatatagcct tggctaatat cgaagatgtt tttaaagagt
     7501 taagcaacaa agaagcaaaa tacggtgttg tgcctataga aaataatact gaaggtgcag
     7561 taggtattac tttagattgt ctaggtaagt ataatgagct taaaattttt ggtgaaattt
     7621 atatggatat tcatcattct tttgtgggga ttaatgaaaa tttaaaagaa atcaaacgca
     7681 tttattcgca tccgcaaggt tataatcaat gtcgtaaatt tttagaaagt catgaactta
     7741 gtgctataga atttgttcct tcaaaatcta cagctaatgc ggcttattta gcttcgcaag
     7801 ataaatatgc ggcagcaatt tgctctaaaa tagcggctaa gctttataat gtgcctgtgc
     7861 tttttgacaa aatagaagat aatgcagcca ataaaacaag atttttaatt ttaagcgata
     7921 ttaaaaatcc taaaatgcca aattgtaaaa cttctatttt agcacacaca gcacataaac
     7981 ctggtgggct tagtttttta ttagagcagt ttaaaaaaga aaatatcaat cttactaagc
     8041 ttgaatctcg tcctgtaaaa tcaaaagaat ttttacacag tttttacata gattttgaag
     8101 ggcatattga tgatgaaaat gtaaaaaaag ctttaaaaga tatacaagag attgtttggc
     8161 ttggatctta tttatcagga gaaaaagatg aaatttaatg aatttttaaa tcatttaagc
     8221 aattatgaac ccggaaaaga tatagaagtt attgccaaag aatatggcgt taaagaagtg
     8281 ataaaattag caagtaatga aaatcctttt ggtacgccac caaaagctat agaatgctta
     8341 agacaaaatg caaacaaagc tcatctttac cctgatgata gtatgataga acttaaaagc
     8401 acattggctc aaaaatacaa agttcaaaat gaaaatatca tcattggtgc aggtagtgat
     8461 caagtgattg aatttgctat acatgctaag ttaaattcta aaaatgcttt tttacaagct
     8521 ggagttacct ttgctatgta tgaaatttat gccaaacaat gcggtgcaaa gtgttataaa
     8581 actcaaagca ttactcatga tttaaatgag tttaaaaagc tttatgaagc acacaaagat
     8641 gaaattaaac tcattttctt gtgcttacca aataatcctt taggcgagtg tttggatgca
     8701 agtgaagtga ccaagtttat taaaggtgtg gatgaggatt gtttagttgt gattgatgca
     8761 gcttataatg aatttgcaag ttttaaagat agcaaaaaac atttagaacc ttgtgaattg
     8821 attaaagaat ttgacaatgt actttatttg ggaacttttt ctaaacttta tggattagga
     8881 ggcttacgca ttggttatgg tatagctaat gctaatatta ttaatgcatt ttacaagctt
     8941 cgtgctcctt ttaatgtgag caatcttgct ttaaaagcag cagttgcagc aatagatgat
     9001 gatgaattta ctaaaaaaac tttagaaaat aatttttctc aaatgcagct ttataaagaa
     9061 tttgccaaaa aacataatat caaaatcatt gatagttata caaatttcat cacttatttt
     9121 tttgatgaaa aaaatagtac agatttgtct gaaaaattgc ttaaaaaggg tataataata
     9181 agaaatttaa aaagctatgg tttaaatgct atacgcatta ctataggaac atcttatgaa
     9241 aatgaaaaat tttttacaga atttgataag attttaagat agataaatca aataaaaata
     9301 tgtaaaattc gctaaactaa gggatgagaa ttaatggatt ttaaaaatat gcttcatcaa
     9361 attgggcaac tttatcaaaa tttaactcgc aagcagcgta tagtgattgc tgcatctatt
     9421 gtagtagtgg ttgggttttt ggttttttta gctttatttc gtggaagtgg tagtaatgca
     9481 aataatggat atgcagtttt agttgaaaat gtaagcccaa gttcttctgc tgcaattgta
     9541 gctaaacttg aacaaaataa tattccctat aaattagaaa gtgaaaataa aattttagtt
     9601 ccacaagatc aggtttatcg tcaaagaatg tttattgcaa gcgaaggtct tataaaagat
     9661 agtcgcgtgg gttttgaagc ttttgatact caagcttttg gagctacaaa tgaagagcaa
     9721 agggtaaaat accaaagagc catagaaggc gaacttgcaa gaactattga gactttagaa
     9781 cctattcgta gcgctgttgt acacatagca tttcctaaag atagtgtttt tactgaaagg
     9841 caaattccgc ctacagcttc agttgttgtt aatgttcgcg aaggcttaaa gcttactaga
     9901 aaacaaattg atggtataaa aaatattgtt tcagcggcag ttccaaaact tactaaagaa
     9961 aatgttaaga ttagtgatca aagtggtgtg cctttagatg agcaagaagc atatgaagat
    10021 gacttggttc gtgcgcaaat taaatttaaa agtgatcaag aaaaagcttt agaagataag
    10081 attatagaaa atttagctcc ttttgcaggt ggtatggata aagtaaaagt gagtgtaaat
    10141 atagattttg atttttccaa gcaagaatct caaagtgaaa tttatgatcc aaatcctata
    10201 gtgcgtagtg agcaaacttt aaacgaggaa agaacaggta gaaaagatcc agaaattcaa
    10261 ggtgttccag gtgctgtttc taatataggt cctgttgaag gacttgacaa taaaggtcaa
    10321 attgacactt ataaaaaaaa tcaagttact acaaataatg aactttctaa aactattaca
    10381 aataccaaaa aacaatttgc aacagtttta cgcacttcag cagctgtcac tatagatgga
    10441 aaatatcaag atgtggttga tgaaaatggg gatgtgaaaa gcgaatatgt tccattgact
    10501 aaagaagagc ttgcaagtgt tgagagtata gttaaaaata ctattaattt tagcgctact
    10561 agaggcgata gtgttgtagt gcaaaattta ccatttcatc gtgagtcgat tagagttgag
    10621 agtaaagtta aaacttttta caatcgtttt gttgagccat ttattccacc agttaagtat
    10681 tttattgcag cgattttact ttttattttt tacaaaaaag tcattgctcc atttactcaa
    10741 aaaatgcttg aagatgtcgc agcgcaagaa gaaatgcagc aaggtccaaa tgctgtttta
    10801 gatgatgctg aagatgcttt ggagaaattt aatgcagcaa ggaaaaaagt tgaagaacaa
    10861 cttggttttg gggataattt taatgaagat tctattcaat atgaggtttt acttgaaaaa
    10921 ttgcgtggtt tagtaagtga taaaggcgag gaaattgcag cacttttaca aaacttaatt
    10981 caaaatgata gtgaatttgg cgaaaaggat atgtgatgat aaagctaagt gaagaacaaa
    11041 aaatggtcta tgatgattta tcgatgcctg agaaggtagc gatatttctt atacaacttg
    11101 gcgaagatgc aacaacttct gtgttttcac atatggaaat tgatgtaatt acagaaattt
    11161 cacgttatat tgctatggct aaaaatgttg atagatccgt agctactgca gttttagaag
    11221 aattttacac tctgcttcaa tcaaatcaat atattaaaag tggtggtttg gaatatgcta
    11281 aagaaatact ttttcgtact tttgggccag agattgcaaa taaaattctt gaaaaactca
    11341 ctaaaagtat ggagaataat caaaattttg cttatttggc gcaaattaaa ccacagcaac
    11401 ttgcagactt tattaccaaa gagcacccac aaaccatcgc tcttattttg gcacacatgg
    11461 attctattca tgcggcagaa actttagagt attttagtga tgaattaagg gctgaggtgg
    11521 ttataagaat ggcaaatctt ggcgatattt ctccaagtat tattaaaaga gtttctgcag
    11581 tgctagaaag caagcttgaa agtcttacct cttataaggt tgaagtgggc ggcccaagag
    11641 cggtagcaga agtgcttaat cgtttgggtc aaaaagcaag caaatcaacc attacttata
    11701 ttgaacaaag tgatgaacgc ttagcagaga ctattaaaga gcttatgttt actttcgatg
    11761 atatacaaaa acttagcact caagctataa gagaaatttt aaaagtagct gataagcgtg
    11821 atttaatgat aggtttaaaa ggtgcaagtg aagagttaaa gcaaaaattc ttagccaata
    11881 tgtctacgcg tgcaagcgaa gcttttcttg aagaaatggg ttttttgggt gctgtgcgtg
    11941 ttaaagatgt tgaagatgca caaagaaagg ttgttgaagt ggtgcaaaaa cttgcagaac
    12001 aaggtcttgt tcaaacaggc gatgcggatg aaatgataga gtaggtgaga gatggttaat
    12061 cgtagcaatg taatttctgg tggggcttct gatcagcatg ttgttgaagg atatcgtttt
    12121 aaagttattt cagaatttga taatcataca ggtgaaaaaa aacatactca aactccagat
    12181 gaagaaaatg ctaatatatc tttaaatgac gaaaaagcag ttgaagaaaa tcaagctatt
    12241 gcccctacgc aagctgttat ggaaactcaa attccaacat ttcaaccaag ttttgttgaa
    12301 gatttgctta aaaaaacaga tgaaatgtca agcaatatta ttaaacttca aatgcaaata
    12361 gaaagccaag agaatgaatt taataaccgc ttaaattcag aacttgaaaa tgctaaagaa
    12421 aaatttgcca aagaaggtta tgagaaagca aaagaagaat ttcaaaagga attgagtgat
    12481 tttaaagata agtatttaaa aagtatagcc aaactcgata atgcttgcga aaatcttgaa
    12541 aatttcatag aaaaaaatga gaaagaatta gcagatactg ctatagatat cgctaaagaa
    12601 gtaatcttaa aagagcttga actaaattca agtaagatag cttatgcttt ggccaaagat
    12661 ttaatcggcg agcttaaggg tgctagtgca attgagctta aggttaatgc agaggattat
    12721 gagtatttaa aagagcaatt tgatcagaat gctcatatta aaataagtct tgatgatgca
    12781 attagcaaag gaagtgttgt tattataagt gacgcaggca atatagaatc caatcttaac
    12841 tctcgtctaa ctaaaattaa aaaaatggtg aataatgagt aaaaaatttg cccatactca
    12901 agaagagtta gaaaagctaa gtttaaaaga attagaaaat ttagcagcat ctatgcgtga
    12961 aaaaatcata caagttgtga gtaaaaatgg tgggcattta agttcaaatt tgggtgctgt
    13021 agaacttagt atagcaatgc atttggtttt tgatgcaaaa aaagatcctt ttatttttga
    13081 tgtgtcgcat cagtcttata cacacaagct tttaagcgga aaagaagaaa tatttgatac
    13141 tttaagacaa atcaatggtt taagtggtta tacaaaacct agcgagggag attattttgt
    13201 agcagggcat tctagcacct ctatttcttt ggcagtaggt gcttgtaagg ccattgcttt
    13261 aaaaggtgaa aagcgtattc ctgttgcttt gattggagat ggtgctttaa gtgcgggtat
    13321 ggcctatgag gctttaaatg aattgggtga ttctaaattt gcttgcgtaa tacttttaaa
    13381 tgataatgaa atgagtattt caaaaccaat tggagcaatt tcaaagtatc tttctcaggc
    13441 tatggcaacg cagttttatc aaagttttaa aaagcgtatt gctaaaatgt tggatatatt
    13501 gcctgatagt gctacttata tggccaagcg ttttgaagag agttttaaac ttattactcc
    13561 tgggcttttg tttgaagaat tagggcttga atatataggg cctattgatg gacataattt
    13621 aggtgaaatt atttctgcat taaaacaagc aaaagctatg caaaagcctt gtgtgataca
    13681 tgctcaaacc ataaaaggta aaggctatgc tttagctgaa ggaaaacatg ctaaatggca
    13741 cggggtggga gcttttgata tagatagtgg agagagtgtt aaaaaaagtg atgctaaaaa
    13801 atctgctact gaaatttttt ctaagaattt gcttgattta gcctcaaaat atgaaaatat
    13861 tgttggggtt acagcggcta tgccaagtgg aacaggtctt gataagctta tagaaaaata
    13921 tccaaatcgt ttttgggatg tggctattgc agaacagcat gcagtaactt ctatggccgc
    13981 tatggcaaaa gaaggattta aaccttttat tgcaatatat agcacctttt tgcagcgtgc
    14041 ttatgatcaa gtgatccatg attgtgcgat tatgaattta aatgtggttt ttgctatgga
    14101 tagagcaggg atagtaggcg aagatgggga gacgcatcaa ggtgtttttg atcttagttt
    14161 tttagctcct ttgccaaatt tcactctttt agccccaaga gatgaacaaa tgatgcaaaa
    14221 tataatggag tatgcttatt tacatcaagg acctattgct tttcgttatc ctagagggag
    14281 ttttattttg gataaagaat ttaatccttg tgagataaaa cttggtaagg cacaatggct
    14341 tgtaaaaaat aatagtgaaa ttgctttttt aggttatgga caaggtgtgg caaaagcgtg
    14401 gcaagtctta agagccttgc aagaaatgaa taataatgct aatttgattg atttaatttt
    14461 tgctaaacct ttagatgaag agcttttgtg tgagcttgct aaaaaaagta aaatttggtt
    14521 tatttttagt gaaaatgtta aaattggcgg tatagaaagt ttaattaata attttttaca
    14581 aaaatatgat ttgcatgtaa aagttgttag ctttgaatat gaagacaaat ttattgaaca
    14641 tggaaaaaca agtgaggtgg aaaaaaatct agaaaaagat
//
LOCUS       DAZAND010000039        14211 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.039, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000039 DAZAND010000000
VERSION     DAZAND010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14211)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14211)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14211
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.039"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..1622)
                     /locus_tag="ACHDOB_000907"
     CDS             complement(<1..1622)
                     /locus_tag="ACHDOB_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325835.1"
                     /translation="MFETLLKLSEEPLKSKIKDLYFSKFNYVGAKIDFCITQNLGLLG
                     EINLLWAEAKQGKSELKKSFVQLVLTIGKYKFYTEQTPNLLCAFDGEKIAFLPFACLQ
                     EIFYQSDINFSVTPSNHTSEQFLKLLKELDSILNTAQIFYYEKNDEELKTFIKENLTS
                     ENISKIKIDKNNFVSIYHKWNKMVKDTISIDWNLAKKSGIIDADFYLADLLSSENETI
                     SQNLFAILKKDYYEFNKTKSDLGSIINERTSFKDNQKAHHEFWAIYERPPREEFWDYI
                     IKRRDLLVDQDVRERKGAFFTPRIWVDKACEYLSKTFGEDYEEGYYIWDLAGGTGNLL
                     ANFTNKKNIFCSTLDKADIDVIHERIKNGANLFENHVFQFDFLNDEFFDEVDDKGKII
                     QKSKLPLILQEILKDENKRKKLIIFINPPYAEAGNSSTMSGTGKHKTGVSLDNYVYKK
                     YKVILSSARNELFAQFFIRIYNEIEGAILASFSTLKYVNSTNFIKFRQAFKAKFLKGF
                     IVPAYTFDNVKGNFPIGFLIWNTSKKEDLKKI"
     gene            complement(1694..2434)
                     /gene="pstB"
                     /locus_tag="ACHDOB_000908"
     CDS             complement(1694..2434)
                     /gene="pstB"
                     /locus_tag="ACHDOB_000908"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HFN3325836.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            complement(2431..3519)
                     /gene="pstA"
                     /locus_tag="ACHDOB_000909"
     CDS             complement(2431..3519)
                     /gene="pstA"
                     /locus_tag="ACHDOB_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HFN3325837.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKTWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVIGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAQAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            complement(3516..4430)
                     /gene="pstC"
                     /locus_tag="ACHDOB_000910"
     CDS             complement(3516..4430)
                     /gene="pstC"
                     /locus_tag="ACHDOB_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HFN3325838.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            complement(4440..5435)
                     /gene="pstS"
                     /locus_tag="ACHDOB_000911"
     CDS             complement(4440..5435)
                     /gene="pstS"
                     /locus_tag="ACHDOB_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HFN3325839.1"
                     /translation="MKKILSLSVASLALCGALNAVDLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            5615..6118
                     /gene="ctf"
                     /locus_tag="ACHDOB_000912"
     CDS             5615..6118
                     /gene="ctf"
                     /locus_tag="ACHDOB_000912"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HFN3325840.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            6161..7537
                     /locus_tag="ACHDOB_000913"
     CDS             6161..7537
                     /locus_tag="ACHDOB_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HFN3325841.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPPNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGIPRTVANILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            7538..8548
                     /locus_tag="ACHDOB_000914"
     CDS             7538..8548
                     /locus_tag="ACHDOB_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HFN3325842.1"
                     /translation="MSVVRFFFILIMVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQESKSTDENLSKIDKVLNTLENDENTS
                     HKETNLTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            8535..9713
                     /locus_tag="ACHDOB_000915"
     CDS             8535..9713
                     /locus_tag="ACHDOB_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HFN3325843.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKTKGAKINLDTTLDKKNFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(9716..11086)
                     /locus_tag="ACHDOB_000916"
     CDS             complement(9716..11086)
                     /locus_tag="ACHDOB_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HFN3325844.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYK
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGGDKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMKELYSYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLAKQEGFVYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFLKY"
     gene            complement(11088..13013)
                     /locus_tag="ACHDOB_000917"
     CDS             complement(11088..13013)
                     /locus_tag="ACHDOB_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3325845.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYIFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKKLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALMNGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNAQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLTLKTMSKEKKTLTLLKNQAFECFKIAYSSILAHKLRSVLTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGRGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(13013..14185)
                     /locus_tag="ACHDOB_000918"
     CDS             complement(13013..14185)
                     /locus_tag="ACHDOB_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0042802 - identical protein binding
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HFN3325846.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIASKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVPNKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNENEELIVSSSADGLAPKVKLRF"
BASE COUNT         4859 a         2448 c         1856 g         5048 t
ORIGIN      
        1 tttatttttt taagatcttc ttttttactt gtattccata tcaaaaatcc tatggggaaa
       61 tttcctttta cattatcaaa agtataagca ggcactataa aaccttttaa aaacttagcc
      121 ttaaaagctt gtctaaattt tataaaattt gtagaattta catattttaa agtcgaaaaa
      181 ctagctagta tagctccttc gatttcatta taaattctta taaaaaattg cgcaaaaagt
      241 tcatttctag cactacttaa aataacttta tatttcttat aaacataatt atcaagacta
      301 acaccagttt tatgttttcc ggttccagac atagtagagc tatttccagc ttctgcataa
      361 ggtggattta taaagattat taattttttg cgtttatttt catcctttaa aatctcttgc
      421 aaaattaaag gtagttttga tttttggatg attttaccct tatcatccac ttcatcaaag
      481 aattcatcat ttaaaaaatc aaattgaaaa acatgatttt caaacaaatt cgcaccattt
      541 tttatacgct catgtatcac atctatatcg gctttatcaa gagtagagca aaagatattt
      601 tttttatttg taaaatttgc tagtaaattt cctgttccac ccgctaaatc ccatatataa
      661 tacccctctt cataatcctc cccaaaagtt ttagaaagat actcgcaagc cttatccacc
      721 caaattcttg gggtaaaaaa tgctcctttt cgctctctta catcttgatc tacaagcaaa
      781 tctctgcgtt ttataatata atcccaaaat tcttcccttg gaggacgctc ataaatcgcc
      841 caaaattcat gatgagcttt ttgattatct ttaaaagaag tgcgttcgtt aatgatagag
      901 cctaaatcac tttttgtttt attaaactca taataatctt ttttaagaat ggcaaataaa
      961 ttttgactga tggtttcatt ttcacttgaa agcaaatcag ccaaataaaa atcagcatct
     1021 atgatcccgc tttttttagc caaattccaa tcaatactga tagtatcttt aaccatttta
     1081 ttccatttat gataaatgct tacaaaattg tttttatcga ttttaatttt acttatattt
     1141 tcacttgtaa gattttcttt tatgaaagtt tttaattctt catcattttt ttcataataa
     1201 aaaatttgtg ctgtatttaa aatactatct aattctttta gaagttttaa aaattgctca
     1261 cttgtatgat tgctaggcgt tacactaaag tttatatcgc tttgataaaa aatttcttgc
     1321 aaacaagcaa agggtaaaaa agctatcttt tctccatcaa aagcacaaag taaatttgga
     1381 gtttgctctg tataaaattt atattttcct atggtaagca caagctgtac aaaagatttt
     1441 ttaagctcac tttttccttg tttagcttca gcccaaagca aattaatttc acctaaaagt
     1501 cctaaatttt gagtgataca aaaatcaatc ttagcaccta cataattaaa tttagaaaaa
     1561 tacaaatcct taatcttgct ttttaaaggt tcttcgctta gttttaaaag tgtttcaaac
     1621 aaaactatat ccttataaaa ttctttttta aggatataat tttaatacaa agatacttgt
     1681 ttttgtataa atctcaccca aaagcaccgc ttaaataagc cttggttttt tcttgttttg
     1741 gattttcaaa aaattcttta ctttcaccaa attctataag ctctccaaga tgaaaaaatg
     1801 ctgtataatc agctacgcgt ttgccttgtt gcatattatg cgtaaccatg atcatagaaa
     1861 gattatgact taattctttt aaaagctctt caatcacgcc tgaacttata ggatcaagtg
     1921 cagaagttgg ctcatctaaa agcaaaagtt taggtttgat cgctaaagct cttgcgatac
     1981 aaaggcgttg ttgttgtccg cctgaaagag ctagggcatt ttgctttaat ttatctttaa
     2041 cctcttcaaa aagccccact ttttgcaagc aatccaccac caaagcttct tcttcatctt
     2101 tgtttttaat cataccatga agttttggtg cataagagat gttttcataa atgcttttta
     2161 caaaaacatt aggttgttga aaaaccatgc ctacattttt acgcaaggct actacatctt
     2221 gatttttaac atcttttcct tcaatttcca ctaaaccatc gatttttgca attttatcat
     2281 tcattctatt aaaacaacgc aaaaaagtgg atttaccaca tcctgaagca ccgatgagtg
     2341 cagtaatttt gttttgctct atttgcatat tgatatcaaa taaagcttgt ttttttccat
     2401 aaaataaatt taaatttgtt gtttttgcta tcactttaat tttccttgaa aatattttct
     2461 taataatatt gcactaagat ttaacacgac taaaagtcct aaaagcacaa taatacccgc
     2521 tgctgttctt tctaaaaatg cacgctctgg catagccgac catgagtaaa tttgagcagg
     2581 taaaacgcta gttggatcaa aaatcgaact agctacatca gggataaatg ctatcatacc
     2641 gataatcatc aaaggtgcag tctcgcctat agcttgagct aaagttaaaa tagaacctgt
     2701 taaaatcata ggcatagcca aaggtaacat aatacctttt accatttgaa cctttgtcat
     2761 acctaaggca taagcagcat ttttcatatt gatatccaca ctttttaagg ccgctttggt
     2821 tgaaacaatg ataataggca aactcatgat cgccaaagta agcccaccca ctaaagcact
     2881 tgaacgaggc attccaaaaa gattgataaa cactccaagt cctaaaagtc caaacaagat
     2941 actaggaata cttgcaaggt tgttaataca cacttctata aaatgtgtaa ggatattttg
     3001 tggtgcaaat tcttctaagt aaattgccgc tgcaacgcct ataggaacac tcacaaccat
     3061 acaaacaagc ataacaagca aagtccctat aactgaagat aaaattcctg aattttcagg
     3121 agattttgag tccccattta aaaagaaatt gctattaaat ttaagctcta tctcgccttt
     3181 ttgcacaaga tcatcgacta aagttctttg tttttcacta aggcgattat atttttgctt
     3241 catatattga tctacttctg aatttgccaa aagccaagtt ttttcagtga tttgtcctgt
     3301 tcttattttt ctttgttctg cgcgagataa aagatcataa gcaggagaat ttctattagc
     3361 ctctacaaaa atataagttt gcttaaaagc aggaaatcca agataagcta cacttcctaa
     3421 aaagatacaa agaaaaatta aattaatata aagccccatt ttacaaagtc ttttaaaaga
     3481 ctttgaagct ttttgtcttt ttttaaaaag ttttttcata aatttttcct tttgtgaaag
     3541 cgattgataa gataaacgct aaacatattg atgattaaag tgatgacaaa aagcaccaaa
     3601 cctaaagaaa aagcacttaa agccaaagaa ctatcaaaag cttgatctcc acttaaagct
     3661 tctacgattt ttaccgttac cgttgtcata tcttctaaaa aatttaaagt taaatttgga
     3721 cgcaaagaag ctgccatcac cactatcata gtttcgccta aggctcttga aagtcctaaa
     3781 agacaagctg caactatacc aggaatagcc tcaggtaaaa tcacggcaaa aaccacttct
     3841 ttttttgtca tacctaaagc ataagcgcca ttaatccttt tctcgcttac tgcttcaatg
     3901 caatcttgag ataaagaagc cactataggt actatcatga tccccatgat aaaacctgcg
     3961 cctaaagcac tttgaaagct tgcttgtatg ccaaataaag aaaaaaacca cactataaaa
     4021 ggcgctacaa ctatagccgc aaaaaatcca aaaacaacag taggaatccc tgcaatgatt
     4081 tctaaaatag gttttaagta atttttagat tttttgccag caaaaacacc taaatatata
     4141 gcacacataa cccctaaagg taaagccgtt agcatagcaa tcaatgaaat ataaaaagtt
     4201 ccccaaaaaa gcgatagcgc cccaaaaaca ccttgtttac tcgtgccatc tgcattcata
     4261 aaagctgcat cagctgccca ctgacttgag aataaaaagg taacaacgct ttctttttga
     4321 aagaatttta aagcttcaat taaaattgta agcatgatag caaaacttac tatcacgctt
     4381 acaaaagcac ataaaaaaag tgcaaatttg attatttttt cttttaacaa agtttttcct
     4441 taaaaaactt ttccagcttt tacaagctca tcatttaaaa tttttctatc ttctacgtgt
     4501 ttttgagaag cttttaattt atcatcactc aaaggaacaa gtcctatttt ttcaagctct
     4561 ccaccacttt ttgccaaatc atcactcata taaatttttg caaaatcaaa ggcttctttt
     4621 ggatttttct tagcattgat ataaataaac aaacttcttg caagttcgta tttttcatct
     4681 gcgatgcttt cttcgcttgg cgtaacacca tctatattag cagcattgat tttgtctgaa
     4741 ttgctcacta aaaagctata accaaaaatt ccaaaagcat ccttatcaat agtaagtttt
     4801 gaaacgatta gattatcatt ttcaccactt gggatataag caccatcttg gcgtatggtt
     4861 ttatactcgc ctttatactc aggaattttt ttagacacat cactcattac aagctcttct
     4921 atagtatctc ttgttcctga acttgatggt ggaccataaa cactaatttt acgatttggt
     4981 aaatttttat tgatttgatt ccagtttgta taaggatttg gtataagttt tccattttgt
     5041 ggaatttctt ttgccaatgc taagaaaagt tctttttttg tgatatttaa tggagcattg
     5101 gttttatttt gagctaaaac tataccatca taacctatca tcatccctac tatatcagtt
     5161 acccctgctt ttttgcaagt ttcaaattcg cttaatttca taggtcttga agcattagaa
     5221 atatcagtag ttccttcaca aaatacctta aatccacccc ctgttcccaa gctctctact
     5281 ataggagttt ttgtattttt gatcgaagca tattcttcag ctacaaaaga agtaaaagga
     5341 tacacagtcg atgaacctgc gatttttaaa tctactgcat ttaaagcacc acaaagtgca
     5401 agacttgcca cacttaaaga tagaattttt ttcatttttt ctccttaact ttaaaaaagt
     5461 aatggaagtt taaaaaaact tggaaacatt ttggaaacat tttttatttt gtatttttct
     5521 taaatataat ttttaactat caaaaaattt agcttgtttt taaaaaaata atatatcatt
     5581 ataaaacatt ttaaatttta ataaggagat aagaatgctt tctaaagaag ttgtaaaatt
     5641 actcaatgaa caaataaaca aagaaatgta tgcagcaaac ttatatctta gtatgagttc
     5701 ttggtgctat gaaaacagtc ttgatggagc tggagccttc ttgtttgcac atgcaagcga
     5761 agaaagcgat catgctaaaa agcttatcac ttatcttaat gaaacagatt ctcatgtaga
     5821 gcttcaagaa gtaaaacagc ctgaacaaaa tttcaaatct ttacttgatg tttttgaaaa
     5881 aacctatgaa catgagcaat ttatcacaaa atcaatcaat actttagttg aacacatgct
     5941 aacacataaa gactattcta cttttaattt cttacaatgg tatgtaagcg aacaacacga
     6001 agaagaagca cttttccgcg gtatagttga caagattaag ttaatcggag aacacggaaa
     6061 tggactttat ttagctgatc aatacatcaa aaatattgca ttaagcagaa aaaaataatc
     6121 tttgccctac tatgggcaaa tctcgctttg gattgaaggt atgacttatt tttctctaga
     6181 atttagtatt ttaatgatag ctttttttgc tatttattgg acttttaaaa atgattacaa
     6241 aatacaaaat attttaattt taattttctc ttatattatt tatattttaa tcaatcctta
     6301 tttcgcctta gttttattta tatatacctt ttttatacac tattttgcct tgctaatttt
     6361 tgtgcgtcgc aagcgttata ttttcgctac ttgcatggct tttattattt taaatttatg
     6421 tttttttaaa tactttccta gtatcaaagg aagtgttgat gagatattaa attttttcgg
     6481 tttagaattt ttaaatattg atttagtatt accaatagga attagttttt atacctttac
     6541 ttctattact tatcttgtag aagtttatca aaaacgccgt ttagaaagtt ttttaaattt
     6601 agcaaccttc ttatcatttt ttccaacact actttcaggg cccattatgc gaagttcttt
     6661 tttctttgaa caggcctatc aaaaacgcga atttaaacat gcaaatttaa tcatcatctt
     6721 gcttgttttt ggtatagtta aaaaagtttt aatagccaat taccttggaa tttatgctaa
     6781 aagtatttta gactttccac aatcttataa tttcatacaa cttttaagcg caatttacgc
     6841 ctatgcaatt caaatatact gcgattttag cggatatgtt gatttagttt gtgcttttgc
     6901 tttaatgtta ggttttaccc ttccgcctaa ctttaacatg ccttatcttg caaaaaacct
     6961 aaaagatttt tgggctagat ggcatatcag tctttcaacc tttataagag attatatcta
     7021 tataccttta gggggcaata gaaaaggaat accacgcact gtagctaata tactcatcgc
     7081 ttttatactt tcaggtatgt ggcatggcaa tacacttgct tttattgttt ggggtttatt
     7141 gcatggtatt ggcatagttt ttatacattt gctagcttta agcaaattta gtttacaaaa
     7201 aattccagct ttaggaagat ttttaacctt tcaatttgta tgttttactt ggattttctt
     7261 ttattatagc aaaaatctag aagatgcaat agaatatttt aaagcttgtt attataattt
     7321 cttccaaatt ccatcttata acgatatcta tatgttggtt gcttttgggg ttctttttat
     7381 gatctatcct ttatttatta attttaaaga atattgcatt aagattttaa atcttactcc
     7441 atttttacta aaacctttta tcatagcttt tattttactt ttggtttttg cttttatgcc
     7501 agatggaatt cctgatttta tttattcgag tttttagatg agtgtagtta gatttttctt
     7561 cattttgatt atggtgcttg gcttggttgt tgtagttatg aatcagagca ttagctctta
     7621 tatagaacaa aaatatcatt ttgcattcta tcctcataat gatcttttaa aagaagccaa
     7681 tggcttcaaa attaaattag aacaaattcg tgcaatttta agcaacgaac ccttgcctca
     7741 aaccaatgaa gaaactacaa atcaagaaag taaatcaaca gatgaaaact taagtaaaat
     7801 agataaagtt ctaaacactt tagaaaatga tgaaaacact tctcataaag aaacaaatct
     7861 aaccttaatc caagatgcaa atattagttt tatcgacaat accaaattag agctacaaaa
     7921 tggagatgag tttttattta tcggagattc tttaatgcaa ggtgttgcaa tagccttaaa
     7981 tagagattta agaaatttaa atcttaaggt aaccgatctt agtaaacaaa atacaggcct
     8041 ttcttataaa tcctattttg actggtcaaa agccaccaat gaagctttta ttaaaaactc
     8101 aaatattaaa tatcttgttg ttcttcttgg cgctaatgat ccttgggata ttaaaaaagg
     8161 aggaaattac catcgttttg gctccccttc ttggatagat atttacacaa gtcgtgtaga
     8221 tgaaatcatt aaaatcgcta aaaaacataa agccaaagtt ttttggtttg aaatccctcc
     8281 tgtaaaaaaa gaagatttga acaaaaaaat acaagtgctc aataaaattt acagcgatga
     8341 aattcttaaa aataaagaaa tttttatcaa cactaagcta ttttttagtg tcaatgatga
     8401 atactcagct tatataaaag atgaaaacaa tagaagtata aaagtaagaa cagatgatgg
     8461 ggttcatttt actccaagtg gcgcaagaga aatgtctaaa cttttattag aacacataaa
     8521 acttaaggaa gaaaatgcta gtaaataaat ttaaaattat cttattgttt tttattattt
     8581 ttactagctc ttatgcacaa aatttaaata caaatgacac aatagattcc atactcaatc
     8641 aaaacaaaaa tcactctgct ttaacaagtt atgtattaaa aaaagatctt aaaaatctag
     8701 aaaaaaaatt agaaaaaaat caaaacatag gaattagaat ttatggagat tctcatatgg
     8761 cggctgattt ctttccgcgt gtcataagag gatatttaat ccgctctaac tctataggtt
     8821 ttgcctatcc tttacagcct aaatatcaac aaaatcttaa tcttgtttat tcttataaaa
     8881 actttgaaat tttaaactca agaaatcctg ctaatgctgg acataatttt ccattaggtg
     8941 ggataatagc caaagcaaaa actaaaggcg caaaaatcaa ccttgataca accctagata
     9001 aaaaaaattt caaaatagga tttttattta aagccaagca aaataccaat gcttttagca
     9061 tcaaagatgc aaaaaaccaa agctatgagt taagaactac acaaattaac aaatggtctt
     9121 ataaagaact agaacttgat cttcctttgc aaatttcagc cttacaaaaa gatgctgagc
     9181 taggaggata tttcatcaca aataaagata ataatgtttt cttagatacc attgcaatca
     9241 atggtgccaa aagtgattta tggctctctt ggaatcaaac agttgtaaaa aaagaactag
     9301 gacttttaca caatgattta attattcttg cctatggttc taatgatgca ctctttaaag
     9361 ggtttgaaaa acaaaaattc aaaaataatt taaaaaaatg gattagtatt ttaaaaactt
     9421 acaataaaaa cgctgttatc atgctaatct ctccaccaac tgtagttcaa aaacaaggta
     9481 aaaactacaa gcttgctcct gattttttta ccatacgcaa agcattatat gaagttgcta
     9541 aagaagaaaa aactcttatt tttgatatgc atcagtttat gcaagatagt gggggaaaaa
     9601 acaaatggat agaacaaaag ctttcgctca atgatgtaca tcttactata aaaggctatg
     9661 agctgatggc taaaaagtta ctcgaggatt taaaaaatat cattgattat taaatttaat
     9721 acttaagaaa ttctaagttt tcatcattaa aacttaaagc tgtgatttga tagtaagaat
     9781 taatggtttt taaaagatta aatctagctc ttaaaaattc ttgctgggta gaatttaaag
     9841 tattgtttgc atccaaataa tcttttaatt cactttttcc taaaatatat ttttcataat
     9901 acgccttagt gataagctct tgtttaatgt taatattttg caaattttgc aaaagcaagg
     9961 tgtcgctttg ataatcttta taattcaatg caaattcatt catcgcactt tgcaaggctt
    10021 gctcataaga aattaaaagt tgctcataag taaattgtga aattttgata ttttgcttta
    10081 ctctaccata atctaagaaa ggtaaagaaa tcttaacatt gccacttaaa atttcaaatt
    10141 taaaactatc atcgattttt ttatcacttc cgcttaatgc tccacctaaa gaaatactag
    10201 gcaaaataga tttttgcatg gaagaataat ccttaaaggc tgattttaag ctattgagtt
    10261 tagatctcac atctgcacgg tacgctaaag cttttaaagg tatattaaaa tcaggactta
    10321 aggttttaaa atcatttaaa gataaagttt taaaatactc tatgtaaaca aaaccttctt
    10381 gctttgccaa taaatcttgt aaatttttta tgagtaaatt acgattttga tcattgctta
    10441 ataaattttg tttagctctt aataagcttt gttctatgtt taaaagatct aattcttcta
    10501 tttttccaag cttgtattta taactataaa gctctttcat ttgttctaaa tttgaaagat
    10561 aagctcgaag caatttatct acatcgttaa aataagccag ctcaaaaaca tcatttaaag
    10621 ctgtattgat catgcttatt tttaaatttt caagatcata agcacttgct tttgcactaa
    10681 attcactcgc acttgcacta tctcttaatt ttccataaat atcaagctca tagcttaaat
    10741 ttaaagaatt attgaaattt ttactttgtt tgcctgaatt taaatcttta tctccaccaa
    10801 aacccaaatt tccacttaaa gtcggatata aatcataatc aatcaaatcg gctctagcca
    10861 aagctgaaag caaagttttt ctagctatat taatatcact attattcaat aaaacaaaat
    10921 ttagaaattc atttaatttt gcattatcat aggatttata ccaatcataa gtgagattta
    10981 aatctttcat ttgttcttga gttaaatcaa cttctttagg caagctaagt tttactccac
    11041 aagcactcaa gaaaaatgct aaaaaaatgc taagtattat tttcatatca ttcctttgat
    11101 aatgcactaa taggatttaa atttgctgca tttcttgcag ggaaaaaacc aaaaaccaca
    11161 ccgataaaca tagaacttaa aagtcccaaa agcacagaat aagcatttaa aatcatagga
    11221 aaatcagtac ttaaagtatt aaaagcaaaa ataacaaaaa tcgataaaat cacacctaaa
    11281 atcgccccta tagtacaaat cataaccgct tcgattaaaa actgcatcat aatatcttct
    11341 cttctagccc ctatagccat gcgtatgcct atttctcttg ttctttcact tacagaaaca
    11401 agcatgatat tcatcactcc tataccccca acaatcaaag caatcacagc cacacaagct
    11461 gtaagtatcg ttgtagtgcg tttatttgct gtaatagctt gcttaaaggt gtcagaatta
    11521 aaagtaaaaa aatccttttg tccgcgttta atttctaaaa ttcttatgat agcattttca
    11581 gccaaagttg aactcacatc atctttaacc ttaactatga tttcacgcaa atttctatct
    11641 cctgtaagct tattcatcag tgttgtatag ggtatataaa gacgcactac attatcttct
    11701 ataggcttgt ctgtatcttt ttgcaaaact cctataatct taaaaggttg agaattaaaa
    11761 agcaccacac gacctaaaat attttcactt ttttcatcag gaaaaagatt ttttttagca
    11821 ttaaaatcta gcacagcaac attggtacta ttttttacat catcattatt taaaattctt
    11881 cccgcatcta tccttaaacc ttctatagca aaattattta cccccactcc ttcagctctt
    11941 gcacttaaag aaatattggt ataagttgcc actcctgaag tatttgaatg agcatcaact
    12001 gcttctaaat attctaaaga tcttagcgtt tctaaatcac taaaattaag ccttgtttta
    12061 cctgaacgca aatctccaaa accccttcca ggacgaattt caatagtatt tgttccaagt
    12121 cttgcaatag actcaagcac cttagcttga gaacccaatc ctaaagctac aacgcaaact
    12181 acagaagcaa tacctatgat gattccaagc atagttaaaa cagaacgaag tttgtgtgca
    12241 agtatggaag aataagctat cttaaaacac tcaaaggctt gatttttaag caaagtaagt
    12301 gtttttttct ctttagacat tgtttttaaa gtgagttttt cttgagcttt ttccttttta
    12361 gtatcgctta aaatttctcc atctttaatc tctataaccc ttttagcttg tgctgcaatt
    12421 tttggatcgt gagttactaa gactatagta tggccttgtg cgttaagttt ttgtaaaatt
    12481 tcaagcacca taatgccgct tttactatcc aaagcccccg ttggctcatc agctaaaata
    12541 agctctccac cattcatcaa agctcttgct atagaaacgc gttgttgctg tcctccgctt
    12601 aattcatttg gtttagaatc taacttatga gctagttcta aatcatttaa aagtttttta
    12661 gcgttttgac ttctttcttg taattttttt cccgcataaa ctgcaggtaa agaaacattt
    12721 tctttagcgc taagcaagct taaaagatta tatctttgaa atataaagcc tattttttca
    12781 cgccttaatc ttgctttttc atcattatta agtttagtga cttcatattc atcaaaaata
    12841 taagttccac tacttggtgt atctaatgtt cctatgatat ttaaaagtga agttttacca
    12901 cttccacttt gtcctataat ggcaacaaat tcaccttttt ctatacttaa acttacattt
    12961 tttaaaatgg cattttcgcc tatatttttg caaatatttt taagaaaaat cattaaaatc
    13021 tcaacttcac tttaggagct aaaccatcag cacttgagct tactatcaat tcttcatttt
    13081 catttacgcc ttctaaaatt tgagtattga tagaatcttt aatgccaagt ttgacatatt
    13141 ttttaacagc tttttgattt tctaaaattt caacataata gccttttgga tcgcttttaa
    13201 ttgcataagt tggcactgct aaaacagcct ttgcacttgc tacaacaatt tcattttgta
    13261 tgctcatacc aatacgcaaa aaatcatctt tattaggtac ataaaatttt gcgtaataat
    13321 aaatagcatt tgatgagctt gagcttgaag aacttgaact tgatgagctt gagcttgtac
    13381 tagaatcact cacttcagta tcagctggat ctatacttgc aatcttagca tgataagttt
    13441 tttgaggatc attaagtaaa gaaaaatcaa gctctgttcc tacttttatc ttactcacat
    13501 cagcctctgc tatttccatt cttacttcca tttcgtctaa attagctata cggactatag
    13561 taggagtgtt ttgattagca ttaactgttt gtccttcatc tacagctaca ttaatcacaa
    13621 caccatccat aggagcagta atggttgtat aacctaaatc tttttgtgca tttttaagag
    13681 tgatttcaag ctgaactact tgagcattaa gctctgcaac attagctttt aaagtataat
    13741 aattattttt ttgagtttct aaattttcaa gagaacttgc tttagctgca taaagttttt
    13801 gctctctttg atactgctta ctcgcaatct caagagcaac ttttttactc tctaaattag
    13861 ccttagcact ttcaagctga gcttttgtaa tatctaaatc gttttgttgt ttatctttgt
    13921 caatttgagc gatcaaatca ccttgcttta catgagttcc cacatccaca taaagtttta
    13981 taatttgtcc gctaacttga gcacctacat cgacttgatc tttggcatat acctttccta
    14041 ctgcctctat ggtttgagat atatcttttt tttgtatttt ttgagttaaa tagctgattt
    14101 tttcatcatt attaaaaaaa ataaaataag ccccaacact tccaagtatt gcaattaaaa
    14161 tgattaaaac aatcttcttt ttcataataa caaatcctaa agaaaaatca a
//
LOCUS       DAZAND010000040        14091 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.040, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000040 DAZAND010000000
VERSION     DAZAND010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14091)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14091)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14091
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.040"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..767)
                     /locus_tag="ACHDOB_000919"
     CDS             complement(<1..767)
                     /locus_tag="ACHDOB_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325847.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDEDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLKLNWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFITTSKEGVANVNFKIISTSNGKILAAKNAELNL
                     TLKDQDAKQNYQDIVNQMPKMLASVIDNEIKKLKLTI"
     gene            complement(807..1571)
                     /locus_tag="ACHDOB_000920"
     CDS             complement(807..1571)
                     /locus_tag="ACHDOB_000920"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HFN3325848.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYNPLNYKSSPFICVSSRNFLQDFL"
     gene            complement(1652..2920)
                     /locus_tag="ACHDOB_000921"
     CDS             complement(1652..2920)
                     /locus_tag="ACHDOB_000921"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HFN3325849.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(3035..4210)
                     /locus_tag="ACHDOB_000922"
     CDS             complement(3035..4210)
                     /locus_tag="ACHDOB_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HFN3325850.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAVIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAIIVMSMIKFLSNSKK"
     gene            complement(4191..5027)
                     /locus_tag="ACHDOB_000923"
     CDS             complement(4191..5027)
                     /locus_tag="ACHDOB_000923"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HFN3325851.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLETSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLQERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(5029..7131)
                     /gene="topA"
                     /locus_tag="ACHDOB_000924"
     CDS             complement(5029..7131)
                     /gene="topA"
                     /locus_tag="ACHDOB_000924"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HFN3325852.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKNAIENALKNPRKLDMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEAYAISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAIENARKFIQTNFGKDYLPSKANVY
                     TTKAKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMNPAISQTQ
                     NVFVKNDRALFKISGRKILFDGYYKVYGDMDKDKILPNLKIGENLKIQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVKIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
     gene            7326..8597
                     /locus_tag="ACHDOB_000925"
     CDS             7326..8597
                     /locus_tag="ACHDOB_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3325853.1"
                     /translation="MNGKTYKFHPNDTKMDKKIIQITEKSGFKAAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     IDKFGKLKFILPAMVVWTISGVSGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIEAKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFSLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARARAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIVCIVFLFLKQKPRIN"
     gene            8680..9792
                     /locus_tag="ACHDOB_000926"
     CDS             8680..9792
                     /locus_tag="ACHDOB_000926"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325854.1"
                     /translation="MLKINNLNKKFGNNEILKNINLEIKEGEFLTLVGESGSGKSTLL
                     RIIAGLEEPSQGEILNLNNQDISKQNPRDRNFAMVFQSYALYPHLSVRENLAMPIKAR
                     AKFIHKLPLASFYIKSYKEFKTHLEEKIEQVATKLKITHLLDKKPKQLSGGQCQRVAL
                     GRAIIREPNIFLMDEPLSNLDAKLRIHTRAELSAMHRELNKTFIYVTHDQSEAMTMSD
                     RIAFLVDGELLQVASPDEMYNNPNHLKVAQFIGTPTINTLCVELKSYGFALINKNLSK
                     HKSLAIRAENCFIDPHSQIKAKIYNIENMGNEYLIYTKLLKNDNNFILSLNTQEGKKL
                     QLDSVVGINFDYSKAFIFDEEGKRMDIKLYNLSFAA"
     gene            9789..10646
                     /locus_tag="ACHDOB_000927"
     CDS             9789..10646
                     /locus_tag="ACHDOB_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HFN3325855.1"
                     /translation="MKNSLATFCFISPAVLLMLLFLILPIIWVIILSFSDYQLGNGDF
                     HFVGLINYKALLKDPVFFTSVKNTLIYALIVLPLSVLGGLALALLIESKNSAKSFYRA
                     VFFLPVMATLIAMSMVWEYILHPDIGIFNKILALFGVNTINWLSNKDTVLYTLAGIGV
                     WQQLGYNMILFTAGLMSIPTSVYEAAKLDGLNKTQILFKITLPLLLPILFFVLIISSI
                     KAFQVFDTVQVLTNGGPNHSSEVLLFTIYQEAFMFFRTNYASAISVIFLLFILILTLL
                     KIKFLDKKD"
     gene            10954..11463
                     /locus_tag="ACHDOB_000928"
     CDS             10954..11463
                     /locus_tag="ACHDOB_000928"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HFN3325856.1"
                     /translation="MLVIIVCSLLIPTQAICVPWYILMYYFGVLDSYLALILPFSISV
                     FGIFLIRQFINCIPNDIIYAARMDGLNEFSILCKIILPLTTPALISFGIFSIVAHWND
                     YFWPLIAVSSPQYFTPTLGVISFKNNEAGTDYGTLMAASTIVVAPLIIGFLLAQKRFI
                     QGIANTGIK"
     gene            11527..11802
                     /locus_tag="ACHDOB_000929"
     CDS             11527..11802
                     /locus_tag="ACHDOB_000929"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325857.1"
                     /translation="MKKIFFTLALFGALNLAQAKTELVVSYAYPWFKDLHEKLKEDFE
                     KQNPDIEIRFLAPAQNYEEQSARLLREKMINKLPDVSFNSYSYYLHW"
     gene            11796..12725
                     /locus_tag="ACHDOB_000930"
     CDS             11796..12725
                     /locus_tag="ACHDOB_000930"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HFN3325858.1"
                     /translation="MVNKNIPKDLTQNLINKKELGFNDNAFKATTLENKIYAIPFASS
                     LPVVYYNMDLVKQAEWNKELPKTWDELFDLAQKINSLNGKSGVYFGETDTWLILALSL
                     ERGGKLINEKGKVDFNNKAWQETFKLLSDFHTLAKMPAIKRSEAISSFYAGNLGILIQ
                     TSAALTQTEKSINFPLKLSKFPGVQSGGELPVGGSVVMLTNDKNKEAALKYIHFVTGE
                     ANAYVPQYTGYMTSNLLANAKLKDFYNKNPNYTIAPSQIELMGNWPSFPGDNALKATN
                     TLWNYAEKLLMGTSTNYEEIAKQAQEEINALLP"
     gene            12737..13345
                     /locus_tag="ACHDOB_000931"
     CDS             12737..13345
                     /locus_tag="ACHDOB_000931"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFN3325859.1"
                     /translation="MIFFDFDGVLVDSLKLWEQACQFSAKKLGFKGIFPQKPYAKLNP
                     VAHKEIGRILGFNPLEFEKIADEYFLEHIHTLVFFDKTKELLKDLSLDFKLSILSASN
                     ENLVRILLEKEQILKYFTNLHCTSSIPKAQTLKKFKQNHSIMIGDCISDIEAALEADV
                     YSIGVLWGWQDKIMLEKANILVNNHAQLKNAIRSFYEIHPFN"
     gene            13323..>14091
                     /locus_tag="ACHDOB_000932"
     CDS             13323..>14091
                     /locus_tag="ACHDOB_000932"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HFN3325860.1"
                     /translation="MKFIHLTDIHYGDKKEAIYSREPSAMMRLAIEDINKNHSDADFV
                     FITGDLTHKGSLESYTLLKQDLTKLNMPYYLILGNHDDRANALEIFNNLKQDENGFIQ
                     YEIQCNDNNVFLVLDTIKLKSHGGEYCQKRQIWLKNALERNQNKNIFICLHHAPFKTG
                     LRAMDFIGLDEKHSLELYKLFNSYKNIKHLFFGHYHSTLCGRWKDISFSSLKGINHQV
                     KFDLNSNEILLEFRNPEYAVVLLNNEVLNIHYNDFTFD"
BASE COUNT         4741 a         2304 c         2022 g         5024 t
ORIGIN      
        1 ttgatagtta attttaattt ttttatttca ttatctataa cactagctaa catttttggc
       61 atttgattta caatatcttg ataattttgt tttgcatctt gatcttttaa tgtcaaattt
      121 aattctgcat tttttgctgc aagaattttt ccattgcttg tagaaataat tttaaaatta
      181 acattagcca caccctcttt actagttgtg ataaaataat ttgtaatatt tacataaaaa
      241 tcttgcaaat ttaccaccac aacataatct gtaaatttgg catacatttt agccttatct
      301 ttttcttgtg ttaaaaaagg acttacattt ataagttttg catctttagg gctaaaatat
      361 gacaaagttt taggactttg ataaatacca tttgcagcag aattaaccca attaagcttt
      421 aagctttgaa tcaaattttt agcaaataat gtagaaaatt ccttatcact caccctaaaa
      481 ccatctaaaa aataaccaaa atttttccta gaagttaata caatagcaaa atcaatatcc
      541 tcatctttgg tgatttgcga ttttttttca attaaagtag aactatcaaa caatgctttt
      601 tgttgattta aatttggatt tgcaacattt tgatttagat ctattacttc aaagctatct
      661 gcgctttttt caattttaat aacctttttc tgagaaaaat tattcgctaa aagattagaa
      721 cttaaaacta aacttaaaaa caaaatgaaa caatacctca tcttcatcct tataaactat
      781 ttaaatataa aattatactc tttattttat aaaaaatctt gtaaaaaatt cctagatgaa
      841 acacaaataa aaggactgga tttataattt aaagggttat ataaaatgta ttttttagaa
      901 aaatccccca taaatcctcc attttgatta atcaaaaaat ctcctgctac aatatcccaa
      961 atattaagct tttcaaatct tttataaact cctgccctag cctctaaaat agcacaaaat
     1021 ttcaatccag agcctatatt aatagcttct aattgatgct cttttgcaaa gtcttcatct
     1081 tctttactaa gatgattaac actcaataag gctttatatt tatttttctc gtattcttgc
     1141 tggtcaattt gcaaaggttt atcgttttta taaaccttgg tttttgcatg agcatagaat
     1201 atatcacctt ttgatggatt ttgtataagc gataaaacag ggcgattgtc atgaactaaa
     1261 cttatcataa cgcaaaattc atcgctgcct tttaaaaaac cacttgttcc atcaagagga
     1321 tcgataagcc aaaaagtttt taattcttca cactcttctt tgctgagtaa tttttcttct
     1381 gataaaattt taatatccgt agaacctaaa atatcattta gaattttatt agaagcaaga
     1441 tctgctgatg taagcgggct tttatcttct ttttcccaag ttttgaaatt ttttctctct
     1501 tctaaaatag ctttagaagc ttgattgcta gcatttatag caatttctaa aaatttatca
     1561 agattaagca tgattataag actttctata agatttttta aaattataca agaagatttt
     1621 gtggaatttt taatttccac aaaaatttta attaaatttt actagtttca cccaaataaa
     1681 gttgtcttgg acggactatt ttaagacttt cttgctcttt ttgttctatc cactgagcta
     1741 tccatcctgg ggtgcgtcct ataacaaata aagtagcaaa catttcattt ggaataccta
     1801 aggcttttaa aataagtcca ctatgaaaat caacattcgg atatagccct ctttgaacaa
     1861 aataatcatc gcttaaagca atctcttcta tacgcgttgc tactttaata agattggtat
     1921 caatacccaa ctcatcaata agttgatcac gaagtttttt aagtactttt gctctaggat
     1981 caaaattttt ataaacccta tgcccaaagc ccatcaagcg gaaaggatcg tttttatctt
     2041 tagctctttt gatgaattca tctactctat caacactacc tatttgctca agcattctaa
     2101 taacaccttc attagctcca ccatgtgcat gaccccaaag cgcaccaata cctgctgcta
     2161 tacaggcata aggatgagca tgagttgaac ccacagcacg aaccgttgaa gttgaagcat
     2221 tttgctcatg atctgcatga agcataaaaa ctgtatcaag tgcttttact tctataggtt
     2281 taagctctac atgatcgtaa ggataagttc ttaacatata taagaaattt tctgtaaaac
     2341 cacgatctaa atttggataa gccataggaa agccgtgttt atatctataa gcggtggcga
     2401 ctatagtagg gattttagct actattctag ctgccatttc catatattct tcttttacat
     2461 tcatgtttaa atgatcagga taaaaagcac taagcgatga aacagcacct tgtaaaactg
     2521 ccataggatg agcattatca gggaaagaat caaaaagacg atgcatacct tcatggataa
     2581 aagaacgttt tttcatttca taacgaaatg cttcaagacg cgtagcatca ggtaattctt
     2641 tataaagcaa aagatgaacc acatctaaat aaagtttgtt ttcagcaagc cactctatag
     2701 gatagccacg gtgcattaaa attccgtttt ctccatcaat ataagtgatt tttgatttac
     2761 aagtagctgt agaagtcaag ccctcatcat aagaaaacat tcctgtttgt ttataaaaac
     2821 ttgacatatc tacaacgctt gggccagttg taccatcata tataggaaat tcatagcttt
     2881 ttccatttct attatcggtt atagtaacgg aatttgacat tttcgctcct tttattgtta
     2941 cttttattaa ttctaacaaa aaaggacgat tatgagtttt tttattatta aatttttaag
     3001 attttgtttg cttttttgag taaaaaagta actttcattt tttagaatta gaaagaaatt
     3061 taatcatact cataacaata atagcctcaa ataacgctgt taaaataagc gctgaataaa
     3121 gcttctcatc aataaccttg cccgaataac ccagagtagc tgttgctata agcaaggtta
     3181 aaggcataga atgactaaga ccaaataaaa tcatattttt aaaaccaatt ctttttaaaa
     3241 aaacacttgc acataaaatt cttaaaccca ccataacaaa cataagtaaa aatgcttgta
     3301 aaacgatttt ataatctaaa atcattttaa gatcaaaggt tgaacctata tggataaaaa
     3361 aaatagggat caaaaaccca tgtccaaaag tagaaagctt atgctcaaga tcttttttat
     3421 gatcaaaaaa agtagctata aatgagcctg ctataaaaga accaagaacg atttcaagtt
     3481 ttgtaataac catagcaaca atgatcagta taaaaatcgc catacaaaat cttatatctt
     3541 tttcattttt atcttcccat ggcataagca caactttaag ctgaggatac caccaaaaaa
     3601 gcacaccaag cattttaaat ccgagcaaac aaagtcccaa aaagatatta agatataaaa
     3661 tactttgcgc tacatcaata atacctgttc cttcgcgcaa aaaagctccc gctatagtca
     3721 aaagcacaat agaaatcacc tcagctaaag tagctactat catagcaata tttagccaat
     3781 aacactcttt tccaaaatcc ttaaaaagca aagataaaag ccctacactc atcacaggta
     3841 taatgataac aaatactaaa gaaagtccaa aaatccatac tataagagaa gataaagcgt
     3901 aaagtaaaaa aatataaaaa aaactttttt tggcgacttc tttatccata ttaaaaaagg
     3961 ctcttaaatt tacttccata cccgctataa acattagata ataaaaacct acattggcta
     4021 aaagtgcaaa attttcactt tttcctataa aaccaaaata tgcaatgacc gcacctaaaa
     4081 taatttcagt agctgaaaga ggcaagcgta aaatttttgc aatatgcgga gaaaaaagta
     4141 agcataaagc tataacaata agaattttta gatcaattaa accttgcgga tcaatgacac
     4201 tctgatgcaa aagtaaatcc catttctttt aattttatta tatcttgact tggttcttca
     4261 cctttagtgg ttaaataatc ccctataaca atagccccag cacctgcttg aaaaatttca
     4321 tactgccttt cttgcaatac cacttcacgc ccacctgcta ccattaccac gctttgaggc
     4381 aaagcctctt tggtgtcacg cacgattttt aaagcttcat cagcactaag ccttggaact
     4441 tgtagtttta aattttcatt ggctataaaa aaattaatag gtgttgaaaa aggctgtaat
     4501 tcttgcaaag attttctaaa acttagtcta tcttcttcac tctcacccat accataaatt
     4561 ccaccacaac aaagcataag tcctgcttct ttagcgttta aattggtttg aaatctactt
     4621 tcccaagtat gagtggtgca aatttgtgga aaaaattcct tagaagtttc aagattgtga
     4681 ttataagaaa aaattcctgc ttttttaagt tctttgagtt gttccacgct tgccatacca
     4741 ttacaggcaa ttaaaagcaa attaggcact tctttttgca cagccttagc agcctcacaa
     4801 acatactcaa gcttttcatc atcaagccca agtcctgctg taaccaaaca aaaacccaag
     4861 gcttcatttt tctttgccat tttcgcttct aaaacgattt gtgaaagttc tttgcgacga
     4921 tatttttgaa tatctgtttt tacatgggca ctttgggtac agtatttaca gtcttctgaa
     4981 caatttccac tcgctatatt tgaaatagca caaagcatga tttgcattct aatccttcat
     5041 ttcttttttg attttgcact ttaagcattc taggaatgta ccttttttaa gctcttttat
     5101 cactaaagtt tcgccacact cttcgcattt ttcttcactt ggtttgtatt tgcttataaa
     5161 attgcatttt ggataagcac tacagccata aaatttaccg cgttttgaaa agcgttctac
     5221 gatttcacct ttttgacaac ttggacaagt aatacctgta ccattagctt tagcttttgc
     5281 ggcagtattt tcgctttcat ttttactttc actttttaaa tttcttgaat acttacattt
     5341 tgggaaattt aaacacgcta caaattctcc aaaacgccct tttctaatag caagctcccc
     5401 gccacaatca ggacaacttt cacctagttt tgtgacagtt ttttgactag caatttttgt
     5461 ttttccttct tcgatttttc tcataaaagg atagtaaaat tcttttaaag tttcttgcca
     5521 atctgcctta tcttcagcga tttcatctaa agtattttca aggtttgaag taaatttact
     5581 atctactata tcgctaaaat ttttttcaag cacttcggtt acattaaaag caacatcact
     5641 aggaatgagt tgttttttgt ctatttttac ataatcacgg cttgtaagta tagaaattgt
     5701 tggtgcataa gtagaagggc gacctatgcc taaactttca agttttttta caagtcctgc
     5761 ttctgaatac cttgaaggtg gttcggtaaa atgtgagttc atttctaaat tttgtatttt
     5821 taaattttca cctattttaa gatttggtaa aattttatcc ttatccatat caccataaac
     5881 tttataatat ccatcaaaaa ggatttttct accgcttatt ttaaaaagtg ctctatcatt
     5941 ttttacaaat acattttgag tttgagagat agcaggattc atctgacaag ctaaaaagcg
     6001 attgtaaata agtgtgtaaa gttttaactc atctttgtct aaaaatttgg ccgcaatttc
     6061 tggagtaaaa cttaaatttg tagggcgtat agcttcatgg gcttcttgag cacctttagc
     6121 ctttgtagta tatacatttg ctttgcttgg aagatagtct ttgccaaaat ttgtttgtat
     6181 gaattttctt gcattttcta tagcttcttt ggctaaattt aaactatcgg ttctcatgta
     6241 ggtaataacc cccatcacgc cttcatgggt atttactccc tcatagagtt tttgagctat
     6301 catcatggtt tttttagggt taaaaccaag gcgattgcta gcactttgtt gcaaggttga
     6361 agtcataaaa ggaggtggtg gagcgatttt tctttctttg ctttcaatgt cgcttatagc
     6421 ataagcttca tttttacaag cctctagtat aagcttagca cgatctttgt tggtaatggt
     6481 aagtttttct atcttagctt tgtcaaactc aaccagttct gcatctaaat ctttttgaaa
     6541 aatcatatct atactaaagt attctagtgg cacaaaagca cgaatttctt tttcacgatc
     6601 gactatgatc tttaaagctg cactttgaac acgccctgcg ctaagccctc tttgaatttt
     6661 ttgtcctaat aaggggctga gtttatatcc tacaatgcga tctaaaaggc gtctagtttg
     6721 ctgagcattt acagagtgca tatctaattt tcttggattt tttaaagcat tttctatagc
     6781 gtttttagtg atttcatgaa aaacaatgcg tggtaaggtg ttttcatctt ttcctatagc
     6841 ttttgcaata tgataggcta tagcctctcc ttctctatcc tcatccgttg caagataaac
     6901 ttctttggca tctttggctt tgcttttaag ttctttaact aaggcgctat gatcacttgt
     6961 gattctatac tcagggataa attcatcatc ttctatttta atcccaaagc ttgatttagg
     7021 caaatctcta atatgtcctt tagaagcgat aacttcataa tcttttccca aaaaatttcc
     7081 tatggtttta gcttttgcag gagattctac tatgattaaa tttttcttca ttttgcaccc
     7141 ttgttaaata aaaagctgaa tttagctaaa aatatttaaa attctactta taaaatatat
     7201 tttaatcaag ctaaaatatt ttaaaaacaa aactatcata acaaaataaa taaaatataa
     7261 ttttaagtaa ttttaaatac aaaccataat ttttagagta taataaagca aaaaaggcaa
     7321 aaattatgaa tggcaaaact tataaatttc atccaaatga cacgaaaatg gataaaaaaa
     7381 taattcaaat tactgaaaag tccggattta aagcggctgt gttttctatg gccgctatga
     7441 ctatgctagg aagcgtggtc atttcatctg ctctgcctgc tatcaacaga cattttgaag
     7501 aacttttaac ccaaagtggc gctactcttg cttcaagttt cacattagcc catcttgata
     7561 tacttgttcg cttagtttta accatccctg ctatttttgt tgtcatttta tctccatttg
     7621 ctggtatttt aatagataaa tttggcaaat taaaattcat tcttccagct atggtggttt
     7681 ggactatttc tggagtaagt ggctttttct taaatgatat ttatgctata ctgacttcaa
     7741 gagctatttt tggtatggca actgctttta taatgacagg tgcttcggct ttacttggag
     7801 attattatag tcgtggtggc tttaatcgca gagaaaatgc tttaagtctt caaggatttt
     7861 tttgtgcggt agggggtgct gtttttattt ctattgcagg atttgtttcg agttattctt
     7921 ggcgttatcc ttttttagta tatggacttg gaattttaat taccttaatg gctatcattt
     7981 atctttttga acctagaaaa tttaaattct ataatcatac aaaaatagaa gcaaaaacaa
     8041 attattggca atttttccct atctatttta taggtttttt tatcatggta gtttattata
     8101 tttcgccaac tcaacttcct tactatatag aagaacattt aggattggat cctaaatata
     8161 taggtatttc gatgtctgta tctgcactat gttatggttt tttctctcta agctatagat
     8221 atattataaa attcttaagt attaaaacta tctatgtttt aactcttttt atcgtatctt
     8281 gttctttttc gctgcttttt ttagtagata gctttttcac agttttaatc gccttagctt
     8341 tgcttggaat gggcggaggt attatgcttg taaataatac ggcttatctt ttttcaatct
     8401 gtcctgaaaa tgctcgcgct agggcttatg gaattttagc aagttgtata tttttaggac
     8461 aatttttaag tcctattatc tctcaaccca tcgttagaca aatgggtctt gtagatgctt
     8521 ttttaatatg gtcaatagta atttttatag tgtgcattgt gtttttattt ttaaagcaaa
     8581 aacctaggat aaattaatct tcaagcattg catctgtttc caaaaagttt ccaatatttg
     8641 atttaatttt aaaaattttc caaaatatgg agcttggata tgttaaaaat taacaattta
     8701 aataagaaat ttgggaacaa tgaaatttta aaaaacatca atcttgaaat taaagagggt
     8761 gaatttttaa ccttagttgg agaaagcgga agtggcaaat caactcttct gagaattata
     8821 gccggccttg aagagccaag ccaaggtgaa attttaaacc ttaacaatca agatataagc
     8881 aaacaaaatc caagagatag aaattttgct atggtttttc aaagctatgc cttatatcct
     8941 cacttaagcg tgagagaaaa tcttgctatg cctattaaag caagagctaa atttatccat
     9001 aaacttcctc tggcttcttt ttatattaag tcctataaag agtttaaaac tcatttggaa
     9061 gaaaaaattg aacaagtagc aacaaaactt aaaattacac accttttaga taaaaaaccc
     9121 aaacaacttt ctggaggaca atgtcaaaga gtcgctctag gtagggctat tataagagaa
     9181 cctaatatat ttttaatgga tgaaccttta tcaaatttgg atgctaaatt acgcattcac
     9241 acaagagctg aattaagtgc tatgcataga gaattaaata aaacctttat atatgtcacg
     9301 cacgatcaaa gcgaagctat gactatgagc gacagaatag cttttttggt tgatggtgag
     9361 cttttgcaag ttgcaagccc tgatgaaatg tataataacc ccaaccattt aaaagttgct
     9421 caatttatag gaacacctac aatcaatacc ttatgcgttg aattaaaaag ctatggtttt
     9481 gctttaatca ataaaaactt atctaaacat aaaagtctag ccataagagc agaaaattgt
     9541 tttatagatc cacattcaca aattaaggcc aaaatttata atattgaaaa tatgggaaat
     9601 gaatatttaa tttataccaa actcttaaaa aatgataata attttatttt aagtttaaat
     9661 acacaagaag gtaaaaagct tcaactagac tctgttgtag gaattaactt tgattattca
     9721 aaagccttta tctttgatga agaaggtaaa agaatggata ttaaacttta taatttgagt
     9781 tttgcagcat gaaaaattca cttgcgactt tttgttttat ttctcctgct gttttattaa
     9841 tgcttttatt tttgatttta cctattatat gggtaattat tttaagtttt agtgactatc
     9901 agcttggaaa cggcgatttt cattttgtag gattgattaa ttataaagcc ttgctaaaag
     9961 atcctgtttt tttcacttca gtaaaaaata ctttaattta cgcccttatt gttctacctt
    10021 taagcgtttt gggaggtttg gctttagcct tgcttataga atctaaaaat agtgcaaaat
    10081 cattttatag agctgtcttt tttctacctg ttatggcaac cttgatagcc atgagcatgg
    10141 tttgggaata tattttacat ccggatatag gaatttttaa taaaattctt gctttatttg
    10201 gggttaatac aatcaattgg ctttcaaata aagacacagt tttatatact cttgctggga
    10261 ttggagtatg gcaacaactg ggctataata tgatcttatt tacagctgga ttaatgagca
    10321 tacctacttc ggtatatgaa gcagcaaaac tcgatggatt aaacaaaact caaattttat
    10381 ttaaaatcac cctacccttg cttttaccta ttttattttt tgttttaatt ataagttcta
    10441 taaaagcttt tcaagttttt gataccgttc aggttctaac aaatggaggg ccaaatcatt
    10501 ctagcgaggt tttattattt accatttatc aagaagcttt tatgtttttt agaacaaatt
    10561 atgcctcagc tatttctgta atatttttat tatttatttt gattttaact cttcttaaaa
    10621 ttaaattttt ggataaaaag gattgattta tgtttagaat tttgcgccat cttattttgg
    10681 gtatattgtc attatttttt atttttcctt ttgtatggat ggttataact agttttaaac
    10741 ctgaaaatga aattttttcc aatgcttttc attttttttc cacaaaattt taccctaatt
    10801 gaaaactaca caaaagcttt taaggaaaat gacttgttgc acttcctttt taatggattt
    10861 tttgtatgtt ttgccattct attaatacaa attataatcg cttatccttg tgcttatgct
    10921 ctatccaaat acaaatttaa aggacaaaag tttttgcttg ttattatagt gtgctctttg
    10981 cttattccaa ctcaagctat ttgcgttcct tggtatattt taatgtatta ttttggagtt
    11041 ttagattcat atctagctct tattttgcct tttagcattt cagtctttgg gattttttta
    11101 attaggcaat ttatcaattg tattcccaat gatataattt atgcagcaag aatggatggt
    11161 ttaaatgaat ttagtatact ttgcaaaatt atattaccac taaccacccc tgctttgatt
    11221 tcttttggaa ttttttccat agttgctcat tggaatgatt atttttggcc tttaattgct
    11281 gtaagttccc cacaatattt cactccaacc cttggagtaa tttcttttaa aaacaatgaa
    11341 gcaggtacgg attatggaac cttaatggcc gcctcaacaa tagtagtagc ccctcttata
    11401 ataggttttt tacttgcaca aaaaagattt atacaaggta ttgccaatac aggcataaaa
    11461 tagcttgtta aaacttatta gaattacatt attctaataa gttttaacaa ttttaaagga
    11521 tttaaaatga aaaaaatatt tttcacctta gctctttttg gagctttaaa tttagcccaa
    11581 gcaaaaacag aacttgttgt ttcttacgct tatccttggt ttaaagattt gcacgaaaaa
    11641 cttaaagaag attttgaaaa acaaaatcca gacatagaaa taagattttt agcacccgca
    11701 caaaactatg aagaacaaag tgctagactt ttaagagaaa aaatgatcaa caaactccct
    11761 gatgtaagct ttaacagcta tagctattac ctacattggt aaataaaaat attcctaaag
    11821 atttaacaca aaatcttatc aataaaaaag aattaggctt taatgataat gcttttaaag
    11881 caaccacttt agaaaacaaa atatatgcta ttccttttgc aagctcttta cctgttgtat
    11941 attataatat ggatttagtc aaacaagcag aatggaataa agaacttcct aaaacatggg
    12001 atgaactttt tgatttagct caaaaaatca actcattaaa tggaaaaagc ggggtgtatt
    12061 ttggagaaac agatacttgg cttatattgg ctttaagtct tgaaagaggc ggaaaactca
    12121 ttaatgaaaa aggcaaggta gattttaaca ataaagcatg gcaagaaact tttaaacttt
    12181 taagtgattt tcacacttta gcaaaaatgc cagctataaa acgctctgaa gctataagct
    12241 cattttatgc gggaaattta ggcatactta tacaaacctc agcagctcta actcaaacag
    12301 aaaaaagcat taactttcct ctaaaacttt ctaaatttcc aggtgttcaa tcaggaggag
    12361 aattacccgt aggtggatcc gtagttatgc taactaatga taaaaataaa gaggcagctt
    12421 taaaatatat tcattttgta acaggggaag ccaacgctta tgtacctcaa tatacaggtt
    12481 atatgactag caatttatta gccaatgcaa aattaaaaga tttttataat aaaaatccaa
    12541 attataccat tgctccttct caaatagaac tcatgggaaa ttggccttca tttccaggag
    12601 ataatgctct aaaagctaca aatactttat ggaattatgc tgaaaaactt cttatgggaa
    12661 caagtacaaa ttatgaagag attgcaaaac aagcccaaga agaaatcaat gctttattac
    12721 cttaaaaggg tataagatga tattttttga ttttgatggt gttttggttg atagtttaaa
    12781 actttgggag caagcttgtc aatttagtgc aaagaaattg ggttttaaag gaatatttcc
    12841 tcaaaaacct tatgcaaaat taaatcctgt tgctcacaaa gaaattggga gaattctagg
    12901 ttttaatcct ttagaatttg aaaaaatagc ggatgagtat tttttagaac acatccatac
    12961 tttagtcttt tttgataaaa caaaagaatt attaaaggat ttgagtttag attttaaact
    13021 ttccatatta agcgctagta atgaaaattt agttcgaatt ctccttgaaa aagaacaaat
    13081 tttgaaatat tttaccaatc ttcattgtac aagctcaata ccaaaagcac agacgctcaa
    13141 aaaatttaaa caaaatcact ctatcatgat aggtgattgt attagcgata tagaagctgc
    13201 actagaagct gatgtttatt ctataggagt gctatggggt tggcaagata aaatcatgct
    13261 cgaaaaagct aatatcttag tcaataatca tgctcaatta aaaaatgcta taaggagttt
    13321 ttatgaaatt catccattta actgatatac actatggtga taaaaaagaa gccatttact
    13381 caagagaacc atcagctatg atgcgtttag ctatagaaga tatcaataaa aatcatagcg
    13441 atgctgattt tgtatttata acaggagatt taactcacaa ggggagttta gaatcttaca
    13501 ctcttttaaa acaagattta accaaactta acatgcctta ttatttgatc ttaggcaatc
    13561 atgatgacag agctaatgca ttagagattt ttaataattt aaagcaagat gaaaatggtt
    13621 ttatacaata tgaaatacaa tgtaatgaca ataatgtttt tttagtacta gacactataa
    13681 aacttaaaag tcacggaggt gagtattgtc aaaaacgcca aatttggcta aaaaatgcct
    13741 tagagagaaa ccaaaacaaa aatatattta tttgcttaca tcatgctcct tttaaaactg
    13801 gccttagagc tatggatttt ataggacttg atgaaaaaca ctctttagaa ctttataagc
    13861 tatttaactc atataaaaat ataaaacact tattttttgg gcattatcat agcactcttt
    13921 gtggaagatg gaaagatatt tccttttctt ctcttaaagg catcaaccat caggttaaat
    13981 ttgatttaaa tagcaatgaa atattattag aatttagaaa tccagaatat gctgtcgttt
    14041 tactcaataa tgaagtttta aatattcatt acaatgattt tacttttgat a
//
LOCUS       DAZAND010000041        14067 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.041, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000041 DAZAND010000000
VERSION     DAZAND010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14067)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14067)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14067
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.041"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..314
                     /locus_tag="ACHDOB_000933"
     CDS             <1..314
                     /locus_tag="ACHDOB_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HFN3325861.1"
                     /translation="FQNDKITFIGKRKIPSYEVDQNSYVANFKISALQNINSDDLKVQ
                     ALLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQETVGFFSYELNA
                     Q"
     gene            311..2677
                     /locus_tag="ACHDOB_000934"
     CDS             311..2677
                     /locus_tag="ACHDOB_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HFN3325862.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKTFDLKINTYYEINL
                     SKQEILKEEIFKTKNSKIKLKSFELRALQCAFVMDEISHFVRKGLKPENIVVITPDES
                     FCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFVYKNQEDYFEDTQMI
                     FDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLALFLENEKQELVYLIRKELYFIK
                     DLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEE
                     FIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK
                     SRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFALSFSR
                     FNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYANNDFDIKV
                     FANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGT
                     DSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENANVGFYDLNSMQ
                     ILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEHCPYKLIYKKELK"
     gene            2674..5439
                     /locus_tag="ACHDOB_000935"
     CDS             2674..5439
                     /locus_tag="ACHDOB_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HFN3325863.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDVKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNLPKIPNPSKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDSLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQKI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCTLKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIVKRSEESVNGNYPSYFKGGFLNIYSQERGFLE
                     SKEQILSVKKESIQALQKFEKISPQEVQSEEKLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQMLTQRCKSKFRHFLDESDFEKLFKRIEILLKNTQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIIDYKTGLAMQDKHKEQVRTYKIAISEILKKDKVRAFIVYCLEN
                     EIQILEI"
     gene            5523..5948
                     /gene="rplM"
                     /locus_tag="ACHDOB_000936"
     CDS             5523..5948
                     /gene="rplM"
                     /locus_tag="ACHDOB_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HFN3325864.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            5951..6340
                     /gene="rpsI"
                     /locus_tag="ACHDOB_000937"
     CDS             5951..6340
                     /gene="rpsI"
                     /locus_tag="ACHDOB_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HFN3325865.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            6465..7424
                     /gene="cadF"
                     /locus_tag="ACHDOB_000938"
     CDS             6465..7424
                     /gene="cadF"
                     /locus_tag="ACHDOB_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HFN3325866.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRPAPQTKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            7424..8065
                     /locus_tag="ACHDOB_000939"
     CDS             7424..8065
                     /locus_tag="ACHDOB_000939"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFN3325867.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALACGYGNENELKAYSMVFLNAYEAVNYIARLN"
     gene            8158..11718
                     /gene="nifJ"
                     /locus_tag="ACHDOB_000940"
     CDS             8158..11718
                     /gene="nifJ"
                     /locus_tag="ACHDOB_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HFN3325868.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPERVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIVDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            11742..12053
                     /locus_tag="ACHDOB_000941"
     CDS             11742..12053
                     /locus_tag="ACHDOB_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HFN3325869.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKEIKFQYDNLEIAIQINKNDKINI
                     N"
     gene            12031..13443
                     /gene="mshL"
                     /locus_tag="ACHDOB_000942"
     CDS             12031..13443
                     /gene="mshL"
                     /locus_tag="ACHDOB_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HFN3325870.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNESHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKVTEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            13436..14043
                     /locus_tag="ACHDOB_000943"
                     /pseudo
     CDS             13436..14043
                     /locus_tag="ACHDOB_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
BASE COUNT         5194 a         1685 c         2499 g         4689 t
ORIGIN      
        1 attttcaaaa tgataaaatc acttttattg gtaaaagaaa aattcctagt tatgaagtgg
       61 atcaaaattc ctatgttgca aattttaaaa tttctgcatt acaaaatata aattctgatg
      121 atttaaaagt tcaagctctt cttacaagac cattcactaa aaattttgat caaaagttag
      181 aaggacaagt taaaaatgga attttaagta tcgctttacc taaactagat aaaggtagat
      241 gggagcttaa gctaaagttt tatgcaaatc aagaaacagt gggttttttt agctacgaat
      301 taaatgctca atgaaattaa gaatttttag ttcttcaaga caaattagag agtattataa
      361 ccaaaaaaaa cagcaaaatg ctttattaga tagtgctatt catataggtg aatttttaga
      421 taaagtttgt ttgagcaatt ttcataaggc aagttcttat gaaagtttgc ttttaatgca
      481 agaagcttgt ctaaaaagta aggatttaga aaaaaaacta ggaatttcgg tagaattttt
      541 tgcttttttg aaaaataacg aatatctttt ttcttttttt aaagaactta gtttagaaaa
      601 aaaaagcata gaagatctta aaaacaatga ttattatgct acctataatg aacatttgga
      661 aattttagat gaggtatata agaattatct tgctttgctt gaaaaaaatt ctttttatga
      721 tgatctttct ttacctaaaa attacactct taataaagat tttttagatg agtatgaagc
      781 tatagtttat gatttgcaag gttttttgag taaatttgaa gaaaatttat taagtgaaat
      841 ttctcagatt aaagaagtgg ttttaagttt taaaacaagt aaatttaatc ttgaatatct
      901 tttaaaactt gattttttaa aaacatttga tttaaaaata aacacttatt atgaaatcaa
      961 tctttcaaaa caagagattt taaaagaaga aatttttaaa acaaaaaatt caaaaattaa
     1021 actcaaatct tttgaattaa gggctttaca atgcgccttt gttatggatg aaatttcaca
     1081 ttttgtacgc aaaggtttaa agcctgaaaa tattgtagtt ataactccag atgaaagttt
     1141 ttgtgagttt ttaaggcttt ttgataaaga caatatgctt aattttgcaa gtgggattag
     1201 tattaaagaa agtttatttt atcaaaaatt tcaagcactt tatgaaagtg ctagtagtgc
     1261 ttcttttgtt tataaaaatc aagaggatta ttttgaagat acgcagatga tttttgatta
     1321 tcacaatacg cttttacatt ctttaaagct tgattttata gagtttaaaa agtattttga
     1381 tgagaaatgt gattttgaat attttgaaaa attacttgct ttatttttag aaaatgaaaa
     1441 gcaagagctt gtttatttga tacgaaaaga actttatttt attaaagatt tattgaaaaa
     1501 tcagtcttta actcttaaag agttgatcca tctttttttc atgcaaattt cacaactttc
     1561 ccttagtgat gtaggcggag gtaaggttac ggtaatggga cttttagaaa gtcgtgggct
     1621 ttgttttgat ggggtaattt tggttgattt taatgaagaa tttattccta aaagaagtgt
     1681 taatgaactt tttttaaaca atgaagtgcg taaaaaagca ggattgatta gctatgatag
     1741 aagagaaaat ttacaaagat tttattatga aagcttgatg aagaatgctt tagaagtaag
     1801 tatttgcttt gtggaaaatg aagaaaaaag caaatcacgt tttttagatg aacttgattt
     1861 tgactttttt tatgaaactc atatccatca aaaagcttat cttaatgctt taaaattaga
     1921 ctatgaaggc ataaaaccta atctaactcc tataaaagct cctattttaa agcataatcc
     1981 tttcgagttt gcgctttctt ttagtcgttt taatttattg gaaaatcaaa aaagaactta
     2041 ttattatcgt tatattttaa atttagcaga acctagggtt ttaagcgagg aaagcaaagc
     2101 gaaaaatcaa ggaaatttca tccataaaat gcttgaaatt tattataaaa attatgcaaa
     2161 taatgatttt gatataaaag tttttgcaaa tttattggat aaagaatatc aaaaatacaa
     2221 tattagcgaa cttgatcttg aagtatttaa attaaaattt atacaatttg ctaaaaatga
     2281 aaaagagcat ttttcaaaag gcttttatgt tgcacataca gagcttgagt taaataatat
     2341 tttaaagctc ggaacagata gtataaaact taagggcact atagatcgta tcgatagttc
     2401 aaaagaaggc aatttgatca ttgattataa aagtggaaaa gtaccaagta attcttatca
     2461 acttgctttt taccaagcct tatatgatga aaatgcaaac gtgggttttt atgatttaaa
     2521 tagtatgcaa atattgcatc aaaaagctaa aagtttagat gagctaagag aaagacttaa
     2581 agatttggtt cttatgagca aggaagaaat agagtttgaa aatgaacaag atgagcattg
     2641 tccttataaa ctcatttata aaaaggaatt aaaatgagtc aatttgagcc ttttttggca
     2701 ttagaagcga gtgcgggaag cggaaaaacc tttgccttga gtgtgcgttt tgtagcactt
     2761 attttaaaag gagctaggat taatgaaatt ttagctttaa cttttactaa aaaagctgct
     2821 aatgaaatgc aaaaaagaat tattgagact tttttaaatt tagaaaaaga aaataaaacc
     2881 agtgaatgca atgaactttg caagctttta ggtaaagata aagaagagct tatttcttta
     2941 agagatgtta aaaaagaaga atttttaaga acagagttaa aaatcagtac ttttgatgct
     3001 tttttcggaa aaattttgcg tgtttttgct ttaaatttgg gcttaagtag tgattttaca
     3061 atgagtgaag agagacttga tgtaagagag atttttttaa aacttcttaa aaaagatgaa
     3121 ttaaaagatt tggcttatta tattaattta gttgatgaga aagaaaattt ttttaacgag
     3181 cttgaaaaat tttatgagaa tgcttatttt caaaatcttc ctaaaattcc aaatccatct
     3241 aaagcttata tcaataaagc ctatagtgag ttaagaagtt attgtttggg tcttactcat
     3301 gtaaaaaatt ataaaaattt gtgtgacaat ttcaaaagtg aagttttaga tttatccgtg
     3361 tttatgcaat caagttttat gacaaaattt gaaagtacaa aatatttaca agatttagaa
     3421 agtactaact tgcattttag tgcaaaaaga atggagctta taaatgcttt aaatacctat
     3481 gccatagagc ttgaaaatta taaaattgct aatttaatga atcttttaaa tcattatagt
     3541 gaagctaaaa atatatttca taaagataaa aataccttaa atttccaaga tgtgagtaaa
     3601 aaagtttatg agttaataac cagtgaattt aaggatatga tttattttcg tttagatggt
     3661 tttatttcgc atttgcttat tgatgaattt caagatacaa gcgtgatcca atatcaaatt
     3721 ttacgccctt tgatcgctga gcttgtttca ggagaagggg ttaagaaaaa tcgcactttt
     3781 ttttatgtag gagataaaaa acaaagtatt tatcgctttc gtaaaggaaa aaaagaatta
     3841 tttgatttgt taaaacaaga atttagtcaa attaaaagtg atagtttaaa tactaattat
     3901 cgttctaaag agcttttggt tgattttgtt aatgaaactt ttaaagaaaa aatcaaagat
     3961 tataaagagc aatttgcctt agaaagtaaa aaaggcggtt ttgtgcgtat tgtggaatct
     4021 aaagaacaaa aggttaaaaa ccaagcccaa gaaatcaagg aaaagacttt agaaacttta
     4081 tttgagcaaa ttaatttttt aagatctaaa aatatttctt atgatgatat ttgtattttg
     4141 tgttggaaaa atagcgatgc agatatggtt ttggattttt taagagagca aaaaattcct
     4201 gcatttactc aaagtaatgt tttacttgaa aataaagcaa gcgtaaggct tgttttagaa
     4261 tatgctaaat attgtatttt tggtgatgag ttttacttgg tatttttaaa agaactttta
     4321 ggttttgagc cgagaaaaat cacccttgat ttttcaaaaa atgctatgga aaatgtactt
     4381 tttttaataa aggaattaaa acttgattta aatgatatcg ctttaataca atttatcgaa
     4441 tatgctaaaa ctaaggagaa ttttttaaag cttttatttg agccttgtac tttgaaaata
     4501 gtaagcgaac aaaatatggg aattagtatt atgagtgtgc ataaatctaa gggtttggaa
     4561 tttgatcatg tgattttgct tgatagttta tctaaaaaca attcaaacaa tgaagatatc
     4621 atgcttgaat atgatatcaa tcaaggttgg caactccata ttaaggataa aattcgagag
     4681 cttactaaag agcctattta tacccttttt aaagaaaata ttacaagagc aaattatgaa
     4741 gatgatatca ataaacttta tgtggctttt acaagagcta aggaaagttt gataatcgta
     4801 aaaagaagcg aagaaagtgt aaatggaaat tatccaagtt attttaaggg gggattttta
     4861 aatatatatt ctcaagagag aggtttttta gaaagcaaag agcaaatttt aagtgttaaa
     4921 aaagaaagta ttcaagcttt acaaaaattt gaaaaaatta gcccacaaga agttcaaagt
     4981 gaagaaaagc ttgatagtaa agagctatat tttggaaatg cttttcactt ttttatgcaa
     5041 aatttaaaac ttcctaaggg tgaaaatttt caaatgctta ctcaaagatg caagagcaaa
     5101 tttagacatt ttttggatga gagtgatttt gaaaagcttt ttaaaagaat tgaaatttta
     5161 cttaaaaata ctcaatttca aaatttgatt ggtgatggaa agcttttaaa agaacaagct
     5221 ttgagtttta atggagaaat taaacaatta gacttgcttg ccttaaaaga tgaagaagct
     5281 ttcataattg attataaaac aggtcttgct atgcaagata aacataaaga gcaagtaaga
     5341 acttataaga tcgccattag tgaaattttg aaaaaagata aagtgcgtgc ttttatagtt
     5401 tattgtttgg aaaatgaaat tcaaattttg gaaatataaa ctttattttt acttaaatta
     5461 agtaaaaatt aatattattt tttatacaat cacattttaa atttttggca aaggtaaaaa
     5521 ttatgacaaa gataacaaag ccaaacgaag taaaacgaga atggattgtt ttagacgcag
     5581 aaggcaaacg ctttggtcgt cttttaactg aagtagcaac aattttgaga ggtaaaaaca
     5641 agccttgctt tactccaaat gttgattgtg gtgattatgt aattatcatc aatgcttcaa
     5701 aagctgtatt tacaggtgct aataaagcag aagataagct ttatcataga cattcaggat
     5761 attttggaag tgtaaaaagc gaaaaatttg gtgatttact tgaaaaaaat cctgcaaaat
     5821 tatataaatt agcagttaga ggtatgcttc ctaaaacaaa tttgggcaga gctatgctta
     5881 aaaaattaaa aatctatgcg ggtagtgagc acccacacac tgcgcaaatt gctaaagaag
     5941 gaaaataatc atggcaacaa catacgcaac aggtaagaga aaaactgcta tcgcaaaggt
     6001 atgggtaaaa ccaggtagtg gtaaaattag tgttaatggt gttgatttaa acacttggct
     6061 tggtggacac gaggcgatta agcttaaagt ggttcaacct ttacttgtga ctaaacaaga
     6121 aacttcaatg gatattaaag caactacttt aggcgggggc tatagtgctc aagctgaagc
     6181 tttaaggcat ggaatttcaa gagctttagc agctatggat gctgatttta gagccttatt
     6241 aaaacctaaa ggacttctta ctagagatag tagaactgtt gagcgtaaaa aatatggacg
     6301 ccgcaaagca agaagaagtc cgcaattctc taaacgttaa tatttttggt gggattttcc
     6361 cacctttcta caatttttta taaaactcat ccttttttct gtcatttatg atataattgc
     6421 aaaatttaaa tttttatttt ataacacaat gaaaggtttt ttctatgaaa aaaatattct
     6481 tatgtttagg tttggcaagt gttttattcg gtgctgataa caatgtaaaa tttgaaatca
     6541 ctccaacttt aaactataat tactttgaag gtaatttaga tatggataat cgttatgcac
     6601 cagggattag acttggttat cattttgacg atttttggct tgatcaatta gaatttgggt
     6661 tagagcatta ttctgatgtt aaatatacaa atacaaataa aactacagat attacaagaa
     6721 cttatttgag tgctattaaa ggtattgatg tgggtgagaa attttatttc tatggtttag
     6781 caggtggagg atatgaagat ttttcaaatg ctgcttatga taataaaagc ggtggatttg
     6841 gacattatgg cgcgggtgta aaattccgtc ttagtgattc tttggcttta agacttgaaa
     6901 ctagagatca aattaatttt aatcatgcaa accataattg ggtttcaact ttaggtatta
     6961 gttttggttt tggtggcaaa aaggaaaaag ctgtagaaga agttgctgat actcgtccag
     7021 ctccacaaac aaaatgtcct gtagagccaa gagaaggtgc tttgttagat gaaaatggtt
     7081 gcgaaaaaac tatttctttg gaaggtcatt ttggttttga taaaactact ataaatccaa
     7141 cttttcaaga aaaaatcaaa gaaattgcaa aagttttaga tgaaaatgaa agatatgata
     7201 ctattcttga aggacataca gataatatcg gttcaagagc ttataatcaa aagctttctg
     7261 aaagacgtgc taaaagtgtt gctaatgaac ttgaaaaata tggtgtagaa aaaagtcgca
     7321 tcaaaacagt aggttatggt caagataatc ctcgctcaag caatgacact aaagaaggta
     7381 gagcggataa tagaagagtg gatgctaaat ttattttaag ataatgaata aaactatttt
     7441 atttgattta gatggcactt taattgattc tactgatgct attttaaatt ctttccaagg
     7501 agcttttaaa gcccttggat taacttctaa aaataatgaa gaaatcaaaa atctcatagg
     7561 ttatccttta gagcaaatgt ttagaatgct ttatccagat aaagtaaatt taagtaaaga
     7621 atttgtatta gcttatcgtg aaatttatgc acaaatttat ttagaacaaa ctactctttt
     7681 gcctaaagca aaagaagcat tagaacttgg aagcgaaatt gcagatcttg gtatagttac
     7741 aacaaaagga ggtaaattta ctccgatttt acttgattat ttgggagtta aaaaattctt
     7801 taaaacttta attactcttg aagatgtcac aaatccaaag ccaagttccg aacctataat
     7861 tttagcctta aaaagactca ataaaactca agaaaatgcc tatatgatag gcgatacaat
     7921 actagatatt caagctgcaa tttctgctaa tatcactcct ttggccttag cttgtggcta
     7981 tggcaatgaa aatgaattaa aagcctattc tatggtattt ttaaatgcat atgaggctgt
     8041 taattatata gctagattaa actaatttca agttttcgtt aaacgccttt taagagaatt
     8101 tatagtaaat tgatagctaa aaaattataa aaattatcaa tataaaggaa ggtctcaatg
     8161 ggtaaaatta tgaaaactat ggacggaaat gaggctgctg catacgctgc gtatgctttt
     8221 actgaagttg ctggaattta tcctattaca cctagttctc ctatggctga ttacaccgat
     8281 atgtgggcag ctgcaggcaa aaaaaatctt tttggagttc ctgtaaaaat cgtagaaatg
     8341 caaagtgaag caggagctgc aggtagtgtg catggatctt tacaagctgg ggctttgacg
     8401 acaacttata cagcttctca aggattactc cttaaaattc caaatatgta taaaatagca
     8461 ggtcaattac tcccctgtgt aatccacgta gcagcgcgtt ctttggctgc tcaagctttg
     8521 tctatctttg gtgatcatca agatatttat gcagcaagac aaattggttt tgctatgctt
     8581 tgttcgcatt ctgtgcaaga aaccatggac ttagctggtg tagcacattt agctgcgatt
     8641 aagggaagag tgccattttt acattttttt gatggtttta gaacaagcca tgaaattcaa
     8701 aaagttgaag tgatggatta tgcgcatttt gatagattat tagatagaga agctttgctt
     8761 gaatttagaa ataatgcttt aaatccagaa aatccaaaaa cacgcggaac ggcacaaaat
     8821 gatgatattt attttcaaac tagagaagta agcaatcgtt tttatgatgc tttgcctgat
     8881 gttgttaatg aatatatgca agaaatttca aaaattacag gtagagaata caagccattt
     8941 acttattatg gtcacaaaga gccagagcgt gtgattgttg ctatgggttc tgtaactcaa
     9001 gcacttgaag aggtagtgga ctatcttaat gctaagggtg aaaaagtagg gattttaaaa
     9061 gtttatcttt atcgcccatt tagtttaaaa tatttctttg atgttatgcc aaaatcagtg
     9121 aaaaaaattg cagttttaga tagaaccaaa gaaccaggaa gtcttgggga accactttat
     9181 cttgatgtaa aatcagcttt ctatggaaga gaaaatgctc ctgttatagt aggtggaaga
     9241 tacggacttt cttcaaagga tgttgatcct gctcaaatga tagcagtatt tgaaaatctt
     9301 aaacttgata atccaaaaga tggctttact gtaggtatag ttgatgatgt aactcatact
     9361 tcactgagta ctggagagaa aatttcactt ggagatgaaa gtacgatcga atgtttattt
     9421 tacggacttg gtgctgatgg aactgtgggt gcaaataaaa actcgattaa aatcatcggg
     9481 gataaaacgg atttttacgc tcaagcttat tttgcttatg attctaaaaa atcagggggt
     9541 tatacaagaa gccatttaag attttctaaa aaacctatcc gttcaactta tcttgtttca
     9601 actccgcatt ttatcgcttg ttcggtagcg gcttatttgg aaatttatga tgttttagca
     9661 ggaattcgca aaggaggaac tttcctttta aatagtattt ggaatgctga agaaaccata
     9721 agacaacttc cagatgcagt aaagaaaact ttagctgaaa aagaagtaaa tttttatatc
     9781 atcaatgcaa ccaaactagc tcgtgatata ggtttgggaa atcgtacaaa taccattatg
     9841 caatcagcct ttttcaaact tgcaaaaatc attccttatg aagacgcaca aaaatacatg
     9901 aaagagcttg cgtataaatc ttatagtaaa aaaggcgatg ctattgtaga aatgaattac
     9961 aaagctattg atgtgggggc tgatggactt gtaaaagttg aagtggatcc aaattggaaa
    10021 aatttagagc ttaaagaaaa agaacaaacc aatgcctata aaggcactga atttgttgaa
    10081 aaaatcgtaa aacctatgaa cgcagctaag ggtgatgatt tacctgtttc agctttttta
    10141 ggttatgaag atggaagttt tgaacacggc acaaccgaat acgaaaaacg cggtgttggg
    10201 gttatggtac caagatggat agaggcaaat tgtattcaat gtaatcaatg cgcttcagtt
    10261 tgtccacatg ctgttatcag gccatttttg attaatgatg aagaaatggc aaatgcacct
    10321 cgtggagtaa aagatcatgc tttagaagct aaaggaacca aaggagaaaa attaagcttt
    10381 aaaatccaag tttctccact tgattgtaca ggctgtgagc tttgtgttca tgagtgtcct
    10441 actaaagaaa aatctttggt tatggtacca cttcaagaag agatggattt tggtgagcaa
    10501 gaaaatgcgg attatttatt taaagaaatt acttataaag atgatatttt aaataaagaa
    10561 accacaaaag gagcacaatt tgcccaacct ttatttgaat tccatggggc atgtcctgga
    10621 tgtggggaaa ctccttatat tactttaatt acaagattgt tcggtgaaag aatgattgtg
    10681 gctaatgcga caggttgtag ttctatttat gggggttcag ctccatcaac tccttataga
    10741 aaaagtgtga aaaatggaca cggtcctgct tggggaaatt cactttttga agacaatgct
    10801 gagtttggtt tgggtatgaa aattgcaact gaaaacacaa gacaccgcat tgaacatatc
    10861 atgaatgaaa gtatgcaaga agttccaaat gctttatcag ccctttttaa agattggatt
    10921 gcaaataaag acaatggtgc tatgtctgtg gaaattaaag ataaaatgat ccctatttta
    10981 gagcaaaata aaaatattaa agccgtacaa gatatattag agcttaaaca gtatttaagt
    11041 aaaaaatctc actggatttt tggtggtgat ggttgggctt atgatatagg ctatggcgga
    11101 cttgatcatg ttttagcaag tggagaaaat gtaaatattt tagtgcttga tacagaagtt
    11161 tattctaata caggcggtca aagttcaaaa tcttctagaa caggagctgt agcacagttt
    11221 gcagcagcag gcaaacctat acagaaaaaa gatctaggtc aaattgctat gacttatggt
    11281 tatatttttg tagcacaagt aaattcaacg gcaaattata ctcatcttat caaagctatc
    11341 actgcagctg aggcctatga tggaccatct ttggtgattt gttattctcc ttgtatagct
    11401 catggtatta aaggtgggct tggttattca ggagagcaag gtgagcttgc tacaaaatgt
    11461 ggttattggc cactttatac ctttgatcct cgtttagaag agcaaggaaa aaatccttta
    11521 actctaacag gaaaagaacc tgattgggat ttatatgagc aatttttgat gaatgaagtg
    11581 cgttataatt cacttaaaaa agcaaatcct gaacacgctg ctgagctttt tgaacgcaat
    11641 aaaaaagacg ctcaacgtcg ctatagacag cttaagcgta tcgctatggc tgattatagc
    11701 aatgaggttg aaagctgata aaatatattt ttagtgctac attgtgtttt agcactttgt
    11761 ttgcacaaga taattttgaa gagtacttta aacttataga taaagaaaat cgcataaatt
    11821 ttaatactct tcaaaaccca tttgtgaatc ctacttttga aaaattaaga catattaaaa
    11881 ttactgcaat tatgcttgat aaagtaaaaa tttatgatcg atggtataaa aaaggtgata
    11941 tgattgatga tgctataata catgaaataa atactaaaga gattaaattc caatatgata
    12001 atttagaaat tgcaatccaa ataaataaaa atgataagat taatattaat taacattctt
    12061 ttttgccatt atctttatgc tttagattgt caaaagcgtc tttttgatat cagtattaat
    12121 gaaaaattaa gcatacaaga aagtcttgat gagcttgcaa aatattgttc ttttagtatt
    12181 attgttaaag ataaaattgc caaagaaaaa ttagaaacat tgcaaaactc tgtcaatatt
    12241 catcaaatga gtttagacga aatttttaat ttttttatca aagagcatga tcttagctat
    12301 gattttgatg gtaaaatttt aagaatttca ggcattaata cgaagatttt taagataagt
    12361 tatatcactt ctatcagaga aggacaaagc ataactaaag cgtctgtaga cgctaaacca
    12421 aggcaaagtg aatatagcgg tagttttgat gacgcagaag acaatatgat taaaagtatg
    12481 gaaaaatttg atttttggca aaatatagaa aaagagatta ttgtattatt aaaaaattct
    12541 catgaagatt atgaggctaa aactcccatt ataaatccca atgcaggtct tattatagta
    12601 actggaacaa attctcagtt aaaaagtgtg aaaaattatt tgcaaaaact agaaaatcgt
    12661 cttaaaaaac aagttattat cgatgttagc atacttgctg tgagtttaaa tgaaagtcat
    12721 tctagtggga ttaattggca aaattttaat ataggtttaa attcgcaagt aaataatgaa
    12781 aattctttta ttcagtttca aaatgggcaa ggttttgtta agaatttggg tttaagggcg
    12841 aatttaaatt ttgattctat tattaacttc ctttctcaaa atggaaaaac tagcgtgctt
    12901 tctaatccaa agcttatggc tttaaataac caacaagcca ttatttctgt aggcgatact
    12961 ataaattatc aagttaaaga aagttctaaa ggcactgaaa atgggactac tgttagtgaa
    13021 agttataata attattctat ttttgtaggc attttactca atatcttgcc tgaaatttct
    13081 gatgatggaa aaataatgct taggattaat ccaagcttaa gtgattttaa gtatccagaa
    13141 gataataaac gacaaaaaga accaagaact attgctcctg ataccataca aaaaaagctt
    13201 tctagtgttg tgcaagtaga gaataatcaa actttaattt taggcggatt gatttctcac
    13261 gataaatcta atgagaaaaa ttctatcaat tttctatcaa aaattccaat cctaggttct
    13321 ttgtttaaag gagaagtttt aaattctaaa gtaaccgaaa ttgtttttat tatcactcca
    13381 agtatagtag atagtgtaaa cgctccaagt cttaaagatc taggatttaa gcattatgag
    13441 taaaattatt ccatttagag aagaaatttt tcatcaaatc aatcaaattt tagaaagcca
    13501 aaaagctttt atttttttat ggggaaaaag tggtagtggt aaaagtgtat tgttgcaaag
    13561 attggcaaaa aaatataatg ttgattttat taatgaaaat tttaaagatc agagtttctt
    13621 aaaagaaaaa attgagtttt tgatttcaca aggtcagagt ttaatcattc ttgatgaagt
    13681 aggaatgtat gattatgcaa tgctagaaag cattaggatt tatagtgatt ctataagttt
    13741 tgttttaagt tctcataaaa agttaaatat actaaaaaag agcattttaa aagtcgttta
    13801 agtgcttgtt ttgaattgaa aaatattagt cttttagagc ttgatgatta tattaaattg
    13861 aaattcggaa tgaatttttc aaataaatgt cttaagtttt tacaaaaaat ttctcaagga
    13921 aatttaagat atattgataa aactttaaaa agtttttatg agataaatag tttttttgat
    13981 aaaaataaaa gtcaagagta tattttaaag cttagtgctt tagagaatgg cttattaagg
    14041 taagatatgc aagaaagaat taaagag
//
LOCUS       DAZAND010000042        13931 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.042, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000042 DAZAND010000000
VERSION     DAZAND010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13931
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.042"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..374)
                     /locus_tag="ACHDOB_000944"
     CDS             complement(<1..374)
                     /locus_tag="ACHDOB_000944"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HFN3325871.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIR"
     gene            complement(375..1094)
                     /locus_tag="ACHDOB_000945"
     CDS             complement(375..1094)
                     /locus_tag="ACHDOB_000945"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HFN3325872.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCSKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVINKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(1094..1345)
                     /locus_tag="ACHDOB_000946"
     CDS             complement(1094..1345)
                     /locus_tag="ACHDOB_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325873.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            complement(1349..2794)
                     /locus_tag="ACHDOB_000947"
     CDS             complement(1349..2794)
                     /locus_tag="ACHDOB_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HFN3325874.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            2934..4097
                     /gene="ftsW"
                     /locus_tag="ACHDOB_000948"
     CDS             2934..4097
                     /gene="ftsW"
                     /locus_tag="ACHDOB_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HFN3325875.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSVLATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            4094..5122
                     /gene="murG"
                     /locus_tag="ACHDOB_000949"
     CDS             4094..5122
                     /gene="murG"
                     /locus_tag="ACHDOB_000949"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HFN3325876.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFGKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(5093..6256)
                     /locus_tag="ACHDOB_000950"
     CDS             complement(5093..6256)
                     /locus_tag="ACHDOB_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3325877.1"
                     /translation="MASFKKIFWINVIIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGSISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIMGIALAIPLLSVFDLAGA
                     MFFWAIFSFIALVVYYPQAKNGRFFRIKKKAHKKINLFTNLTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGILFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALA
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(6264..7115)
                     /locus_tag="ACHDOB_000951"
     CDS             complement(6264..7115)
                     /locus_tag="ACHDOB_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN3325878.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKNPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFIAGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMAEGKI
                     FKVELNK"
     gene            complement(7178..8068)
                     /locus_tag="ACHDOB_000952"
     CDS             complement(7178..8068)
                     /locus_tag="ACHDOB_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFN3325879.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLAT
                     FSKEFKKCFGQNPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKEK
                     YEQTPKQYQKTKNLYFLSKN"
     gene            complement(8065..8670)
                     /locus_tag="ACHDOB_000953"
     CDS             complement(8065..8670)
                     /locus_tag="ACHDOB_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HFN3325880.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICVKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLIKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKVGLEPKGIDFLKSLLEFSQIPLYAIGG
                     INTQNIENFKDINIAGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(8660..9805)
                     /gene="thiH"
                     /locus_tag="ACHDOB_000954"
     CDS             complement(8660..9805)
                     /gene="thiH"
                     /locus_tag="ACHDOB_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HFN3325881.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLSEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNALKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFGALLGIDDFRKDALATALHAHFLQQAYPHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(9808..10584)
                     /locus_tag="ACHDOB_000955"
     CDS             complement(9808..10584)
                     /locus_tag="ACHDOB_000955"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HFN3325882.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKTQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDV
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            complement(10587..11390)
                     /gene="thiF"
                     /locus_tag="ACHDOB_000956"
     CDS             complement(10587..11390)
                     /gene="thiF"
                     /locus_tag="ACHDOB_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HFN3325883.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLESLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDGILICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKVGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(11387..11578)
                     /gene="thiS"
                     /locus_tag="ACHDOB_000957"
     CDS             complement(11387..11578)
                     /gene="thiS"
                     /locus_tag="ACHDOB_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HFN3325884.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(11575..13020)
                     /locus_tag="ACHDOB_000958"
     CDS             complement(11575..13020)
                     /locus_tag="ACHDOB_000958"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HFN3325885.1"
                     /translation="MNLNQTLQEKYPHLEVSVLKLSEVKKNIDFRIDDSFWTMKLIYN
                     NKLNYKKIGECLLKSQYGISINMNEEGDGIPIYRMNDIDNMLCNFEVKKYALIDKNEL
                     QTFRLNYGDVLFNRTNSYEFVGRTGIFYNNRENFVFASYLVRLVCNKEILLPEYLTVF
                     LNTHIGKKEIRRRARPSINQANVNPEELKEIKIPIFPMEFQLEIQNLVKDSHKALEES
                     KELYKKAEETLYLELGLDPKNPLQSLLDSKTNNPTKSLNISIHTLKESFLKTGRLDSE
                     YYQSKYEDIEKMIRSYKDGFCNLKDLVNDISSGFAFSSDDYQDVGELVLIRINNIKNA
                     TLDLSNVIYLKNEAYNLSPKDKIKKGDILISMSGSIGLSCVVRDDISAMVNQRILKIS
                     IKNFNSDVLVLLLNSFICKMQFERIGTTGGVQTNLSSIDMQNILIPKIDSTTQEKIAK
                     YIQESFNLRKKSKQLLDNAKIKVEEQIQGKI"
     gene            complement(13146..13649)
                     /locus_tag="ACHDOB_000959"
     CDS             complement(13146..13649)
                     /locus_tag="ACHDOB_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325886.1"
                     /translation="MYHLLDFSTCKCENEKFDLAYKIFKQDFIEVPLYLAGCIYIDPQ
                     SHKKHKGKEKIFWHITTRENKQNKTREFDSQRACRINWIKQIIINHTHPEIKAFYYKE
                     KRAIRFYLWLYNHNFIVILQKLGRSSSFLVTSFYIDKGYNKNIYEKRYRNYINGNDIE
                     LKNCEWF"
     gene            complement(13649..>13931)
                     /locus_tag="ACHDOB_000960"
     CDS             complement(13649..>13931)
                     /locus_tag="ACHDOB_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RlfA"
                     /protein_id="HFN3325887.1"
                     /translation="KGLEKVLFNKFKQSVNIKIFTIQSHESNIVQLVDLLIGAISYKA
                     RNDIEHVSEIKNYIINKIETLANIELDAGTPPWENKFNIFRIQLSKGEQ"
BASE COUNT         4671 a         2480 c         1723 g         5057 t
ORIGIN      
        1 tttcttatat aagtaataaa taatttttca ttagagctta acttcatcaa aattctaccc
       61 gcaacaaaat caatcttgat aaacaacata ggcttaagca tattattttg ctcaaaaatt
      121 aatctaaaag ttttaaaatg agcatcttgt aaattctcta taccttcatt tgtgcttttg
      181 cgatattttt gatctaaaac ttttaagaaa taacggcgct gtggaatttc attttcttca
      241 aaaaaagaaa aaattttatt ttttcgtcct atgacctttg tgaaattttt ggtaatcaag
      301 tctttaaaat actgaaatac gctaatatca tctgtattaa cattgatagt ttctaaagtt
      361 tgcacgattt gcatctattt ctcccataaa acctcatttt caaaaagctc tttagtgcct
      421 tttaaaattt cattgggtgt ataatcggct ttataagata aagattgaca cttttttaca
      481 aaatacccaa gataaatata atctaagttc atttttttag ctatttgtat ttcattgagc
      541 aaagaaaatt tacccaaaga aaaatacgaa aaatcaggat cataaaaaca ataaatgctt
      601 gaaattccat cctctaaaat atcaatcaaa tcaacgcaaa cgagcttatc ttctatataa
      661 aatgcaagct catatccaaa attcataaaa ccatcaacat aaagattata atactgttta
      721 aagcttaaat cataacgctt ccagttcttt ttttcttcca taaaacgatg gtatttatca
      781 tataaaaaca aatgttcatt gcttaaattg ggtgttctaa gtataacttt ggtgttaata
      841 tttttattta taacccttct ttcacttctt gaaaaattat attcattaac taaaattcta
      901 agacttaaac attcatcaca atctttacaa atagggcgtg aaaaatacct accaaaacga
      961 cgccaacctc gttttattag ctcattattg atttctttag agcaattttc aatgtattta
     1021 tactctattc ttgagcgttt atcttttaag taaggacact gatcttcaag agtacaaaaa
     1081 ccaatctcaa gcattaaatt ttcttaatat ctgtattttt gataaattcg gaaaattcat
     1141 cctgtagttt ttcttgcttt aagaaaattt cttgcatttc cttatctatg tttgtttctt
     1201 gatttttttc gcgaatatct ttggctagtt tttctaaatt ttttacactt gctccactct
     1261 tgcttgattt cttcgctaat tttgaagtat tggtgttagc ttgcatttct tttttaatac
     1321 ttttaagact gtctaaaaaa tccatctatt attccctact ttctcgtatt tttttaagcg
     1381 tagcagctat tgcagctata acttcttctt tattttcttg atgacgatct tctgtttttt
     1441 ctaataattc ttgcatatgt gtctctatga aagaggtgtc taaatacccc cttctaaatt
     1501 ctcttgtttt tgtaatggca attaaaaatg gtattgttgt tctaatatca tcaatcacaa
     1561 attccttcaa agcacgctca agtttattaa ccgctaaatc ataacttgtt gctttaataa
     1621 taagctttgc aagcatggaa tcataataag gcggcacagt atagtcttta taaatatgac
     1681 tatcaactct aacagatggt ccaagagctg ggtagtattc tcctattttt ccaggacttg
     1741 gaataaaatt tttccataca ttttcagcag taattctagc ttcaatagca aaacccctag
     1801 gtttaatatc gctttgttct aagtccaaaa tttctcctgc tgcaatacga atttgtctta
     1861 caataagatc aatacctgta atttcttcag taattggatg ctcaacttga attcttgtat
     1921 tcatttccat aaaataaaag cgattataat catcaagcaa aaactctata gttccagcat
     1981 ttgtataacc tacagcctta gcagctgcca cagctgtaac acccatggtt tttctaagat
     2041 tatctgaaat tccagggcaa ggtgctatct caattacctt ttgatgtctt ctttgaatag
     2101 aacaatccct ttcacaaaga tggataatat ttccgtagtt atctcctaaa atttgaaatt
     2161 ctatatgtct gggattaact acatattttt ccataaatac ttcatcatta ttaaagtatg
     2221 ttaaagcttc tcttttgcaa gattcaaagg cattttcaag atcttgttct ttatgaacaa
     2281 cgcgaattcc gcgtccacct ccaccacctg aagcttttaa aataacagga taaccaatct
     2341 tctcagcaaa aattttaatt tcttccatgc tataggaatt taatttttca gtccctggaa
     2401 caataggtat gccattttta gccattaact tacgagcgat atttttattt cccatcttat
     2461 ggattacttc agattttgga cctataaaaa taattccagc atcttcacaa gccttagcaa
     2521 attcgtaatt ctcacttaaa aatccataac caggatgaat cgcatcagca ccacaagcct
     2581 tagcaatctc aacaatacga gcaacatcta aatatcctct tatagcatcc gttcctatgc
     2641 gataagcctc atctgcgatt tttacatgca aacattcacg atcaggctct gtaaaaactg
     2701 caacactttt aatatgcaaa tctctacaag cacggattac tctaacagct atttcagctc
     2761 tatttgctat gagaatttta tggatttgat tcataatttg ccttttttgt tatattttta
     2821 ttgttaattt tagcaaattt tccttacaaa aacttagcaa aaaatttaat ttattttagt
     2881 tataataaaa ctttttaaaa ttttaattcc aataaagaaa agttataatt ataatggttg
     2941 ctgataaaag attattttat ttaagttgta ttttaatcac cataggaata gtattttcat
     3001 actctcttac agcttttact gttctttttc ttgactatag cgagtttcat ttttttattc
     3061 gtcagctttt ttttggaatt agtggcatac ttataatgtt ttttatttct cgattggatc
     3121 ctgataaagc actttctaaa aaaattattt tagctatttt gattatttct tttatcttta
     3181 tcatcatttt gccattttta ccttctgtat tagcaacagc tagcggagga gctaaacgct
     3241 ggatacgctt aggcccactc tctatctctc ctgtggaatt ttttaaaata ggattgattt
     3301 attttttagc atggagctat acaaggcgta ttgatgatag caaaaaagct atcagacacg
     3361 aggctttaat tcttctgcct tattgtatct tagcttctat agttatagga tatatttata
     3421 tcactcaaaa cgatttagga caaagcgtaa tttctttctt tttgattcta gctttagctt
     3481 tttttgcagg agctagtaaa aggctttttg cttttggaac tttaatcatt atgatgatag
     3541 gtataatggt aatttttagc aaccaaagaa gaattcaaag aatcgcttct tggtggggga
     3601 atatacaaga tgctttttta cctatgcttc ctgattggct ggcaaatgct ttaagagtaa
     3661 gcagcaatag cgaaccttat caaatttcac actctttaaa tgctatagcc catggaggaa
     3721 tgtttggcga aggcctagga cttggaactt ttaaattagg ctttttaagt gaagtgcata
     3781 ctgactttgt tctttcagga attactgaag aaataggact cttaggtctt ggagttattt
     3841 gctatattta tctttggatg attttaagaa tttttagaat tgcaggaaga tgtgaagcta
     3901 aacaagattt tattttctgt tcaggtatag ctttactttt acttttttct ttctttatga
     3961 atgcttttgg tattatttct cttactccac taaaaggtgt agcggttcca cttttaagct
     4021 atggaggaag ttcaatgtgg gcaatttgta taggcatagg atatgtatta atgatttcaa
     4081 aaaaggttaa attatgacaa tagctttaac aggtggtgga actggaggac atttggccat
     4141 agtgcgttgc ttattagaaa gtgcgattaa aaaaaatata gaatgtgtat acataggcag
     4201 tcaaaatggt caagataaag cttggtttga aaatgaagta cgctttaagg aaaaattttt
     4261 tttaagctct aaaggagtgg ttaatcaaag caaatttggc aaaatcagtt ctttactcca
     4321 caccttaaaa ctctccaaag attgtagaga aatttttaaa aaataccaca tccaagccgt
     4381 ttttagtgta ggtggatata gtgcagctcc tgcatctttt gcagctttat tctcacattt
     4441 gcctcttttt atacatgaac aaaattcaaa aagcggctct ttaaatatgc ttttaaaacc
     4501 tttcgctaca aaatttttta gcgcctttga aaaagaaatt agcccttatc ccgtagcaga
     4561 taaatttttt gataatgcta ggattcgcaa agaattaaaa aatattattt tcctaggagg
     4621 atcacaagga gctcaattta tcaacgaact agctttaaat ttagcaccaa aacttcaaga
     4681 acaaaatatc aaaatcatcc atcaatgtgg aaaaaatgat tttgaaaagt gcaaaaaaca
     4741 ttatcaaagc ttaaatatcc aagctgatat ttttgatttt agtttaaatt tggaagaaaa
     4801 aatgaaaaat gcagatctag ctatatcaag agcaggtgca agtactcttt ttgaactttg
     4861 cgctaatact ttacccacta tttttatacc ttatccttat gcagctaaaa atcatcaata
     4921 ctttaatgct aaatttttac aagatcaagc tttatgtcaa atttttatgc aaaactctat
     4981 taatcttgat gaatttttta agtcaatatt aaaactaaat ctagaaaata tttctacaag
     5041 attgcaaaat ataacccaaa aaaatggcgc agatatgcta atccaaaaag ctttatttga
     5101 taatttgact tttataagat aaatatccaa agatatttac taaaattcca acaaaaacta
     5161 acatcaaaat agcaaatgaa aaattttcaa atttatcatg caaaaaacct ataatccatt
     5221 gtccttgtgc tgcaattaaa tatccaaaac cctgagctaa agcagaaagt ctcgctgcta
     5281 tttgagcatt agagcttttt tgtgcaataa aaagcaacgc aatgccaaaa actccacccc
     5341 atggaaaacc catgataaaa gcactaataa taatagaaat tttgctatca aaaataaaga
     5401 gtataccaaa agcgatcaca tacatactgc acaaacctgc tatgtaaaaa gtatgtaaat
     5461 tttgtcttaa ttttcctaaa agtaaagggc caaaaagaga cactggagct gcaacaagtt
     5521 gagcaaataa aaccatactt gtagaaaatt ctttatcaaa tcctttttct acaacaattt
     5581 gaacatacca aaaaaacaaa gaataagcta aaaaactttg aaatcccata aaaagagtaa
     5641 ttttccaagt tgttaaattt gtaaaaagat tgattttttt atgagctttt ttcttaatgc
     5701 gaaaaaatct accattttta gcttgaggat agtaaactac taaagctata aaagaaaaaa
     5761 tagcccagaa aaacatagct ccagctaaat caaatacact aagcaaaggt atagctaaag
     5821 caatacccat aatcgaagaa atactcaaaa caagactata aattcccatt atacttgcca
     5881 ttttttttgg aaatttttct ttaataaaac taggaagtaa aacatttgca attgcaatac
     5941 cacagcccat tgctaacatt cctaaaaata agccatatac accaaaataa gaacgaataa
     6001 tttcgcctaa aaaaattaaa aaaattccaa aaacaatagc acgaatagga gaaaaatacc
     6061 ccacaataaa agaaatactt ccaaaagcta tcaaaggaag acttgtaagt atgcccgcta
     6121 cggttgagtt taaataatac ttatctttaa taatatcaat aataggcccc actgcagtaa
     6181 ttggggctct aagattaaaa gctacaataa taacaataat aacattaatc caaaatatct
     6241 ttttaaaaga agccataaaa gccttattta ttaagttcta ctttgaatat tttaccttct
     6301 gccatcttag gaatccataa aatattacct tcaataaata tatctgcagg acctttcatc
     6361 aaaggaagtt caagttttac agatttaaca ttatctaaat tataaatata tccatttaga
     6421 ttatttcccc aagaacttac caataaacca tctttataag gaactattcc atcataagat
     6481 tctttttcat ttttaattat actgagttct tttgtattta aatcataagc cattacaaca
     6541 ccgccactta caccatcagg atgataacca gctataaaaa gcttatgttt ttttctatct
     6601 agatataacc catttggacc gccaaatttt gctaaatcaa gttttaataa ttcatcatat
     6661 tgcttagttt ttaaatcaac ctttaaaata agtcctgtgc cagtatcgct aaccaaaagc
     6721 gtattgtcgt ctaatttttc tatgtcattt aaaaagattg cacctttaat aggtaaatta
     6781 aaaatttctt ttttagtttt aagatcaaaa ccgcgtaaaa catcgatatc taccacataa
     6841 agagtttttc caatctccat catacctttt ggtgcattaa gatgggttaa aaatttatat
     6901 tctagcactt tgccattttt atcaagttta gaaataaatc catcattatc tttcgccaaa
     6961 ggttcaagtt tttctcctac attagataca taaacatagt ttttatctac aaaaatactt
     7021 tcagggtttt taaaaccatc aaattcttga tattttaatt cacttgcacc aagcaaactt
     7081 ccaagaagcg ctaaacttaa aacatatttt ttcatatttt ctcctttatt taaaaatatt
     7141 ttcattgaat tatatttatt tggataaaaa aaatgtgcta gttttttgat aaaaaataca
     7201 agttttttgt cttttgatat tgcttaggag tttgctcata tttctcttta aatctttcaa
     7261 taaaccaagc taccgaagaa aaagcgcact cattagctat ttcattaata ttttttttag
     7321 aaaatttaag taaaatcttt gctttttgca accttttttc atctaaccat tttttaggat
     7381 tttgtccaaa acatttctta aattctttag aaaaagttgc taaatctaat ttcgcaaaat
     7441 tagacatttc atttacgctt aaaaattctc taccgcaata ctcaaaaagt tgggaaagat
     7501 cgaggcgaaa ttcttttaaa attcctgata aaaaactaat aaaataaata ttcttattta
     7561 aaagcaaatg taaaaaaatc tcttcaaatt tcaaactcac tataggatct aaaatttgcg
     7621 tattttcttc aaaatgcggt gaaaaacttt ccaaaattcc ttgcaaaatc ttatcatttt
     7681 ttacccaaaa aatttcatag ttttgaaact tttgatctag tttaaaaaaa tctttatact
     7741 tataaataag ttcaattaaa aatgcattgt caaaaaaaaa taaataagct tcataaactc
     7801 ctttactaag tcctacattg cttaaagtat agctcccagc ttttaaaaac aaagtttcat
     7861 aagagttaat cttataatct tttgatgcag tgtgtaaaat tttatatcct ttgcgaacaa
     7921 aagttaaaag atgacttcct acattaacaa aagtagaatg cgaagtatcc gtttgtgtat
     7981 atttagcaaa agtgcaagat ttaatttttt tataattgac accttttaat tgctttaaat
     8041 cttctggtaa agaaagaatt ttattcatcg taaattttgc ctacattcta aaagatactt
     8101 tttaagatct ttttctttca ttaaaatttc acgcatacaa acgcctgcta tatttatatc
     8161 tttaaaattt tctatatttt gagtattgat accgcctata gcataaagtg gaatttgact
     8221 aaattcaagc aaggatttta aaaaatcaat ccctttaggc tctaaaccca ccttgcaaga
     8281 actttcaaaa atatgcccta caaaagcata atttacctta taactcatcg cctctaaaag
     8341 ctcttcttta ctatggactg aagtgccaag tatatgaaaa tattttatta atttaggctc
     8401 ttttcttagc aaagaaagcg gtgcgtgaaa ataacgatgc cccaatttta aacactccct
     8461 atcaaaaaaa tgcaaaaaac aagtcacttt ttgctttacg caaatgctta aaacttcttt
     8521 tgctaaatca taatactcaa attcgcttaa atctttttct cttaaaacta tagcatctac
     8581 cttagcctta gcaagttttt caatctgctt taaaaagtct atttctacac attttctatc
     8641 gcttatggcg atgatttttt tatcccacat agatactatc gctcatcaca gcttgtaaat
     8701 tggatctttt aagcatagct aaaatttcat ctacgcttct atcatctgaa atttcaaact
     8761 gctcatcacc ctttttctca cccttatgct cacctatacc cacactcact cctgcactca
     8821 ttttagtagc accaagctta ataacctcat ctctaaagcc tattctttca cgacttgaaa
     8881 tggtaatgcc tgcaaaaggt aaaaaaagtc tataagcaca aagtacttgc aaaaggcgtt
     8941 tttcactcac atctttagga tgaattttag cattattgat aataggcctt aaacgtggta
     9001 ctgaaataga aatttcagca tgaggataag cttgttgtaa aaaatgcgca tgaagtgccg
     9061 tagcaagggc gtcttttcta aaatcatcta tgcccaaaag tgcgccaaaa gccactccac
     9121 gcatacccgc ttttaaagct ctttcttgag cattaaagcg ataagggaaa atgcgttttt
     9181 caccagctaa atgaatttta gaatatttta aagcattgta agtttcttga aaaacagtca
     9241 cataatcaca acccttttca tgcaaaattt tatattcatc ttcattcata ggataaattt
     9301 caacgcctac aaccttaaaa tactctctag ctattttaca agcatttgct atatattcta
     9361 cacttgcaaa ctccctaccc tcgcctgtta gcattaaaat ttcttctaaa ccacttttag
     9421 caatggcttg catttcttcg tgaatttcag cttcacttag cttggctctt gcgattttat
     9481 tacctttttg aaaaccacaa taaacacatt tagaattaca ataatttgac aaataaagtg
     9541 gggtaaaaag agagatagaa tttccaaaat atttttgctt gactttagcg gatttaaagg
     9601 ctaattcttc tatgaaatct tctgctgcac ttgaaagcaa agcttttaaa tgctctatgc
     9661 ttaaatgtgt ttgatttaaa gcatttttaa catctttagc gctaaattga ctctcatcat
     9721 aactttgaac ttgagttaaa accttgttta aaatttcgct ttttatttcc tgcatatgag
     9781 gtaaatactg catataatct tgcataatca atcccttaaa aagcctgtta atggagaact
     9841 tgctttagct ttactcacac ttgccaaacc tgctaaaaaa gccgctcttc ccgcatttac
     9901 tgccaaagaa aacgctttag ccattaaagc aacatctttt gcttcagcta tggctgtatt
     9961 taccatcacc gcacttactc ccatttgcat agcttcacaa gcttgtgaag gacttccaat
    10021 acccgcatct acaatgatag gcaaatcaat ttcattaagc aaaatttgta taaattcctt
    10081 agcacataaa cctttattgc tcccaatagg cgctgctaaa ggcatgatag ccgcagctcc
    10141 agcatcacgc atagctctag ctgcgtaaag atcagcatgc atgtaaggta ggggcgtaaa
    10201 accctcttta gctaaaagct cacaagcttt aatcgtttca taattatcag gcagcaaata
    10261 cctactatcg cttatcactt ctatcttgat aagttctcca caaccaagct ctcttgaaag
    10321 ccttgcaatg cgtaaagctt catcggcgtt tcttgcgcct gaagtgttgg gtaaaagtgt
    10381 gatattttta gggatataat caagtatatt agcaatttcc cctgtatttg cacggcgtaa
    10441 ggctagagtg ataatctgtg ttttagcttc ttctatagct gattttataa gctctagcga
    10501 atattttcca gaacctaaaa taaatcttga atcaaactcg tatttgccta tttttaattt
    10561 atcgtttttt aaattttctt gcatttttac tccttatttg ctaaaagctc taaaacaagg
    10621 ttactttgat gtcctgcgca aatatttacc cttggcgcca taagtccatt tcccacctta
    10681 gcaccattta ccaaatcccc gcacacatag aaatttttag caatttttct tgtttgtatg
    10741 ctgttgctat caccatagcc cgcaagccct gaagcgcaga ttaaaatacc atctttgtaa
    10801 aatctatgaa aattttgcgc tatcattgct tttgcgatag cactatcaaa ggcttcacaa
    10861 actatatcta tatctttaaa caaagactct aaattatcct catcaatttt taaagtacaa
    10921 atttcaacgc tgatataagg attaatttcg ctaatttgct cttttaaagc ttcggtttta
    10981 aacttgccca aatcacttac acggtaagct tgacgattta aattactagg ctcaatcaca
    11041 tcaaaatcaa tcaactttaa ataccccact ccacttcttg ccaaatttat cgctatatgt
    11101 gatccaagtc cgcctaaacc acacaccgcc acgcgcccat ttttaagttt atcgtgaagc
    11161 tttggtgtat gtcttgctct catcatagca tctagtgcgt cttttggagg taaagtattt
    11221 ttttctatac aaaaaagctc atcattttca tttaaagcga tattctcttt tgttgcaaaa
    11281 ccattgataa tccatacatc attttcattt ttgctgatat tttcaaaaaa ttccaaactt
    11341 gttttaaagt ctgtatcaag ttctttgcca ttgaatttta ctctcatcat ccacctccta
    11401 caaaacttac gatttcagct ttatcgtttt cttttaaaat caaattttca aattcactct
    11461 taggtataat ctctccattt aattccaagg cgataagttc tattttcaag cctttttctt
    11521 tgataaaatc cataaattta agctctttta actcaagctt ttgtccattg ataatcatat
    11581 ttttccttgt atttgctctt ctactttaat ttttgcatta tctaataatt gtttagattt
    11641 tttccttaaa ttaaagcttt cttgtatata ttttgcaatt ttttcttgag ttgtagaatc
    11701 tattttaggg ataaggatat tttgcatatc tattgaagaa agatttgttt gaaccccacc
    11761 tgtagtacca attctctcaa attgcatttt acaaataaaa gaatttaaaa gcaataccaa
    11821 aacatcacta ttaaaatttt taatcgaaat ttttaaaatc ctttgattaa ccatagctga
    11881 tatatcatct ctaaccacac aagacaaacc aatgctacca gacatagaaa ttaaaatatc
    11941 accttttttt attttatctt tagggcttaa attataagct tcatttttaa gatagataac
    12001 attgcttaaa tctagcgtag cattttttat attattaatc ctaattaata caagctctcc
    12061 aacatcttgg tagtcatcac ttgaaaatgc aaaaccactt gaaatatcat taactaaatc
    12121 ttttaaatta caaaagccat ctttataact tctaatcatc ttttctatgt cttcatattt
    12181 actttgataa tattcagaat ccaatcttcc tgtttttaga aaagattctt ttaatgtgtg
    12241 tatagagata ttgagtgatt ttgtaggatt atttgtttta gaatctagca aactttgcaa
    12301 tggattcttt ggatcaagtc ctaactcaag gtataaagtt tcctctgctt ttttatataa
    12361 ctccttactt tcttctaatg ccttatgaga atcttttacc aaattttgaa tttctaactg
    12421 aaattccata gggaaaatgg gaattttaat ttcttttaat tcttcaggat ttacattagc
    12481 ttgattaatt gatggtctag cccttcttct tatctctttt ttaccaatat gcgtatttaa
    12541 aaaaactgta agatactctg gcaacagaat ttccttattg caaacaagcc ttactaaata
    12601 tgaagcaaaa acaaagtttt ctctattgtt ataaaaaatt cctgttctgc ccacaaactc
    12661 ataggaattt gttctattaa acaaaacatc tccataattt aacctaaaag tttgcaattc
    12721 atttttatca attaaagcat attttttgac ttcaaaatta caaagcatat tatcaatgtc
    12781 attcattcta taaataggga taccatcgcc ctcttcattc atatttattg aaataccata
    12841 ttgagatttt aataaacatt ctcctatttt tttatagttc aacttattgt tataaataag
    12901 cttcattgtc caaaaactat catctatgcg aaaatctata ttttttttca cttcactaag
    12961 ctttaataca cttacttcta aatgtggata tttttcctgc aaagtttggt ttagattcat
    13021 tttattcctt tttttatttc aatctaagta aaaaatattt ataattataa agctcaacta
    13081 ccggtggtag aaagagatgg ctagctttta tgcttcttgc agatgcctaa atctgcacca
    13141 aacccctaaa accattcgca attctttagc tctatatcat ttccgtttat ataatttcta
    13201 tatctttttt cataaatatt tttattatat cctttatcta tgtagaaact tgtcactaaa
    13261 aatgaactac ttctgcctag cttttgtaaa ataactataa aattatggtt atataaccac
    13321 aaataaaaac ggattgcccg tttctcttta taataaaaag ctttaatttc gggatgagta
    13381 tgattgataa taatttgttt aatccaattt attctgcaag ctctttggct atcaaactcc
    13441 cttgttttat tttgtttgtt ttctcgtgtt gtgatatgcc aaaatatctt ttctttcccc
    13501 ttatgcttct tatgtgattg cggatctata taaatacaac ctgctaaata caatggaacc
    13561 tcaataaagt cttgtttgaa aattttataa gctaagtcaa atttttcatt ttcacattta
    13621 caagtgctaa aatccaagag gtgatacatt attgttcacc tttactcaat tgaatcctaa
    13681 aaatattaaa tttattttcc caaggtggcg ttcctgcatc caattcaata tttgccaatg
    13741 tttcaatttt atttataata taatttttta tttcgcttac atgctctata tcatttcttg
    13801 ctttgtatga aatagcacct attaacaaat ccacaagttg aacaatattt gattcatgtg
    13861 attgaattgt aaaaattttt atatttactg attgtttaaa tttattaaac aaaacttttt
    13921 ccaatccttt t
//
LOCUS       DAZAND010000043        13865 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.043, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000043 DAZAND010000000
VERSION     DAZAND010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13865
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.043"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..146)
                     /locus_tag="ACHDOB_000961"
     CDS             complement(<1..146)
                     /locus_tag="ACHDOB_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlfA"
                     /protein_id="HFN3325888.1"
                     /translation="MNNMKEFKIFCDESNHLFYKDNPTLCSRVMVLGALKVPSSEIIK
                     INKT"
     gene            complement(151..2214)
                     /locus_tag="ACHDOB_000962"
     CDS             complement(151..2214)
                     /locus_tag="ACHDOB_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HFN3325889.1"
                     /translation="MIEEILKDSDYKLDLFSKKAIAELETKIIAKTNKNNQIIYYTNC
                     LIRDKEIKLTPEEIVRQLYIDKLLNEYNYPKDMIKIEFGVHFGREVKRADIVIMDKIQ
                     ITVPYIIIEVKKPKLKDGKEQLKSYCNATGATMAVWCNGKEISYYHRKDPNYFESIPN
                     IPASNQTLPDLLKVKFTFDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECF
                     KLIFIKLFDELEGARDRTKSLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKI
                     KLSPSHLSVCVSSLQNVKLFNSNLEVIDDAFEYLVNKSSKGEKGQYFTPRYVIDMCVK
                     MLNPKKDESMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVK
                     EKVFGIDFDEKSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEG
                     FKRLKNLRVTKNQNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGRD
                     ILFIERNLDMLKPGGRMAIVLPQGRFNNSSDKYIREFIAQKARILAVVGLHGNVFKPH
                     TGTKTSVLFLQKWDDKLCPKCEDYNIFFATMNEPSKDNSGEKIYYPLLDSHDHLVVKH
                     DLFHPHLEGDEPIKQKDESQEEFDKRIQEYRLNVEKYKDLQKDGIAEAFIEFAKAENL
                     SFWKE"
     gene            complement(2224..3321)
                     /gene="dapE"
                     /locus_tag="ACHDOB_000963"
     CDS             complement(2224..3321)
                     /gene="dapE"
                     /locus_tag="ACHDOB_000963"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HFN3325890.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFNDEGEHLAFGGHVDVVPAGEGWKNDPFEPLEEEGFIYARGAQDMKSGVA
                     AFIDAVKDVSFKGRRLSLILTSDEEGEAKYGTKAVLEWMKEKNMLPDYAVVAEPTCVK
                     KMGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(3326..3925)
                     /locus_tag="ACHDOB_000964"
     CDS             complement(3326..3925)
                     /locus_tag="ACHDOB_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HFN3325891.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGSVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGIILNGSNPYVIGFWLSATGIVLSNQHTYSTILGLVVAILFWIGALAF
                     VVAKYSYLFSAKVIRIINIVSALIIEYFALSLLYKTFIG"
     gene            complement(3918..4619)
                     /gene="npdA"
                     /locus_tag="ACHDOB_000965"
     CDS             complement(3918..4619)
                     /gene="npdA"
                     /locus_tag="ACHDOB_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HFN3325892.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     IHLHGFLPELRCLKCEGIFNIGYEKFTDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLHQTSLFISIGTSGAVLPVGQYASMCEKSILNIYEKDVNLERYFDKIYIEDIISAID
                     KITLDIENFMKDGNV"
     gene            complement(4662..8500)
                     /locus_tag="ACHDOB_000966"
                     /pseudo
     CDS             complement(4662..8500)
                     /locus_tag="ACHDOB_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517037.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
     gene            complement(8509..10719)
                     /gene="mutS"
                     /locus_tag="ACHDOB_000967"
     CDS             complement(8509..10719)
                     /gene="mutS"
                     /locus_tag="ACHDOB_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HFN3325893.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSDLHFKR
                     IHELCEVEFPTMPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKANESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTPKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVKL"
     gene            complement(10709..11059)
                     /locus_tag="ACHDOB_000968"
     CDS             complement(10709..11059)
                     /locus_tag="ACHDOB_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325894.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKLFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(11052..12350)
                     /gene="murC"
                     /locus_tag="ACHDOB_000969"
     CDS             complement(11052..12350)
                     /gene="murC"
                     /locus_tag="ACHDOB_000969"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HFN3325895.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFDSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYSNEVSKLHHAYAEFLDTAKIRVINAEDEFLKNYKNE
                     STKLYPSKDIKNCTMRIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYAAGEEPIGLDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            complement(12414..>13865)
                     /locus_tag="ACHDOB_000970"
     CDS             complement(12414..>13865)
                     /locus_tag="ACHDOB_000970"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HFN3325896.1"
                     /translation="LKPVNLRLFPLIALNLILIIVYVVALRGPFKHVAINVQNYSFSE
                     YSVVNDTMLNPIMAFSWALKQYKEEAALKAITSLKAQELKEKLFDYLHQSPINLKAEK
                     NHPSVFVNLMESFGLNLADFANTEHNFLGSLDKHFKQDFLFKRFLSSSNGTIPSFANL
                     FFVSPFSNISTSKFQKTYLDLTPIAIYKKAGYKVIFVSAGNGSWQNIKNYLGILGVDE
                     IIDENILMKEYNGAKDSENGYGVADEFLYKKVYDLLQKNPHNTLIIALTISNHPPYKI
                     PQNDLPKLENIPQTLLNMLPYEKDKQDNIIKAYTYANNEFGKFLDKVKQSPFKNSVII
                     AATGDHRVREMSMDLNSQKAFAYSVPFYLYIPKDLQDNIYYDKDRVGSHKDIFPTLYA
                     LSLNNVKYLSVGGRNMLARSSDEKLEFGINDAVWIDKKGIYSGGKGYYFESNDTLKDM
                     NKAFNLDIYTKDFDKFYRELNLYQLAERLGISK"
BASE COUNT         4503 a         2508 c         1642 g         5212 t
ORIGIN      
        1 attgttttat taattttaat aatttcagat gatggaactt taagcgctcc taataccata
       61 acccttgaac acaaagttgg attatctttg taaaataaat gattgctttc atcgcaaaaa
      121 attttaaatt ctttcatatt attcattcac ttattctttc caaaaactca aattttctgc
      181 ttttgcaaat tcaataaaag cttcagctat gccatctttt tgcaagtctt tatatttttc
      241 tacatttaat ctatattctt gtattctttt gtcaaactct tcttggcttt catctttttg
      301 ttttataggc tcatctcctt ctaaatgcgg atgaaataaa tcatgtttta ctactaaatg
      361 atcatgagaa tctaaaagtg ggtaataaat cttttcgcct gaattatctt tactaggctc
      421 attcatagta gcaaagaaga tattatagtc ctcacacttt ggacataatt tatcatccca
      481 tttttgtaaa aataaaacac ttgtttttgt ccccgtgtgt ggcttaaaga catttccatg
      541 aagtcctaca accgctaaga ttctagcttt ttgtgcgata aattctctta tatatttatc
      601 gcttgaatta ttaaaacgcc cttgtggcaa tacaatagcc attctaccac caggctttaa
      661 catatctaaa tttcgttcaa taaataaaat atctcttcct accttacttt gaggtttgcc
      721 attttctttt ttgcctagct catatctagc taaaattcta ctctctttta tatctcctgc
      781 aaaaggcgga tttgccatta aaacatcaaa attaaaatct ctattttgat ttttagttac
      841 tcttaaattt tttaagcgtt taaaaccttc aaaatacaca tcttgccaat cttcatcatc
      901 ttttacccac tcatcccatc tatcaaagtc aatggaattt aaatacaaaa catttgtatg
      961 cccatcacct gcaattagat taagcatttt tgatacgcgc acactctttt catcaaaatc
     1021 tataccaaac actttttctt ttacataatc ttgacactca gaaatctttt cttgggctgt
     1081 aaagagatga cttgcttcta tgcctctttc tttataaatt gaacgccaca cataaaaaca
     1141 agtatgtatc ggaaatccac aacttccact tgcagtatct atcatacttt catctttttt
     1201 gggatttagc atttttacac acatatctat tacataacgc ggagtaaaat attgcccttt
     1261 ttcacctttt gaggatttat tcactagata ttcaaaagca tcatcaatca cttctaaatt
     1321 tgagttaaat aactttacat tttgcaatga tgatacacat acacttaggt gcgaaggaga
     1381 aagtttaatt ttctcatcat tattaaatac accttcccat tttttctttg ctttatcaaa
     1441 gagtttttct attttttgct taagttcaga atcagactct ccataatttc taaactctaa
     1501 gctctttgtt ctatctcttg caccctctag ctcatcaaaa agttttataa atataagctt
     1561 aaaacattct tcaaatacat caactccagc atttgccaac acctcatctt ccatttctgt
     1621 aactaaattc tttaaacttc gcttttgact ttttaaaata tcttctttaa tcaaatcatc
     1681 aaaggtaaat tttactttca acagatccgg taatgtctgg tttgatgcag gaatatttgg
     1741 aatagattca aaataatttg gatcttttct atgataatag ctaatttctt taccattaca
     1801 ccacacagcc atagttgcac ctgtagcatt acaataactt tttaattgtt ctttgccatc
     1861 tttcaacttt ggctttttta cttctataat gatgtatggg actgtgattt ggattttatc
     1921 cattatcaca atatcagccc tttttacttc gcgtccaaaa tgcacaccaa attcaatttt
     1981 tatcatatct ttaggatagt tatattcatt taaaagctta tcgatataaa gctggcgcac
     2041 aatttcttct ggcgtaagtt taatttcttt atcgcggata aggcaattag tatagtatat
     2101 aatttggtta tttttgtttg ttttagctat aattttagtt tccaattcag caatagcttt
     2161 tttactaaat agatctagct tataatcact atcttttaaa atttcctcaa tcattctaaa
     2221 cctttaaaaa ttttctatca agtctttaaa aacaagacaa agtttttcaa attcttctat
     2281 acttaccctt tcatcaatag cgtgaattct atcattacaa accccaaatt ctactacctt
     2341 tacaccgtat tttgcaaaat accttgcatc acttgtaccg cctttggtat taagctctgg
     2401 cacttcatga gtgatttttt gaacgctttc attcattttt tgaacgattt tattatcgat
     2461 atttgtcaaa aaagcttcgc ttgattgttt tagctctaac tcatagttta aaccatgaca
     2521 aattttttct acataacttt ttacatcttc taagcttgta tcaggggaat tgcgtacatt
     2581 aaacataagt tttaaatcat ttggcgttac attacatacc cccatacctc cacgaatatc
     2641 agttataacg atttttgaag gactaaattc agcactacct ggatcaagat caaaacccgc
     2701 taaaagcttt aaaaccggtg caaaatcatg cacaggattg atacattttt caggataagc
     2761 aacatgccct tgttttccac ggattaaaag ttttccattg atagaaccac gacgccctat
     2821 tttgatacta tcgcccattt tttttacgca agtaggttca gcaaccacag cataatcagg
     2881 tagcatattt ttttctttca tccattctaa aacagctttt gttccgtatt ttgcctcgcc
     2941 ttcttcatcg cttgttaaaa taaggcttaa tctccgccct ttaaagctaa catcctttac
     3001 agcatcgata aaagcagcta cgccactttt catatcctgt gcaccccttg catagataaa
     3061 gccttcttcc tccaaaggct caaaaggatc atttttccaa ccctcacccg caggaacgac
     3121 atctacatgc ccaccaaaag ctaaatgctc accctcatca ttaaatttct tagtaagcaa
     3181 gagattttta atcccctctt tttctataaa aaaagcttca aaatcactca gttccatagc
     3241 gatgaaattt aaagctccat catcatttgg cgtaacagat ttaaatttta aaagttcgat
     3301 taaaaattct tttgcattca tttttttatc ctataaaagt tttgtataat aaactcagag
     3361 cgaaatactc tataatcaaa gctgaaacta tattgataat acgaatcacc tttgcactaa
     3421 aaagatagct gtattttgcg acaacaaaag ctaaagcacc tatccaaaaa agaatagcaa
     3481 caacaagccc cagtatcgta gaataagtgt gttgattgct taaaactatg cctgtagcac
     3541 taagccaaaa acctatcaca taaggattag agccatttaa aatgatacct ttaatataac
     3601 ttttcaaaag actttcttta aattctttat gctctaaatt taagctttct ttcttttttc
     3661 ttagcatcaa atacgccata taagttaaaa aacaaaaacc aaaaatcgcc aaaaaacgca
     3721 taaaaatgac attgtctaag aaatttaaaa gcccaaattg aagcaaaaaa agataaagca
     3781 tatctatact aaatgctcca agtcctacag ctatggaatt tttaaaagct tttagtgcat
     3841 aagttaaaat caaaatattt acagatccaa aaggcacact cactccaaag cccaaaaaaa
     3901 ctccacttaa aaaagaatca aacattacca tctttcataa aattttctat atcaagtgtg
     3961 attttatcaa tagcgcttat aatatcttct atatagattt tatcaaaata tcgctctaaa
     4021 ttcacatctt tttcataaat atttaaaata cttttttcac acattgaagc atactgcccc
     4081 acaggcaaaa ccgccccact tgtgcctatg ctaataaata atgaagtttg atgaagtaaa
     4141 gaataaagcg tagcataagc aggagcttgc tcttcaaaca tgactatatt gtgtcttaaa
     4201 tccttacttt tgcattttgg gcattgttta tctgtgaatt tttcatagcc tatattaaaa
     4261 attccttcac attttaggca acgaagttcg ggcaaaaagc catgcaaatg aatcacatct
     4321 ttacaccctg cacgctctag caaatcatct acattttgcg tgatgacaaa aaggttttta
     4381 ccccattttt cttttaattg tgcgattttt tcatgagcat gatttggctt tacattttga
     4441 agttgtgccc ttcttgcatc gtaaaaatca agtacttttt taggattttt tctaaaacct
     4501 gttgcagagc aaacctccat cacatcgtat tcttcccaaa gtccatcatt atctctaaaa
     4561 gttttaagcc cacttggagc agacaaaccc gctccgctta atatcataat gtttttcatc
     4621 gctaaacctt ataaaattta caaagtttag cgaaaaatgc tttaagaaaa taaatatttt
     4681 tgcaagattt tttctttttc tttttctaat ctatcaagtt ctattttata ttcattgatt
     4741 tttttctcaa tcttgtcaat tatatctgct atttgatctt gaaattctaa agaaggaagt
     4801 ttaactctta atgcttttat tctatctatt gaagctctaa gttttcttga aaatccttgt
     4861 tttttaccag cttcatttaa aataaaactt atgtatttag catttatttt tgtatcatca
     4921 acccttaata ccccacaatg atcagttgga taaaactttt tattttttgg tataaatccc
     4981 accatccaat ctccatctat accccacaaa acagaatcat tatcataatc ttgcaaaatt
     5041 tctttattaa caaatccaaa tacttccaac acatttgcac tataaacagg aatttgtcca
     5101 ttttcaagca gctcattatt taaaactctt tttccaatac ttagtttaaa aattggattt
     5161 gataaagcat attctttaat tgttttatta aatgatgata aaaattcact atccaaattt
     5221 attttacaca aattattaat tttatctaaa atagaattta gttcatattc ttgactgtcc
     5281 tctataatac cacatttttg aagcattgct ttgattaggt tttgatactc ttttatactc
     5341 aaacttaaag tattatactg ctcttctatc ttttcacact ctgctacgat ttgtttttga
     5401 atttcaagcg gtggttttgg aataaccata ttttgcaaga ttcctaaatt tatattttgt
     5461 tgcgaagttg taataacttc gttatataat tgaaatttaa aataatcaat agcatacata
     5521 agatatttat ttataaattc ttcatttgga ataatagcta ctatagcttg atttgttgtc
     5581 atatcttcgc ctaatattcc aactctacca atagttgcat aaattgaaac aacaacagca
     5641 cctttttgta tcatttttgc attagaattc ttaaaaccct ctcttgtaat tttttcttta
     5701 gtatccataa taacttgatg gttagagtaa tcgctaattg ttagccactt aatatcccca
     5761 ttccaataat ttatattttt tcttgatggt gttcctccca tgaaaaaatc tccacaaatt
     5821 ttcaatttaa ccaatgggta ttgagacttt atttcttctc tttgagtttt tggatttaaa
     5881 cttatagctt tattaaattc cactttttca aaatctatca tatcaacaag ccttgctttt
     5941 gtagcataag tctgtaattc ttgcgggata acatcaagcg tatttaaaaa agatttgtag
     6001 attaaagtat taagcttagt ctcattttgt ggattgcctc tttcaaaaag tgggctcaaa
     6061 taaggctcgt gcaattcttt taaaccttca tcaccttttc tattactcca ctcataacct
     6121 aaaaatttct tttgttcttt tatatcactt ggggatttta tgattaaaac ttcttgatta
     6181 agacttagac taaaataaag caatttatcc ttttctattg cctgagcata agctaaaaag
     6241 gctttatctt ctaaatcttg cttatcttta ctttctttat aaattttaga ttctttaagt
     6301 tttttataat cacttgtttg cctaaatgca ttgcgataat ctttaaaggc ttctaactct
     6361 gcaagattaa aatctaagtt tccatttaaa aaattactat aaagctcttt atcaaatttt
     6421 ctaaaatcac aatatgcact tagataattt tgataaaagt tttcattgtc ttttaaattt
     6481 tcagcttcta tgcgttcttt aatcaaacta taatcttgag aaataagatg attttcttgt
     6541 ttaaaagttt cttttttgcg taaaaataaa ataatcgtat ttgtccctgt tgctccaaat
     6601 gtttgattac ctagctctac aatggcaata aaatcaaaat tttgaaacaa tatttctctt
     6661 gtatttttat aaatagaatc cttatttaaa atagaacttg gcaaaataat ggcagcttta
     6721 gcattatcat ttaaaatttg atttgctcgc tcgcaaaaaa agcattcgat agaattattt
     6781 gtttctatgt ttatatcatc gttaaaaagt ttataggtat tcttagattt atcacttaaa
     6841 gtttctaaaa atccttttac agaataaggc ggatttgcta taagcaaatc aaaactattt
     6901 gattctattt gtggttttgc tttttctcct tctaaattat ttgtatttgc taattcaaaa
     6961 gaagcaagtg catcagcata taaaatattg atttcatttt gcccatacat tgcacttgat
     7021 accttagaaa ccttacttaa gcgatactct ttttcaatac cataaatatt tttataatgc
     7081 tctttaagct catcttctgt tagataacgc ttaagctcat tggcataggt gtttaaaaaa
     7141 tgtccagcac cacaagcata atcaatcacc cttaaagctt tagagctttt gcttaacatt
     7201 tcttgaagcg gtaaagaata cataataaat tcacaaattt gaataggggt aaaaaactgc
     7261 ccttcatctt gcttcatacc tttttgtaaa aaaagttcaa aaagattgcc taaaaattga
     7321 tttgtagagt tttgagtaag cttgtaattt gcaaaaagct ctactatttc ttttaataca
     7381 agtgcatttt ttaagaataa ttctttatta tgcacttcta aaaatgcaaa atcattattt
     7441 gaataaaatt ttaattcttt gatgtaattt tgcattactt cttttaaagt ttttatcttt
     7501 aattacttaa agtctttttc tatatcttca ttagatacaa aggtaatttt ctctcctaag
     7561 aattctttca tagcttcttt ataaagccac attaatctat cttgcatatt tgcataagta
     7621 tctgccatta caccaaaata tccaaatttg agattgtttt tattaaaagt ttcatcataa
     7681 attttgcaaa gaaaaatatt tacaagttta tcaaaggcat tttccttgcc tgatatatta
     7741 tgcttgcgta aaatttttgc aaattcgtga tatttgcctt cttctttaag ttctttaaga
     7801 ttatcaaaag ttggagtaat ttctaaaatt ttataggtat tgacatttgc ttcaaaaata
     7861 ccttgtttaa aatattgcag ttcataactt tctttccaag ttttaaaaag ttctatattg
     7921 ttattagatt ttttataaga attttgcaat tccttttctt ttagatattc ttcgttatcg
     7981 taagcttgta tgatgtaatt tttatattct aacttatcgc taaaatcact tgtataaaga
     8041 caaagatatt ttacaccttt ttcttgctga aaataagaaa aaggtgtccg ccatcttctt
     8101 gcattctatt ccattctttt ataaattcac tatttttaga atctgtggtt ttacattcta
     8161 taatcaaaca aggattgttt tcattatcct ttactaaaat atcagcctta ccaccttttt
     8221 tatccctgcc aagattccat tttggctcta actctaaatg ttcagcctta taaccttttt
     8281 ctaaaagtct atgcacacat tcaaaaacta caaaattttc agggtgtgaa aaattagaag
     8341 tagttttatc gtgaattttt atttcttttg gataattaat actttggttt ttataatcta
     8401 ttaaaagagt gtaattattg attgttttta cataattttc atttttattt ttaaagccta
     8461 agttttctaa aacttgtttt aaattatctt ttgcaatcat ttatttcctt ataattttac
     8521 caccttagca ccaaaaccac cttgattgat cggtgcgtca ttaaagccct tgacactttt
     8581 atgagttttc aaaaactctc ttacagcaaa ggcaagcttt cctgttccta taccatggta
     8641 aactaaaact tcatcaaagc ctgcaagcaa agcatctgaa ataaatttat caagccttga
     8701 aatagcttca tcactcctaa gcccgtgcaa atccaagcta acgctaagat tagtcggttt
     8761 tgccacacta atgcttgttt ttggacttat tttaggtgta ggagtgcttt ttttaagcaa
     8821 ttttaaaggc acacgaagtt tgatcccatc actttcaacc atagcatcgt ttttagaaat
     8881 gcttatgatt ttacccttaa ttttttcata ttttacaaaa tcccccacac gcaattcttc
     8941 gttttgctcc atacttggca agatgatttc ttttttaagt tcattggctt tattaagact
     9001 tctttgcttg tcttttatat ctttaagctg tatggttttt ttagcttctt ctatggcttt
     9061 gtgaaattta aattctaaat ttctcaaact cgtacgaaat tcttgttcat ttttttcttt
     9121 ttgctctttt aaggaaagta aaatttcatc gactttttgc tcttttttct cgacattttc
     9181 aagcttagct tttagttcta attcaagatt aatattttta cccacaagct cttctaaatt
     9241 ttctttatcc tcgccataaa gctttttagc ctcgctaact aaattcggcg gaatctgata
     9301 acgcaaagcg gtttcaaagg cataagattt tcctatagta ccttttaaaa actcatattt
     9361 tgggcgtgaa agctcttcat catataaagc agcaatgagt tcaacttgct cattctttgc
     9421 taaaagcatg gcaaggcgtt tgtggtgtgt agtaatgatg attttaagat tattagctat
     9481 gagttttgaa attaacacac tatacaaaca agccgcttct tcaaaatctg ttccaagctc
     9541 tatttcatcg atacctaaaa gcaaattttt cctagaaaaa agtctagaaa aatgcaacat
     9601 tcttcctgca aaggttgaaa tgtcgttttt aacattttgc ggatcttcta tgatggcatc
     9661 aaattcttta aaagtaccga ttttactttc attggcttta atatgcatag gcaaaagatg
     9721 tttagctaaa aatgctgcgc ttagcatgga ttttaaaagc atggattttc cgcctgcatt
     9781 tacccctgtg atgattaaaa cttgtttttt aaattccaaa ctcacgcttt ttggattttt
     9841 taaggcagga tgagcgaaat ttttaagcac taaatccgta ctttgatcac acaaaacaaa
     9901 ttcaaaatcc ctttttttag caagcaaaac cctagcacta taatgatcaa aaagatcaaa
     9961 ggctgtattg ataaatttta aaaaaggtag attttttgct aaaaaagctg agaaattttt
    10021 agcgtattca taataaattt cttctttttg atttttgatt ttttctatat cattttgcaa
    10081 attttcaaca cttaaaggca cgatataaaa gccaccgcca ctacttctac ctatgatttt
    10141 tgctttaata gcgtgattaa acccacctct tacaagcaag gcttcaagat tgtttataag
    10201 atggatttgt gtatcgataa gataaggcat taaagctttt gtatagcaaa atttcttaaa
    10261 ctcagctatt atgctttcgt ttttcaatct taaagcggca ttaagattta caagtctttc
    10321 atctaaactt tcttttaatt ctcctttctc atcgaaattc aaacaaagct ccaaagcccc
    10381 gctaacaaat tctatctttt gtagccaaga gtctaaattt gttcctagtt ttattttttt
    10441 taacttttca aaataacgaa aaatttttac aaattcaaaa atttcatcta aatgcaaaat
    10501 tccttgctta cttaaatgta ctaaggcttt atcaagattg ctaagctctg gcatagtagg
    10561 aaattccacc tcgcaaagct catgtatacg tttaaaatga agatcagaat ctccttgcaa
    10621 aaaaatctcc ttatctcttg caaaaagagc tttaaactct tctaaatagc tgtttaaatc
    10681 aagctttgag atcaattctt cttttgtatc attcatcatt taacctacaa tctttaatat
    10741 ctatgattaa agaattaaaa ctttgattat tatcctttga aataaaactt cctgtaccaa
    10801 attcataatt aaaatacgcc ttagaaacat tgatatcttt acataaaata tttttatttt
    10861 gattaaaagc tacgataata tctgttctta aatgactttt ttgtgtgttt tcaaattcaa
    10921 aaaatactgc taaaacaata aaaatcacaa gcaaaatacc aaaaaaaagt ttagtttttt
    10981 tgcctaattt ttcacgcaaa gcaaaagtga ttaaggctaa aattaaaata attaaaaaat
    11041 ataaaaaaaa cctactcatt tttttgcctt aatttattac tgatatctcc tgcaccaaaa
    11101 cctataataa gcccttcttc aaaaacttgc cccttagaag ccaccaaaaa tttaccctct
    11161 cttttgatat cttctacaaa taaagcctta ggaaaaaccg cttttaaatc aagccctata
    11221 ggctcttctc ctgcagcata aacaggtaaa attataagct cgtctacacc ttcaaaagcc
    11281 tttgcaaatt cctttaaatt tgcagccaaa cgcgtgtagc ggtggggttc aaagatagct
    11341 gtgattttct tatatccgcc taattttgcg tattcttgtg ctgcacttaa agtcgctttt
    11401 atttcggtgg gatgatgacc ataatcatcg attaaaacca aattttcatc agcatgtaaa
    11461 atatcaaaac gctttttaat accttgataa tttttaagcc tagttcttat cgtttctata
    11521 tctaagaaat ttaaagccgc caaaatcgcc aaagacgcat caagggctaa atgatatccc
    11581 atgccaaaaa ccttaaattc acctaaatct ttcaactcaa agcttgtaaa aggtttgaaa
    11641 ttttctatac gcatggtgca gtttttgata tctttgctcg gataaagctt ggttgactca
    11701 tttttataat ttttcaaaaa ctcatcttca gcattaatca cgcgaatttt agccgtatct
    11761 aaaaactccg cataagcatg atggagtttt gaaacttcat tgctataatg atctaaatgc
    11821 tctgcttctg cattagtaac tatagccaaa taaggatttg aatttaaaaa agaactatcg
    11881 ctctcatcag cttcaaaaac aaggttttgg ctttctttat aaatcatatt tgaatcaaat
    11941 tcttttaaaa tcgctccgat gatcacagaa gcatcatcaa gcaaagaagc caaaatactt
    12001 gaagttgtgc tttttccatg tgctcctgca actgcaaaaa cgcgcttatc ttctaagata
    12061 agaggtaagg cctccttgcg tgaaaggcat ttaatgccta attctttagc gtgtttaaat
    12121 tcaggatttt cttctttgat agcagcagaa taaataacta aatctttgtt taaaatattg
    12181 tctttatgat gagggatact gaccttaacc ccttcttttt ctagttcttt agtgatttta
    12241 ctctctttaa gatcacttcc gctaatttta aaaccttttt cttttaaaaa tcttgctaaa
    12301 gcggaaattc ctataccgcc tatgccgata aaatggatat tttgcatcat ttaaaccttt
    12361 atactttaaa ggctaaattt tagcactttt ttactaaaaa gaaaatataa atcctatttt
    12421 gaaatgccta aacgctcggc taattgatat aaatttaact ctctataaaa tttatcaaag
    12481 tctttagtat aaatatcaag attaaaagct ttattcatat cttttaaagt atcattactt
    12541 tcaaaatagt accctttacc gccactataa ataccttttt tatcaatcca tacagcatcg
    12601 ttgatcccaa attctaattt ctcatcactt gatcttgcta acatatttct tccgcctacg
    12661 cttaaatact tgacattatt taaacttaaa gcataaagag ttggaaaaat atctttatga
    12721 gatcctacac gatctttatc ataataaata ttatcttgca aatccttagg aatataaaga
    12781 taaaaaggta cactataagc aaaagctttt tgggaattta aatccatact catttcgcgt
    12841 actctatgat ctccagttgc tgctataata acactattct taaatggact ttgttttact
    12901 ttatctagaa attttccaaa ttcattattt gcataagtat aagctttgat aatattatct
    12961 tgtttatctt tttcataagg aagcatatta agcaaagttt gtggaatgtt ttctaatttt
    13021 ggcaaatcat tttgtggaat tttataaggt ggatgattgg atatggtaag agcaattata
    13081 agggtgttgt gtggattttt ttgaagcaag tcataaactt ttttatataa aaactcatca
    13141 gctactccat aaccattttc actatctttt gctccattat actctttcat taaaatattt
    13201 tcatctataa tctcatctac tcccaaaata ccgagataat ttttaatatt ttgccaagat
    13261 ccattacctg cacttacaaa aatcacctta tatcctgctt tcttataaat agcaataggt
    13321 gttaaatcca aataagtttt ctgaaatttg cttgtagaaa tattagaaaa tggacttaca
    13381 aaaaataagt ttgcaaaact tggtatagtt ccattactag aactcaaaaa acgtttgaat
    13441 aaaaaatctt gcttaaaatg tttatctaac gaacccaaaa aattatgttc tgtatttgca
    13501 aaatcagcca aattaagccc aaaactttcc attaagttaa caaatacact aggatgattc
    13561 ttttcagctt ttagatttat aggactttga tgcaaataat caaaaagttt ttctttaagt
    13621 tcttgtgctt ttaaagatgt gatagccttc aaagctgctt cttctttata ttgttttaaa
    13681 gcccaagaaa atgccataat tggatttaac attgtatcat ttacaacact atattcgcta
    13741 aaagaataat tttgcacatt tatagccaca tgcttaaatg gaccccttaa ggctacaaca
    13801 taaacaataa ttaatattaa atttaaagct atcaagggaa ataatcttaa attaacaggt
    13861 tttag
//
LOCUS       DAZAND010000044        13728 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.044, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000044 DAZAND010000000
VERSION     DAZAND010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13728
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.044"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            15..1607
                     /gene="yidC"
                     /locus_tag="ACHDOB_000971"
     CDS             15..1607
                     /gene="yidC"
                     /locus_tag="ACHDOB_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HFN3325897.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVVYDYFFIPKQPLKIEQNIT
                     QQNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DKKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANKNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGVTMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKQAEHEK"
     gene            1604..2422
                     /locus_tag="ACHDOB_000972"
     CDS             1604..2422
                     /locus_tag="ACHDOB_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HFN3325898.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFASSKNHKPETHEPKQENKIEIKNEKNKIQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYNEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQSVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            2415..3743
                     /gene="mnmE"
                     /locus_tag="ACHDOB_000973"
     CDS             2415..3743
                     /gene="mnmE"
                     /locus_tag="ACHDOB_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HFN3325899.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYLNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            3754..5940
                     /gene="purL"
                     /locus_tag="ACHDOB_000974"
     CDS             3754..5940
                     /gene="purL"
                     /locus_tag="ACHDOB_000974"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HFN3325900.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGDIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPMRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVMGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPTSEPKYLSEIKNYKFE
                     LKSSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGKLGASVIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFGGSMVMKIQDKKVSGSLKELDYKAELALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGANLTSDFDDEKMIFDESASRAIIGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDSIELSKAELDKLYFESFKEQIQ"
     gene            5937..6707
                     /locus_tag="ACHDOB_000975"
     CDS             5937..6707
                     /locus_tag="ACHDOB_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HFN3325901.1"
                     /translation="MTLVLIILVVLVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            6710..8242
                     /gene="purH"
                     /locus_tag="ACHDOB_000976"
     CDS             6710..8242
                     /gene="purH"
                     /locus_tag="ACHDOB_000976"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HFN3325902.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFRANFKALKSEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            8341..9933
                     /locus_tag="ACHDOB_000977"
     CDS             8341..9933
                     /locus_tag="ACHDOB_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN3325903.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     DTVSTSVFQTMRMAMNLGDPEKIKEAIEDAKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENVNGVVHLRLIRPLIADESCVACHANANVGSVIGVMDI
                     SHSLEGVQKDISKTSQSYIIIFTIALIFTLCVVLLMLKVVVGKPVLELLNHAKELAQG
                     SGNLKARISVKGQDEIALACGYINQFIEKTHKAVSGASHNSKNVEKQSNLLNSNAISL
                     SDISSQSHKQIDQSFKLGANVGNELGELASLSNKANSANEKSFLLLEQMLKSLFNVAN
                     KVSTVSQNENELAKKVENMVNQAGNIQKATQMMDEIADKTNLLSLNAGIEAARAGAFG
                     RGFSVIAEDVRQLAQNSGEFLGNVAQITKELLQSINEVSAELKKNAQSVQALNDDTAL
                     LVDDANEVKLCNEDARALVTQCTEKIKISQENIQNLLSRMQENVEVSEKNEEISKILL
                     QVADELKIVCHNLESELNQFQI"
     gene            9943..10377
                     /locus_tag="ACHDOB_000978"
     CDS             9943..10377
                     /locus_tag="ACHDOB_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HFN3325904.1"
                     /translation="MKKTLQIALAAAFFAGCASTSVTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGTFKISNENGKLVLSNDEMKIFFK"
     gene            10476..11453
                     /locus_tag="ACHDOB_000979"
     CDS             10476..11453
                     /locus_tag="ACHDOB_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agamatine deiminase"
                     /protein_id="HFN3325905.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKAVS
                     EFQKVLLIAPKQSDFENFKDIKNVEYFKCDTNDTWIRDFGAIDIVENGRFKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDTKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLIELPIPKPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPNHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            11450..12337
                     /locus_tag="ACHDOB_000980"
     CDS             11450..12337
                     /locus_tag="ACHDOB_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HFN3325906.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKKQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            12334..13206
                     /locus_tag="ACHDOB_000981"
     CDS             12334..13206
                     /locus_tag="ACHDOB_000981"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HFN3325907.1"
                     /translation="MKIALIQQKFHSNKEQTIKKTCEFIEEASKQGAELICLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLITSLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(13218..>13728)
                     /locus_tag="ACHDOB_000982"
     CDS             complement(13218..>13728)
                     /locus_tag="ACHDOB_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HFN3325908.1"
                     /translation="NDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLP
                     RNSAAQKNSFNHFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYVGQIADNNIAI
                     HNIWGLRKDTTQRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIK
                     SYLENIQNK"
BASE COUNT         4929 a         1708 c         2641 g         4450 t
ORIGIN      
        1 aaaaggacaa atcagtgaat aattcaaata atatttttca gcaaaagcgt atacttttgg
       61 ctgttgtgat ttctttttta ttttttgttg tttatgatta ttttttcatt ccaaagcaac
      121 ctttaaaaat agaacaaaac attacacaac aaaatcaaca aaacacaagc ataaataaca
      181 ctcctaatat acaaaatacc accacaaata ctccaagtgc agctttagtt tcgcaagata
      241 gtgtgatatc taaggttcaa agcaagcatt ttgaagcaca aattgactct tttggtagaa
      301 tttctgcttt ttatttaaaa gataaaaaat accaaaatga gaaaggagaa tttataaatc
      361 ttgttagcaa ggaaaatagt ccttatcctt tagaaatgcg ttttagtgat ccaagtatta
      421 actcagaggc ttttaaaatt ccttatgttg ctaacgctag caatcttttt gttgatgaaa
      481 atggaagtca agttttaaaa ctcactcaaa atctttctgg attgaaaatc gaaaaagata
      541 ttacttttta tccaaaagga aattatgaga tagaagttaa actcagcaag aatgcaaatt
      601 attttataag tccaggatat cgtccaaata ttgccgtaga tagttataca gttcatggtg
      661 ctttggtaat ggataataaa gaaaccatcg aaacttataa agatggagat gtagaaaagg
      721 atgaaagtgc taataatgtc gtaatgactt cggcttttga tagatactat gcaactttct
      781 tttataattt tgataaacct ttaaatgtgg caattagcaa ggatgctaat aaaaacccta
      841 tagtttttgc ttatagtgat aatgaattta aagcaggggg ttatataggt tctaaagaac
      901 atgtgatttt aagaagtata gatccacgcc ttgaagcagt tgttgaatat ggttggttta
      961 cttttattgc taagcctatg tttgagtttt tgaatttctt gcatcagtat ataggaaatt
     1021 ggggttgggc tatcgttgtg atgactttaa ttgtgcgtat tattttattc ccgctaactt
     1081 ataagtctat gatttctatg aataaactta aagatcttgc tcctaaaatg aaagatatta
     1141 gagagcgtta caaaggcgat ccacaaaaaa tgaatatgca catgatggag ctttataaaa
     1201 aacatggtgc aaatcctatg agtggttgtt tgcctatact tttacaaatt cctattttct
     1261 ttgctattta tcgcgttttg cttaatgcta ttgagttaaa agcagctcct tgggcgtttt
     1321 ggatacatga tttatcggta atggatcctt attttatttt gcctatttta atgggtgtaa
     1381 cgatgttttt acaacagctt attacaccta tgactataca agatcctatg caagctaaga
     1441 ttatgaaatt tttaccagtg atttttactt ttttctttat cactttccca gcaggactta
     1501 cgctttattg gtttgtaaat aacctttgtt ctttggttca acaatgggtt atcaataaaa
     1561 tatttgccaa agaacatcac aaaaaacaag cggagcatga aaaatgaaaa tcgaagccat
     1621 tgatcttcaa agtgccttaa cagaagcttc aagaagttta gaatgttctg tgatggactt
     1681 agaatatgag attattcagc atccaagaaa aggttttttt ggatttggaa gaaaaaaggc
     1741 aattatagag gctaaagcaa aaaaaaggat tttgaaaaaa aatcctaaaa aagaatttgc
     1801 aagttcaaaa aatcacaaac cagaaacaca tgagccaaaa caagaaaaca agattgaaat
     1861 aaaaaatgaa aaaaataaaa ttcaaaaaga aaaatacaca gtaaaaagtg atgaaatttt
     1921 tgatagtttt catcgagaaa gcaaaggagt gcgtaatact caggatattt tagatgagat
     1981 tcgtattcag cttgtaaaac ttttagaaag ctcccagttt aaaatagagc ttagtgaact
     2041 tagaatgtat aatgaagatt gtgttttgat tcgattggat ggggaagatg ctgctttgat
     2101 gataggcaaa gaagcgcatc gttacaaggc tatttcttat cttttgcata attggatcaa
     2161 tttaaaatat aatcttttag tacgccttga gatcgctcaa tttttagaaa atcaaattca
     2221 aggtatgcag ctttatttac aaagcgtgat tgaaaaaatt aaaattcatg gacgcggaca
     2281 aaccaaacct ttagatgggg ttttgataaa aattgcttta gagcagttaa gagctgaatt
     2341 tccagataaa tatgtaggaa ttaagcaaaa taatgatcaa agatttgttg taataaacga
     2401 ctttttcaaa aaagatgagt gatactatag cggctattgc cacagctcat ggtgtgggtt
     2461 cgatttctat tgtaagatta agcggtgaaa gggctttaga atttgcctta aagcttagcc
     2521 acaaaaccaa actcaccccc cgccatgcta cttttacaaa actttttaat caaaataatg
     2581 aaattattga tgaagctata atgatatatt ttaaagcccc ttatagtttt acaggggaag
     2641 atatagtaga gtttcaaact catggaggat ttagtgtgag tgaagtttta ctcgaagaac
     2701 ttgtaagttt aggagcaaga cttgctttag caggggaatt tagcaaaaga gcgtgtttaa
     2761 atggtaaaat gactccttta aaagctttaa atatacaaga tctcatactt tcaaaatctg
     2821 cacttgcagc taaaattata gcacgcaaca tgcaaggaaa cttaggagaa cttttagaaa
     2881 aaattcgcac agatttggtt aaaaccttgg cttttgtaga aactagcatt gattatgctg
     2941 atgatgattt accttctgat ttattagagc aaatttctac tatgtgtgaa gaaaattcta
     3001 aaattttaaa agaaatttat acgctttctc aaagcaaaaa aggactcata gaaggtttta
     3061 aaatcgctat tgtaggtaag ccaaatgtag gcaaatcttc gcttttaaat gccttgcttt
     3121 cttatgaaag agctattgtt tcagatatag caggcaccac tcgtgatact atagaagaga
     3181 gctttaaatt aggaacgcat ttattacgca ttatagatac agcgggtatt agggaaagta
     3241 aagatgctat agaacaaatc ggcgtagctt taagtaaaaa aagtttagaa gatgcagata
     3301 ttattttggc agtctttgat gcttcaagag tgcaagataa agaagatgag aaaatttttg
     3361 acttattagc aaatactgat aaaaaaatct tttggatttt aaataaaagt gatttagaaa
     3421 atgttttcaa aaatactcaa aataaaaatt ttatcaagct tagtgctcaa aaagatatca
     3481 ctttgttaaa agaagaattg caaaattatc ttaattcttt tgatagcgaa ggtattatgg
     3541 taagttcttt agatcttatt aatgcttgca aaatttcaag tgaagcgatt tttagagcta
     3601 aaggactttt agaggaaagt tctttagaac tttttgcttt tgaacttaat ttagctatta
     3661 atgaacttgc aagatttacc aaagattttc aaagagatga aattttagac gaaatgtttg
     3721 gtaatttttg tttaggaaaa tgaaaggata aaaatggata aagaaaccat aaaagcacat
     3781 aaaatcagcg atgaagaata tgcacaaatt ttagaaattt taggacgaga accaaatctg
     3841 ttagaacttg gggttatttc tgcgatgtgg agtgagcatt gctcttataa atccagtaaa
     3901 aaatatctta atggttttcc aactaaagca ccttgggtga ttcaaggccc aggagaaaac
     3961 gcaggggtta ttgatatcgg gcaaggtatg gcagcagttt ttaaagtaga aagtcacaat
     4021 catcctagct ttatcgaacc ttttgcaggt gcggctacag gagtaggggg aattttgcgt
     4081 gatgttttta ctatgggtgc aagagtggtt gcggggctaa attctttaaa atttggcgat
     4141 attcatgatg aaaaatgtgg caaacatcaa aaataccttg ttaaaggcgt ggtaaatgga
     4201 atttctcatt atggaaattg catgggtgtg ccaactatag gtggagaatg tgcttttgat
     4261 gagtgtttta atggaaatat cttagttaat gcctttgctt taggggtttg taaaagtgaa
     4321 gatatctttt atgctaaggc tgaaggtgta ggaaatcctg tgatttatgt gggttcaaaa
     4381 acagggcgtg atggacttgg tggagcggtt atggcaagtg atagcttcaa tgaagaaagc
     4441 aaatctttgc gtcctacagt gcaaattggc gatcctttca gtgaaaaact tcttatggag
     4501 gcttgtttag agctttttaa aaccgattat attgtgggta ttcaagatat gggtgctgca
     4561 gggcttactt caagttcttt tgaaatggca ggaagaagtg gcagtggcat gaaactttac
     4621 ttagataaaa ctcctatgcg tgaaagcggt atgactcctt atgagttaat gcttagcgaa
     4681 tctcaagaaa gaatgcttat ttgtgcgaaa aaaggctatg aagataaggt tatagaaatt
     4741 ttcaaaaaat gggatttaga tgctgtggtt atgggtgaag ttaccaatac aggaaaaatg
     4801 gagctttttt ggcatgatga gcttgtaggg cttattccta tcgagccttt aagtgaaaag
     4861 gcaccgattt taagccgtcc tacaagcgag ccaaaatatt taagtgaaat taaaaattat
     4921 aaatttgagt taaaatcaag cattcaagag ctttttatac aaatgcttca aaatgaaaat
     4981 attaataata aagcttttat ttatgatcaa tttgattcaa gcgtgcaaac caataccata
     5041 aaagctgatg gaaaattagg tgctagtgtt attcgtatca aagaaaatgg tgcaagtgtg
     5101 gctatggcta tagaatgtaa ttcacgctta aattatgtaa atcctaaaat aggagcagct
     5161 ttagcagtag cttctgcagg aagaaaagtt gcttgcacag gagctaagcc tttggcaata
     5221 agtgattgtt taaattatgg aaatccgcaa aatcctgaag tgatgtggca attcgcacaa
     5281 ggttgcgaag gtattaaaga agcttgtaaa gagttaaata ctccagtagt aagcggcaat
     5341 gtttcacttt ataatgaaac tgaaggcgta agtatttatc caagtcctac tatagtaagc
     5401 gtaggggttt tagaagatgc aaataaaacc ttaaaagcta gttttgaaaa agaaaattta
     5461 agcgtttatc ttttgggtga aagtttagga gaatttggcg gatctatggt aatgaaaatc
     5521 caagataaaa aagtatcagg aagtcttaaa gagcttgatt ataaagctga acttgcactt
     5581 tgggatttgc tttataaagc caatcaaaat tctttacttg agtgtgccaa tagcgtagga
     5641 atagggggta ttgctatgac tttggcaaaa atgtttgcta tttctagtgt gggtgcaaat
     5701 ttaacaagtg attttgatga tgaaaaaatg atttttgatg agagtgcaag tcgtgctata
     5761 atagggctta gtaaagaaaa tgaagaagct tttttaaatt tagctaaaga atttggagta
     5821 aaagcttata aattaggtgt gagtacaagc caaaaacatt ttaaacttga tagcattgag
     5881 ttaagcaagg ctgaacttga taagctttat tttgaaagtt ttaaagagca aatccaatga
     5941 ctttagtttt aattatactc gttgttttgg tgttttactg gtattataaa acttggggaa
     6001 aacaggattt tttaaactca gctacaagag gagccaaagg ctttgctaag ggttttgctc
     6061 gtggggttat ggaagaaaga atggatgagt ttaaaaggcg tatgaattac tatgttatcg
     6121 cacttttggc aaaaattgca aaaagcgatg gcagggtaag tgaaaatgaa gctgaaatga
     6181 tcaaagatct tttagatgca aatgccaaag atgaaaaaga aagagctttt ttaaaagcaa
     6241 gttttaacga acataaagaa aatttaagcg atgcttttta tgtggcaaaa gattttttaa
     6301 aagaagtgcc tttgcctaaa aatgagcgtt ttaatgtctt gcgtgtgctt gtttttatgg
     6361 ctttaatcga tgcagatttt aatgctaaaa agcgtgaaat tttagagcaa atcgctaaag
     6421 cctttgatat agcaaaaagc gagctagacg cttttatagc aagtctttca aatttaaaaa
     6481 gtactaaaaa agaattaagt cttgatgaag cttttgctat tttagaactt ccaaataatg
     6541 cggatttaaa tgcggtaaaa aaacaatacc gcaatttagc aaaaaaatac catcctgata
     6601 ttttaaatgc aaacaatgtt agcgaagaag agcttaaaat cggcgtagag aaatttcaaa
     6661 aaatcaacga agcttatgaa aaagttaaaa aacatttaga aaggtaaaaa tgagagcatt
     6721 acttagtgtg agtgataaag aaggcatagt agaatttggc aaagagcttg aaaatttagg
     6781 ttttgagatt ctttcaactg gggggacttt taagctttta aaagaaaatg gaataaaagt
     6841 tatagaagtg agtgatttta caaagagtcc tgagcttttt gaagggcgtg tgaagacttt
     6901 gcaccctaag attcacggtg ggattttgca taaaagaagc gatgaaaatc atatcaaaca
     6961 agcaaaagaa aatgaaattt taggcattga tctagtttgt gtaaatttat atccttttaa
     7021 aaaaactacc attatgagcg atgattttga tgaaattata gaaaatatcg acataggcgg
     7081 acctgcgatg ataagaagtg cagcaaagaa ctataaagat gtgatggtgc tttgcgatcc
     7141 acttgattat gaaaaagtga ttgagacttt aaaaaaaggt caaaatgatg agaattttcg
     7201 tttaaatttg atgataaaag cttatgagca tacagcaaat tacgatgctt atattgcaaa
     7261 ttatatgaat gaacgcttta acggaggttt tggagcgagt aaatttatag taggacaaaa
     7321 agtatttgat acaaaatatg gagaaaatcc acatcaaaaa ggggctttat acgagtttga
     7381 tgcctttttt agagcaaatt tcaaagccct taaaagcgaa gcaagtttta acaatctaac
     7441 cgatattaac gcagctttaa atttagctag tagtttcgat aaagctccag ctattgctat
     7501 agtaaaacat ggaaatcctt gcggttttgc tataaaagaa aatttagtac aaagctatat
     7561 acatgcttta aaatgcgata gcgtcagtgc ttatggagga gtggttgcaa tcaatggaac
     7621 tcttgatgag gctttagcaa ataaaatcaa tgaaatttat gtagaagtaa tcattgcagc
     7681 caatgtagat gaaaaagctt tagccgtgtt tgaaggtaaa aaacgcatta aaattttcac
     7741 tcaagaaagt ccgtttttaa ttcgcagttt tgataaatat gattttaaac atattgatgg
     7801 gggttttgta tatcaaaaca gcgatgaagt aggcgaagat gagcttaaaa atgcaaagct
     7861 tatgagtcaa agagaggcaa gtaaggaaga attaaaagat cttgaaatcg ctatgaaaat
     7921 agcagcattt accaaatcaa acaatgttgt ttatgtaaaa aatggcgcta tggtggctat
     7981 aggtatgggt atgacaagta gaatcgatgc agcaaaggca gcaatcgcta aagctaaaga
     8041 aatgggactt gatttgcaag gttgcgtttt agcaagtgaa gccttttttc cttttagaga
     8101 tagcatagat gaagcaagta aagtaggggt taaagctata gtagaaccag gcggaagtat
     8161 aagagatgat gaagtggtaa aggcggctga tgagtatggt atggcgcttt attttacagg
     8221 agtaagacat tttttacatt aagtttaatg gaatgttatg ttttttacac ataattcaat
     8281 aaaaattaaa taaattatgt gtaaaatatt tccgaaaaat tttattttta ggaaactatg
     8341 atgtttaaaa ctataggatt taaggtttct gctgcaattt ttgtggtgtt gcttataagt
     8401 tttattgtaa tgcaagtgat tttaaatttg gactttaaaa atactgccaa taaaatgagc
     8461 agggcaaatt tagataccgt aagtacttct gtttttcaaa caatgagaat ggctatgaat
     8521 ttaggagatc ctgaaaaaat taaagaagcc attgaagatg caaaaagtat agagggtatt
     8581 agtgatatta aaatttatcc ttcaaaagat actatagatc tttttgagat gaaagcccct
     8641 caaatttcaa atgataagcg tattatagaa caattttcaa atcctaaaat tcaagcttta
     8701 gaagaaaatg taaatggtgt tgtgcattta agattgatac gccctttgat tgcagatgaa
     8761 agttgtgttg cttgtcatgc aaatgctaat gtagggagtg tgataggggt tatggatata
     8821 tcgcattctt tagaaggtgt tcaaaaagat ataagtaaaa ccagtcaatc ttatattata
     8881 atatttacta ttgctttgat ttttaccctt tgtgtggttc ttttaatgct taaagttgtt
     8941 gttggaaagc ctgttttaga gcttttaaat catgctaaag aattagctca aggaagtggc
     9001 aatttaaaag ctcgtatttc agttaaaggt caagatgaaa ttgctttagc ttgtggatat
     9061 atcaatcaat ttatcgaaaa aactcacaag gcagttagcg gtgcaagtca taattcaaaa
     9121 aatgtagaaa aacaaagcaa tcttttaaat tcaaatgcta tttctttaag tgatatcagt
     9181 tcacaaagtc ataagcaaat agatcaaagt tttaaacttg gtgcaaatgt tggcaatgaa
     9241 cttggagaac ttgctagttt gtcaaataaa gcaaatagtg ccaatgaaaa atccttttta
     9301 ttattagaac aaatgcttaa atctttgttt aatgttgcta ataaagtatc aacagtatcc
     9361 caaaatgaaa atgaattggc taaaaaagtt gaaaacatgg tcaatcaagc aggtaatata
     9421 caaaaagcaa ctcaaatgat ggatgagatc gcagataaaa ccaatttact atccctaaat
     9481 gctggcatag aagcagctag ggctggtgca tttggacgag gtttttctgt aattgctgag
     9541 gatgttaggc agttggctca gaacagtgga gaatttttgg gaaatgtagc tcaaattaca
     9601 aaagagcttt tgcaaagtat taatgaggtt agcgcagaat taaagaaaaa tgctcaaagt
     9661 gtacaagctt taaatgatga caccgcttta ttggttgatg atgctaatga ggttaaatta
     9721 tgtaacgaag atgctagggc tttggtaact caatgtactg aaaaaataaa aatttcccaa
     9781 gagaatatac aaaatttact ttctcgtatg caagaaaatg ttgaagtaag tgaaaagaat
     9841 gaagaaattt ctaaaattct gcttcaagtt gcagatgagt taaaaatagt gtgtcataat
     9901 ctcgaaagcg aacttaacca atttcaaatt taaaggaata aaatgaaaaa aacgcttcaa
     9961 attgctttag cagcagcttt ttttgcaggt tgtgctagta cttctgttac ttcatctact
    10021 tctaaaggta ataatgaact tgtgcaaaat cagcttttca aaatagaaaa aattatagtt
    10081 aatggtaaaa cttttgatcc aaaaaacgca gaggaaagtc caaatatcag ttttgaaaat
    10141 aataaatttt atggttattc aggatgcaat cgtttttttg gttcttacca aactaaggcg
    10201 gatactttac aaatcgaagg tgatcgcgta gcttcaactc aaatgctttg tcacccaatg
    10261 gatgtaatgg attttgaaaa ttctttcctt tcaaatttca aaggaacttt taaaatttca
    10321 aatgaaaatg gaaaacttgt tttaagcaat gatgaaatga aaatcttttt taaataatac
    10381 cctaaagcct cgaaatatcg aggcaaactt cttaaatttg acaaaagtct aaaaaatgat
    10441 acaattataa ttttattatc aaaaaaggta gttaaatgat aaaatcaatt cctgaatgga
    10501 gtgagcaaga atacctcatg ctttctttac ctcatgaaaa aagcgattgg aatccctact
    10561 tagaggaaat tttacaaagt tataaagaat ttgtaaaagc agtgagtgaa tttcaaaaag
    10621 ttttacttat agctcctaaa cagagtgatt ttgaaaattt taaagatata aaaaatgtag
    10681 agtattttaa atgtgatacc aatgatactt ggatacgtga ttttggagct atagatatag
    10741 tggaaaatgg tcgctttaag gctcttgatt ttacttttaa tgcttgggga aataaatttc
    10801 aaagcgagct tgataatgct gtaaattcta agctttttaa agaaaaattt aaagaggagc
    10861 ttaaaaaggt tgattttatt ttagaaggag gaagtattga ctttaatgga gagggtgtga
    10921 tgcttacaag ctctcattgt cttttaaatg aaaatagaaa ttctcatcta aacaaaactc
    10981 aaattgatac aaaattaaaa gaaatttttg gcttaaaaca aattatttgg ctagaaaatg
    11041 gttttataaa aggtgatgat acagatcatc atatcgatac cttagcaaga tttatagata
    11101 aaaataccat agcgcattgt atttgtgaag atgaagagga tgagcattat ttgcctttac
    11161 aaaaaatgaa agaagagctt aaaaaaacag gctttgattt aatagaactt cctataccta
    11221 agcctttata ctatgaagga agaagattgg gggcgactta tgcgaatttt gtttttataa
    11281 ataatgcttt aattgtgcct ttttacaagg ataaaaatga tgaaatcata gctaaaagac
    11341 tttctaaagc tttacctaat cataaaatta taggagtaga tgcaagagtg tttttacgac
    11401 aaaacggttc tttgcattgt tcttgtcaaa atcgtttcaa aggtttaaga tgagtttgca
    11461 aaaaaaagca actcttgtag caagtttatg tgctattgtt ttagccttgg ttaaatttat
    11521 agtaggctta acaagtggtt ctgttgcagt gctttcaagt gcgattgatt ctttaatgga
    11581 ttttgctatt tctgctttta attttttagc tcttaaaaaa agctcacaaa aggcgaatga
    11641 aaattataat tttggttttt ctaaaattga agctttaatg ggtttgttag aaggtgtttt
    11701 tatagttggc gtggggattt ttatttttta tgagagtatt ttaaagattt attataaaga
    11761 agaaattaaa gatttaaatt caagcatcta tgtgatgatt tttgctttaa ttatgacttt
    11821 ttttcttgta ctttttttaa attatgtagc taaaaaaacc aaaagtttga ttatagaaag
    11881 tgatgctttg cattacaaaa cagattgctt aaccaatgct tgtactttag gggctttggt
    11941 tttgatttat tttacaaatt tacatattat tgatgctatt tttgggatag tgatcagtct
    12001 ttatacggcg ttttctgctt ttaaaatcat taaaaaagct ttggcttttt taatggatga
    12061 ggctttacct aagaaacaag tggataaaat ttgtactttg atttctaata atcctgaaat
    12121 aatttcctat catgaattaa agacgcgtaa aactccaagt tgtaattatt taagcgtgca
    12181 tttggttttt tgccctataa tttcgctttt aaatgcgcat aaaatttcag atgaaataga
    12241 agaaggtgtg cgtaagatgt ttgaaaatga aaaatgggat atacaaattc atttagatcc
    12301 ttatgatgat gcagaacaag aaaggcaaag acaatgaaaa tcgctttaat acaacaaaaa
    12361 tttcactcaa acaaagaaca aactataaaa aaaacttgcg aatttataga agaagcctct
    12421 aaacaaggag ctgagcttat ttgtttggga gaacttcatc aaagtgagta tttttgtcaa
    12481 agtgaaaatg tggatttttt tgactatgct aatgattatg aaaaagatgt gaaattttgg
    12541 gcaaatatag ctagaaaaaa tcaaatagtg cttattactt cattatttga aaaacgaagt
    12601 gctggacttt atcataatac tgcagtggtt tttgaaaaag atggttctat agcaggcaaa
    12661 tatcgcaaaa tgcacatacc tgatgatcct tgtttttatg aaaaatttta ttttactcct
    12721 ggagatttgg gttttgaacc tataaataca agtttaggca agcttggagt gcttatttgt
    12781 tgggatcagt ggtatcctga agcagcaaga attatggctt taaaaggagc tgagattctt
    12841 atttatccca cggcaattgg ttggtttgat aaggataaag atgaagaaaa acaaagacag
    12901 ctcaatgctt ggcttggcgt acaaaaagga catgctatag ctaatggttt atatgtagta
    12961 gctatcaata gagtaggttt tgaaaaagat gtaagcgggg tagaagaggg cattagattt
    13021 tggggaaatt cttttgtttt tggccctcaa ggtgaagaac tttgtctttt agattctcaa
    13081 aacgaatgtg taaaaatcat agaaatagat aaaaaaagaa gtgaaaatgt gcgtcgttgg
    13141 tggccttttt tgcgagatag acgcatagaa tattttgcag atttaactaa aagatttatt
    13201 gattaaatca ataaatctta tttgttttgt atattttcaa gatagctttt tatttgctct
    13261 ttttcttgtt cgtttaaatt tataaaactt atttctttaa gtcttgataa aagcaaatta
    13321 tcttctaaaa tttcattttt tcctatttct aaagaagtga tgacgctaga acttatgaga
    13381 agtctttggg ttgtatcttt tcttaagccc catatattat gtatagcaat attattatct
    13441 gcaatttgtc ctacataaag cataatatgt ccaggtaaat aaagtaaact aagataagct
    13501 ttcccaaagc ggtttaaaaa atcttttttt tgagaattgc taagagtgct tatatcaaaa
    13561 tgattaaaag aatttttttg tgcagctgaa tttcttggta gataaagtcc aaaagctgaa
    13621 aagatatcac gagttagtaa agaacaatct ctttcaaaat tataaccgcc ccagccataa
    13681 ggcaaattta aaacttgtga aagttgattt tttaaatttt tatcattg
//
LOCUS       DAZAND010000045        13542 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.045, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000045 DAZAND010000000
VERSION     DAZAND010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13542)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13542)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13542
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.045"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            69..353
                     /gene="gatC"
                     /locus_tag="ACHDOB_000983"
     CDS             69..353
                     /gene="gatC"
                     /locus_tag="ACHDOB_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA];
                     GO_process: GO:0006450 - regulation of translational
                     fidelity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HFN3325909.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIVQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            421..984
                     /locus_tag="ACHDOB_000984"
     CDS             421..984
                     /locus_tag="ACHDOB_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009403 - toxin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HFN3325910.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIVCLLAGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHASEKLQDIVSDLNNTQKGE"
     gene            986..1459
                     /locus_tag="ACHDOB_000985"
     CDS             986..1459
                     /locus_tag="ACHDOB_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HFN3325911.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            1460..2965
                     /gene="lysS"
                     /locus_tag="ACHDOB_000986"
     CDS             1460..2965
                     /gene="lysS"
                     /locus_tag="ACHDOB_000986"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HFN3325912.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFNKDSVGEELYAIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNAEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLVVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMIDFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKVDGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            2962..4206
                     /locus_tag="ACHDOB_000987"
     CDS             2962..4206
                     /locus_tag="ACHDOB_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HFN3325913.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVIGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSNGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
     gene            4203..4748
                     /locus_tag="ACHDOB_000988"
     CDS             4203..4748
                     /locus_tag="ACHDOB_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HFN3325914.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            4762..5598
                     /locus_tag="ACHDOB_000989"
     CDS             4762..5598
                     /locus_tag="ACHDOB_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HFN3325915.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSENTTPQASTPKQEVTQTAKPKEE
                     AKKQTAVKKEKESTKQIPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            5595..6383
                     /locus_tag="ACHDOB_000990"
     CDS             5595..6383
                     /locus_tag="ACHDOB_000990"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HFN3325916.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAINALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIRDKREMIKNAMQQALILK"
     gene            complement(6457..7356)
                     /locus_tag="ACHDOB_000991"
     CDS             complement(6457..7356)
                     /locus_tag="ACHDOB_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HFN3325917.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKRNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            7446..8261
                     /gene="lgt"
                     /locus_tag="ACHDOB_000992"
     CDS             7446..8261
                     /gene="lgt"
                     /locus_tag="ACHDOB_000992"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HFN3325918.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            8330..9112
                     /locus_tag="ACHDOB_000993"
     CDS             8330..9112
                     /locus_tag="ACHDOB_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HFN3325919.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            9096..11087
                     /locus_tag="ACHDOB_000994"
     CDS             9096..11087
                     /locus_tag="ACHDOB_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HFN3325920.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            11080..11805
                     /locus_tag="ACHDOB_000995"
     CDS             11080..11805
                     /locus_tag="ACHDOB_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HFN3325921.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            11833..>13542
                     /locus_tag="ACHDOB_000996"
     CDS             11833..>13542
                     /locus_tag="ACHDOB_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HFN3325922.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKNKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSIQNAQICILNLFKSGFIPKQDLLKALKILEKISK
                     NTEIFDFISQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQN
                     LEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKK
                     EWQNILESSHFNADLKEFIDKLDKSVNIQDFIKDKPLIQNIALCELKNFSSAKNKISA
                     LIKKIEIKSHLDFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLT
                     QKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVE
                     KIDFLCVSAKMASDFYKSLAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKEL
                     HLELKNILSEYEMQNRLIKENKQGVSEENQKLLLELQKQNTLLKEAQDEISNSVAKLK
                     NIDSGIDNLVLLLVKKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDILRE
                     IKFE"
BASE COUNT         4751 a         1617 c         2615 g         4559 t
ORIGIN      
        1 cctaaacaat ttaaagcttt ttatgatata attttcaaaa ttttaacttt tttattaagg
       61 tttaagaaat gcaaatagat gagaaattat taagcaagct tgaaaaatta agtgctttac
      121 aaataacaaa aaacagaaat gaaaccattg tacagttaag tgaaattgtg aattttgttg
      181 aaaaattaaa cgaacttgat ctagattccc aagagattac tgtaagcact ataaaaggtg
      241 gagctccttt gaggattgat gagataagaa atagcaatgt tattgatgag gttttagatt
      301 gtgctccaaa aaaacaagaa catttttttg ttgttcctaa aatcatagaa tgattaactt
      361 agcatttagt gcttatttgt agaataaatt taaaacaaaa aaaatcagag agtgattgaa
      421 atgaattttt attggtttga tgcttttatt ttaggattta ccttgctttt agggcttaag
      481 ggtattatca atggtttgat aaaagaaatt tttggacttt tgggtattat tggtggtgtt
      541 tttattgctt caaaatacgc aactcaagcg gctgaattta tacaaagtac tttttataag
      601 atagaaaatc aaagcttagc tggatttgct ggatttttgg ccatattaat tattttttgg
      661 atagtttgtt tgttggcagg taattttctt tctaagttga tcaaattaag tggcctaggt
      721 tttttagatc gtattggtgg ctttatattt ggtggggcaa aaatcttttt aatttttgca
      781 attttagttt tttgtgtagc aagaatcgat tttttaaatg ataaattaga taattttgct
      841 aaaaatagct atactttgaa tttgcttaaa gaaactggat cttttattat gaatcaacct
      901 ttaacagaaa atagtctaga tcatgctagt gaaaagttgc aagatattgt aagtgattta
      961 aacaatactc aaaaagggga gtgatatgct gatagaaaat gtggaatatg atgttttact
     1021 tgagagattt aaaaaaatat taagacaagg cggacttaaa tataccaagc aaagagaagt
     1081 acttttaaaa actctttatc acagtgatac tcattacaca cccgaaagtt tatatatgga
     1141 aatcaaacaa gctgaacccg atttaaatgt aggaattgca actgtttatc gtactttaaa
     1201 tttgcttgaa gaagcagaaa tggtaacttc catttctttt ggttcagcag gtaaaaaata
     1261 cgagcttgcc aataaacctc accatgatca tatgatatgt aaaaattgcg gaaaaattat
     1321 agagtttgaa aatcctatta tagaaagaca gcaagccttg attgcaaaag aacatggttt
     1381 taaacttaca gggcatttga tgcagcttta tggtgtttgt ggtgattgta acaatcaaaa
     1441 agcaaaggta aaaatataaa tgtttgataa tattttagag cagcaaagaa tagaaaaagc
     1501 caaggaatta aaaaatttag ggatcaatcc ttatcctcat tttttagaaa aagaaatgtc
     1561 tttaaagact tttaaggata aattttctta tattttagag caagttgaaa aaagagatga
     1621 aagtgtcaat gctgttgttg caggacgttt gaaacttttg cgtatagctg ggaaatcgat
     1681 ttttgcaaac attgaagatg aagatacaaa tttgcaaatt tattttaata aagatagtgt
     1741 aggtgaagaa ctttatgcga ttttgaaaaa gaatttagaa gtaggtgata ttgttttggt
     1801 taaaggtttt ccttttgtaa ctaaaacagg tgagtttagt ttgcatgcaa gtgaagtaaa
     1861 actcgctaca aaagctattg ttcctttacc tgaaaaatat catggattaa cagatattga
     1921 gcaaagatat cgtaaacgtt atgttgatat gataatgaat gcagaagtta gaaaagattt
     1981 tttagtgcgt tctaaagtgg tgagtttgat tcgtcatttt tttgaaaata aaggcttttt
     2041 agaagtagaa actcctatga tgcatccgat tgcaggtgga gcaaacgcta agccttttgt
     2101 aacttttcac aattctttag gcgtagaaag atttttaaga attgctccag aactttatct
     2161 taaaagactt gtagtgggtg gttttgaggc agtttttgaa atcaatcgtt gttttagaaa
     2221 cgaaggtatg gatttaaccc ataatcctga atttacaact atagaatttt attgggctta
     2281 tcataattat aaagatttaa tggatttaac tgaagaactt tttgctttac ttttagataa
     2341 acttaatttg ggaaaaacaa tagaatttga tggaaaaatg atagattttt ctaaaccttt
     2401 tgaaagaatt acttacaaag atgcactttg taaatatggt ggtttggata gggatttaat
     2461 tgaagataag gaaaaaattc ttactaaatt aaaagtagat ggttttgaag cgaatgaaaa
     2521 gcttgaactt ggacatttac aagctgaact ttttgataat tatgtggaag aaaaattgat
     2581 caatcctact tttgtgattg attttcctat ttccataagt cctttatcaa gacgtagcga
     2641 tgaggattct cagattgctg agagatttga gttgtttatt tgtggaagag aattggcaaa
     2701 tggttttaat gagcttaatg atcctcttga tcaatatgag agatttttaa aacaaattga
     2761 agctaaaaat gcaggcgatg aagaggcttg cgaaatggat gaagattttg taaatgcttt
     2821 gggttatgga atgcctccaa cggcagggca gggtataggt atagatagac ttgttatgct
     2881 tttgacaaat aaaaaatcta ttcgagatgt gatattgttt cctgcaatgc gtccattaaa
     2941 atcagaacta aaggagaaag aatgagttta gaaatgtttg ataaagaaat ttttgattta
     3001 acaaacaaag agttagagcg tcaatgcgaa ggtcttgaaa tgatagcgag tgaaaatttc
     3061 actttacctg aagtaatgga agttatagga agtatcttga cgaacaaata cgcagaaggt
     3121 tatccaggta aaagatatta tggtggttgt gaatttgttg atgagattga aactctagct
     3181 attgaaagat gtaaaaaact ttttaattgt aaatttgcta atgttcagcc taattcaggt
     3241 tctcaagcta atcaaggtgt ttatgcggct ttgattaatc caggtgataa aattttagga
     3301 atggatttaa gtcatggtgg acatttaact catggtgcaa aagtaagttc ttcgggtaaa
     3361 atgtacgaaa gttgttttta cggcgtagaa cttgatggaa gaattgatta tgaaaaagta
     3421 agagaaatcg ctaagaaaga aaagccaaaa ttaatagttt gtggagctag tgcttatgca
     3481 agagtgattg attttgctaa atttagagaa attgctgatg aaataggtgc ctatcttttt
     3541 gctgatatag cacatattgc aggtcttgtt gtggcaggcg agcatccaag tccttttccg
     3601 cacgctcatg tagtaagctc aaccacacat aaaactttgc gtggtccaag aggtggtatt
     3661 attatgacaa atgatgaaga gcttgctaaa aaaattaatt ctgccatttt tccaggtatt
     3721 caaggtggtc ctttgatgca tgtaattgct gcaaaagcag taggatttaa atttaatctt
     3781 agcgatgagt ggaaagttta tgcaaaacaa gtaagaacca atgctcaagt tttagctaat
     3841 gttttaatgg atagaaaatt taaacttgtt agcaatggaa cggataatca ccttgtttta
     3901 atgagttttt tagatcgtga atttagtgga aaagatgcag atttagctct tggaaatgca
     3961 ggtattactg caaataaaaa taccgttcca ggagagatta gaagtccttt tatcacaagt
     4021 ggattaagac ttggaactcc agcgcttact gccagaggtt ttaaagaaaa agaaatggaa
     4081 attgtgtcaa attatattgc agatatttta gatgatatta ataatgaaaa attacaagag
     4141 aatattaaac aagaattaaa aaaacttgca agtaatttta ttatttatga aagggctatg
     4201 ttttgatttc accaatggat atgtcgctaa ttaaaataat tggcgatcat tattatataa
     4261 gacgcgataa aattgtaaat aaaattacac atagaggtcg cttatttttt gataaatttg
     4321 aaagagttga tgctccttta aatttaaatg tcatgagaga acacgctgct aaaaaaattg
     4381 ttgtcgctca tgatttaata acaaaagata ataaagtaga aaatattgtc tttgattata
     4441 atggttttaa tgctgaaaga ttttatcacc gtgcacaact tattttaaga gaagaaggtt
     4501 ttataaattt cacagcctat aagactaaaa ctccaggaca tttacatctt tatattcaca
     4561 aaggacacac ggcgttaaac gaaggttatt ctttagcgtc taaactttca atgatgtttg
     4621 caagtaaaat gccagtagaa tggaaggtgt ttcctagtat ggatgtacct agggaattta
     4681 atattttaat attgccttat gaggtttatc aaaaagaacg aggaagttct tggtctaagc
     4741 atatgtaaga aaggacaaat tatggaaaat caaaaaaatg aatttgatga tattatttta
     4801 gaaaaaagta ataaaagtga aaaagtaaaa aaaattcttt tacgagttat tgctttagtt
     4861 attttgtttt tagctatcat gatagttatg aagcttatta atggtagtgg tgatgaaaat
     4921 acgcaaaatc aaagtgtatt gccaagtgaa cctatagcaa ctcaagacaa taacaatgat
     4981 acttcttttg aaagtatgcc aattacagat aatacttcag cagaagatca atttgaggca
     5041 ttaagaaaac aatttcaaga tgaacaaaat acaactcaaa atacaacaac ctctagttca
     5101 aataacaatg atactacaaa ttttgctatg cctgatcaag aagttccagc agaacccaca
     5161 gcaactactt cagaaaatac cactccacaa gcaagtactc ctaaacaaga agtaacacaa
     5221 actgcaaaac ctaaagaaga agcaaaaaaa caaacagctg taaaaaaaga aaaagaaagt
     5281 acaaaacaaa tccctaaaaa agaacaaaat gcaaatgatt tatttaaaaa tgttgatgct
     5341 aaacctgtgc atccaagtgg tttagcatcg ggcatttatg tgcaaatttt ctcagtaagt
     5401 aatttagatc aaaaatcaaa agaacttgct tctgtaaaac agaaaggtta tgattataaa
     5461 ctttataaaa ctacagttgg aggtaaagaa attaccaagg ttttaatagg accatttgaa
     5521 aaggcagata ttgcagcaga acttgctaaa atccgtaagg atattgcaaa agatgctttt
     5581 tctttcactt taaaatgaaa tttttagcag ttataggcga tcctatttct cactctaaat
     5641 cgcctagaat gcataataat gctattaatg ccttagggct tgatagcatt tatacacgct
     5701 atcatttaag aaatgctaac tgtttaagag aagatttttt taaattagga cttagtggag
     5761 ctaatattac tttgcctttt aaggaaaaag ctttagatat tgctgatgtg aaggatgatt
     5821 ttgctagaaa tattggctct gcaaatactt tatgcttaaa agaagataaa atttacgctt
     5881 ataatactga tgctttaggt tttttagagg ctattaagga ttttgataat ataaaaaaag
     5941 ctttgatttt gggtgctgga ggtacagctt tggcgcttgc ttatgcatta aaacaaaaag
     6001 gcgtagaagt gtatatagct aatcgtagta aagaaagatt taaagatttt ttagcttatc
     6061 caacttatct ttataaaaac ttgcaagatt ttgactttga tttggttata aattcaactt
     6121 ctgctggatt aaaagatgaa aatttacctt gtgatagaga gcttttagat agaattttac
     6181 ctaaagctaa atttgctttt gaggtaattt atggcagaga aacacctttt tatagattgt
     6241 gtaaagagta tcatttaaaa attaaagatg gacttgatat gcttttatgg caaggggttt
     6301 ttgcttttga gctttttttt gaaatacgag ataaaagaga gatgataaaa aatgcaatgc
     6361 aacaggcatt gattttaaag tagaatgata gttatttttt tgtataagaa aatcttattt
     6421 tttgtgtgag aaagtttaat tttctcacaa gttttatcat tcaaatattt ctaccccatc
     6481 ttgattttta ctttgattat tttgatttgt tgaagatgga tttgtaggaa tattttgtgt
     6541 aggtgtgttt tcaattgtat tattttgatt agagtttgtt tgaggtagac tttcttcaaa
     6601 agtagcatcg ccatcaaaac tattaaaacc actgtttgta ttaggtatag ttttgcctat
     6661 gtctgttgct tttggaagat tgttataaag tgtatttaat gtatttttat aaaaagctaa
     6721 aaaactttta tcaatttcaa aagcaggttg ctctaaacct ttattaagtt gagttggtac
     6781 ggtggagata gtagttttaa acatattaac cccatcatca tttttaatag gatagttaag
     6841 cgcaactaaa gaatctagtt tggtgctgct tgaaagattg gttgaatttt gtggattgtg
     6901 tgcatctata aaatctattt tacctttaaa atttatacct aaattggatt ttacataatc
     6961 tccactcata aaattgcttg ttttttgtgc atttttttct tccgtataaa tactgattga
     7021 acttttaaga gtatagtctg gattagtagt aactatttta tagcctttta gttgagcgat
     7081 ggttttgatc tgctcttcta aatttcgttt taaaagatca atttcttttt ctatgcgaat
     7141 tttaagcact gaattttcaa aataatcaga ataattgtta ttttgttcta tattaatagg
     7201 ctcaagagca atgcttactc cagaatcaat aggttcaacc tttgttggaa cttggggttt
     7261 aaaatttggc atagaaacat tgacaaaatt actgcttgta cccccacaag ctgctaaaat
     7321 taacatacta ctagcaagta aaatatattt tttcattttt tacctttatt taatgtgttt
     7381 gtgttaatta tagcaagtta aagttttttt gttatatttt tataaaagaa aattaggaaa
     7441 gatatatgga attttggcag catatttatt caaattttaa tgttatagct tttagcatct
     7501 ttggtttaaa ggtgcattgg tatggcatta tgtatgttat agctttgctt ttggctttgc
     7561 ttttggctaa attttttgta agaaaatttc aactagacat taatgaaaaa catttggata
     7621 gttattttat atgggttgaa ataggggtta ttttaggtgc aaggcttgga tatattttga
     7681 tttatgatgc aaatactatg tattatatta ctcatccttg gcaaattttt aatccttata
     7741 ttaatggtga atttgtaggt attcgaggta tgagttatca tggagcaatt ataggatttt
     7801 tgatagctac tttattgttt tgtaaaaaat ataaaacaaa tccttggatt tttcttgatt
     7861 tggttgcttt aagtgttcca ttggcttatg tttttggtcg tataggaaat tttttaaatc
     7921 aagagctttt tggtcgcatt acaaatgtgc cttggggaat ttatgttgat ggagtattgc
     7981 gccatccatc gcaactttat gaagcatttt tagaaggtat tgttgttttt attatagttt
     8041 atttagcaag atttaagcaa agttttcaag gggaattgat tcttgtttat gctggtgctt
     8101 attcattagc aagatttata tgtgaatttt atcgcgagcc tgattttggt ataggttttg
     8161 ttttatgggg tatgagtatg gggcaaattt taagttttat aatgtttata acagctttgt
     8221 tagtttatat ttgtataaag tttaaaaaag taaatattta atctatctta aagacttttg
     8281 taatataatg aaatggattt ttttaatttc tttttacaaa ggagtaaaga tgcgtgagct
     8341 tatcgaaggt tatttgggta agagcattga gggcaaaaaa agtaaaatgc ctgcgaaatt
     8401 agactttatc caaagtgcct cagggctttt tttaggtctt tttatgtggg tgcatatgct
     8461 ttttgtttct acaattttag tcagtgagga tttttttaat tctgtagtgc attttttaga
     8521 attaaaattt gtttacgata atcctgttat gagttatctt acttcatttt tagccgcctg
     8581 tgttttagtg gtttttttcg ttcatgcttt acttgcaatg agaaaatttc ctattaatta
     8641 ccgtcagtat caaatactaa gaacacacag taaaaaaatg aatcacagcg atacttcgtt
     8701 atggtgggtt caagctttta caggttttat tatgtttttc ttaggttctg ctcatcttat
     8761 ttttattgta accaatgcag ataaaatcag cggcgatatg tcaggagata gggttgtaag
     8821 tcattttatg tggctttttt atgctgttct tttagtctgt gttgaacttc atggaagtat
     8881 agggctttat agactttgtg ttaaatgggg ttggtttgaa ggaaaaaatg taaaagaaag
     8941 tcgcaaaaag cttaaaactg ctaaatggat aatcagtatt ttcttcctag ttttaggtgt
     9001 gttaagtctt gcagcattta taaaaatagg ttatgaaaac taccaaaatc aaacccaaac
     9061 tactgcgatg ataaaaaact acaatggagc aaattatgaa tatacaatat agtgatgctt
     9121 tagtaatagg cggaggatta gcaggtctta gagcggctat tgaagtagca aagagtggcc
     9181 aaagtgtaac acttttaagt atttgtccag tgaagcgttc tcactctgca gcggtgcaag
     9241 gaggtatgca ggcaagttta gcaaatgggg caaaaggtga gggtgataat gaagatcttc
     9301 acttcgcaga tacagtaaaa ggaagtgatt ggggctgtga tcaagaagta gcaagaatgt
     9361 ttgctcaaac tgcaccaaaa gcagtgcgtg aacttgcggc ttggggtgtg ccttggacta
     9421 gagttactaa aggtccaaga actgttgtaa tcaatgcaca aaaaactgtg attgaagaaa
     9481 aagaagaagc gcacgggctt attaatgcta gagattttgg tggaactaaa aaatggagaa
     9541 cttgctatat cgcagatgca acagggcatt gtatgcttta tggtgtagca aatgaagcca
     9601 ttaagcacca agtaaagatc atcgatagaa tggaagcggt aagaatcatc catgatggta
     9661 aaaaatgctt aggtgtaatt gctagagatt taactaatgg acaactcatt gcttatattg
     9721 caagaggaac catgatagca acagggggct atggtagaat ttataaacaa actacaaatg
     9781 cggtaatttg cgaaggaacg ggtgcagcca tcgctcttga aacagggctt tgcagacttt
     9841 caaatatgga agcagtgcaa tttcatccaa ctcctattgt accaagcggt attttgctta
     9901 ctgagggttg tcgtggtgat ggcggaattt tacgtgacgt ggatggatat cgttttatgc
     9961 ctgattatga accagagaaa aaagaacttg caagccgtga tgtggtaagt cgtagaatga
    10021 tggaacatat tcgtaaaggc aaaggtgtaa aaagccctta tggggatcat ttatggcttg
    10081 atatttctat attgggtcgt gctcatgtgg aaaaaaatct tcgtgatgtg caagatattt
    10141 gtaaaacttt taatggtatt gatccagcag acgagggtcc aaaaggttgg gcaccagttc
    10201 ttccaatgca gcattattct atgggtggaa ttagaactaa accaacgggt gaaagtcaat
    10261 ggttaaacgg actttttgct tgtggggaag cagcttgctg ggatatgcac ggatttaatc
    10321 gtttaggtgg aaattcatgt gctgaaactg ttgtagcagg tatgatagtg ggagattatt
    10381 ttgcagatta ttgtaaaaat aatggtgaag taattgatac aaatgtagta aaagacttct
    10441 taactaaaga gtatcaatat ttaaaatctt tagtagataa agaaggtaaa cataatgttt
    10501 ttgaaatcaa aaacagaatg aaagaaatca tgtgggataa ggtggccatc tttagaacag
    10561 gtgaaggttt gaaagaagca gtagatgaac ttgaaaaact ttataaagat tctcaagacg
    10621 ttaaagtaca ttgtaaagaa cttgattgtg caaatccaga gcttgaagaa gcgtatagag
    10681 tgccaagaat gttaaaaata gcactttgcg tagcttatgg agcgctttta agaacagaaa
    10741 gtcgcggggc gcattatagg gaagattatc caaaaagaga tgatttaaat tggatgaaaa
    10801 gaaccaatac tttttgggta gaaggcgaaa ccttaccacg catagaatac gaagagcttg
    10861 atattatgaa aatggaaatt ccaccagcat tccgtggata tggagctaaa ggaaatatta
    10921 tagaaaatcc tttaagtgaa aaacgccaag ctgaagtgga tgctatccgt gaaaaaatgg
    10981 aagctgaagg caaaggtcgt tatgaaattc aaaacgcttt aatgccttat gaattgcaag
    11041 ctaaatataa agcaccaaac caaagaatag gagttgatta tgagtagaaa attgacaata
    11101 aaggcattta aatacaatcc tttaagcaaa atttctaaac cacattttgt gacttatgag
    11161 cttgaagaaa ctccttttat gacggttttt gtatgtttga ctttgatccg tgaaaaaatg
    11221 gatgcagatc tgagttttga ctttgtttgt cgtgcaggga tttgcggatc ttgtgcaatg
    11281 atgattaatg gagtgccaaa acttgcttgt aaaactttga ctaaagatta tcctgatgga
    11341 gtgatagagc ttatgcctat gcctgcattt aggcatatta aagatttaag cgtgaataca
    11401 ggcgagtggt ttgaagacat gtgtaagcgt gttgaaagct gggtgcataa tgaaaaagaa
    11461 actgatattt ctaaacttga agaacgcatt gagccagaag ttgcggatga aacttttgaa
    11521 cttgatcgtt gtatagagtg tggaatttgt gtagcttctt gtgcaactaa acttatgcgc
    11581 ccaaatttca tagctgctac agggctttta agaacagcta gatatttaca agatccgcat
    11641 gaccatagaa gtgtggaaga tttttatgaa ttagtaggcg atgatgatgg tgtttttggt
    11701 tgtatgtcgt tgcttgcttg tgaagataat tgccctaaag aattaccttt acaaagtaaa
    11761 atcgcttata tgagaagaca acttgtcgct caaagaaata aataaatctt tccccttttt
    11821 aaggggaaga ttatgaaaga attattccaa aaaatttggc aaaatgaact ccaattttta
    11881 aattttgatg ctaaatttca agataaaaac aaacttgata cagccgagtg tgcgattatt
    11941 ttaagtgtca ataaagacaa ttatgaaaga tattttctct taaaagaatt tcaagagctt
    12001 tgcaaaaaaa ttgatttaag agtggatatt tttagtatac aaaatgctca aatttgtatt
    12061 ttaaatcttt ttaaatcagg ttttattcca aagcaagatt tacttaaggc tctaaaaatt
    12121 ttagaaaaaa tttcaaaaaa tactgaaata tttgatttta tttcacaaga aaaagttcaa
    12181 agtatagatc aaaaagcttt atttcaaaat gattttaaag aattaaacac cattaattta
    12241 gagcttcaaa agctaagttt tgatgaaaat ttaaaatcaa gacttcaaaa aactttggaa
    12301 aaatttcaaa atttagagtt taatatagcc atcactggcg tgatgaatgc aggaaaatca
    12361 agccttttaa atgctctttt aaaagaagat tttttaggcg tttcaaacat acctgaaaca
    12421 gctaatttaa cagtattaag ctatggtaag agtgaagaag caaagatata tttttgggat
    12481 aaaaaagaat ggcaaaatat acttgaaagt tcgcacttta atgcagattt aaaagaattt
    12541 attgacaagc tggataagag tgtaaatata caggatttta tcaaagataa acctttaata
    12601 caaaatatcg cactttgcga gcttaaaaat ttcagttcag ctaaaaataa aatttcagct
    12661 ttaattaaaa aaatagaaat taaaagtcat ttagattttt taaaaaataa tatttccata
    12721 gttgatactc cagggcttga tgatgttgta gttcaaagag aaattgttac aaatgagtat
    12781 cttagagaaa gtgatttttt aattcattta atgaatgctt ctcaaagctt gactcaaaaa
    12841 gatgcagact ttttggtgca ttgtctttta aattcaaggc tgagtaagtt tttaattgtt
    12901 ttaactaaag cggatttgtt aagcaaaaag gatttagaag aagtcattgt ttataccaaa
    12961 gaaagcttaa aatcaagact tgtggattta gatgaaaatt tggtggaaaa gattgatttt
    13021 ttatgtgtga gtgctaaaat ggcaagtgat ttttataaga gtttagcgcc taaggaaagt
    13081 ttgcaaaaaa gtggtatgca agaatttgaa aactatcttt ttaacgagct ttacgcagga
    13141 gaaaaaagta agattgcctt aagagcttac aaaaaagaat tgcatttaga gcttaaaaat
    13201 attctaagcg aatatgaaat gcaaaatcgt cttattaagg agaataaaca aggtgtaagt
    13261 gaagaaaatc aaaagctttt acttgaactt caaaagcaaa acaccttatt aaaagaagca
    13321 caagatgaaa tttcaaattc cgttgcaaaa cttaaaaata tagatagtgg catagataat
    13381 cttgttttac ttttggttaa aaaattaaaa gaacgcttga tagatgagtt taaatatttg
    13441 aaaaataatg cacaaaagct taatctttct cgtattttaa atatagttga tattaccacg
    13501 aaagatggga ttaatgatat tttaagagaa attaaatttg aa
//
LOCUS       DAZAND010000046        13486 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.046, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000046 DAZAND010000000
VERSION     DAZAND010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13486
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.046"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..2303
                     /locus_tag="ACHDOB_000997"
     CDS             <1..2303
                     /locus_tag="ACHDOB_000997"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325923.1"
                     /translation="DFLENNTEEFENLKKDIQKYEEIKFNLDNYINEIKQNKDFVKEY
                     FDLNTKIKDEILSELNHALEIVDSLHLNVDELKEIKPELISIKKEVKDLANEAKLVVS
                     EASEIIKNKINTIFFENQRLNQEMIDSVKKLEEIKFDIGVKYKEIASAYELLLESKQN
                     IEELREVIALYKEFENDITSYSQIIKDFKSKIENLERDLKSQSESIYSSLNDKQNEIL
                     KNLNEVKNEALVKFDELTAKCEGYKIHFEQSYDRFNQRALIANEDLGRLAEVAKKELG
                     NDKLIYETELKVLAEETIKQMEEMLKGLSDERNEVTEVFETQKKEFTTLVDTSKVMID
                     NLNHIFNANYQAKKNEFSIIFNEKLHSLNENKQDFLNELVSAKENGLNKINETKEQSL
                     NEIIQTKEQGLNELETKKGECIDEIDNQARIYDISGVKANVEYLLSLLNEKDDGKDDG
                     IKDEIANIEQGIKDKEQELEEIKKQIEEALNNNDELKQKNEELKEIKNQIDEALSQEP
                     PADTSELEERKEELENQIAELEKEIAGELINKKEEIEKELEEANQNLEDKNNELEQNE
                     KDKKLITQKVLDITIKTLEALIDTKVSLNGDEEINGNKTFANPILVKVDPTNDNHLTN
                     KIYVDTALNTKANLNGDNIFNGTNTFNQALTSPTNPTNDNHLTRKWYVDYGGGIKNLG
                     TTGSINLDLRQAQHFILTANAGTSIGIANFGGVGKSGTITINNCQNVVAFNAPFNFRI
                     AQSGFSGTETFAYFCIASNNVRLVRT"
     gene            2305..2754
                     /locus_tag="ACHDOB_000998"
     CDS             2305..2754
                     /locus_tag="ACHDOB_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325924.1"
                     /translation="MNCLLLSNNGIALNLPPSLGGSVANYNYMLKLDMIYKQAVVLPS
                     NINNKEVVMLGEVWTTGNMSNKTSGNTLEITWNNFNSKVTLHALSKYYTANAKIKVEK
                     KFNFGNINNLQIMLSSWQSGSANASAGWNLNDGDRLNPRANLTLYWN"
     gene            2767..3402
                     /locus_tag="ACHDOB_000999"
     CDS             2767..3402
                     /locus_tag="ACHDOB_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HFN3325925.1"
                     /translation="MFYDLKNKSLKYDDIFLKDVKIQNEEGEIDAQDTYFLSACDDKL
                     LKELGFAKVKEEEIPSFNEKIEELRQIQTYDEENNLYIISYEIKEKALEELKELKLEE
                     LKAIKEEKLLFMPFKNTIFQIDTEAKINISGKVSEIMLANLNNTPLENIAWIDKDNKI
                     ITFNKEEFLEFGVGIAKYTESIIFKNDELRNKVKNATSLEELNLIAWESEK"
     gene            3399..3782
                     /locus_tag="ACHDOB_001000"
     CDS             3399..3782
                     /locus_tag="ACHDOB_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325926.1"
                     /translation="MSTENIIKEGAILGSLSGSALLGLMVFVLAGIAWHLYKTLHKEA
                     GERTKELISETKNTNVLIREQIAVSRASSDSLVKFIETHCSKTNDKLEAIETDLMRMD
                     ERLVKLTQIRNDELRSIFKKKENND"
     gene            3775..4149
                     /locus_tag="ACHDOB_001001"
     CDS             3775..4149
                     /locus_tag="ACHDOB_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HFN3325927.1"
                     /translation="MTKTELKRVCVKPYDKDRFEVIQDYEFILPNYKGIVPQGFKTDG
                     ASIPRIFWSIYPPFKSEYFSACVVHDYLCINAKSRDDYRLADLVLKEAMQALEINKFK
                     IFVFYCSCNLFHQIKCLIKGIR"
     gene            4146..5426
                     /locus_tag="ACHDOB_001002"
     CDS             4146..5426
                     /locus_tag="ACHDOB_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325928.1"
                     /translation="MSLEQVINTQNESLNQIISSLQELVLSYKNGNLSLEDVKKLINE
                     TIENISNDYIKESELKEKLEALLEELGINANINEESLKEVVLKVVLENQESLKGDKGD
                     PFTYEDFTEEQLENLKGQDGAKGADGKNAYELWLENEENTGKSQDEFLESLKAQTPTK
                     EEIKPIIEEMLEDMKLNLGINGIKVSNSIPTPKTKANVNDLIITYNENVKQLWLCVAS
                     DDKYTSWINLLGNENITAQELIIISFDTNLNSGQYGGCLSDLRFGFENSLASTTQIIK
                     GLNEGSFLITKDGMGLKSKNYTEVSVLSKPSKNQIEGNIKTSGIYNDPAWHNITNALK
                     KYDGNANECCLWASNIKNSVSIELFTNEIPMSLFYRQAGYYGNVNLSNIKMQKALRVQ
                     NEIIVERSFIGIKKEIDKTTYGDNAFLFEFEEEK"
     gene            5475..5936
                     /locus_tag="ACHDOB_001003"
     CDS             5475..5936
                     /locus_tag="ACHDOB_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5675 family protein"
                     /protein_id="HFN3325929.1"
                     /translation="MKVTINRRYTGKTCVIGKFNVLDDEEKILFECFSLEEDKEGLES
                     GKDLRISDGVYNLKRHSPSRFENTLRSITKKDDDTMINVYNDEVPASRAILIHWGNTD
                     KDTQGCILLGLTKDNNNESIGQSRQACKEFYDLMHGKNLEDIKLEITNELA"
     gene            5942..6361
                     /locus_tag="ACHDOB_001004"
     CDS             5942..6361
                     /locus_tag="ACHDOB_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325930.1"
                     /translation="MFSYILGDKKLYIALVLMTILAGYFYLRLDSTQAKLEKSQSDLA
                     LALKINENNQEKLKELNQIHNAELNALNEANKEKNQVQERVQYVKEYIYKSNENNITK
                     LFNDVVDRLWDANSTSSNQNRNSKSYNSARVINTKPP"
     gene            6279..6476
                     /locus_tag="ACHDOB_001005"
     CDS             6279..6476
                     /locus_tag="ACHDOB_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325931.1"
                     /translation="MQTQQVVTKIEIQKVTIPQELLTLSPLEKPIAKNELDILNAYSM
                     LFYKYKQCEIQISKIKELNNE"
     gene            6469..6960
                     /locus_tag="ACHDOB_001006"
     CDS             6469..6960
                     /locus_tag="ACHDOB_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325932.1"
                     /translation="MSNTNVDYNKRLEAFKEIYPQILEMSLAEKSPFGEFKKLLEQFG
                     NDNVIRNDQQFQSLAQALVSVGQTIVAQSQNTALSMILQGDENELNAEKALLLRAQTE
                     TEKAKPALIARQTSQIDDNLRIEAAKVTQSVQFGYCTGGLDIPQEIMKLVKEKIENIE
                     KSS"
     gene            6960..8684
                     /locus_tag="ACHDOB_001007"
     CDS             6960..8684
                     /locus_tag="ACHDOB_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325933.1"
                     /translation="MLIDEKRLMRNYTLKPAYPSNIGELDTQEVYKQWFTYAMIGVNK
                     YVELLHKQLVRKGRSQIQNINHPLFKNSYIVKKYNIKSSSTAPYNKENYNDLGLNQFF
                     VGQDPYKPYQGDPSSENGIYHDICEIRTNYNLGSMQYYYGFPNNLALLFEKEKAWKYN
                     GKRFFYIDEKINFKDILNKALENINYEMLINDIEVVIFSQTIQKNNEWIYPSIDDIKI
                     PEIKVENVEFKPTFGKPYKKLCIDVEKFYNDFKELNKNIFRIEKVEITYNVYEKAQKT
                     RESDPSKIYYTLTSKKISFFEVFNSIKENYKCKYATPLCFYNGFNLVCYEEPYVAYSY
                     LNNQSFGKKDTSVTPSVYPLYRKSSNLPYGRRDRWFALWDSFYYLYVYEKSSKGILSF
                     LAPIVTIILAVATWWIGGQGAWIGTLIGVSENVAAGITLGISLGLAVGSLTGNKLFSI
                     LNAVWGLVNFLGAWGANNWNLAADFTKNTAQAAQEMSTFESTLNIIGNLLSGASKIFD
                     VVQSITADTPDMINEQSDDSDNEGGNGSEAEELAKDAINPTLWYNFETADILNEKIEK
                     KEKPIFIF"
     gene            8801..8950
                     /locus_tag="ACHDOB_001008"
     CDS             8801..8950
                     /locus_tag="ACHDOB_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325934.1"
                     /translation="MIKIAFFITFVISFLTAQSPVNFKEDNNITKEQNIFKEQPPKRI
                     KIPTH"
     gene            8956..9657
                     /locus_tag="ACHDOB_001009"
     CDS             8956..9657
                     /locus_tag="ACHDOB_001009"
                     /EC_number="2.1.1.223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016430 - tRNA
                     (adenine-N6)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HFN3325935.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNQIQGDIFHDDFNQFQSIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLTKANSMLKPNGTLYFCYEALALDE
                     ICFILKDIKIKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            9647..10021
                     /locus_tag="ACHDOB_001010"
     CDS             9647..10021
                     /locus_tag="ACHDOB_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HFN3325936.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVEFEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLF"
     gene            9994..11271
                     /locus_tag="ACHDOB_001011"
     CDS             9994..11271
                     /locus_tag="ACHDOB_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFN3325937.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKQAELNNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFALALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCRQ
                     AWEILKQTLDDKEFANSDESKAHIKAIKACVKP"
     gene            11268..12044
                     /gene="trpC"
                     /locus_tag="ACHDOB_001012"
     CDS             11268..12044
                     /gene="trpC"
                     /locus_tag="ACHDOB_001012"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HFN3325938.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            12054..12539
                     /locus_tag="ACHDOB_001013"
     CDS             12054..12539
                     /locus_tag="ACHDOB_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HFN3325939.1"
                     /translation="MQYLYAPWRSEYFEKEKSICPFCDCANKIKSDEDLGVIFRAKHC
                     FGVMNRYPYSVGHFMVIPYVHEEHIENLSDEIWQEMSHFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAPHCHYHLVPRWAGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            12529..>13486
                     /gene="mnmH"
                     /locus_tag="ACHDOB_001014"
     CDS             12529..>13486
                     /gene="mnmH"
                     /locus_tag="ACHDOB_001014"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HFN3325940.1"
                     /translation="MLSEVEFAEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKARGASYICQNTAKHILKITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFTLCGNTGCGKTELLEQLPQ
                     AINLEKIANHLGSSFGDILGKQPTQKAFEAELFHNMQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVKRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQRLITMLLEYYDKTYKKPDKIDLELNTDDILKAK"
BASE COUNT         5475 a         1491 c         2333 g         4187 t
ORIGIN      
        1 aagatttttt agaaaataat acagaagagt ttgagaattt aaaaaaagat atacagaaat
       61 atgaagaaat aaaatttaat ttagataatt atattaatga aattaaacaa aataaagatt
      121 ttgtaaaaga atattttgat ttgaacacaa aaattaaaga tgaaatttta agtgaactta
      181 atcatgcttt agaaattgta gatagcttac atttaaatgt tgatgaatta aaagaaataa
      241 aacctgaatt aataagtatt aaaaaagaag taaaagattt agcaaatgaa gcaaaattag
      301 tagtaagtga agcaagcgaa attataaaaa ataaaattaa cactatattc tttgaaaacc
      361 aaagattaaa tcaagaaatg atagatagtg ttaaaaagct agaagaaatt aaatttgata
      421 ttggagttaa atataaagaa atagctagtg catatgaact acttttagaa agcaagcaaa
      481 atatagaaga attaagagaa gttatagctt tatataaaga atttgaaaat gatataacat
      541 cttattccca aattataaaa gattttaaaa gtaaaataga aaatttagaa cgagatttaa
      601 aatcacagtc tgaaagtatc tactcttctt taaatgataa acaaaatgaa atattaaaaa
      661 atttaaatga agtaaaaaat gaagctttag ttaaatttga tgaacttaca gcaaaatgtg
      721 aagggtataa aatacatttt gagcaaagtt atgataggtt taatcaaaga gctttgatag
      781 ctaatgaaga tttaggtagg ttagctgaag ttgctaaaaa agaactaggt aatgataagt
      841 taatttatga aacagaatta aaagttttag ctgaagaaac aataaaacaa atggaagaaa
      901 tgctcaaagg tttaagtgat gaaagaaatg aagtcacaga ggtttttgaa actcaaaaga
      961 aagaatttac tactcttgta gatacttcta aagttatgat tgacaactta aatcatattt
     1021 ttaatgcgaa ttatcaagca aagaaaaatg agtttagtat tatttttaat gaaaaattgc
     1081 atagtttaaa cgagaataag caagattttt taaatgagct tgtgagcgca aaagaaaacg
     1141 gactcaataa aataaatgaa acaaaagagc aaagccttaa tgaaataatc caaacaaaag
     1201 aacaaggact taatgagctt gaaactaaaa aaggtgagtg catagatgag attgacaatc
     1261 aagcaagaat ctatgatata agtggtgtta aggctaatgt tgaatatctt ctttctttgc
     1321 ttaatgagaa agatgatggt aaagatgatg gaattaaaga tgaaattgca aatatagagc
     1381 aaggtataaa agataaagaa caagagcttg aagagataaa aaagcaaatt gaagaagctt
     1441 taaataataa tgatgaatta aagcaaaaaa atgaggaatt aaaggaaatt aaaaatcaaa
     1501 tcgatgaggc tttaagtcaa gaaccacctg ctgatacaag cgaacttgaa gagagaaaag
     1561 aagaacttga aaatcaaatt gctgagcttg aaaaagagat tgctggtgaa ttaattaaca
     1621 aaaaagagga aattgaaaaa gaacttgaag aagctaatca aaacttagaa gacaaaaaca
     1681 atgagttaga gcaaaatgaa aaagataaaa agctaattac acaaaaagta ttagatataa
     1741 ctattaaaac tttagaagca cttatagata caaaagtaag tttaaatggt gatgaagaga
     1801 taaatggaaa taaaactttt gctaatccta ttttagtaaa agtagatcca actaatgata
     1861 accatttaac aaataaaatc tatgtagata ccgctttaaa tacaaaagca aatttaaatg
     1921 gagataatat atttaatggc acaaatactt ttaatcaggc attaacttct ccaaccaatc
     1981 caacaaatga taatcactta actagaaaat ggtatgtaga ttatggtggt ggaattaaaa
     2041 atcttggcac aactggcagt ataaatctag atttaagaca agctcaacat tttattttaa
     2101 cagcaaatgc aggaacaagc ataggaatag ctaattttgg aggagtagga aaaagcggaa
     2161 caataactat aaataattgt caaaatgtag tagcttttaa tgcccctttt aattttagaa
     2221 tagctcaaag tggatttagt ggcactgaaa cttttgctta tttttgcata gcttcgaata
     2281 atgtaagatt agtaaggact taaaatgaac tgcctccttc tttctaataa tggcatagca
     2341 ctaaatttac ctccatcttt aggaggctcg gttgcaaatt ataattatat gttaaagcta
     2401 gacatgattt ataaacaagc agtggtattg ccatcaaata ttaataataa agaagtggtt
     2461 atgttaggcg aagtttggac gactggaaat atgtctaata aaacttctgg aaatacttta
     2521 gaaataactt ggaataattt taattcaaaa gtaacactac atgctttaag taaatattac
     2581 actgccaatg caaaaatcaa agtagagaaa aaattcaatt ttggaaatat aaataactta
     2641 caaataatgc taagttcttg gcaaagcggt agtgcaaatg caagtgctgg ttggaactta
     2701 aatgatgggg atagattaaa cccaagagca aatttaacat tatactggaa ttaagaaagg
     2761 gtaaatatgt tttatgattt aaaaaataaa agtttaaaat atgatgatat ttttttaaaa
     2821 gatgtaaaaa tacaaaacga agaaggtgaa attgatgcac aagatactta ttttttaagt
     2881 gcttgcgatg ataagctttt aaaagagctt ggttttgcta aagttaaaga agaagaaatc
     2941 ccaagtttta atgaaaaaat tgaagaactt cgccaaattc aaacttatga tgaagaaaat
     3001 aatctttata ttatttctta tgagattaaa gaaaaagcat tagaagagtt aaaagaatta
     3061 aaattagaag aactaaaagc tataaaagaa gaaaagcttt tgtttatgcc ttttaaaaat
     3121 actatatttc aaattgacac ggaagcaaaa attaatatta gcggaaaagt tagcgagata
     3181 atgttagcaa atctcaataa tactcctttg gaaaatattg cttggattga taaagataat
     3241 aaaatcatta catttaacaa agaagaattt ttagaatttg gggttggtat cgctaaatat
     3301 actgaaagta ttatttttaa aaatgatgaa ctaagaaata aagtgaaaaa tgccacatct
     3361 ttagaagaat taaatttaat tgcatgggag agtgaaaaat gagtactgaa aatataataa
     3421 aagaaggtgc tatactcggt tctttaagtg gatctgcatt attaggattg atggtttttg
     3481 tcttagctgg gattgcatgg catttatata aaactttaca taaagaagct ggggaaagaa
     3541 caaaagaact tataagtgaa accaaaaata ctaatgttct tattagagaa caaattgcag
     3601 tatccagagc aagtagcgat agtttggtta aatttataga aacacattgc tcaaaaacca
     3661 atgacaagct agaagctata gaaacagatc ttatgagaat ggatgaaagg cttgttaagc
     3721 ttactcaaat aagaaatgat gaattaagaa gtatttttaa aaaaaaggaa aacaatgact
     3781 aaaacagaat taaaaagggt ttgtgtaaag ccatacgata aggacaggtt tgaagtgata
     3841 caagattatg agtttatttt accaaattac aaaggcattg taccacaagg ttttaaaact
     3901 gatggagcga gtattccacg tattttttgg agtatttatc caccttttaa aagtgagtat
     3961 tttagcgctt gtgttgtcca tgactatttg tgtataaatg caaaatcaag agatgattat
     4021 aggctagctg atcttgtttt aaaagaagca atgcaagctt tagaaataaa taaatttaag
     4081 atttttgttt tttattgctc ttgtaattta tttcatcaga tcaaatgttt aataaagggg
     4141 ataagatgag tttagaacag gttataaata ctcaaaatga aagtttaaat caaattataa
     4201 gtagtttaca agaattagtt ttaagttata aaaatggtaa tttgagttta gaagatgtta
     4261 aaaaattaat taacgaaact attgaaaata tatcaaatga ttatataaaa gaaagcgagc
     4321 taaaagaaaa actagaagcc ttgctagaag agcttggcat caatgcaaat atcaatgaag
     4381 agagtttaaa agaagttgta ttaaaagttg ttttagaaaa tcaagaaagt ttaaaaggtg
     4441 ataaaggaga tccttttact tatgaagatt ttacagaaga acagcttgaa aatttaaaag
     4501 ggcaagatgg agctaaagga gctgatggta aaaatgctta tgaactttgg cttgaaaatg
     4561 aagaaaacac gggaaaaagt caagatgaat ttttagaaag tttaaaggct caaacaccaa
     4621 caaaagaaga aattaaacct attatagaag agatgctcga agatatgaaa ttaaatttag
     4681 gcattaatgg aataaaagta tctaattcta ttcccactcc aaaaacaaaa gctaatgtta
     4741 atgatttaat tataacttat aatgaaaatg taaaacaact ttggctttgt gtggcaagtg
     4801 atgataaata cacaagttgg attaatttgc ttggaaatga aaatattaca gcacaagagt
     4861 tgattattat tagttttgat acaaatttaa atagtggtca atatggcgga tgtttaagtg
     4921 atttgcgttt tggttttgaa aattctttag caagcactac gcaaattata aaaggactta
     4981 atgaaggcag ttttttaatc actaaagatg gaatgggttt aaaatctaaa aattatactg
     5041 aagttagcgt tctttcaaaa ccaagtaaaa atcaaataga aggaaatatc aaaacgagcg
     5101 gaatttataa tgatcctgct tggcataata ttaccaatgc tttaaaaaaa tatgatggca
     5161 atgcaaatga atgctgtctt tgggcttcta atataaaaaa tagtgtaagt atagagcttt
     5221 ttacaaatga aattcctatg agtctttttt ataggcaagc tggatattat ggaaatgtca
     5281 atctttcaaa tataaaaatg caaaaagccc ttagagttca aaatgaaatt atagtcgaga
     5341 gaagctttat aggaataaaa aaagaaattg ataaaactac ctatggtgat aatgcttttt
     5401 tatttgaatt tgaagaagaa aaatgagttt aaatctaaaa ataaaataca aaaaataaaa
     5461 agaaaggaat tataatgaaa gtaacaatta atagaagata cacaggtaaa acttgtgtta
     5521 ttggcaaatt taatgtttta gatgatgaag aaaaaattct ttttgaatgc ttttctttag
     5581 aggaagataa agagggttta gaaagtggta aagatttaag aatatcagat ggtgtttata
     5641 atttaaaaag acatagtcct tcaagatttg aaaatacttt aagaagtatt acaaaaaaag
     5701 atgatgatac aatgataaat gtttataatg atgaagttcc agcaagtcgt gcaattttaa
     5761 tacactgggg aaacactgac aaagacacac aaggttgtat cttactgggg cttaccaaag
     5821 ataacaataa tgaaagcata ggacaaagca gacaagcttg taaagaattt tatgatttga
     5881 tgcatggtaa aaatcttgaa gatattaaat tagaaataac aaatgaatta gcatgagttc
     5941 tatattttca tatatcctag gagataaaaa actttacatt gctttagtac ttatgacaat
     6001 tttagcagga tatttttatc taagacttga tagcactcaa gcaaaattag aaaaaagtca
     6061 aagtgattta gctttggctt taaaaataaa tgaaaataat caagaaaaat taaaagaatt
     6121 aaatcaaatt cataatgctg aattaaatgc tttaaatgaa gcaaataagg aaaaaaatca
     6181 agtacaagaa agggtgcaat atgttaaaga atacatttat aaaagcaatg aaaataatat
     6241 taccaagctt tttaacgatg tcgttgatag gttgtgggat gcaaactcaa caagtagtaa
     6301 ccaaaataga aattcaaaaa gttacaattc cgcaagagtt attaacacta agcccccttg
     6361 aaaagccaat agcaaaaaat gaactagata ttttaaatgc ttattctatg cttttttaca
     6421 aatacaaaca gtgtgaaatt cagataagca aaataaagga gctaaataat gagtaataca
     6481 aatgttgatt acaacaaaag acttgaagca tttaaagaaa tttatccgca aattttagaa
     6541 atgagtttag cggaaaaatc tccatttgga gaatttaaaa agcttttaga acaatttgga
     6601 aacgataatg ttataagaaa tgaccaacaa tttcaaagct tggcacaagc gttggtaagt
     6661 gttggacaaa ccatagtggc tcaaagtcaa aatacagctt tatccatgat tttacaaggc
     6721 gatgaaaacg agcttaatgc tgaaaaagct ttacttttaa gagctcaaac agaaacagaa
     6781 aaagcaaaac ctgcattaat agctagacaa acttcacaga tagatgataa tttaagaata
     6841 gaagctgcaa aagttacaca gagtgttcaa tttggatatt gtaccggtgg tcttgatata
     6901 ccacaagaaa ttatgaagct tgttaaagaa aagatagaaa atatagaaaa gtcttcataa
     6961 tgcttataga tgaaaaaagg cttatgagaa attatactct taagcctgct tatccatcaa
     7021 acataggaga attggataca caagaagtat ataaacaatg gtttacctat gctatgatag
     7081 gggtaaataa atatgttgag cttttacata aacaacttgt aagaaaaggt agaagtcaaa
     7141 ttcaaaatat aaaccatccg ctatttaaaa attcgtatat agtgaaaaaa tataacatta
     7201 aaagttctag cactgcacct tataataagg aaaactataa tgatttagga cttaaccaat
     7261 ttttcgtagg gcaagatcca tacaaacctt atcagggaga tcctagtagt gaaaatggaa
     7321 tatatcatga tatttgcgaa ataagaacta attataattt aggaagtatg cagtattatt
     7381 atggttttcc aaataattta gctcttttat ttgaaaaaga aaaagcttgg aaatataatg
     7441 gaaaaagatt tttttatatt gatgaaaaaa taaatttcaa agatatatta aataaggcat
     7501 tggaaaatat aaattatgaa atgcttataa atgatataga agtagttatt ttttctcaaa
     7561 ccatccaaaa aaataatgaa tggatatatc ctagtattga tgatattaaa ataccagaaa
     7621 ttaaagtaga aaatgttgaa tttaaaccaa cttttggaaa accttataaa aaattatgca
     7681 ttgatgttga aaaattttat aatgatttta aagaattaaa taaaaatata tttagaatcg
     7741 aaaaagtaga aataacctat aatgtatatg agaaagcaca aaaaaccaga gagagtgatc
     7801 cgagtaaaat atattatact ttaacaagca aaaagatatc tttttttgaa gtatttaact
     7861 caataaaaga aaattataaa tgcaaatatg caactccttt atgtttttat aatggtttta
     7921 atttagtttg ttatgaagag ccttatgttg cttattctta cctcaataat caaagctttg
     7981 gaaaaaaaga tacaagtgtt acgccaagcg tatatccgct atatagaaaa agttcaaatt
     8041 tgccttatgg gcgtagagat agatggtttg cattatggga tagtttttat tatctttatg
     8101 tatacgaaaa atcaagcaaa ggaattttaa gctttttggc acctattgtt actattattt
     8161 tggctgtagc tacttggtgg attggcggac aaggtgcatg gataggaaca ttgataggag
     8221 tgagtgagaa tgtagctgcg ggtatcacac taggaattag cttaggttta gccgtgggtt
     8281 cacttactgg aaataaatta ttttcaattc ttaatgctgt ttggggtttg gttaattttt
     8341 taggtgcttg gggtgctaat aattggaatt tagctgcaga ttttacaaaa aatacagcac
     8401 aagcagcaca agaaatgtca acttttgaat caactttaaa tattattgga aatttactaa
     8461 gtggagctag taagattttt gatgttgttc aaagcattac agcagatact cctgatatga
     8521 taaatgagca aagcgatgat tctgataatg aaggtggaaa tggaagtgaa gctgaagaat
     8581 tagcaaaaga tgcaattaat ccaactttat ggtataattt tgaaactgca gatatattaa
     8641 atgaaaaaat agaaaagaaa gaaaaaccta tttttatatt ttaatttttg tagccatttt
     8701 gtagccaaat taaatttgaa atatttaaaa tttatatttt atggtatttt atagttattg
     8761 ttaggtgttc gccgtggaca ccattttatg aggtgttatt atgataaaaa ttgctttttt
     8821 tataactttt gtaatttctt ttttgacagc acaaagccca gtaaatttta aagaagataa
     8881 taatataaca aaagaacaaa atatatttaa agaacaacct ccaaaacgca ttaaaattcc
     8941 aacgcattaa aatatatgtc agatttgatt acgctagcac aattatcaca agggtatcgt
     9001 tataatagtg attctttaat tttagctgat tttattttaa aacaaggaat taaaggcgct
     9061 gtttttgatg taggtgcggg ctgtggtatc ataggtattt tacttaaaaa aaatattgca
     9121 aatttaagtt tatctttgat tgatattcaa aaagaaaata taaaattgat tgaaaaaaat
     9181 ttaaaatcca accaaataca aggcgatatt tttcatgatg atttcaatca atttcaaagc
     9241 ataaaaaaat ttgacttcat agtttgcaat cctccatttt atagacaagg agcttacaag
     9301 agtgaagatc agcataaagc tataagtaaa tttcaggaat ttttaccctt gcatagcttt
     9361 ttaactaaag caaattctat gcttaagcca aatggtactt tgtatttttg ctatgaagct
     9421 ttagctttag atgaaatttg ttttatttta aaagatataa aaataaaaat aacaaagctt
     9481 tgctttgtac atacacatca aaacaaaaaa gcaagacttg ttttgataca ggtaaaaaaa
     9541 ggttcaaaat cgccttgtga gattttacct cctttttttg tatatgaaaa tgaaatttta
     9601 agcaaacaaa tgcaagaaat tcacttaaga tttaggttaa aaagttatga tatttgataa
     9661 aaatttttct tatgcttttg atgaaaatgc ttgtgagaaa tgcggtggaa agtgttgcac
     9721 tggagaaagt ggcaatattt ttgcaagcaa agaagaatta gaagcattaa gaaagcattt
     9781 aaatttagaa agcaaagaat ttgctgaaaa atacttgaga aaagtgggct ttaaaatgag
     9841 ttttaaggaa gtcgaatttg aagatggctt tgcttgcatt ttttttgata ctcaaaaaag
     9901 aaattgcagt atctacgatt ttcgtccaaa acaatgcaga acttttccat tttgggaata
     9961 ttttaaaaca catcaaaagg aattagaaaa agaatgtata ggtatttgtt atttgtttta
    10021 gcagcctttt ttttggcagc ttgtggaagt tcaaaaatca atgttgttta tcctgattat
    10081 acaaaatata aaagcaatga ttttgattta agggttatga aggcttataa ttatgagtat
    10141 tataaacaat acaaagaagc cagagatgaa tttttaagtc tttatcaaga ttataataat
    10201 actaattttt tagaaaatgc atttttactt actttagcaa acaatcttga caagcaagca
    10261 gagttaaata atctagcaaa gccttattta aatcaaaatg acaatcttaa gcgacttagt
    10321 gctctttatg ctttaaattc aaatgatatc aacaatgctc aaaaacttat gaaagagctt
    10381 ttaacaaaaa aggatagtga tcctagaaat ttagagcttt acggggatat tttggttaaa
    10441 aaaaatgatt taaaaaatgc tacaaaatac tatagatctg cttataatca agtgcaaaat
    10501 gaagaaattt tatttaaact cataggaatt tatgcgattt taaatgatac tttaaatatt
    10561 aaaaatgttt tagaattttc aagaaaaacc aatggttgca ctctcaaaac ttgcgtcttg
    10621 cttgctaaaa tttattttga tgaaaaaaat atcgaagctt taaaaagtat atataaagag
    10681 ctttatcaac ttaccaaaaa taaaagtttt gcattggctt tggttgagct tttaaattct
    10741 caaggcaaaa cagaagaagc tttaaaaatt tctttgcagt atgatttaga tgatgatatt
    10801 aaactcgctt tgtatcagaa tttaaaacgc tttgatgatg ctaaaaaaat gagtttagct
    10861 ctttatcata aaacaaaaaa taaagaatat cttctacgag cggcagtttt tgaatttgaa
    10921 gctgcaaatg aagctaaaaa aatcactccg aaagtaattg attctgtaaa agaaaaattc
    10981 gaacaagcta tcgataaaga tagcaatgct ttgtatttaa actactatgg atatttgctt
    11041 atagattatg atttagatgt taaaaaaggt atagagcttg tgaaacttgc cttagaaaaa
    11101 gatccgcaga atttgtatta tttagattct ttagcttggg ggtattataa actaggcgat
    11161 tgtaggcaag catgggaaat tttaaaacaa acattagatg ataaagaatt tgcaaattct
    11221 gatgagagta aagctcatat aaaagcgata aaggcgtgtg taaaaccatg atattggata
    11281 aaatttttga aaaaacaaaa gaagatttaa aagaacgcaa actaaaactt ccttatgata
    11341 tgttagggcg ttctttagct tcaaatcctt tctttccaaa agatgtgatt aaagctttaa
    11401 aaagagtaga aaaagaagtt aaaatcatag cagaagtaaa aaaagcaagc cctagcaagg
    11461 gagtcattag agaagacttt gatcctttga gtattgcttt aaattatgag aagaacaaag
    11521 ctgcggcgat ttctgttttg actgagccac atttttttaa aggttcttta gaatacttaa
    11581 gtcttatacg ccgttataca caaattcctt tacttagaaa agattttatc tttgatgagt
    11641 atcaaatttt agaagctttg gtttatgggg cagactttgt attgttaatc gctaaaatgc
    11701 taagcatgaa agagcttaaa aaactgcttg agtttgcaag acatttaggt cttgaggctt
    11761 tggttgaaat tcatgataaa gaggatttga gtaaggctat ttttgctgga gcggatatta
    11821 tcggtatcaa tcatcgtaat ttagaggatt ttactatgga tatgagtttg tgcgaaaaac
    11881 ttatcccaca aatcccaaat tcaaaaatca tcatcgcaga aagtggttta gaaaataaag
    11941 aatttttaga gcatttgcaa aatttaggcg ttgatgcttt tttaatcggc gaatatttta
    12001 tgcgcgaaaa agatgaagga aaggctttaa aagctttgct ttaaggaggg aaaatgcagt
    12061 atttgtatgc accatggcgg agtgagtatt ttgaaaaaga aaaaagcatt tgtccatttt
    12121 gtgattgtgc taataagatc aaaagcgatg aagatttagg cgtaattttt agagcaaagc
    12181 attgttttgg agtgatgaac cgctatcctt attctgtggg gcattttatg gtgattcctt
    12241 atgtacatga agagcatata gaaaatttaa gcgatgaaat ttggcaagaa atgagccatt
    12301 ttgtgcgttt gggagtgaaa attttaaaag agcaaattca tgcaaatggg gtcaatatcg
    12361 gtatgaattt aagcaaagat gcaggagctg gcatagcacc tcattgtcat tatcatctag
    12421 tgccacgctg ggcaggagat acaaatttta tcacaaccat aggagaaact agggtttgtg
    12481 gtactaatat cgagcaagtt tatcaaaaac ttgttttggc ttttaaaaat gctcagtgaa
    12541 gttgaatttg cagagtttca aaaagaaaat ttctctcttt taatcgatgc aagaagccct
    12601 agagaatttt tgcattctca tttgatagga gctttaaatt tttatgcact caatgatgaa
    12661 gaatatcaag aaataggaac gatttataag aaaaatcaag ctttagccaa ggctaggggt
    12721 gcgagttata tttgtcaaaa taccgctaag catatattaa aaatcaccca aaattttcgc
    12781 ataggagaaa aggtggggat ttattgttct cgtgggggtt tgcgttcaaa gtctatcgca
    12841 gtgattttaa gtgagcttgg ctttagagtg gtgcgtttaa aaggtggctt taaagcttat
    12901 agaacttttg taacgcatta ttttgaaaat gaaataaatt ttgatttttt tactctttgc
    12961 ggcaatacag gctgtggaaa aacagagctt ttagaacaac tcccacaagc tataaatttg
    13021 gaaaaaatag caaatcattt aggctcgtct tttggtgata ttttaggaaa acaacctacg
    13081 caaaaagctt ttgaagcaga actttttcac aatatgcaaa atttagaaaa ttttgctttc
    13141 atagaaagtg aaagtcgcaa aataggggat atcatcttac ctttgaaatt ttatgaaaaa
    13201 atgcaaaagg cttttaaaat ttattgtttt tgttctttgg aaaatcgcgt taaaagaata
    13261 caaaaaattt atcaagagaa aatgactcct ttaaaatttc aacaatgtgt gcaaaaaatc
    13321 agcccttata tcagcttaaa tttacgccaa gatttgcttc aaagttatga gagaaaagaa
    13381 tggcaaaggc ttattactat gcttttggag tattatgata aaacttataa aaaaccagat
    13441 aagattgatc ttgagttaaa tactgatgat attttaaaag ctaaag
//
LOCUS       DAZAND010000047        13325 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.047, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000047 DAZAND010000000
VERSION     DAZAND010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13325
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.047"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..456)
                     /locus_tag="ACHDOB_001015"
     CDS             complement(<1..456)
                     /locus_tag="ACHDOB_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HFN3325941.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVDIDAQILQKPFLPTDFLNLLNNKDTNKHT
                     SIDLPILSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDD"
     gene            complement(513..1280)
                     /gene="fliR"
                     /locus_tag="ACHDOB_001016"
     CDS             complement(513..1280)
                     /gene="fliR"
                     /locus_tag="ACHDOB_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HFN3325942.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(1267..1902)
                     /locus_tag="ACHDOB_001017"
     CDS             complement(1267..1902)
                     /locus_tag="ACHDOB_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3325943.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLALNTKDCIAIQGSSGCGKSTL
                     LHIFSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQNLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDNKLASFCDKTYTINANGIC"
     gene            complement(1915..2988)
                     /gene="tsf"
                     /locus_tag="ACHDOB_001018"
     CDS             complement(1915..2988)
                     /gene="tsf"
                     /locus_tag="ACHDOB_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HFN3325944.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSIINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(2988..3779)
                     /gene="rpsB"
                     /locus_tag="ACHDOB_001019"
     CDS             complement(2988..3779)
                     /gene="rpsB"
                     /locus_tag="ACHDOB_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HFN3325945.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTMLFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(3895..5058)
                     /locus_tag="ACHDOB_001020"
     CDS             complement(3895..5058)
                     /locus_tag="ACHDOB_001020"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFN3325946.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQSAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNKVLDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(5184..6308)
                     /locus_tag="ACHDOB_001021"
     CDS             complement(5184..6308)
                     /locus_tag="ACHDOB_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFN3325947.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFSVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGITANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKVALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(6305..7555)
                     /locus_tag="ACHDOB_001022"
     CDS             complement(6305..7555)
                     /locus_tag="ACHDOB_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HFN3325948.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFITGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(7557..8060)
                     /gene="petA"
                     /locus_tag="ACHDOB_001023"
     CDS             complement(7557..8060)
                     /gene="petA"
                     /locus_tag="ACHDOB_001023"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HFN3325949.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(8150..9436)
                     /locus_tag="ACHDOB_001024"
     CDS             complement(8150..9436)
                     /locus_tag="ACHDOB_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HFN3325950.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     AYFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILHFSREKNQEKIYISTKKLM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVMVFVLYVRVLPKRLEF
                     KLVKKEQISSKLFFLCIVFLFLFVISFFIGEIFDIKISFFALLWAGIFWLIVLKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYTFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            complement(9437..11296)
                     /gene="mnmG"
                     /locus_tag="ACHDOB_001025"
     CDS             complement(9437..11296)
                     /gene="mnmG"
                     /locus_tag="ACHDOB_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HFN3325951.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSKNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQIQMLRSVKGFEDAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPMFETMDNYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            complement(11382..11879)
                     /gene="cetB"
                     /locus_tag="ACHDOB_001026"
     CDS             complement(11382..11879)
                     /gene="cetB"
                     /locus_tag="ACHDOB_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HFN3325952.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDINNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRVEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            complement(11897..13276)
                     /gene="cetA"
                     /locus_tag="ACHDOB_001027"
     CDS             complement(11897..13276)
                     /gene="cetA"
                     /locus_tag="ACHDOB_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HFN3325953.1"
                     /translation="MVKNGLLLTIFLSIIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
BASE COUNT         4665 a         2516 c         1622 g         4522 t
ORIGIN      
        1 atcatcatca aaactcaaat cttccattcc ctctgaattt atatctaaag aattttcatc
       61 aggcaaatca tctaaattta aattatctaa atccaagctt atatcagcat aaggattttc
      121 atcattactt aatattggca aatcaataga tgtatgtttg tttgtatctt tattattaag
      181 taaatttaaa aaatctgtag gtaaaaaagg tttttgtaaa atttgtgcat ctatatctac
      241 attttgattt cgcggggcta aaaaaatcaa tctatcacat ttttctttaa gaatttttaa
      301 aggtgctgga gtatcactat ctacgacaat cacatcataa ttacccaaat tttcactata
      361 agcattaagt tcttcaaaat cataagacat ttttttagca ctaaggctta caagtcttga
      421 aactacaggg ttttcattta aaagtaaaat tttcatcact ttaatccttg aaaaataatc
      481 actattttac gataatttca tttatccttt ccttaggaga aaaaaagagt ttgcatatga
      541 gtgaaaagtt ctaaaattaa atttttaaaa tattgcatca taactaataa aatagcgatc
      601 aaaactacaa agcctaaagc tatctttata ggatagccaa taactaaaag attaaattgt
      661 ggcattgttt tcatcaaaag tccaaaaata acatcagcta aaagtgaaat tccaagtata
      721 ggaaagctca tagtaaaacc tatgatgaaa atattaaaca tacccatatt tagataatgc
      781 attaaattct catgcggata aaagccacct aaactgatat aacctaaaga atgacttaaa
      841 aacaaaagca ttaaatgatg accatcaaaa gcaagaaaaa acatcaaagc aagcaaattt
      901 aaaatttgag atgtgatagg catactcgtt ccagaacttg gatctaatat acttgccata
      961 gtaaatccca tagtaaaagc aatctgctca cctgccatca taataatagc aaaaataatt
     1021 tgaagcatta atcctgctat cattccaaaa atcacttcac taataagctg taaaacaaaa
     1081 aaactatcta aatgcaaaga ttctaatcta gccaaaggat ataaatacat agtcaaaaat
     1141 aaaactatag tactttttat caccatagga atagaattat gtgaaaaaaa aggaaaaaaa
     1201 actataagac cactcattct agcaagaagc aacataaaag ttacaacatt tttatcacct
     1261 aaataattaa caaattccat tggcgtttat agtataagtt ttatcacaaa aacttgcaag
     1321 cttgttatcg tgagttacaa aaaataaagc tgcatcattt tctttaacat aggatattaa
     1381 aagctcgata acatttttag cattatcaaa atccaaattt ccagttgctt catcagcaaa
     1441 aataatcttt ggttttttac aaagcacgcg cgcgatactc acacgctgtt gttgtccgcc
     1501 gctaagcttt cctatttttt gatgtaaaag cgtatcaata cctaatcttt ttaaaatttt
     1561 ctcatctaaa ttttgacccg ataaaacact agcaagttcg atattttcta aagctgaaaa
     1621 acctttaaaa agataatgtg tctgaaaaat aataccaaaa tcataacggc gaatttttaa
     1681 tctttcgttt tcatctatct gataaagact agaaccttta aaaaaaactt cacctttttt
     1741 tggaattaat aaggaagaaa atatatgcaa aagagtagat ttgccacaac cgctactccc
     1801 ttgaatagca atgcaatctt tagtatttaa agcaagattt aaaccctcaa aaagcggata
     1861 atcaaaacta tggcttaaat tttccgctct taagagttcc atttttaacc gtttttaaag
     1921 ttgtgcagca acttcagccg caaaatcttc agttttcttt tctaaacctt cgccaacttc
     1981 aaagcaaata aattcgacaa ttttaatttt tccgccaaat tctttttctt tttcagcgat
     2041 cacttgttct acggtttttt tatcatccat tacataaaac tgacccatta aagtaagttt
     2101 gctatcaagt tgagaattat ctgctataaa gctattcatt ttacctggga taatattatc
     2161 ccaaattttt tcaggtttac cttgagcttt aagctcttct ttgatttttt cttcagcttc
     2221 ttttaaaatt gcatcgctta attgtttgcg acttgcaaat tgaggaattt tatgttcagg
     2281 tttatttgga tctttaagtc tgcgtctttc ttcattttct ttttcaagtt cagcaaccaa
     2341 agctttgtat tcattttcaa caaaagtcat atccaaatct tcataactta aataacttgg
     2401 tctcattgct gcaatatgca tacaaatttg tcttaacaaa tctcttgatt ttgaagccac
     2461 ttcagcgcta tcacaagctg cagcgatcac aacaccaaca cggccatttg tatggatata
     2521 accatttaca acaccgttag cacctgcttt taaagttgca aatcttctta caactaagtt
     2581 ttctcctata gttgcaattt gactttttaa atattcttca aattttacgc cattgattat
     2641 gcttgaatga agttcttcca cactttgtaa gctattactt tgaatatggg ctgtggtatc
     2701 ttttgttaaa gcgataaact gatcattttt tgccacaaaa tctgtttcgg aattaatctc
     2761 acttacagtt gcacttgtaa aatcatcact tacttttaca cttactaaac cttctgcagc
     2821 aagtctatct gcttttttag cagccttacc taaacctttt tctcttaaaa gttgtactgc
     2881 tttatcaaaa tctccattag tttcactcaa agcattttta caatccatca tccccgcgcc
     2941 tgtactttcg cggagttctt ttaccattgc agcagtaatt tcagccatta ttcttgctcc
     3001 tcaccgaagt cttcttcgct catcgcttca tctaaaactt cttttttctc ttcatcggtg
     3061 atttcttttt cttcatttgc taaagcttcg ccatcttgtt ctcttaaagc ttttccttca
     3121 ttaatcgctt cagccatttc ttggcagaaa agttgcactg aacggattgc atcatcattt
     3181 cctggaatag gataagttac caagtcagga tcgcagtttg tatctagtgg agctacaaca
     3241 ggaattctta atctatttgc ttcttgaaca gcaatttttt cttttactgt gtcaataaca
     3301 aaaatcatat caggttgagt tttcatataa cgaattccac ctaaataagc taataatttt
     3361 tctttttttc ttgtaagcat taaagcttct tttttagtta aaagtttaat acttccatct
     3421 tcttccattt tttcaattac ttctaatttt ctaattgatt ggcgaatggt accaaaattt
     3481 gtcatcatac cgccaagcca tctatgattt acataaggca taccgcattt ttcagcgtat
     3541 tctttaatcg ctccacctgc ttgttttttt gtcccaacaa aaagcatagt ttttccttca
     3601 gcagcagcgt cacgaacgat attataggta tatctaaaat atcttaaagt tttttgtaaa
     3661 tcaattacat aaataccttt tctctcgcca aaaatgaatt ttttcatctt tggattccag
     3721 cgtcttgttt ggtgtccaaa atgcacaccg cattctaata aatctctcat actaaccatg
     3781 agtttctcct tataaattta gctttattcc tccacatccc ttaatttaca caagctaaaa
     3841 aggattgatg tgtgtgaaat gaagctaaga ttttatcaaa tttaagttta gtttttactt
     3901 atatatgtag tccttggtaa gacttagatt attattgatt tcttttgtga ttaaaaattg
     3961 aaacaaatcc acgcttccaa cacgaaaagc agaggcacaa gaacgaaggt acaaatccca
     4021 cattcttata aattcttcat catatttttc ccttaccttg tctaatactt tgttaaaatt
     4081 ttcatcccat aaatctaaag tttttgcata gtgcattctt aaactttctg ctaaaagaag
     4141 atgaaaatcc cactcgctca tagcacttac aacctctctt aaagaaggta aatatcctcc
     4201 tggaaaaata tatttatcta tccaagcatt tgtttttcct tcaaacatgg ctaaaataga
     4261 atgtaaaagc atagaacctc caggttttaa cacttgtttt actttcatga aataaagtcc
     4321 taaattctct ttacctacat gttcaaacat acccacagaa acaactttat caaaataatt
     4381 ttcaaattct aaatcttgat aattttgaag tcttatttct attttatctt caagaccaag
     4441 ttcttttact ctttccttag cttttttaca ctgctcctct gaaatagtaa ttccaacaac
     4501 cttaactcca tacttttgag ccgccataat agaaagccaa ccccagccac aacctatatc
     4561 taaaagcttt tctccttctt ttaaatcaag ttttttaagg gtatgttcta ttttgttaat
     4621 ttgagcttca taaagagtat tattaggctc tttaaaataa gcgcaagaat agctcatagt
     4681 atcatcaagc caaagcttat aaaaatcatt acctatatca taatgacttt taatattttt
     4741 actttcctgt ttttgggcta ttttactcaa gatatcctct gtatttttta aaaaacgctt
     4801 atttgaaaaa taatacaaaa ctttagctat ttcatcataa tcaccttcta tttctagttt
     4861 agactccata taatgttttg caaaaactaa actcgtatca ctaaataatt ttaaaaaagg
     4921 tattttttct ttgaaaatta aagaaaattt agcagactga ttacccacat gaaattcttc
     4981 ttgatcccaa aatacaattc taaaatttcc ataattccat tttgaaagaa taaatttaat
     5041 catttgtttt tcaagcatga catactccaa ttaataataa ttattattag atagtatctc
     5101 ttaattaggt ttaaaaatta ataaaaatga agaaaaaata agatttttgc cattatcact
     5161 aaataatggc aaaaaatgta atattaatgt aatttagacc aaacagaacg cttccaacct
     5221 atagcaaaaa tacttaaaat tacaaagaat atcattacat aaattcctgt agtttttctt
     5281 tcttctttct tgctatcacc cacttgatca atataagata caaccttagc ctgtgcagct
     5341 tctgttaaac ctactcttgg catagcggtt cctggaagaa gtttttgagt gttattaata
     5401 aaatcatgta aatattgctc accacgagat cttatcatca tagaaagatc aggcggaaca
     5461 gaacctaaat aagtttttaa atcattttga tttgatggag taaaaaagct atcgtatttc
     5521 atatcatgac aacgtccgca agcctcaata aaagttgctt tatctttagc aaattttata
     5581 tctttttcca ttaaagccac tttttgagca ctattttcca ttttagcata ttttgcctca
     5641 acatctttct taatagtagc atcttcattg gcttcaaatt taacactcac atctttaaga
     5701 taagcaatta cattggctat atttgcattt gtagcttctt cactttctcc tgaagtatct
     5761 ttattgtaag ctgtcataat aaaagcatca ccaaatttat gatctacttt taaagcaagc
     5821 gcaggatgca taatcaaagc agctaaaaat ttttcatcaa aaatagcacc agctgcacta
     5881 agatcaggtg gtattactcc catagaagaa tcagtaatat tagctgttat tccatcttct
     5941 tttacaccat gacatgcaaa acagttattt tcaaaaaatt ctttaccttt ttttgcatca
     6001 cccttagcaa aatcgatctt tgcaacatct gcccaaagtg tttcaacttt gcttaattct
     6061 tcttttgctt tttcaagttc tttgtttgca ctctctattc ttttagcatc tcctgaagct
     6121 tgtgcatctt ttagagctaa ttctttagct tcaactatac cttttgcaaa agtagtatct
     6181 tcaacagaaa aatcaaaatt tgcaggagca acatgaggtt tcatcactga atgagcataa
     6241 ggctctaccc cccaatatac aagcgcagta aaaactacca caactaaaaa tatttttatt
     6301 tctctcattg tttagctcct tttctctcca taatagtaat aaccggtaaa actacaataa
     6361 gtaaaagtaa aaatactata gaagcataaa atcctaccca agcatttaca cctgttggag
     6421 gtaattttcc ataaactgtt aaaacaatta aatcgataag caatatccaa aaccaaatga
     6481 aaaataaagg tctttcatga gccggtttta caacatcact tctatcaagc caaggaagca
     6541 agaagaaaat cacttgagca ataccaaatg cagccaaacc tatatcaaaa gctttaatac
     6601 ctgcaatatc aaagaaaaat cctcttaaaa cttcataact ccataagaaa taccactcag
     6661 gataaatatg agctggtgtt ttaagcgcat tagccggatc aaaattaatt ggatccattg
     6721 caaattcaaa tttaaaacag accaaataaa agaagaaaat cataaaaaag cttatataca
     6781 taaaatcttt tgataaaaat cctggccaaa aaggaatcac tttagaaccc tttgtgtcac
     6841 ctgccatgta tttttcagcc tctaaatcaa agtcaagttc ttcagaaatt tcattattaa
     6901 catgaggaat tcttaaagaa tagaagtgaa atgctataat agcaatgata actataggaa
     6961 gcaagcacac atgaagcata aaaaatcttg ttaaagttgg atcagaaacc gcataatctc
     7021 cacgaatcca aatcacaagc tcagggccaa taaatggtat ccctccaaaa agattagtga
     7081 ttacttgagc tgcccaataa ctcatttgtc cccaaggaag catataccca ctaaaagctt
     7141 cagcagaaaa tacaacaaac aaaagcatac cgctaaccca aatcatctca cgaccttttt
     7201 tataagaacc gtaataaatt cctgttagca tatgtatgta tataatcaaa aatacaacag
     7261 aagcggcaac accatgcatg tgacgccaaa gccatccata atccacctct tgcataatag
     7321 tcttattcac actatcaaaa gcaagcgcag tatctggttt ataatacatc acaagtaaaa
     7381 gtcctgtaat aaaaagcact gcaaatagag tggttaaaat aacccccatt gcccaaagaa
     7441 agttaatttg ctttggtatc caatacttta ccattaaaac atcaagcagt ttatgtactg
     7501 caagtctttg atcaagccaa tctacaaggc cattagcttt tctaatttgt gccatcttaa
     7561 gcctccgcta tcattttttt atattcagga ccctcttcac ctaaaacaag tttggttcca
     7621 tcaatcttaa aaggaggaat ttcaagaggc tttggaggag gtccaaagac attttttcca
     7681 cttgtgtcaa attctccacc atgacaggca catttaaaca attgctcact tggttggtaa
     7741 gcaggtatac aacccaaatg cgtacaaagt cctataacca cagtataagc tgcgttatct
     7801 accacaacat cacgtttttc atcttttggc atactcgcat ctttttttaa tataaaaata
     7861 ggctttttac gccattctat agttctaagc tctccatctt gcattcctga taaatctact
     7921 gtagtaaaac ctgcagcttt gacacttgga agcggatccc aagttttttt catcgcaaca
     7981 agcgagaaaa caccgcctac agcagctacg cttccaaatg caaagcccat aaagcttcgt
     8041 ctactctcag atgtagccat aacttgtcct ttcgatttta ttttttaacc aagttaaaag
     8101 tttatcgaaa ttaaaataaa ttttttcttt gtttaacaag ttttgatatt tagacaataa
     8161 gagcaaaaag agaaaaaaca agcacaggta aagttatcaa aaagccaaat ttacaatatt
     8221 gccaaaaaga aatattaatg ccttttctag ccaaaactcc aagccaaagc aaagttgcca
     8281 aagaacctat tggggtaagt tttgggccta tatttactcc taaaagatgc gcataaatca
     8341 tcaaagaatc aaaagaaaaa ttctcaaaat attcttttaa tgccaaatct ccgattaaaa
     8401 ccataggcaa attattaaac acagaagatc caaaagccga aatcaaagcc actccaaaaa
     8461 ttccactctt atcttgcatc aaaaaagtat aacttttaac caaaatttca ctcacaccta
     8521 ttttatgtaa agcaaaaact accatataaa gcccaaaact aaaaagcaaa actccataag
     8581 gtgcttcaaa aagaatttta atactttttt taccttgaat ttttaaaaca ataagccaaa
     8641 aaattcccgc ccaaagcaaa gcaaaaaaac ttattttaat atcaaaaatt tcacctataa
     8701 aaaaactgat cacaaaaaga aataaaaata ctatgcaaag aaaaaacaac ttcgatgaaa
     8761 tttgctcttt tttgactaat ttaaattcaa gccttttagg caaaactctc acataaagca
     8821 caaaaaccat aactatagta gaaagtaaaa caaaaaaatt gggcaaaaac atatttttag
     8881 caaattctaa aaattctatc ttaaaataat ttgctgtaat gatattggtt aaatttgaaa
     8941 taaccaaagc atttgaactt gcatcacata aaaaagaaag actaagtaaa aaagaactta
     9001 aaataaaagc atgattttta caatctttaa gagttgaaaa taaagctata ataataggtg
     9061 taatgattaa aatcgctcca tcgttagcaa aaaatgcaga aagaaaaaag acaaaaatca
     9121 acaaaaataa catcaatttt tttgtgctga tataaatttt ttcttgattt ttctctctag
     9181 aaaaatgcaa aattttactc gcaataaaat caaaaaatcc caaagcttcc aagctaaaag
     9241 aaagaataat caacccaact aaagttaaag aactatccca aaccaaagaa aaaacaaaat
     9301 aagcgtcttt aaaatctacc aattgaaaaa taaaaacaaa aaaagccccc aaactagaaa
     9361 atacccaaat aggtaaattc catggacgcc aaaaaagtaa aactaaagta gataaaaaaa
     9421 taaaaaaagc aagcatttaa gcttttttct tttgcatttt gatataaatt tgtaaaatat
     9481 ctaacgctgc aggagtaatt ccactgattt gacttgcagc aaaaatggtt ggaggtttat
     9541 gatgattaag cttttctaca acctcattac tcaaaccact tacactttta aaatcaaaat
     9601 tttcaggaat tttaagctca ctaagatttt tcattttttc tacttgagct ttttgcatgc
     9661 tgatataatg ataatacttt gcctcgttta aaatttctct taaagaataa ttatccatag
     9721 tttcaaacat aggatcaagt ttttttaatt tttctatatc aaaacttgct cttgcaacaa
     9781 ttttttgaag attgactata gaagaaattt tatcttctcc taaactctct aaaaaagcat
     9841 tattttggtt attaggcgta aattctttag aaagtaaaaa ttcaagtcct ttttgaagat
     9901 tgtttgcaat attttgtata taagtaaaat cttgctcgct taaaagcccc aaatcatagc
     9961 catattttcc aagtctaagt atagcatttt cttcccttaa aagcagtcta aattctgctc
    10021 ttgaagtaaa cattctataa ggttcttttg taccttttac taccaaatca tcgattaaaa
    10081 ctcctatata agcttcatca cgccttaaaa tcaaaggctc tttcatatct atacttaaac
    10141 ttgcattgat tcctgccata aagccttgtg ctgcagcctc ttcataacct gtagttccat
    10201 taatctgtcc tgcacaataa agatttttaa tctttttaag ttctaaagta tgcttaagtt
    10261 cagttggctc tatataatca tattctatag cataaccaaa acgggttatt ttagcatctt
    10321 caaaaccctt tacagaacgc agcatttgaa tttgtacctc ataaggcaaa gaagtagaaa
    10381 aaccgttgat ataatactct gtcgcatcga tagtttgagg ttctataaaa agatgatgac
    10441 tttctttgtc gctaaaacgg ttgattttat cttctataga aggacaatac cttggcccta
    10501 caccttcaat ctgtcctgta aaaagtggag cacgataaaa attattctta ataatctcat
    10561 gtgtagttgt attagtgcgt gcgatataac aaggaagttg agtaggattg aaattttttg
    10621 aacgaaaact aaaagcttta ggatttacat caccatcttg aatttcaagc acgctaaaat
    10681 caatgctttt tgcatccact cttgggcaag ttcctgtttt taaacgcccc attttcaaac
    10741 ccaaagtttg tagataattt cctaaattta ccgaagcaag ctcccctacc cttcctgctt
    10801 gaagtttatt ttcacctaca tgaataagtc catttaaaaa agttcctgtt gttaggatca
    10861 cttttttggc aaaatatgta ttttctaaat ttgtttttac gcctttaact tcatcatttt
    10921 ctacgattaa aacactcgct tgttcttgag agatttctaa atttggaagt tttaaaagtt
    10981 tattacgtgc aatgatacgg tatttatcca tatcaatttg tgccctactt ccttgaacgg
    11041 ctacaccctt actctcattt aaaatgcgaa attgtatccc tgcttcatcg gtgatttcgc
    11101 ccataagacc acccatggca tcaagttctt ttaccaaatg ccctttagca agccctccta
    11161 tagccggatt acaacttgcc gctcctattt gctcaatcaa tgtagttaaa agtaaagttt
    11221 ttttacccat tctagcagca gcagcacttg cttcaacacc tgcatgtcca ccacctataa
    11281 caatgacatc aaacatattt tgccttgaaa aatgtgaatt ttaaagaaag attatataat
    11341 atttagactt aaaacaaact cgttttaagt ctaacaaaaa tttatttagc ttcttgaaga
    11401 gagaagatta gctcattata agttttatct gcatctttac agaaattttt aagcatctca
    11461 acacccttat ttaaaccttg ttgctgttct actcttaaaa gatcactata aaggctttct
    11521 attgtagaaa tagcgctttt atttggcata cgacgaacgg aataatagcc tatgatatta
    11581 ttattaatgt ctattgatgg agttacattt gcaaaaaccc agtagtaatt gttatctttg
    11641 gttttgtttt ttacgtaagc aaaaatttct ttgccttctt tcatataatc ccataaatat
    11701 ttaaaaacag tttttggcat ttcttcatgt cttactatgt tatgaggttt atttaaaact
    11761 tcacccatag tataacctgc atactttaaa aaatcatcat ttgcataaac tattttacct
    11821 tttaaatccg ttttagaagt aattaaacta tcttcttgta aaaaaatttc tcttgacatt
    11881 ttcccaccct cttaatttat atttttaatt ttgctaagat ttcagcactt ctttgctcta
    11941 gtgatttaat atcatttaca atcgcatcat aagctttttg atcgatataa tcttgacttg
    12001 attcttctat tgctttttta gcgttatctt ttataaattc tttagctaaa tttaactcag
    12061 tttcagaact aagctcatta ataacacctt gagctctctc atcttgacaa agattagaaa
    12121 ttggatctac actttcaaga ttgaaatttt gagccccatt taaatttaaa tatatatttg
    12181 atttataaag aatatgatcg attttaacca cagacaaaat caatctcttt gcaaaggatc
    12241 caaaattaac accaagagca ctactatttt cttctagacg tttaaaagct tgagaaaatt
    12301 tattaattct ttcttcagat tcactaacaa tgttaaaaac ttgctcactg ccactttgga
    12361 tatttacaaa atcttgttgc atagtctgaa ttgcaataga aatttcgctt gtagatcttt
    12421 gagttctttc tgctaacttt ctaacttcat cagccacaac cgcaaagccc ctaccatgct
    12481 ctcctgcacg cgcagcttca atagcagcat ttaaagctag aagattggtt tgatcggcta
    12541 tatcgcgtat tacttcaacc actgaagtga tattttgtga attagccaca aaagtttgta
    12601 ctgtctcctt gctcgaattt acaacatcca ttaaagaacc catagcactt tgcaaagaat
    12661 ccacctctga accattttct gtagctgtat gagaaatggc atccactgta tcatatacat
    12721 ttttcatcat gctaatatct tgatttaatg agctagaaat ttgagacatg tctttatttt
    12781 gatttccaag gcttaaatcc attaaagttc ttgataaagc atttttaaaa gtagatcttg
    12841 ctgtcacttc tatgtttgct aaagctttat ttataaattc gatattatga gcaaaaattc
    12901 cttttaaacc ttcaggcaaa gccttgcgat aaaattcacc tttttgagaa caagaaatag
    12961 aagtattaat ttcccttaag taagcttcta gcccatcaat agtattgtta agattatctg
    13021 ctatttcggc taattttttg ctttttgttt ttacatagat aattctattg tcaaaatttc
    13081 cttcttttaa ctctctacaa agaaccaaaa gtttatctat cattatttgc tcatctttgt
    13141 gttgtctaag caaataaatc attaaaacag cgattaaaac aaaaattatc gctccaacaa
    13201 aaatatgaat aaaaatgaca cctaaaacac cgataatact tagaaaaata gttaataata
    13261 atccattttt caccataaat ttaccccttt tattgaaaat tttttgaaat cataaatcaa
    13321 aacaa
//
LOCUS       DAZAND010000048        13159 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.048, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000048 DAZAND010000000
VERSION     DAZAND010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13159
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.048"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..182
                     /locus_tag="ACHDOB_001028"
     CDS             <1..182
                     /locus_tag="ACHDOB_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325954.1"
                     /translation="KKIKYFILDKFDYSYPILTKDTKCSFCENFFPIEYSSNLKTIEK
                     ECPFCNNKMDIKLKD"
     gene            complement(179..1210)
                     /locus_tag="ACHDOB_001029"
     CDS             complement(179..1210)
                     /locus_tag="ACHDOB_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HFN3325955.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(1289..2185)
                     /gene="sppA"
                     /locus_tag="ACHDOB_001030"
     CDS             complement(1289..2185)
                     /gene="sppA"
                     /locus_tag="ACHDOB_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HFN3325956.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILMPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVVDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            complement(2173..3402)
                     /locus_tag="ACHDOB_001031"
     CDS             complement(2173..3402)
                     /locus_tag="ACHDOB_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HFN3325957.1"
                     /translation="MFIAAARYLFLCDEDFTILENQAFVFEDKILELGELDNLRKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSMLNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASQKGIRVVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAYFALDLAKKQNLLVSTHFLESK
                     AENIWLRESKGGVKKWLENFTLHPKPLYAPKDFAKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMATLYPARALNLNLGELKKGKIADFSVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            3493..3972
                     /gene="aroQ"
                     /locus_tag="ACHDOB_001032"
     CDS             3493..3972
                     /gene="aroQ"
                     /locus_tag="ACHDOB_001032"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HFN3325958.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            3975..4448
                     /gene="folK"
                     /locus_tag="ACHDOB_001033"
     CDS             3975..4448
                     /gene="folK"
                     /locus_tag="ACHDOB_001033"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HFN3325959.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            4458..5912
                     /gene="flhF"
                     /locus_tag="ACHDOB_001034"
     CDS             4458..5912
                     /gene="flhF"
                     /locus_tag="ACHDOB_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HFN3325960.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLTKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSF
                     FSTGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            5905..6771
                     /gene="flhG"
                     /locus_tag="ACHDOB_001035"
     CDS             5905..6771
                     /gene="flhG"
                     /locus_tag="ACHDOB_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HFN3325961.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDELKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            6790..7146
                     /locus_tag="ACHDOB_001036"
     CDS             6790..7146
                     /locus_tag="ACHDOB_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325962.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNESKERRRNAKRAA"
     gene            7127..7819
                     /gene="fliA"
                     /locus_tag="ACHDOB_001037"
     CDS             7127..7819
                     /gene="fliA"
                     /locus_tag="ACHDOB_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HFN3325963.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNNNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLENECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            7819..8898
                     /gene="fliM"
                     /locus_tag="ACHDOB_001038"
     CDS             7819..8898
                     /gene="fliM"
                     /locus_tag="ACHDOB_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HFN3325964.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            8895..9737
                     /gene="fliY"
                     /locus_tag="ACHDOB_001039"
     CDS             8895..9737
                     /gene="fliY"
                     /locus_tag="ACHDOB_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HFN3325965.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNASDTLKAP
                     LVYAIFDIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            9806..10411
                     /locus_tag="ACHDOB_001040"
     CDS             9806..10411
                     /locus_tag="ACHDOB_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009691 - cytokinin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HFN3325966.1"
                     /translation="MDTKIIKDVEKFENIPDLEKAITFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            10411..11427
                     /gene="mnmA"
                     /locus_tag="ACHDOB_001041"
     CDS             10411..11427
                     /gene="mnmA"
                     /locus_tag="ACHDOB_001041"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HFN3325967.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(11455..11706)
                     /locus_tag="ACHDOB_001042"
     CDS             complement(11455..11706)
                     /locus_tag="ACHDOB_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HFN3325968.1"
                     /translation="MFFVFLVQLALGAPPLLYAFIMIASGNVMMALTHYAIGTAPVIF
                     GTGCVTLKKWWSIGFVISIVDIVVMIAVGLIWWKILGFY"
     gene            complement(11924..12139)
                     /locus_tag="ACHDOB_001043"
     CDS             complement(11924..12139)
                     /locus_tag="ACHDOB_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HFN3325969.1"
                     /translation="MFITATAPNPLVLYFLSPLEIKSTPNASTFTKDKLKELVKMKNS
                     EKIMLSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(12082..12426)
                     /locus_tag="ACHDOB_001044"
     CDS             complement(12082..12426)
                     /locus_tag="ACHDOB_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HFN3325970.1"
                     /translation="MARGVIKTGLGEHLAYHFISILGKKTLGIAYSIAFCETILAPVT
                     PSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTYLSLVNYQEPILFHQLCLLQLQ
                     LQILWCFIFSLR"
     gene            complement(12649..12798)
                     /locus_tag="ACHDOB_001045"
     CDS             complement(12649..12798)
                     /locus_tag="ACHDOB_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
                     /protein_id="HFN3325971.1"
                     /translation="MEDNSWHFLGLFIAVIMAVILQVMPLGPVCMIAIAIVALSGITT
                     TQLKI"
     gene            complement(13026..13123)
                     /gene="ffs"
                     /locus_tag="ACHDOB_001046"
     ncRNA           complement(13026..13123)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="ACHDOB_001046"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
BASE COUNT         4873 a         2059 c         2112 g         4115 t
ORIGIN      
        1 ataaaaaaat aaaatatttt attttggata aatttgacta ttcctatcct atactaacca
       61 aagatacaaa atgctcattt tgtgaaaatt ttttcccgat agaatatagc tcaaacttaa
      121 aaacaataga aaaagaatgt ccattttgca ataataaaat ggacattaaa cttaaagact
      181 aagccttagt tttacttaca atattaataa tatttgaagc tacttcatca gcaagttcta
      241 aatgggaagt aaagcctaca caagaacaat taatctcgcc taaaacatat ttatcattgc
      301 ccttttcatc agtatctaaa ataaaatcag ccgtccaaat caatggtaag tcgtaattgc
      361 ctaatttttc ccttacctta ggaagctcgc ctaaaaacat atccaccaaa gttttccaat
      421 cttctggctt atcatagcga tattttgccc cactaaaaag cgtagcagaa aaagcatcag
      481 catcttcagc tggtttttta tgcactacat ttacaggggt gttataaagc attaaaagtc
      541 tgatttcacc ttctttaatg cgcggtaaaa aagtcatatc cacaagcata ccattatcac
      601 ctatgatata ttgctcacaa aaatccataa attctccaag ttctctatgt tctacatgat
      661 tatccttagc ttctgtgcat ttgatttttg tgtttaaagg caaactatct ccactaacat
      721 taccctctac actcacacgc caaattccct ctcctgtaga gccacgattt tgttttaaaa
      781 ccctttcacc tttagccaaa ctttttggaa aattttcttt aaaagtctta atatcatagt
      841 aagcataagt atcgcttgga acaagatcag tatctgctaa ttttgtaagc gcatctttag
      901 cgccataacc tatcatagca tcaggatgag gcatacctac aagcttatcg gcacaaagtt
      961 ttcttaacat atcaaaatac tcattttctt ctttaagatt gccaggattg atgcgagaaa
     1021 cataaccatc aaaattttct tttacatatt tgtaaatttc atctttttta cccacttcaa
     1081 aaaaaatcac ctcagcattc caacccttag cttttaaggc atttaccata ggcatagtat
     1141 cttttctata accatcttca cctttatcac tcccaccttt aacttcgaaa aaaacaatat
     1201 tttttttcat tattttactc cttatctaag atataaataa ttattgcata aaaatattac
     1261 aaaaattaaa taaaaatatt tatatatttt atctagcgtt tataaaactg ctattagtct
     1321 tataagcgat ttcgattaag cttttactta tcaagcttga tgtttgtcct tctaggcgat
     1381 taagaaattt atcaatctta tcttcttctt tccaaacagg atttgaaaca ttagcaagtt
     1441 tttcaagctc ctttttagca ttttcataat tactaagctc atctataaga ccaagctcct
     1501 tagctttggc agctaaaaac actcttgcat ttgcccattg atctttttta ttaagatcta
     1561 atgctctttc cttggcaaca aaacctgtaa aaagatcata actttgatca attaaaccct
     1621 gtaaaaaatt tctttcattc tcattccaag ctcttgcaaa agttccagca cttttaaatt
     1681 cacctgcttg aatagtttgt tctttaatac cgagtttatt agccaatccg cttaaatcag
     1741 ctccttgcat aatcacaccg atagagccta taaaacttgc tggattggct aaaattttat
     1801 tagctccaac tcctgctaaa taacttccgc ttgccatagt tccgcttgca taaacaagca
     1861 caggcttttt aatttttaaa tcctttatag ctagagctag ttccatacta ggagcaaaag
     1921 ctccaccagg agagtctaca acaaaaagca ctcctttaat attgctatca tttttagcat
     1981 tgataatttt ttccaaaacc gcagagctat caaaaatttc accctttaaa tcaatgcgtt
     2041 ctaaatttgc aagattggag cttgaatttg cactaggcat taaaatccat ataacaatca
     2101 acaataaaac aaaggtttta aaataagtat tgataaattt tataccgcat cctaaagcct
     2161 taaaaaatga ttttaaaatt tgcattcttt tccttttata aataatttat ccacttcctt
     2221 agcatttaaa ataaactgca aaggagcttg ctttttatca cattctccta gctcaaatac
     2281 gctaaaatca gcaattttac cttttttaag ctctcctaaa tttaaattta aagcccttgc
     2341 aggataaagc gttgccattt gcaaaagctt agaggctaac tctaataaat caaaattctt
     2401 atgtataagc aaattcgcgc gcatttcatc aagtaaggac aatgaaatat ttgagctaag
     2461 tccatcggtt cctaaatgga tattcaatcc actttttaaa gctgttttta aatctaagct
     2521 tttttgactt aaaaggcgat ttgaaaatgc acaatgtgta atagaatgta aatttttatc
     2581 caaccattca tattctttta gataaacaca atgcgtaaaa agagtcctta ctcctttaaa
     2641 gagtttagca aaatcctttg gtgcataaag aggcttagga tgaagtgtga aattttcaag
     2701 ccatttttta accccccctt tagactctct aagccagata ttttcagcct tgctttctaa
     2761 aaaatgcgtg ctaactagta aattttgctt tttagctaaa tcaagagcaa aataagccaa
     2821 actaggatga gttgaataag gagaatgaat cgaaattgct gggataaaaa aatcattttt
     2881 aaatttcaaa gaattttcaa atctttttaa aaattcttgt tttttatctt caacttgatt
     2941 ttcatttgta cccaaaattt cattaaaaaa tactacacgt ataccctttt gactagcctt
     3001 taaacaagga tctaaatcac tcccaaaact tgaaatttca cctatagtgc ctataccgct
     3061 tttttgcatt tttttaatgc tttgaagtat taattcttct ttggcctgcg catttaacat
     3121 ggaacgagaa tttataacac ttttaagcca aattaaaaat tctccaaaat gtaaagttgt
     3181 tgaatttgca ctaaattcta agtgtgtgtg aggatttata aaagcaggta aaataaccga
     3241 atttttaggt gttttgataa ttttagcctt gggatatttt tttcttaaat tatccaattc
     3301 acccaattct aaaattttat cttcaaaaac aaaggcttga ttttctagta ttgtaaaatc
     3361 ttcatcgcat aaaaaaagat atcttgcagc agctataaac acgattttcc tttcaaaaat
     3421 tacattgtag caaaaattta tttttaaaat gttataataa aaggttaaaa ataaattttt
     3481 aaggttaaat ccatgaaaat aatgattatc caaggcccaa atgttaatat gcttggcgta
     3541 agagaagtgg gaatttatgg tgctatgaaa atggaagaaa ttcatgagca aatgaaactt
     3601 gcagcatcgc aaaacaatgt agaacttgac tttttccaaa gtaattttga aggtgaaatc
     3661 gtagataaaa ttcaagaatg ccttggaaca gttgatggaa ttattatcaa tgcagcaggc
     3721 tatactcata cttcagtagc tattcgcgat gctattgcag cagtagcttt acctacaatt
     3781 gaagtacata ttagcaatgt ttatcgcaga gaagaatttc gtcaaaaaag tcttatagcg
     3841 cctgtatgtt ctggaactat tgttggtttt ggtccttttg gctatcactt ggctttaatg
     3901 ggtataattc aaatttgcga acaaataaaa aatttgcgcg cgatgcaaca agcacaacaa
     3961 acgaataaat aataatgcta aaaattcaag gagtaaaaca ctttgaaaaa agtcgttttt
     4021 ttcctttttt tagtcaaaat atacgatctt ttaaatattt agctcttata ggcttaggaa
     4081 gcaatataga gcccgaaaaa aaaagatttg atatgctttt tcgagtaatg atggatgata
     4141 aaagatttaa aattttatcc acatctccta tgttgataaa tgaagccttt ggttttaaag
     4201 agcaaaaaga ttttaccaat gctgttatgt tgatacaaac taatttgcat gcacgagcac
     4261 ttttgaaagt tttactttat tatgaagtaa aatttaaacg caagagaact ttcaaaaacg
     4321 ctcctagaac gcttgattta gatcttttat acttttcaca aaaagtcaag cgtgataagt
     4381 ggtgtgaggt gcctcataaa ggggctaaag aaagagtgag tgtaattttg cctttaggca
     4441 tgatataagg aatataaatg ggacaactta tacatacttt tactgttgaa gatacagaac
     4501 aaattatacc caaagtaaaa gaagattacg gagataaagc tttaattata acaaataaac
     4561 aaattcgtcc taaaacctta aatcgcagtg cgctttatga ggttatggta gccatagaag
     4621 aaagcgacta tgaagaacac ttaaaaaaac aaggaaaatc tttacctgca aaaaaaagct
     4681 cgccaaaacc atcttctacc tctcttgcag aagaaaaaat tagatctcaa atccctcaag
     4741 aagatgaaga tgtagtcttg gatttctcaa acactcgctt aaatacaaat ttaaacactg
     4801 taaaaaacaa tgacttaact aaaaaaacct atcaagattt tccacaaaac aaaatcaacc
     4861 ctcatcaaaa taagactcta ggctttgatg attttaaaga aaaactaagt gaagttagca
     4921 atgaaatttc taaagtcaca aacacacctt tagaaaatta cacccctaat ccaaattata
     4981 ataaaaaaat agaaaatttt gaaaagcaat ttgaaaaaca aatcaacaag cttaacgata
     5041 aaatagatct tcttgcagat atgatgtggg acgataaagc tgaagctaga aaaaatctta
     5101 tgatacctcc tgaatttgca agtatttata aacaagccaa agaaagtgga atgcttgaaa
     5161 atcatctaga agcgattatg aaagcaacta tagaaaatat gccagctgct atgaaaacca
     5221 acaaagatgc ggttcaaaga tattttcact cacttttaag aaatatcttg ccttgtcgtg
     5281 ttgaaagcga tataaaaaaa caaaaaatca tgatgctagt aggcccaaca ggagtcggaa
     5341 aaacaacaac cttagctaag ttagcttttc gctatgctta tggagataag cgttataaaa
     5401 caggtattat tacgcttgat acttatagaa tcggtgcggt tgagcaactt tttcagtatg
     5461 caaaaatgat gaaacttcct attattgata gcatagaacc aaaggattta gatgaagcga
     5521 taaaaagctt aaataattgc gaagtaattt tagttgatac tataggaaat tcacaatacg
     5581 atcaaagcaa acttgctaaa actaaagaat ttttaatgca ctcaaatgca gaaattgatg
     5641 taaatttagt ggtttctgca aacaccaaac atgaagattt aatggaaatt tataaaaatt
     5701 tttcattctt aaatattgat actttgatta ttactaaatt tgatgaaaca aaggtttttg
     5761 gaaatatctt ctctcttatt tatgaaacaa atattcctct aagctttttc tctacaggac
     5821 aagaagtgcc agatgattta gaagtagcca atagtgattt tctagttcat tgtattttag
     5881 aagggtttaa caaaggaaaa aataatgaat aaccaagcaa ataaacttcg caatctcatg
     5941 agtcaaaatg gaaccaaaaa atcccaaaac actcatttta tagctattac aagtggaaaa
     6001 ggtggcgttg gaaaaagtac gattagcgca aatctagcca atgttttagc aaataatggc
     6061 tataaagttg ggctttttga tgctgatatt ggcttggcaa atttggatgt cattttaaat
     6121 gtacgcatac aaaaaaatct cttgcatgtt ttacgcggag aatgttcttt ggaagatatt
     6181 ttaatagaag ttaagccaaa tttatggctc atcccaggcg aaagtggaga tgagatttta
     6241 aaatataatg ataaaaatat ttacgagaga tttttaaatc aagcaagtat tttagatgag
     6301 cttgattttc ttattatcga cacaggtgcg ggtattggtg gaaatatttt aaatttttta
     6361 gaaatggctg atgaagttat agtagtaact gttcctgatc ctgcagcaat cactgatgcg
     6421 tatgcaacca taaaaacaac ttctaagaca aaagaaaatt tactaatgct ctttaatgtt
     6481 gtaaaaaatg aaaatgaagc tttaaaagtt tttgaaaata ttaaaaaagt tgcagatgca
     6541 aacattaaaa atcctttaaa tttagaattc ttaggtcatt taagcgcttc taaagatgta
     6601 agtggtagta ttaaaaaaag aactttattt agcgatgaaa acacagcctc aagtgatgag
     6661 cttaaagccc tagcctccaa gcttttatat agattggaac ggaaagtgct tgataatgtt
     6721 tcaaatcgta gtttttcaag tttttttaga aaaattattg aaagatttta gcaataaaga
     6781 gaagagatta tgaggccaga aaattacgta gcatttttca ctgtttgtgg attttttata
     6841 ggacttgcat ttagcattat tagtatagat gaagcctttg atatactgat ttttacttgt
     6901 tttattactt ttatgtttta tgtttttgtt catattgcta ttatgaattt tatagatgta
     6961 aagaaaatta gtggcagaat ctttaataaa cacgattatg aaaaaactag caataatatt
     7021 atcaacgatt tagttattcg tgaaaagaaa atggatataa ttttagaaaa gctcaatgaa
     7081 gaaagagaag agctaaagaa aaatgaatcc aaagaaagac gaagaaatgc taaaagagcc
     7141 gcctaaagct tatgcacaaa tgctaaagaa agagcaagat gagcttgtac tttcttacat
     7201 gccagctcta cgtgctatgg cttttagact aaaagaacgc ttgccttcaa gcatagatgt
     7261 taatgatctt attagcatag gcgttgaaga aatgataaag ctttcacgcc gttacgataa
     7321 agaacaaaat aataacttct ggggttttgc aagaaaaaga gttaatggct ctatgcttga
     7381 ttatcttaga agtcttgatg taatgagtcg caataatcgc aaaattatta aagatattga
     7441 tgcaatcatg gatgaatatt tccttgagaa tgaatgcgaa cctgatgatg agtatctagc
     7501 caaaaaactt gatttagatg tagaaaaaat caaagaggta agaacagctc atgctattag
     7561 ctataccctg cccatcgatg agcaaatcga actttataac gaagacaata ctttagaaaa
     7621 aattgaaaaa gaagaacttt tagaaaaaat tcacgaagtg ctagatgatc ttaaagagcg
     7681 cgatcagtta attattcagc tttattatta tgaagaatta agcctaaaag aaatcagtga
     7741 aattttacaa atcagtgaaa gcagaatttc acaaattcac aaaaaacttc ttaaaaaact
     7801 tagagaaagg ctagtgtaat ggctgagata ctttcccaag aagaaattga tgctctactt
     7861 gaagttgtcg atgataacac cgacacaccc atagcctcaa attcaaaaga tgaaaaagat
     7921 gaaagaaata tcgttgtata cgattttaag cgtccaaaca gagtttcaaa agaacaactt
     7981 aggacgatta aaggcataca tgataaattg gcaagaaatt tagcctctca aatttcatca
     8041 atgatgagaa gtattgttga aactaaactt cattcagtcg atcagatgac ttatggagag
     8101 tttttaatgt ctttgccaag cccaacaagt tttaacgttt tttctatcaa acctttagat
     8161 ggaaactgtg ttttagaaat caatccaagc atagcttttc ctatgataga caggctttta
     8221 ggtggtcaag gcgatagcta tgaagcttcg cgtgagctta cggatattga gcttaatttg
     8281 cttgattcta ttttgcgtat cattatgcaa agacttaaag aaagttgggc tactgtaact
     8341 gaaatttatc ctagtataga agctaaagaa tcaagtccaa atgttgtgca aatcgtatct
     8401 caaaatgaga ttgttatcat ggtagtaatg gaaatcatca taggaaattc aagcggtatg
     8461 gtaaatatct gctatcctgt agtgcattta gaaagtatat taagccgttt ggcaaaccgc
     8521 gacattatga tgggtgaaac ctcagccaaa aaatcacgca acaaagaact taaaacttta
     8581 atcggtcgtg ctgaagtggt atatgaggca attttaggaa aaaccttaat taatgttcat
     8641 gaatttctag aacttaaaca aggcgatatc ttaagacttg atagagaagc agatgataaa
     8701 gctatagtaa gcatcgataa aaaagatgtt ttcttagcgc aaattggatt gcatcgtttt
     8761 agaaaatcta ttaaaatttt agaactcata cgcacagata aagatgaaat caaagaaatt
     8821 ttggaaaaat acgaagaaga acgtaaagct aaagctagtg tttatgatga gcctgaagag
     8881 gaggatgaag aaatatgatc aatgattttt taaaaatgtt tacaaatgaa tgcatcagca
     8941 ccattgaagg tttaacagga aaaagtgctg aatttagcga atacaaagaa tttgatgtca
     9001 atgcaagcga tactttaaaa gcacctttag tgtatgctat atttgatata gcaaatggtg
     9061 gaaaaatagg aattttagcc ggtgctgttt taatgagtgc tattggtgaa tggatgatgg
     9121 gtgaagaaga gatcaccaaa aacgataaac taggtcctga tgaaatggat gcagctaaag
     9181 aagccatcca aaatatcatt tcagcatttt ctacaacttt aggagctcaa aaagacattc
     9241 caaaaatgga ttttagtata gaatcttgtg aatttgtgcc tgaaagcgta gattttaaag
     9301 attttaaaaa attattttta tatgatgtaa aaataggcga tttagaagaa caagtttctt
     9361 tagccatgga tcaaacactt cacaacattc taagtggaaa acctgctgaa acaggaaata
     9421 caagcactga ttctaatcac aacgctgaag aaaaagcgat aatgcttagc gaagaactta
     9481 aaaatatcaa tcttatcatg gatgttcgtt tgcctgtgcg tgtgcgtata ggcaataaaa
     9541 aaatgctttt aaaagatgtt ttaactatgg atataggttc agttgtggag cttaatcaac
     9601 ttgcaaacga tccgcttgaa attttaatcg gagataaaag aattgcttat ggcgaagtag
     9661 taattgtcga tggtaatttt ggtgttcaaa tcacagaaat cggatctaaa aaagaaagat
     9721 tagagcaatt aagataaaat tactctataa atttaaaaaa attagctata atgatttttt
     9781 atagttttgc caaaaaaggt atttgatgga tacaaaaatc ataaaagatg ttgaaaaatt
     9841 tgaaaatata cccgatctag aaaaggctat tacttttttt ggttcagcaa gacttaaaga
     9901 agataatttt tattatcagc aggctaaaat tttggcacaa aaatgtgctc aaaatggttt
     9961 ttgtgtgata agtggtggag gtggtggtat tatgcgtgca gccaacgaag gtgctttttc
    10021 acaaaaaaat aatacaaatt caatgagttc tgtagggttt aatatatttt tacctcacga
    10081 gcaaaaactt aatgattttg tagaatataa tattactttt gagagcttag ccatacgcaa
    10141 aatggctctt attgaaaaga gtctagcttt tgtgatcttc ccaggcggct ttggaacact
    10201 tgatgaattg tgtgaaattc ttacattaaa acaattagaa tttaaaaaag atgttcctat
    10261 tattttgttt gggagtgaat tttggcgagg ttttgatgag ttcgtcagaa attctttact
    10321 caaacttgaa gtgatttcta aaggagatga gttaaagtat aaaatcactg acgacttgga
    10381 ttttataatt aatactttaa aggaaattta atgaaaattc tagtcgctat gagcggtgga
    10441 gttgatagta cagtcactgc ttataaactt aaaaatttag gtcatgaagt tataggttgt
    10501 tatatgaaac ttcatggcaa accaaattat cacgaagaaa atatcaaaaa agtagaaaaa
    10561 gttgcaaact ttttgcaaat tccttatcat attttagact tacaagaaga ttttaaaaac
    10621 aaagtttaca tgccttttgt ggatacttat aaagagggta aaacaccaaa tccttgcgct
    10681 ttatgtaacc gttttatcaa acttggaaaa cttttagaat ttgctaaaag tttaggttgt
    10741 gaaaaacttg ccacagggca ttatgcaaga cttgaaaaca acttaataaa aaccgcagta
    10801 gatgaaagca aggatcaaag ctatttttta gctagcgcag ataaagaagc tttaaaatat
    10861 cttatttttc cgctaggcga aatgaaaaaa gaagatgtga aaaaatttgc ttccactata
    10921 gaggttttaa aatcttttgc cacccaaaag gaaagttctg aaatttgctt tgttgaagat
    10981 acttatgtgc aagttttaga tcagtttatg gatacaaaaa ttcctggaga agtattagat
    11041 agtagcggaa aagtggtagg caaacatgag ggctatatgc actataccat aggcaaaaga
    11101 aggggctttg aagtgcgtgg ggcacatgaa ccacattttg ttttaaaaat caatcctaag
    11161 caaaaccaaa tcatcgtagg aaccaaagaa gaacttaaaa tcagtgaatt taacctaaaa
    11221 aatatcaatc tttttataga cgctaaagag cttgattgcg aagtgaaaat ccgctatcgt
    11281 tcaaaatcca caccttgcaa ggtagaaatt tatgaagata aaagtgcaaa aatcatccta
    11341 aaagatcctg tttatggact tgctagcgga caaatggcag tcttttatga tcatgataaa
    11401 gtcatagcaa gcggttttat agaataattt ctaggaatta attcctagaa attattaata
    11461 aaatcctaaa attttccacc aaataagccc aacagctatc atcactacta tatcaactat
    11521 ggaaatcaca aaacctatac tccaccattt tttaagagtt acacagcctg ttccaaaaat
    11581 aacaggagct gttcctattg catagtgagt taatgccatc ataacattac ctgaagctat
    11641 cataataaaa gcataaagaa gtggtggtgc tcctaaggca agctgcacta aaaaaacaaa
    11701 aaacattgct gatatatgag ctgcaatgga agcaaagaaa tagtgtgtat ataaaaaaag
    11761 caaggcttaa aaatatcata atagaaattt ccccaagtcc catagcagaa gcaaattcac
    11821 cttaagcttc agctaaaaac tgtgtaacgc caagtttgcc aagtaaagtt gccatcatta
    11881 caagagctga aaaccatact aaagcaaagc cacactagtc gcatcaagag aaattccaaa
    11941 aaaacaagcc caaagctcca gcccataaaa gtaaaagcga gacaaaaaca ctgagcatga
    12001 ttttttcact atttttcatt tttacaagtt cttttaattt atctttagta aaagtagaag
    12061 cattaggcgt ggatttaatt tctagcggag agagaaaata aagcaccaaa ggatttggag
    12121 ctgtagctgt aataaacata gctgatgaaa taggattggc tcttgataat ttaccaaaga
    12181 aagataagtg cctattttat tttgtgttcc atcttcagga gtggatttaa aacttcttgc
    12241 aataacttga actataggat ttatgatagc ccctgctctt gcagtatttg aaggagtaac
    12301 tggagctaaa atagtttcac aaaaagctat agaataagca atacctaagg tttttttacc
    12361 aagaatactg ataaaatgat aagccaaatg ctctccaagt cctgttttaa taactccacg
    12421 agccacaata atagaataac tataagctaa ataagagaat ttgaaaaacc acttaaagcg
    12481 tcttttatac ccgttttaga ttttaaattt gatatagcag tatttacctt ttcatcttat
    12541 actcttttga tataaaaaat caagtactga agtatttaaa ggaaatttta gtctcatcaa
    12601 taagttgttg cgtagaagtt ttcgaagtag ctttggtgta aattttactt agattttcaa
    12661 ttgggtagtg gtaatgccac taagagctac tatggcaata gctatcatac aaacaggccc
    12721 caaaggcatt acttgtaaaa tcactgccat aattacagca ataaaaagcc caagaaaatg
    12781 ccaagaatta tcttccaaac ctacaaggag taggtatagg ccaaaacaca gctgcaatta
    12841 aaatacgcag caccaacaag ggaattttct ttctatccat tgtttatctt ttgatattgg
    12901 taatgaaatt ctagttaact aatattttaa taaatcttaa aattataatt tttaaataaa
    12961 tttttaattt ataaaaaagc tagcctgatt gaaaaataaa tagggaattt taaaatgaat
    13021 aaaacccttc cccagataac tgcggcacac actaaaatca agtgctctgc tgtgttccca
    13081 ccctgaagcg gtgcttaaaa atagcattgc acaggtctaa gaaaaggctc taaaattata
    13141 tcacaatata cttaaaaag
//
LOCUS       DAZAND010000049        12980 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.049, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000049 DAZAND010000000
VERSION     DAZAND010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12980
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.049"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..564)
                     /gene="pglA"
                     /locus_tag="ACHDOB_001047"
     CDS             complement(<1..564)
                     /gene="pglA"
                     /locus_tag="ACHDOB_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HFN3325972.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDLIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINNLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYIES"
     gene            complement(574..2715)
                     /gene="pglB"
                     /locus_tag="ACHDOB_001048"
     CDS             complement(574..2715)
                     /gene="pglB"
                     /locus_tag="ACHDOB_001048"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HFN3325973.1"
                     /translation="MLKKEYLKNPYLVLFAMIILAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSALTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPTILLANEYKRPLMGFVAALLASIANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDLSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAIMVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFALSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKTDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            complement(2719..3816)
                     /gene="pglJ"
                     /locus_tag="ACHDOB_001049"
     CDS             complement(2719..3816)
                     /gene="pglJ"
                     /locus_tag="ACHDOB_001049"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HFN3325974.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYAKNNFNSLANKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSINPKKCEILYNAIDLENIEQKALEDVALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            complement(3804..4733)
                     /gene="pglI"
                     /locus_tag="ACHDOB_001050"
     CDS             complement(3804..4733)
                     /gene="pglI"
                     /locus_tag="ACHDOB_001050"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HFN3325975.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAHR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            complement(4726..5805)
                     /gene="pglH"
                     /locus_tag="ACHDOB_001051"
     CDS             complement(4726..5805)
                     /gene="pglH"
                     /locus_tag="ACHDOB_001051"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HFN3325976.1"
                     /translation="MMKISFIIATLNSGGAERVLVTLANALCKEHEVSIIKFHTGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     LANIGLKTPLIISEHSNEAYLKPKTWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     KLLLNPCHFSDEIPFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGELRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVGCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISNIKEEWLKLIVEVKNA"
     gene            complement(5802..7496)
                     /gene="pglK"
                     /locus_tag="ACHDOB_001052"
     CDS             complement(5802..7496)
                     /gene="pglK"
                     /locus_tag="ACHDOB_001052"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HFN3325977.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFVSFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGLRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLNIIYQNLRQE
                     EENLGEGKLSFNQELKICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDKQELNASNAKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNKVIKQANLEHFIKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            complement(7490..8476)
                     /gene="galE"
                     /locus_tag="ACHDOB_001053"
     CDS             complement(7490..8476)
                     /gene="galE"
                     /locus_tag="ACHDOB_001053"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HFN3325978.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRTFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRNKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLSALDYLKENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLGLICKSAFDWEKQC"
     gene            complement(8535..9329)
                     /locus_tag="ACHDOB_001054"
     CDS             complement(8535..9329)
                     /locus_tag="ACHDOB_001054"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HFN3325979.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIANFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFCENELEKIHEYCESDVLNTYMLFLKYELI
                     KANVSEEDYIDFLSYMRDFLRAKKSDRSYTEVFAKACESEISKVQS"
     gene            9395..10423
                     /gene="waaC"
                     /locus_tag="ACHDOB_001055"
     CDS             9395..10423
                     /gene="waaC"
                     /locus_tag="ACHDOB_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HFN3325980.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQAKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKMMDLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNTKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            10413..11291
                     /gene="htrB"
                     /locus_tag="ACHDOB_001056"
     CDS             10413..11291
                     /gene="htrB"
                     /locus_tag="ACHDOB_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HFN3325981.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARITFYLNKK
                     HRKIIDTNLQICFPQYTQKERDKLSLKIYENFTQFGIDCLQNQNTTKEKILNKVNFIN
                     ENFLIDALALKRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKERALGILTDQDCVENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKAKDSQNANLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNQGIYS"
     gene            11288..11989
                     /locus_tag="ACHDOB_001057"
     CDS             11288..11989
                     /locus_tag="ACHDOB_001057"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFN3325982.1"
                     /translation="MNISIVILTFNSQKYLQEVLQSVNFANEIILIDSGSTDDSLIIA
                     KAFKNIKIFHQDWLGFGKQKQFGVEKATNDWIFVLDSDEVFTEELKEEVLQIIKNPSF
                     KAYKVARLNFFFGEAITKMGLYPDYNIRLFHKKYAKFNEKEVHESIICQEKIGKLKHH
                     FLHYAYENIEQFIDKQNKYSSLNPKKNNLLKALINPYWTFFKLYFVKLGFLEGKRGFI
                     IAKLYAQYTFWKYIK"
     gene            12000..12878
                     /gene="rfbA"
                     /locus_tag="ACHDOB_001058"
     CDS             12000..12878
                     /gene="rfbA"
                     /locus_tag="ACHDOB_001058"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008879 - glucose-1-phosphate
                     thymidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HFN3325983.1"
                     /translation="MKGIILAGGSGTRLYPSTLTLCKQLLPIYDKPMIYYPMSVLMLA
                     KIKEVLIISTPKDIDRFKELFKDGSFLGMQIQYKIQERPEGLAQGLILAQDFIQNDDI
                     ALILGDNIFYGQGFSDILENAKDDLKKGFASIFSYHVKDPERFGVVEMDQNGNVLSLE
                     EKPKNPKSNYVATGLYFYNNDAIDIAKNIKPSARGELEITDVNIEYLRLNKLKSQHLG
                     RGFAWIDTGTHDSLIEASSFVQTIELRQGYKIACLEEIAYNNNWIDNETLEKRALLLS
                     KSNYGQYLYKILSQGK"
     gene            12878..>12980
                     /locus_tag="ACHDOB_001059"
     CDS             12878..>12980
                     /locus_tag="ACHDOB_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HFN3325984.1"
                     /translation="MYILVTGGAGFIGSNFLLYFFEKNPDAKIINLDF"
BASE COUNT         4836 a         2204 c         1621 g         4319 t
ORIGIN      
        1 cgattctata taaataggaa aaaatttttt taaattgatc cctacggatt ttatcacaca
       61 aattttattt tccttaagtc ctaaattccg cataaactcg gcattacttt cattgacaaa
      121 aataaattgg tgtgcaaatt taaaacttaa tttataaaga ttattaataa caaaacgtac
      181 taaatttgcc ttaaaacctt gatctatata aaaagatccc aagccttcta ccaaagcaaa
      241 acgataagga atttttgccc attttgccgc taaaattcca aaggtattgc ttttgtgtgc
      301 cgcactttga ataagatcaa gatttaaatt ttttaaaacc ttagcaagat aaaaaaaatt
      361 ctttaaaact acaaaaggat ttaaactagc tcttgaaaac tcataaacaa ttacttttaa
      421 accaagatct ctaagttttt gcgtgtattc atcttgcggc actataacaa aaacttcatc
      481 ttttctatct tttaatgctt ttataatagg cattctaaaa tgataaatac ttgctcctgc
      541 atgtgataaa aatcctattc tcattttcaa cccttaaatt ttaagtttaa aaaccttagc
      601 atctctagaa ttaatcacca agtcaaataa attcttatca taatttccta aaaaaaacat
      661 ttgcacataa gcactattaa acatggtttt atccattaaa ataaattgtg cgtaaggaat
      721 agcactatcc tttaaataaa aaatataaaa ctgagcctta tcatcaattg gagtgatttt
      781 gtattcacct tgtttaatag aattaatctc tacgatacta tttacagaaa ccacattatc
      841 acctatttta aaacttctaa aatcatcgct taaaaccact ccgttgctaa gataaatttc
      901 tccattttta acatcaagtg gataagctgt gctaaaggta aaaggtttat ccaaaactcc
      961 tgtatctaaa ttaataaaag aaaaactagc caccgtagaa aaaatcaaag acattctagc
     1021 gggcatataa agataaatat cacgagtttt tggcgtatcg attttaaaat caggttttga
     1081 taatgaagct agaaacaaat ccacattgct ttgattataa tctttcatca tggcttgcaa
     1141 aatgtctgtt tttaaaatat cattttgcgg agcataaaag cttttttctg tatattctac
     1201 actaagtctt gccatattag ctgcagcttg ttcatctttg cttaaagcaa aagaagggaa
     1261 aaaattatcc ttacctaaat gctttccacc atctactaaa gttttcacat cgctataata
     1321 acgcacagga taaccataat cccaccaagt taccacataa tcttctctat tggctatatt
     1381 ttttaattga tttaataatg atgcttcatt ttgagaaaaa actgttggcg ctttatagtt
     1441 gtaaatatgg ataaatactg gagctaaagt caaaatagtt gcaaaaacaa tacaaacatt
     1501 tgaagttaat tggctatatt ttttaaccat tatagcctta aactcgctca ataaaaaacc
     1561 aaatcctaag gccattacag gtacagaata aatggtaaat ctaagccccc cttttaaggc
     1621 taaaaaccca agcaccaata taggtaaagc cataatcata cttttatgtt ttctcaaaag
     1681 ccatacaaaa ccaaacaaag aaaacaaaaa aacaatttca ctaccactaa ttcttcgcat
     1741 aaattcgcta agatctacat tttcaacttc ttgtatggtt tgattgacat taaaatacat
     1801 aaagccctgc gttaaattcg cactttcatc acttctaaaa atataaaatt taagctgata
     1861 aagtatagga tcaaccccac cacttaaaat caaaaatatc aaagttgcac tacctaaaat
     1921 tcctataatc ataaaattta agcgtttttg ctctaaggcg aataaagcaa aaagtattac
     1981 tataatggca ctttgataaa accatgctat atttgaaaga gtaagagaag acaaaatcac
     2041 agctatataa aaaatctttt cttttctatg aaaaataagt gtataaatta aaaaaagtcc
     2101 aattaaagct acatttaaag tataacttga aggataccac caaagataaa ttcctataaa
     2161 taacggcaag gcaatcaatg aaaaaaagtc tttttttaaa atcattctta ccataaaaaa
     2221 taaaataaac ataggcaaaa caattaccag catatccgta tcataatacc cactcatagt
     2281 gcgattataa taactgtttg ctatacttgc taaaagagca gctacaaagc ccattaaagg
     2341 acgtttgtat tcgttagcta gcaaaatagt aggaatcacc accaaagaag ataaaaaagt
     2401 actcatatat aaaatgatac tttcaaaaga aaaaggtgtg attttataaa gccaataagt
     2461 aagcgcggat aaagaagatc cataataact caaatcatta ggctgatgaa aacctgctat
     2521 catatctctt gcgccctcag caaaagcata gccatcattt gaaatgatca ttaactgatt
     2581 attgaaaaaa tactcattaa actcacttgc ccaccaaacc caataaaacc tgcaaaatac
     2641 actaaaaaca taagctaata taatcatcgc aaacaaaact aaataagggt tttttaaata
     2701 ctcttttttc aacatctttt atcctaataa atatttcaaa gcatcgcgtg caatttttac
     2761 tttatcaaaa gctttagccc tagttttagc cttattttta tacgcttttc ttaatttatc
     2821 gtcttcaagc atagtcttta aaccctgaaa catggagttt tcattatcta cttctactaa
     2881 aagtccaaat tcatcatcgc caaaaagctc tcttgcgcca cttttatgat cagtgcaaac
     2941 caccgcacaa gaacaagcta agctttcaat taaaacattt gaaaagcctt caaatacaga
     3001 agcaaaagca aaaaattcgc atttagccat gtatttataa ggattattat caaatcctaa
     3061 aagcaaaacc ttttcttcta aatttaactc tttaatcaaa gctaaaagct catctttaag
     3121 cacaccttca cctaaaatca caagctttaa atctgttttc aatcttgcat aagcacgaat
     3181 taataaagca tgatttttac ctttatcaag cctgcctaca cttaaaataa atttatcttt
     3241 taaagctaca tcttcaagag ctttttgctc tatattttct aaatcgatgg cattgtataa
     3301 aatttcacat ttttttggat ttatactaaa attttgcact aaatcttcta aatttccctt
     3361 agaattaggc aagattaaat cagcttttgg gtaaagcaaa gaaattaaaa atttatttgc
     3421 caaagaatta aaattatttt tcgcatacat cacacttggc gtagtgcatt cattgatcac
     3481 aaggcgagtt ttgtttccaa acattcttgc cattaaggct atataattag gtcgatttaa
     3541 aaaaacaaat tctgtatcaa tgcctaaatt tctgcaaagt tttttatatt ttaaagccaa
     3601 aaaaggtagt tttaaaaatt tcaaaatagg attttcacta ggttttgaac attctaaaaa
     3661 atgaatttga cactctggaa tttcataaga aattttatca ttcattaaaa tcaaatgcac
     3721 ttcaaatttc aaacttaaaa taggcaataa agtcgccaca actctttcag caccaccact
     3781 tcctaaagaa taaataaaaa tgcctaattt ttgcataaag ccacccgaat ttttgataat
     3841 ttttcaatca tattatttgg aattatactt aaaatgagta atatcaaagc aggagcgttg
     3901 atttttatac tcaggctttt aaacaaacac ttataaagag ctttataatt ttttgcaagt
     3961 tttgcataat aagctgccat tttataataa ctcgcacaag tttttttata atctttatcc
     4021 ttactcattc taagttcatt ttctaaaatt ttagcaagct ctaaatatcc caaatacacc
     4081 ctatgagcat ttttactcgc ccctaaagtc acgctatctt gcctaaaaat cctataaatc
     4141 ctaaaagcct tatggatata aaaacttttt tccttgtata aatttaccca aagcgtggct
     4201 tcattgccat aaaattcttc attaaaacgc ttgttttcaa gtagagattt tttaaaaaca
     4261 gaaaaaaact ctccgctaaa tttagccatt aaaaaatctt ttttagaaat ttcactatct
     4321 ttttccaagc ccttaccgct aaattccttg cttaaatttc cttctttttc tatcaaacaa
     4381 tttccaaaaa catgagcata accctcattt gctttttgca tcaaggtact taaagcccca
     4441 gataaaagct catcatcatc atctaaaaaa gttacaaact cgccacttgc ttgatctaag
     4501 ccattgtttt tattgccatt tgggccttgt ttgtaatttt gatttaaaaa atacttaatg
     4561 cgatcatcat ctttttgtaa attttgcacc acacttttag tatcatcact agaattatca
     4621 tcgcttacaa tgatttctaa atctttaaaa tcttgatttt gtatgctttt aatagccttt
     4681 tctaacaaaa cttgacgatt aaaagttggc actataacag aaagtttagg catttttaac
     4741 ctcgactata agcttaagcc attcttcttt gatgttagaa atttcaaagt ctttacacct
     4801 ttgtttggca ttatttacaa gttcttttct aaaattttca tcatttaaaa caagttcaag
     4861 ttttttagca agtgctattt catcatcaca acctaccaaa agcccatcat gattatcttt
     4921 gattaaatcc ttagcaccat tataataaga acttgaaatt ctacaaacct caaaatacaa
     4981 actttcaatt aaaaccgttg gcaaaccctc tacaaaagaa caaaggcaaa gcacttttgc
     5041 tttttcataa agagccttga cattttcaac gcgtcctaaa aaatcaactt ttattcctaa
     5101 agattttacc ttgtattcaa gttcttgcct taactctcca tctcctgcta taacaaattt
     5161 ataattttct tgcaaatttt tatccaaatg tgctatagct tttaaaaaca ttacagggtt
     5221 tttgttgtga tctaaacgcc ctataaaaag aaccaaattt tctttttcaa aactagaatc
     5281 aaaaggaatt tcatcgctaa aatgacaagg gtttaataaa agcttaaccc tttttacaaa
     5341 tctttcataa tacaccttat cactgcttcc aagcacactt aaagcatcac aaaaaggata
     5401 gcttaccctt cttaaaaaac gccaagtttt aggttttaaa tacgcttcat tactatgctc
     5461 gctaatgatg agtggagttt taagtcctat attagctaga atacaagcaa tattagttgt
     5521 atccaaaaaa gaaataaaaa catcagcctt actttctttt aaagcctttc ttaaggcaaa
     5581 aaatttctta aaacgacttg cgattttatg ataaagcgtg tcaaatctaa attgttctaa
     5641 acttgtaact ttaacttcat tttcaagctt ataaaaagat tctcctgtat gaaatttaat
     5701 aatacttact tcatgctctt tgcaaagcgc attagctaag gttactaaaa cacgctcagc
     5761 gcctcctgaa tttaaagttg cgataataaa gcttattttc atcatttctc ctctttaagc
     5821 ttaccgtgtt ctaaacgata aaccttatca cattgcgtta tcgtagaaag gcgatgtgcg
     5881 ataataatca tggttttatc tttagaaatt ttataaattt catccatgat ttttgcttca
     5941 ctttgagtat caagcgcaga agttgcttca tcaagcacta aaatttcagg ctctaaatac
     6001 aaagcccttg ctatagctat gcgttgtttt tgtcccccgc ttaaattact ccccccatcg
     6061 cctacttttg tctgaactcc ttgaggtaaa ttttttataa aatgctctaa atttgcttgt
     6121 ttgataacct tattaagttt ttcttcatca accgcatctc caaaagtgat atttttagct
     6181 atgctatcat taaaaagata gatattttgc gggatatagc ctattttttg gcgataattt
     6241 tttgcattac ttgcatttaa ttcttgctta tcaattaaaa tttgcccttc ttttggtttt
     6301 aaaagtccta tgataagatc tactaaggta ctttttccac aaccactctc ccctataaaa
     6361 gcgatttttt cacctttttt aatgtttaaa ttaagatttt taaataaata tttttttccc
     6421 tcataaccaa agctaagatt gcaaatttta agctcttgat taaaacttaa ttttccctcg
     6481 cccaaatttt cttcttcttg tcttaaattt tgataaataa tattcaaaga agaatgataa
     6541 taaagcaaat catgataact tgtgataata cgatttgcgc ttggcattaa gcgataaagc
     6601 gctaaaacaa aaatagaaat cgtggataaa atacctgaaa tatcactttc atttttcaaa
     6661 accaaaaata ccacgataaa aacaagcaca caaaagccta ttccttcaag ataaattcta
     6721 ggcaccgcag ctacgctttc attggtaata tttgctttag aaaaagcttc actttgtgct
     6781 ttaaaaagac ttaatactcc atcttctttg gttttaagct tgataaattt aaaattattt
     6841 aaatttgtat ttaaaatttc gaagaaattt ttcatcgctt cttcgcgtct tagtcctgct
     6901 tttttaatga tagggcttaa aattttcact aaaataaaag catttaacac cataaaaata
     6961 cttaaaaata aagtgatttt ataattaatc aaaagcatta aagcataaag caaaagcact
     7021 acaaaaattt cactcatcaa aagtaaaaat gatgaaatca tagtgcttag attataaact
     7081 tcccctgtaa tggactttaa aatttcagat tgattttttt gagtaaattt ttcataatta
     7141 atatttaaaa atttagaaaa aaccttataa gcgatcgcat gataacgtcc tttagaaaat
     7201 cttgccaaaa gatgaaaata atacgcattt aacaaagctc taaatacata aaaaacaata
     7261 agccccactc caaaataaac aatgatttca aaaacaggga tattaagata ttcttttagg
     7321 ctgattaaat atttattacg atcaaaataa gaaaaatcac tagccaaagt gataaaaggc
     7381 attaccaaag aaatcgcaaa agtttctata aaagaaacaa atactgaaaa aacaagcaag
     7441 aaaaataaaa aatttttatc ttccttgctt aaaataaaaa aaagtttttt tagcactgtt
     7501 tttcccaatc aaaagcagat ttacaaataa gccctaaatc atcatattta ggctgccaag
     7561 aagtaagatt tctgatttta cttgcatcag aaatcaatac actaggatca cccgcacggc
     7621 gtggggcaag ttctacttta aaatccactc cgctaacttt tttcatcgct tcaatcactt
     7681 cttttacgct aaaaccatgt ccataaccta cattaaaaac attgctttca ttctctttta
     7741 aataatccaa agccgataaa tgcgcacttg aaatatcatc cacatggata aaatctctta
     7801 tgcaagtgcc atcttttgta tcataatcat cgccaaatat gaaaagttta ttacgttttc
     7861 ctgcggcaca ttcagctgca acttttataa gcaaagtcgc ttttggatag cgttgtccta
     7921 aagtataatc catgcaagca cctgcaacat taaaatatct taaaatacaa tgcttaaatt
     7981 caggatttgc catacttgca tcacgcaaaa cctcttcgct cataagctta ctacgcccat
     8041 aaggattaat aggtgctaaa ggacttgttt cgctcacaac gggagtttgt ggttcgccat
     8101 aagtggctgc cgttgaagaa aatataaatt tattcactcc agtttgcaaa caagtttcga
     8161 tgagatttgt cgtattaaca gtgttattca tataatactt taaagggttt tgcatacttt
     8221 caaaaacttc aatgctcgct gcaaaatgca caatagcgtc aaatttttct ctctcaaaca
     8281 atgcttttac gccttgaaaa tcacttaaat cttgttcaaa aaatttaaaa gttcttattt
     8341 tttgcaaatc ttctattgcg attttagaac ccttagaaag attatctaaa acacaaattt
     8401 catgatctgt ttttaaaaat tgtcttaaag tatgagaacc tatataacct gcaccaccgc
     8461 taataagaat tttcatcatc attccttttt ctaaaaaata tcaaaaataa attttaatat
     8521 attttcttaa atacttaaga ttgaactttt gaaatttcac tctcacaagc ttttgcaaaa
     8581 acttctgtat aggaacgatc tgattttttt gcacgcaaaa aatctctcat ataagaaaga
     8641 aaatcaatat aatcttcttc actaacatta gctttaataa gttcatattt taaaaaaagc
     8701 atataagtat ttaaaacatc actttcacaa tattcgtgaa ttttttcaag ttcattttca
     8761 caaaaaagtt tcatcacctc atcgccatgc acatcatatt ttcctggtaa acccaccata
     8821 gaacaaagtg tatcaagctt tattccacgc ccattagatc ctaaggattc taataaatcg
     8881 caatgtttta attctgaaaa tcttgtttta taattattcc atttatcgct ttgagtatct
     8941 aaataagttg ctgcttttaa attgtatttt aaagccctta aaacaagaac aggcatatcg
     9001 aaatttttac cattaaagct gactaatttt ggctcataat tttctataaa attaaaaaaa
     9061 ttagcaatca tttctttttc attttgccca tcaattttat ttactttgat aaattttcca
     9121 aaattatcac ttaaaaccgc acaaatactg atgattttat gataaggcaa aggcaaaaac
     9181 tcactcccac tttgttcttt ttgccactga agtgctttta aacttacctc caaatcactt
     9241 ccttcaaaac ccaaagtttt gcgaataagc tcaacatctg gtacactctc gcaatcaaaa
     9301 acacaaatat aaccttcatt ttttgccatt tttaaccttt ttttaaataa tttcgctaaa
     9361 atcatagcaa aaattttaaa atattaggct tttaatgaaa atagcaattg ttcgtttatc
     9421 agcacttggt gatattatcc aaagtgccgt ggttttgcaa tttatcaaaa attttaaaaa
     9481 agatatagaa attcattggt ttgtagatga aaaatttgaa ggcatactta aaaaccatcc
     9541 tttaatagac aaactctatg ccctaccctt aaaagacaaa aaaattttaa aaagcctaaa
     9601 aattcttctt aaagcaagaa aaaacaacta taatgcagta atagatctac aagggcttat
     9661 aaaatctgct attgtaagtc gaattttaag tagaaataat tttggttttg ataaaaacag
     9721 ccttaaagaa agttttgctc ataatttcta caaccaaaaa cttgagttag attacaatga
     9781 aaatgtattt gtaagatact taagtcttac ctcctttatg ttaaatactg attttaatgt
     9841 caaaaattta gcctttaaac aagatatttt tagcgtagat gaaaatttaa aacaactctt
     9901 aaacaataaa ctcaagctcg acaaaaacga aaaaaacata ctcatacacg taggttcaag
     9961 tgtagaaaat aaaatctatc ctaaaaccaa acttgctata ctttgcaaac ttttaatcaa
    10021 tgaatttcaa caagcaaaaa tttggctcgc ttggggaaat gtaaaagaat acgaatttgc
    10081 taaagaggtt ttaaatctta gtggtattga tgaaacacat atagaattag cgccaaaatt
    10141 caatcttgaa gaactaatgg cttttacaaa aatgatggat cttatcatag gaaatgatag
    10201 cggcccaaca catttggctt ttgctttaaa taaggcatct attacgattt ttggtgcaac
    10261 accaagctac cgcaatgctt ttcaaactca tatcaataaa atcattgatg caggtaaaaa
    10321 aatccaaaat accaagcata tcgataaaag tgatttttgt atcacgcgta tagaagaaga
    10381 agatatcttc aaacttgcca aaggcttact taatgaaaaa tagtgataga atatatctta
    10441 gtctttatta tattttgaaa ttttttgtta cttttatgcc tgagtgtatc ttgcattttt
    10501 tagctttgat tgtagcaaga atcacttttt atcttaacaa aaaacatcgc aagatcatcg
    10561 atacaaattt gcaaatctgc ttccctcaat acactcaaaa agaacgcgat aaactatctt
    10621 tgaaaattta tgaaaatttt actcaatttg gaattgattg tttacaaaat caaaacacca
    10681 ccaaagaaaa aattctcaat aaagtaaatt ttatcaatga aaattttctt atagacgctc
    10741 tagctttaaa gcgtcctatt atcttcacaa ctgcacacta tggaaactgg gaaattttaa
    10801 gccttgctta tgcagctaaa tatggtgcga tttccatagt gggaaaaaag ttaaaaagtg
    10861 aaattatgta tgaaatttta agccaaagtc gtactcaatt tgacatagag cttattgaca
    10921 aaaaaggcgg tataagacaa atgctaagcg ctctaaaaaa ggagcgagct ttgggaattt
    10981 taactgatca agactgcgta gaaaacgaaa gcgtaagatt aaaatttttt aacaaagaag
    11041 tgaattatca aatgggagca agccttatcg cacaaagaag caatgctttg atcatccctg
    11101 tttatgccta taaagaagat ggtaaatttt gcatagagtt ttttaaagca aaagattctc
    11161 aaaatgcaaa cttagaagaa ctgacacttt atcaagcaca aagttgcgaa gaaatgatta
    11221 aaaaaagacc ttgggaatac ttttttttcc atagacgctt tgcaagttat aatcaaggaa
    11281 tatactcatg aatatttcaa tagtaatact aacttttaat agccaaaaat atcttcaaga
    11341 agtattgcaa agtgttaatt ttgccaatga aattatttta atagatagcg gaagcacaga
    11401 tgatagtcta ataatagcaa aagcttttaa aaacatcaaa atttttcatc aagattggct
    11461 tggttttgga aagcaaaaac aatttggagt tgaaaaagca actaatgatt ggatatttgt
    11521 tttagatagt gatgaagttt ttactgaaga attaaaagag gaagtattgc aaataattaa
    11581 aaatccatca tttaaagcat acaaagtagc aagattaaat tttttctttg gagaagcaat
    11641 aacaaaaatg gggctatatc ctgattataa cataagacta tttcataaaa aatatgccaa
    11701 atttaatgaa aaagaagttc acgaaagcat aatctgtcaa gaaaaaatag ggaaattaaa
    11761 acatcatttt ttacattatg cttatgaaaa tatcgagcaa tttatagata aacaaaacaa
    11821 atactcaagt ctaaatccta aaaaaaataa ccttcttaaa gctttaataa atccttattg
    11881 gacttttttt aaactttatt ttgtaaaatt aggtttttta gaaggcaaaa gaggttttat
    11941 catagcaaag ctttatgcac aatatacttt ttggaaatat attaaatagg agtgcaacaa
    12001 tgaaaggcat tattttagct ggaggtagtg gaactagact ttatcctagc acattaactt
    12061 tatgcaagca acttttacct atatacgata aaccaatgat ttattatcct atgtctgttt
    12121 taatgcttgc aaaaattaaa gaagttttga ttatttctac tccaaaagat attgatagat
    12181 ttaaagagct attcaaagat ggttcttttc ttggaatgca aattcagtat aaaattcaag
    12241 agcgtccaga aggtttagcg caaggactta ttttggcgca agattttatt caaaatgatg
    12301 atattgcatt aattttagga gataatattt tttacggaca aggctttagt gatattttgg
    12361 aaaatgcaaa agatgactta aaaaaagggt ttgctagtat tttttcttat catgtaaaag
    12421 atccagaaag atttggagtg gtagaaatgg atcaaaatgg aaatgtttta agcctagaag
    12481 aaaaacccaa aaatccaaaa agcaactatg tggcaactgg tttatatttt tataataatg
    12541 acgctataga tattgcaaaa aatataaaac caagtgcaag aggagaactt gaaataacag
    12601 atgtaaatat agaatattta aggttaaata agctaaaatc acaacattta ggaagaggtt
    12661 ttgcttggat tgacacagga actcacgata gtcttataga agctagttcg tttgtgcaaa
    12721 ccatagaatt aaggcagggt tataagattg cctgcttaga agaaatagcc tacaataaca
    12781 actggataga taatgaaacc ctagaaaaaa gagcattgtt actttcaaaa agtaattatg
    12841 gtcaatattt atataaaata cttagtcaag gaaaataatg tatattttag ttactggcgg
    12901 agctggtttt ataggtagta attttttatt atattttttt gagaaaaatc cagatgctaa
    12961 aattataaat ttagattttt
//
LOCUS       DAZAND010000050        12756 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.050, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000050 DAZAND010000000
VERSION     DAZAND010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12756
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.050"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..139)
                     /locus_tag="ACHDOB_001060"
     CDS             complement(<1..139)
                     /locus_tag="ACHDOB_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HFN3325985.1"
                     /translation="MGLKAYLDGILGEDKACKFLKKQGFEILKRNFHSKFGEIDIIAK
                     KD"
     gene            complement(139..1386)
                     /gene="hom"
                     /locus_tag="ACHDOB_001061"
     CDS             complement(139..1386)
                     /gene="hom"
                     /locus_tag="ACHDOB_001061"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HFN3325986.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVEEILNADVDVFVELMGGVDEAFKIVNEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFEQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYELLSKDEIYT
                     KYYLRVKVEDKIGVLSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            complement(1390..2592)
                     /locus_tag="ACHDOB_001062"
     CDS             complement(1390..2592)
                     /locus_tag="ACHDOB_001062"
                     /EC_number="2.6.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HFN3325987.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            complement(2604..3410)
                     /locus_tag="ACHDOB_001063"
     CDS             complement(2604..3410)
                     /locus_tag="ACHDOB_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325988.1"
                     /translation="MVKKIIILTLWVNISFAISSLELAKNLVNNSSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLRLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYINNIKRIRAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            complement(3404..4342)
                     /locus_tag="ACHDOB_001064"
     CDS             complement(3404..4342)
                     /locus_tag="ACHDOB_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325989.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSSNAWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLGGNNVVVIDNNK
                     AQETNQTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPAGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            complement(4335..5018)
                     /gene="rlmB"
                     /locus_tag="ACHDOB_001065"
     CDS             complement(4335..5018)
                     /gene="rlmB"
                     /locus_tag="ACHDOB_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HFN3325990.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKTTFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(5032..5856)
                     /gene="rsmI"
                     /locus_tag="ACHDOB_001066"
     CDS             complement(5032..5856)
                     /gene="rsmI"
                     /locus_tag="ACHDOB_001066"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HFN3325991.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELPLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            complement(5859..6059)
                     /gene="rpmE"
                     /locus_tag="ACHDOB_001067"
     CDS             complement(5859..6059)
                     /gene="rpmE"
                     /locus_tag="ACHDOB_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HFN3325992.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(6138..6794)
                     /locus_tag="ACHDOB_001068"
     CDS             complement(6138..6794)
                     /locus_tag="ACHDOB_001068"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HFN3325993.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(6796..7203)
                     /locus_tag="ACHDOB_001069"
     CDS             complement(6796..7203)
                     /locus_tag="ACHDOB_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325994.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(7203..7628)
                     /locus_tag="ACHDOB_001070"
     CDS             complement(7203..7628)
                     /locus_tag="ACHDOB_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFN3325995.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSLDDEHEANPTIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLGNKIFIQKIKMIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(7628..8209)
                     /locus_tag="ACHDOB_001071"
     CDS             complement(7628..8209)
                     /locus_tag="ACHDOB_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-pyruvoyl tetrahydropterin synthase family
                     protein"
                     /protein_id="HFN3325996.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMSKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(8206..8949)
                     /locus_tag="ACHDOB_001072"
     CDS             complement(8206..8949)
                     /locus_tag="ACHDOB_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HFN3325997.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENP
                     EFIKFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(8952..9914)
                     /gene="moaA"
                     /locus_tag="ACHDOB_001073"
     CDS             complement(8952..9914)
                     /gene="moaA"
                     /locus_tag="ACHDOB_001073"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HFN3325998.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(9927..10442)
                     /locus_tag="ACHDOB_001074"
     CDS             complement(9927..10442)
                     /locus_tag="ACHDOB_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3325999.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(10439..10936)
                     /locus_tag="ACHDOB_001075"
     CDS             complement(10439..10936)
                     /locus_tag="ACHDOB_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326000.1"
                     /translation="MELTLFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(10927..11811)
                     /gene="mqnP"
                     /locus_tag="ACHDOB_001076"
     CDS             complement(10927..11811)
                     /gene="mqnP"
                     /locus_tag="ACHDOB_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis prenyltransferase MqnP"
                     /protein_id="HFN3326001.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLFVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKVGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGIALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            11882..12751
                     /gene="miaA"
                     /locus_tag="ACHDOB_001077"
     CDS             11882..12751
                     /gene="miaA"
                     /locus_tag="ACHDOB_001077"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HFN3326002.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFDAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALAILRMKFSIEK"
BASE COUNT         4310 a         2033 c         1599 g         4814 t
ORIGIN      
        1 catctttttt ggctattata tcgatttctc caaatttaga atggaaattt ctttttaaaa
       61 tttcaaagcc ttgttttttt aaaaatttac aagccttatc ttcacctaaa attccatcta
      121 aataagcttt taaacccatt attctatacg catcataaaa ggtttggttt ttataaaatc
      181 ttgtttgcgt aaaatttcaa gcaaattttg tatgcttttt tcataagtta aatgtgtagt
      241 aaaaaacaaa gtactgtaat tttcatcatt ttttttaggt ttttgtaaaa aactatcgat
      301 agaaatatta ttttcactca tcaattgtgt gattttagat aaaaccccta ttttatcttc
      361 aactttcacc cttaaataat attttgtata aatttcatct ttgcttaaaa gctcgtattc
      421 taaagtattc acaaaaccaa gcattggtgc ttttacctga tctcttgcta tatccataag
      481 atctgaaatc acagcacttg cagtggcctc tcctcctgct cctgctccat aatacaaact
      541 ttcacccaac aaatctccat taatgcttat agcattcatc actccatcaa cttttgcaag
      601 cattttttct ttatctatca tagtaggatg cactcttaat tctactttat tttcacgcac
      661 cttagctata cctaaaagtt ttatggtaaa ttcaaactca ttagcaaaat acatatcttc
      721 aggtgcaatt tcactaatac cctcgatcaa aatatcttca ggtttagctt taagattata
      781 agcgatactt gataaaacaa gtagtttatg tgctgcatct tgcccttcta tgtcaaaagt
      841 tggatcagcc tctgcataac ctaaattttg agctatttgt aaggcttgtt caaaactcat
      901 atttttttga ctcatagaac ttaaaatata attactcgta ccatttaaaa tcccttttat
      961 agccaaaata ttatttgcac ttaaaccttc ttttaaaacc ttgataatag gaattcctcc
     1021 agctacactt gcttcataac caaaagctaa atttttagcc aaattttcaa gctcataacg
     1081 atgataagca agcatagctt tatttgcagt aacaacagct tttttctttt ttaaaatttc
     1141 attcactatt ttaaaagctt catccacccc acccattaat tctacaaaaa catctacatc
     1201 agcatttaaa atttcttcaa cactgtgagt aattggaatt aaagcatttt ttttaggact
     1261 tctagcaaga gcgatcacag gagtgatact ttgtccacat cttgcacgaa tgagtttatc
     1321 attttctaaa agaaatttaa ccaccgcact tccaacagtg ccataaccaa gaatcgctac
     1381 tttcataact tattctttta aatatttttt gatattgcgt gcagcttggc gtatgcgatt
     1441 ttcattttca attaaagcaa ttcttacata ctcatcacct gcttcgccaa aacctacccc
     1501 aggacttact gcaacactag cacgttgtaa aagttgcttt gaaaattcta aactttttaa
     1561 atgtcttttg ctttcaggga gttttgccca aacaaacata cttgctcttg gtttttgaag
     1621 tttccagcct gcattttcaa aagcttcaag taaaatgtgc attcttttat cataagttgc
     1681 acggatttca tccacacaag tttgatctcc atctaaagct atggtagctg ctacttgaat
     1741 aggtgtgtac ataccataat caaaccaaga ttttattttt ttaagcgcac tgactaagcg
     1801 tttatttcct actacaaaac ctacacgcca gcctgccata ttgtaagatt ttgaaagagt
     1861 gtaagtttct accgctacat cttttgcgcc ttcaatttcc aaaatagaag gagttttata
     1921 gtcatcataa gttaaatctg cataagcaat atctgaaata atataaaatc tttctttttt
     1981 tgccgttgct atcaatcttt cataaaaact tttctcacaa gttactgttg ttggattatg
     2041 cgggaaatta acaacgacat attttggacg cgggatgctt tcatttaaag ttttatgcaa
     2101 attttcaaaa aattgatttt catcaagctc aaatttttca ttataagcta aaggcatttt
     2161 tgctacatta cctcctgcta taataaaagc ttgagtatgt ataggataag caggagttgg
     2221 tacaatagca acatctccag gatttataat cgctcttgca agatttacaa aaccctcttt
     2281 tgaacccatg gtagctacaa cttcattttc aggatctaga ttaacattat attttctttt
     2341 ataccaatta caaattgcta agcgaagttt ataaatcccc atggaagtag aatatcccga
     2401 ggttttatct ttgttagcac tttcacaaag tttatctata atgtgttgtg gagttttacc
     2461 atcgggattt cccattgaaa agtcgatgat atcctctcca gcacgtcttg ctgccatttt
     2521 tatcgcattt acctctgcga aaacataatt tggaagtctt tctatggtat taaaacggat
     2581 ttcatcaaac atttcttaat cctttatttt ttaagtgtga tttttaaacc cctacgtata
     2641 ttatctaaac tatacatatc gcttacaata gcatatatag caccatttgg aataagttct
     2701 gaaaaatgat tatttttatt ttcgcttttt actgctttaa ttagatttag atttttatct
     2761 aaaaagaaga ttttaggaaa ccaattgtct aaatcatttg catcaataat caaatttgta
     2821 gcatttttta aatcaagcac atagtcttta aggggctttt ctaatgattt tggagtattt
     2881 aaattaacat ttgtattggt ttttaataca gcattggaaa aatttaaatc atattcatag
     2941 tcatatgccc taatacgctt aatattattt atatagacag aattttcttt taagagattg
     3001 taaagcgttc caggatctaa aacatattga gattctactt gtatggtata gtcaatattt
     3061 ccttctctta aaatcaaatc tgtagggata aaatatatat atccagcatc tgttaaaaca
     3121 tcggataaaa ttttaaaaaa cataacttca tcagcttttg ctttaaaatt tagtcttaga
     3181 ctttgaggat ttgatagtgt taaggcaatt aaagaattgg tttttaatat ttgagatatt
     3241 tttgcaatat cacaatttcc attattatct atgtaagaat tatttgaaaa taataattct
     3301 agttgagaat ttttgctaga attgtttact aaattttttg ctaattcaag acttgagatt
     3361 gcaaaagata tattaaccca aagagtaaga ataataattt tttttaccat tctttacctt
     3421 tatttaattt tacaaattca gcagctgaaa tacttgtaat ttttccatct ttaatcaaga
     3481 aacgttttga aattcctgca ggaaattttt gttctttatt ttcttgatca aacattgtta
     3541 aagctgcagc ccctgttaaa attaactgat ctttatctaa agaaatatta aaatcttttt
     3601 ctttaacaaa gcttgttttt ttaagacttt ttaaatctat taaacctatc caaatcttgg
     3661 tagaggtttt aaaatgtgct tcttttaaag aatcagtttt tggtgtattt gtgtcttctt
     3721 ggatttgggt atttttttct tcatcgagta gagttgtgtt attttcactg atattatttt
     3781 ctatgcttat gtttttatca ttttcttgta atgagatgtt ttggcttggt aaaacgctct
     3841 ctgtttgatt tgtttcttgt gctttattgt tgtctataac aacaacattg tttccaccta
     3901 aagattttaa attttcttgt gcttgtccta tgatatctat aactgttgcg ctagtattat
     3961 tttgttcatc tttgaaaaaa gttttaagtg tatcaaaata ataaattcca cttcctataa
     4021 tcactaaaac aataagaaca atcaaaaaag gccaagcgtt agaggatttt tgactataag
     4081 catctagttt tggggttatc atttttgatt ttgtttgtgg agtaggattg ttttcgttaa
     4141 gataagcttc atactcttcg ttaaaatcac taaagtcgag ttcgtattct ctgctcaaaa
     4201 ttttaacaaa acctttaaca ttaaaacgac ttaaaacagc aaaattcttt tctactaaag
     4261 cttcaagaaa atcaagttca atttgcgttt ttgctgcaac ttcttttaaa tttaattctt
     4321 gtattttttt ccaattaagc atttaacatc ctatcacaaa gtattgcaaa agcagcgctg
     4381 acattaagac tatcaaaatt atttttcatc gcaatgccca cacattcatc gcattttttt
     4441 acaattttag agcttaaacc aaaaccctca ctacccaaaa ctaaaacttt tttaccattg
     4501 cttattttta cactgtgaat ttcttttccc gagccatcac tcgcataaaa ataaaaacct
     4561 acttgtttta gttcatttat tacacttaaa gcatcgttgc ttatcacaat aggtaaatca
     4621 agagccgctc cgctgcttgt gcgaattact ccttccatgg ctaatttttc accaataaaa
     4681 attaaagccc caacccctaa agcataagct gtacgcgtga tagcccctat atttcctaca
     4741 tcgctaattc cataaagcat aacaataaaa tcattttttt tgatctcatt taaattcgca
     4801 aaagaacttt ctttaatatc tagcaaaaaa ccttgatgat ttccaccttt cgcataagct
     4861 tgagcagttt taaaatcaag ttttttgatt ttaaaacctg attttgcgat tttggaaaaa
     4921 gtagttttat cacattcttt tgctaaataa agctcattga tacagtcttt atgatattct
     4981 aaaatataaa aaaatatttg cttcccataa actatcatat taaaatttta cctaatcttg
     5041 acttaaaagc agtttttgat aaatttcttt tgcatttttt ccattgatct ttgataataa
     5101 ttttgctttt gcttttaaag gcagctctaa atccataata tctttttcac aaagagtatt
     5161 ttgcaaaaaa ttttgctctt ttgattgcaa tactacaacc cattcaccgt ttaaattaga
     5221 cttttttaaa atttcagaaa gctctttagc attgccttta aatttttttt caaatttttt
     5281 actgatttct ttaatcaaaa aaatttctct ttggctgtct agaatcataa tttgttctac
     5341 taaagataaa atacgtttgg gggattcgta aataatactt ggataaggaa agtttaaaat
     5401 tttttctata tctttttgtc tttctttgcc tttatttgct aaaaaaccaa taaagataaa
     5461 ttctttttga caaaatgccg agcttacaag agcaactaag gctgcatttg cacctggtaa
     5521 aatttcatag gtgatattat tttcttgtgc aaattctacc aaagccttgc caggatcact
     5581 aatccctggc attcctgcat cgcttaaata agctacattt ttttcaaata tctttaaatc
     5641 aatacttgct aaaacttctt tttcattatg ggagtgtaag gctataaatt tagaaatatg
     5701 tatatcagtg tgaaatttgg tatttaataa cgaaatcaaa gacttactta ctcttgtatc
     5761 ttcgcaaaac acaagatcgc aagtctttaa aagttctaag gctctaaaag aaatatcgct
     5821 taaatttcct atgggagtag gaataaaata aagcataatt attgcattgc gtattttttc
     5881 ttaaatttct ctacacgacc tgcagcatct acaatttttt cactgcctgt aaaaaaagga
     5941 tggcaatttg aacaaatatc tactcttaat tctgctttgt ttgactttgt tgtaaaagta
     6001 tttccacaag cacaacttac tttgcattct acatattctg ggtgaatttc ttttttcatt
     6061 agttttcctt aaaaattaaa acaataagcc gtgattataa attatttaac ataaaaaaga
     6121 gattaattta agaaaagtta aagcaaaatt tttgaagcta tagctataat agctgtttga
     6181 ctttttagaa tattagagct tttaagagag attttccggt taaacaataa tctctcatca
     6241 ttgttaaatc caccttcagg acctataaaa tataattctt tttcatcgaa atgactttgt
     6301 tgttctcctt gaaaatcaac cataattgca tttggaaatt tttgaacaaa ttcttgagtg
     6361 ctttggtgga taattaaatc cattttagta tttctaccgc attgttcaca agaagaaata
     6421 atgatttttt caaatctttc taaatcgatt ttaaaatttc tttgtgaaaa atttgtaaaa
     6481 accaaatgta acttttttac tccaagttca tttaagaaag gtagagtttt ttctaaaatt
     6541 ttaatatcta taatggctaa ggctaagttt aattcacttt gttttatatt ttgtgatttt
     6601 ttgtttaaaa attttaaagt gcaagaattt cttgttaaat ttgtgattgt atagttgtaa
     6661 agaaaattat cttgtaaatt tctaagattt agctccgaat tttcctttac tcttcttact
     6721 tttaaatgat taaagttttc tccttgaagt tgtataaact cttctccagc ttgcttgtta
     6781 tacaaaaatt gcattttata gatatctttc tattaaaaaa ggcaaaaaca ataaaaaaat
     6841 ttcaaaaggt aaaatcaaac aactaatcca tctaaaagtg gcatattttc taaatcttct
     6901 tgctttttta aaacaaacaa agtgaaaaat tgctaaggca aaaattaaga tccaagaaaa
     6961 aatcattacc cagatattga cattcatttg aaattgtttc attgctgata acaagcaacc
     7021 tgtaaaaata atcaaagcta aaaataaata ataaattggt aaaaataatc gtattctgcg
     7081 aataaaaatg aattcggttt taaaatttcc ttgtgttagt ataagataaa aaagcattaa
     7141 aaaaccgctc gcataaagac tataaagatg taaagctaaa aagaattcgt aactttgatc
     7201 cattattttc ctttgtttat aaaatcagct aaattttgaa tttgttcatc acttaaaaaa
     7261 ctatggtttt tatcttttat catttttatt ttttgtataa aaattttatt gcctaaggtt
     7321 ttaatggccg tgctgttttt aggttttaat tccccttttt ctccatgaca agtggcgcat
     7381 ttttgtttat ataaagagtt gataatagta ggattggctt catgctcatc atctaaactt
     7441 tgtgcttcat catctacagg taaaggcagg ttggagtcac ttaattctgt tttttcatcg
     7501 ttttgttcta tttggactac ttcttgatct gtattttgag tcttggaaat atttttttca
     7561 tcattagaac aggcagataa aactaataaa aaaaaactta aggcaattaa aattttagct
     7621 ttttgcatta aatctccttt ggatttataa aaatttcttc attttttaat ttgttataaa
     7681 aatctatatc attccattct gctttaatgc cattggaaaa ttctatgtct tgaagtgaaa
     7741 tttttgacat tagctcacta taggcatctt ctctaaaacc ttgtgcatag cctgttcttg
     7801 tttcatgaac aatgatgctt tgtaaagtca ctccttgttc tccatttacc atttttgttt
     7861 gttttaataa agcatctata agtatgaaaa atacgcgaca aaaattttca gcacttacat
     7921 taacaggcag gcaaatccaa cgacttgaat attttttcat ttcttctaaa tattttgcgt
     7981 catcatattt aaaaagagtg atagcatgat caaaactatc aataatttgg cgtatatagg
     8041 tttttaaaag tccaaaatca tagaccattc cagcattatc taaatatttg ctttcaagta
     8101 aaacttcaac tttgtaagaa tgtccatgaa tgctactttt gcaacgctta gaagaacaaa
     8161 atctaacaat gtgtgcgttt tcaaattcaa ataattttct tataatcata caccctcttt
     8221 atcgttccaa agacgaatat gaattctatc agaataatta taaccattct taatacaaaa
     8281 ttcagcaatt ttttgagcat tttttttaag gttttgctca ttttcaccca taggcataca
     8341 aaaaatttga tttggagctt cttttagaat ttcattgatt tctaaaaatg aattatcaag
     8401 agtattggca tctaaaacaa atttataaaa actatctttt gcgtaatttt taaatgcttt
     8461 taaagcttta aaatttaatc gtttatcttt ttttatccca ctattttgga gtttaacgct
     8521 taaagcaaaa atacattctt tgtaaaaagg atatctatca aaatcaattt ctatgcttcc
     8581 attgctttca aagtgtattt caaatttatt ttttaataac atttggataa attttataaa
     8641 ttcaggattt tcataatgga ttaatggctc tccacctgtg ataacaacta taggatcaaa
     8701 gtcttgtttt aattttatca ctctttttaa aagttcatta gcatttaaag tttcataact
     8761 ttctttaaaa tcttttgtga aaacagctct tatcgtgtca catccaatga gagttttatc
     8821 gttttttgat atttttacat taaaacctaa acagttgaaa ttgcaaccag caaaacgcat
     8881 aaaaatagct aattttccat tatatttgcc ttctccttga atgcttaaga aactttcaac
     8941 aagttgcaaa attaacctcc agtttgataa aaagcacgag atgaggtttc attatcaaca
     9001 acactccatt tatttttttc tggtttattt cttaatactt cttgtaatat ttctacagcg
     9061 gctttaatat caccttttcg aaccgcttct tttatgctta atgcttcatc aaaataaagg
     9121 caaggtatta acaagccttc agcacttaag cgtatgcgat tgcaagaatc gcaaaattca
     9181 tggctatgag gatctataat tccaaattca taatcatctg ccttgtaaat actcacaggt
     9241 gctttttcat ctttttttat aagttgaatt tgatattttt gactcaaaat ttgtataatt
     9301 tcatctcttt ttaatccttg taatttacca taagcatgag tattttccat aaattctata
     9361 aagcgaattt gagctttttt tgattttgca aattccaaaa gagatatcag ttcatcatcg
     9421 tttaaatttt taagagctac agtattaagt tttactttca aatctagatt taaagcttca
     9481 tcaattccag ataaaacact atctaataca tctttttgcg caagagtttt tgcttttttg
     9541 tgatctaggg tatcaagtga aatattaagt cgtttaagtc cagcattttt taggtcttta
     9601 gcaaagtctt ttagtaaaaa tccatttgta gttatagcaa ggtcaatatc gcttttataa
     9661 tcgctaatca tttttataaa aatacttaaa tcttttctta ataaaggttc tccacctgtt
     9721 atacggattt tttcaattcc ttcgtctata gctgctttaa caaataaaaa aagttcttcg
     9781 aagcttaata aattttcttt tggctgataa tcgaaaggaa tttttggcat acaataaagg
     9841 cagcgaaagt tacatctttg tgtaactgaa attctaagat aatttatctt tctaccgaat
     9901 tgatctataa gcatttattt tccattctat tttattaatt tcttaaattt taagacaagt
     9961 tctacatttc cagtgccaat gcgtaaatct ttagcgattt gttctatgct ttttccttct
    10021 ttgaaaagat tttctatttt ttgttcttct gtatcgtaat ttggtgtaag tttagccatg
    10081 ctttgtgctt tttgttccaa atttaaaaga cgattttgtt gttcattttg aaaatcttct
    10141 atgatatgtt ccatagtttt tagtgttctt aaaacaggag tgatttttga actgatttgt
    10201 ttatcaagtt caatcataat ttcttctttt aaaagagagg ttttatagtc ttcatcctct
    10261 tcgctatcat ctttaactcc taattcttta cgaaaataat gaagttcttt ggtaatatct
    10321 tctatcacat tttgaagttt tgctattttt gcattatttt ctctttcttt gatattcata
    10381 taggctagca ttgcaattaa aagcacaatt ataaaaacta aataaagtac atcatcactc
    10441 attcttggcc tttcttattt cttatcatat ttctttgaat ttcaacaaca aaagcatcaa
    10501 aagccatttt gtcttcaggc ttaattttga taatttttgc caatgtttga ctttgagctt
    10561 tgataaaaat agctattttt tgattattta aatcaaatct taaataatat tctttatctt
    10621 cttctaaaat agtatccaaa aaatttagat attcaaaatt taaagattct attacccctt
    10681 tttgcttaag cggtataagt tctttatttt tatctaaaga attttcaagc cttaaaatat
    10741 cttcttttag gcttaaaaga agatcaaaaa taattttttc accctcatca aaatcaatgc
    10801 gtaaagcaag ttttttccat tttaaaattt gagaaattgc tccaagtttt aggtattctc
    10861 caagaaaacg gttattttct atttcacaac attctaaatg agcttcaaat cctgctttaa
    10921 aaagtgttaa ttccataata aatcaatcca aataaaaata aaaaagataa tacttaaata
    10981 accatttaga gtaaaaaatg ctctatcaat atgagcaaaa ttcttgtgaa caattttatg
    11041 ttccaaggct aaaataatac cgcttataat taccccaata agtgctattt ttccaagtgc
    11101 tataccccaa acttcccata caaaaagaag ccaaaataat accgctaaaa tatgacaaaa
    11161 agctgatata aataaagtag cctttgagcc aaatttagca ggaatagagt gaagtcctac
    11221 ttttttatca tattccatat cttgcaaaga ataaagcaga tcaaacccag ctgtccaaaa
    11281 agttacacct aaacataaaa taacgctata aatgtgaatt tcacccataa ttataacact
    11341 tcctgcaata ggcgcaagtc ctaaacaaaa tcccaaaact aaatgcgcta aagaactaaa
    11401 gcgcttaaaa gctgaataaa tagccaatac aaaaagcaca ggaaaagaca aataaaaggc
    11461 caaggtatta ataaaataag aacatgatat aaaaataagt gcattaataa taataaaaat
    11521 ccatacgctt tttctaccta tttttccact gacattaggg cgatttgcac aacgaggatt
    11581 atccttatct atatcttcat ccattaaacg atttgtagcc atggcaaaat ttcttgcact
    11641 taccgcacaa ataataccta aaatcaatgc cttaaaacca aaccaagcag tgtcatttgc
    11701 aagttttgat gctacaatca tagaggaaaa taaaaaaggc aaagcaaaaa tagaatgctt
    11761 aaatactaca agttctaaaa tatctttaaa ttttatccag aatgtgttca tttttctact
    11821 ttaaaatatt ttttgctatg attttactaa aatttttata aattttagga taaatattaa
    11881 aatgtttttt gaaatagcat taataggaac aaccgcgagt ggaaaaacat acatagccaa
    11941 tactttagca agagaatttg atgctgttgt tttaagtctt gatagtcttt gtgtttataa
    12001 agagattaat atagcaagtg ccaagccttc acaagatgat cttgcgagta taaaatactt
    12061 tggggtaaat ttattgagcg tgaatgaaca ttttaatgtt gagttattca taagagaata
    12121 tcaaaaagca aaagaatttg ctttagctag aaatttacct ctaattatag taggtggaac
    12181 tggattttat ttaaaaacta tgatagatgg tttaagtgaa aaaaccttag agtcaaagag
    12241 ttctttaaat aacgatgaaa tttatgctct tttattaaat attgatccaa actataaaat
    12301 agaaaaaaat gatacttata gattaaaaaa atggctgggt atttatgaac aaacaagaga
    12361 aattcctagt gaatttttaa aaagaacaca aaaaactggg gtgcttaaag atatagaaat
    12421 ttatgagctt gcatgggata aagaaatttt aaaaaaacgt attaaaacta gaacaaaaga
    12481 aatgcttgat aatggacttt tagatgaagc aaaaattctt ttttctaaat ttgatcataa
    12541 acttaaagca ttaaattcta taggtttgaa agagtgtaaa gaatatttag atggagaaat
    12601 ttcctttaaa gagcttgaaa atttaatcac gatacatact acacaacttg ccaaaagaca
    12661 aagaactttt aataaaaaat ttcaaagtaa agccttggaa tttgataaag ctttagctat
    12721 tttaagaatg aaattttcaa tcgaaaaata aatgtt
//
LOCUS       DAZAND010000051        12707 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.051, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000051 DAZAND010000000
VERSION     DAZAND010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12707
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.051"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            17..613
                     /gene="ahpC"
                     /locus_tag="ACHDOB_001078"
     CDS             17..613
                     /gene="ahpC"
                     /locus_tag="ACHDOB_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HFN3326003.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
     gene            732..1820
                     /gene="flhB"
                     /locus_tag="ACHDOB_001079"
     CDS             732..1820
                     /gene="flhB"
                     /locus_tag="ACHDOB_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HFN3326004.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(1826..2569)
                     /gene="motB"
                     /locus_tag="ACHDOB_001080"
     CDS             complement(1826..2569)
                     /gene="motB"
                     /locus_tag="ACHDOB_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HFN3326005.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(2572..3348)
                     /gene="motA"
                     /locus_tag="ACHDOB_001081"
     CDS             complement(2572..3348)
                     /gene="motA"
                     /locus_tag="ACHDOB_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HFN3326006.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTNE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGRKMKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPKISQFDKG"
     gene            complement(3364..6003)
                     /gene="polA"
                     /locus_tag="ACHDOB_001082"
     CDS             complement(3364..6003)
                     /gene="polA"
                     /locus_tag="ACHDOB_001082"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HFN3326007.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEHKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISV
                     SQEGYEADDIIASFVRTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPHQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYENLEVQDLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLIQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMSENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFGLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAK
                     SYIEKYFENFTSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            6164..7525
                     /locus_tag="ACHDOB_001083"
     CDS             6164..7525
                     /locus_tag="ACHDOB_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3326008.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGYLGDKHGRKNVMMS
                     TVALMGISTTLIGFIPSYAVIGVWAPICLVILRFMQGFGAGAELSGGTVMLGEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDRFGRRITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGTWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            7522..8529
                     /locus_tag="ACHDOB_001084"
     CDS             7522..8529
                     /locus_tag="ACHDOB_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HFN3326009.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILASKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLVPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGTKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVDLSTKNCVKILKNVDNTKLLKLIKERLLKGVCYENYESIT
                     T"
     gene            complement(8485..8928)
                     /locus_tag="ACHDOB_001085"
     CDS             complement(8485..8928)
                     /locus_tag="ACHDOB_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HFN3326010.1"
                     /translation="MFDFLYNDISYLGLFIVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYGLAYLGKQKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(8933..11758)
                     /gene="uvrA"
                     /locus_tag="ACHDOB_001086"
     CDS             complement(8933..11758)
                     /gene="uvrA"
                     /locus_tag="ACHDOB_001086"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HFN3326011.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHCACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKGLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRAQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCQGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            complement(11831..12616)
                     /locus_tag="ACHDOB_001087"
     CDS             complement(11831..12616)
                     /locus_tag="ACHDOB_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFN3326012.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNLINF"
BASE COUNT         4013 a         2000 c         2099 g         4595 t
ORIGIN      
        1 ttatttagga gaaaatatga tagttactaa aaaagcttta gattttactg ctccagcagt
       61 attgggaaac aatgaaattg ttcaagattt taatctttat aaaaacatag gtccaaaagg
      121 agcggtagta ttcttttatc caaaagattt tacttttgtt tgtccttcag aaattatagc
      181 ttttgacaaa agatatcaag aatttaaaaa ccgtggcatt gaagtaattg gaatttcagg
      241 agataatgaa ttttcacatt ttgcttggaa aaatactcca gtaaatcaag gtggtattgg
      301 tcaggttaaa tttccgcttg ttgctgactt aactaagcag attgctagaa attttgatgt
      361 actttatgca gaagcagttg cccttcgtgg ttcgttcttg cttgatgctg atggaacagt
      421 tcgccatgct gtggttaatg atttaccact aggtagaaat atagatgaaa tgttaagaat
      481 ggttgatact atgcttttta caaatgagca tggtgaagtt tgtcctgcag gatggaataa
      541 gggtgatgaa ggtatgaaag ctaaccctaa aggcgtggct gaatatcttg gcaaaaacga
      601 agctaaactt taatttctta gtataaagcc tctttacgag gctttttctt catttttatt
      661 ctttaattga aattcataaa ttttctacta taattttaca cacatattaa aatttttatt
      721 taggctaaaa tatggcaggc gaagatcaag aaaaaacaga agaacccacg tccaaaaaga
      781 tagaagatgc gcgtaaagaa ggtaatgttc caaagtctca agatgcggca gctattgtaa
      841 ctttgataat tggagtaact ataactttat ttatgatgag ttttatgggc gagagaattg
      901 taaatttata tagatactat caaagtttta ttggtgttga atttgatttg cgtattattc
      961 aagccattat gattaaaagc atttttgagg ttttaattat tcttgcacct attgttttaa
     1021 gtattatgat tgctggggtt ttgggaaata ttatgcaatt tggttttatt tttacaacta
     1081 aacctattat gccaaattta ggaaaaatca atcctctaaa aggtttaaaa aacctttttt
     1141 cattgaaaaa aattgttgaa agtataaaaa ttattttaaa agtgggtatt gtttttacta
     1201 tagcttttat agttttactt aaatttatgc aagagcttcc aagagttgag ctttatacta
     1261 tggttgcaca gcttacttgg ctaagagaca gagctattgt tttagcagct attgttatag
     1321 ttgctttttt aattattgct gttttagatg tttttttggt gcgttttcag tattttaaag
     1381 gtttgcgtat gagcaaacaa gaaataaaag atgagtataa acaaatggaa ggagatcctc
     1441 aggttaaagg tagaattcgt agacttcaaa tggaagctgc gcgtcgtcgt atggttcaag
     1501 atgttgcagg tgcggatgtg gtgatcacaa acccaacgca ttatgccgta gctattcgtt
     1561 atgatacaag taaagaacaa gcccctaggg ttgttgctaa aggagtggat tttctcgctc
     1621 ttcgcataaa acaagtagcc tatgaaaata atgttgtagt ttatgaaaat cctcctttag
     1681 caagagagct ttataaagct tgtgatgtta atgatcttat tcctagggaa atgtttaaag
     1741 ctgtagctga ggtgctagga tttgtttata atacaaataa taagagtcgt ttagctggtc
     1801 aagtaaaaaa aggaaactaa aacttttaag gtgctttagt tcctattttg ttaataagct
     1861 caagaaccga tttttgagta cttgtatctg ctgtatcaac tttaaaatat atttctactc
     1921 tattattttc tagagcttgt ggatttccat tgataggatt attaagcccg tagcttttaa
     1981 tgctaatgtt ttttaaattt gctccacctt ctataaaata ttttaataca ttttccgctc
     2041 tttggtaggc gagttcataa cttcttataa tagagtcgct attgtctgta tagcctctaa
     2101 tttctatttt tgcttgaggt ggcaaatatg ttgttagttc agccatacgt tttaaataat
     2161 cttgtatatc agctgaaacg atttgagcgc tacctctttc aaattcaact ttagatggaa
     2221 ggttaagagc aacctgattg tcgctttgat ctagagccgc ttgaagacgt ttgatagttt
     2281 cttgctgcgt catagtcatt tgttttaatg atttgagttc atcactttct tcttttgctg
     2341 cgcctttata tttttcttga gttttactct cttctttgac tgtttgagta gaggtgtaat
     2401 caaagatttt aacaaattca gtttttaaag cctctacttt agcaggattt gttttagaaa
     2461 ttgcccaaag agcaataaaa agtgccaaaa gcaaacttag aaagtctgca taaggtacag
     2521 cccatttttc acctgcagga cattctggac atttatgttt cttggccatt tttaaccttt
     2581 atcaaattgt gaaatttttg gatcatcgtg acttaagaaa ttaaaaagct tagcttccaa
     2641 atctctaggg ttcgcacctt ctgcaattcc ttttatggct tcagtgatga caatttgctc
     2701 ttttacaaga tccattccgt tagctttcat ttttcttccc caaggggcaa aaagcgcata
     2761 agcaccaaaa atcccagtaa ccgtagctgt aaaagcacct gaaatacccg ctgccattgc
     2821 ctgaggatta tctagtaatt taagagctag aataagacca aaaaccgcac caacaagtcc
     2881 catagtaggg caagtttctc caaatactat ccaatattct gcgcattctt tataatgctc
     2941 ttcaagttgt tcggtttgta tttccatgct ttcgtgaatt tcttcaaagc ttttaccatc
     3001 tacaagcatc atcatagcat tttttaaaaa ttcattttca atctcattgg ttcttgattc
     3061 taatgctaaa agaccatctc ttcttgcaat aatagcaaat tctattaact gggctatcct
     3121 ttcaggtaga tttactccag aacctttaaa gacaactttg agttctttat aagctgcttt
     3181 tacaattttt ttatgtgtag aagtcattgc acaaaatgca gccgttggca taactataag
     3241 aaaggaagaa agatgcacaa catgtaaagg attaccacct tctagtatat ctcctactga
     3301 aatactagta actgcaagca ccattcccag tatggttgaa agatccatta aatatctcct
     3361 tgattatttt aaatcgcccc aatttttggc gatacttgag cttgttttta attttacttt
     3421 taattttact atattttcca taatatctct agtttttttc acaaaatttt cacataaatc
     3481 atcttttact tcaaaaatta attcatcgtg aatttgcaaa ataagctttt tatcttcatt
     3541 taattccttg ttgatttcta acattgcaag tttgattaca tcagctgctg agccttgtaa
     3601 gattgaatta atgctttctc tttcatacat ggcaatttgc ataggttttg cgttttcaaa
     3661 atcaaaataa cgcttgcgac cgcttaaagt agtgataaaa ccattttgtt tagctttgtt
     3721 tttaactgtt tcaaaatatt tcttaatact agtaaaattt tcaaaatatt tttctatgta
     3781 agatttggct aaatgagctt ctatttttaa attttgactt aaagttttat agcccatgcc
     3841 ataaataagt ccaaaattta tactttttgc aacacttctg gtttcataat tgctttctcc
     3901 aaaaatcatt atagctgttc ttgcatgtat atcttcatcg ttagcaaaag catttaaaag
     3961 tttttcatct tcgctaaaat gcgcaagcat tctcagttcg atttgagaat aatcaagaga
     4021 gataaaacta aatccatctt tagctacaaa gcaagattta taatcttttg cgtattgtcc
     4081 gtgtgcagga atattttgca aatttggatc tttagatgaa aggcgtcctg tagcggttcc
     4141 agtctgtaaa aaacttgaat aaatgcgtga atttttatct tttaacgcta gttttaacaa
     4201 aggttcgcaa taagtggaat aaagtttggc aagttctcta taatctaaaa ttttggcaat
     4261 tacaggatgt ttatctaaaa gtgcatttaa aactttttca tcggtagaat atcctgtttt
     4321 tccttttttt ccacttggaa gtttaagttt ttcaaaaagt atatcaccta cttgtttagg
     4381 tgagtttagg ttaaatctat cctcacaaag agtataaatt tcttcactta aatttttgat
     4441 ttcattttca aattttttca taaggatttc aagtgcattt gtatcaagct ttatgccatt
     4501 ttcttccatc atcataatga ttttaatgaa atcaaattcg cagtttttag caagttctag
     4561 caaaggagtt tcaagatttt ttaaaaaata aagataaaat cttaaagtga tataagcatc
     4621 ttccgcagca tatttgcaag ctttttcaag ctctacactt gcaaaatttt ctcctttttt
     4681 aacaaggctt tcaaaatgta aggtttcata attaaaaagt cttaaagcta aatcatccat
     4741 atttactctt aaagaaggat ttttaagcca tgctaaaatc attgtatctg cgtatttttg
     4801 aggtaaattt aatccaaaat tgttttgaat gattttaaaa tcatatttga gattgtgtcc
     4861 tataacaaaa tgattaaaga ttacttctat agcttttttg gcgctttgca atgagatttg
     4921 ctcacctact ccaagatagt tatgagttaa aggcacgtaa aaagcttcat tttcactcat
     4981 gcaaaaacta aaaccaacaa tttttgcttc ttttgtatca agtcctgtgg tttcggtatc
     5041 aaaagcaata atactttctt tatcaagggt atttaaaatt tcaaaaagtt tgttttcatc
     5101 ttgtattaaa gtggctttaa aacctaaatt tttatcttta ttatcaggat tttgacgcag
     5161 ttttttaagc aaagtattaa gttcgtaatg ttctaaaatt tcaagtattt ttaaaagagg
     5221 ttcttcatca ggataagttg ctttttctat aagatcttgc acttctaaat tttcatacaa
     5281 agaggctaat tttttgctta aaaatgcatt ttccttaccc tctaaaagca aattacgact
     5341 tctttcgttg cgtactaggg ttaaattttc ataaattcct tctatactac caaattcatc
     5401 aagtaaggtt ttagcccctt ttgcacctat acctttaacg cctggaatat tatcagaact
     5461 atctccgcaa agagctaaaa aatctctgat ttgatgaggt tttactccgt atttttctaa
     5521 acacgctgct tcatcatagt cgtttttaga aataggactg taaatgcttg ttttaccatc
     5581 ttttatgagt tgataaagat ctttatcttg agtgataatg cgtacaaaaa tatccctatc
     5641 ttcacaagtt cttacaaaag aagcgatgat atcatcggct tcataacctt cttgagaaac
     5701 gcttataaaa cccatttttt ctatcatctc tatgcaaatt ggaatttgtt ctagaagttc
     5761 aggtggtggt ggagtgcgat tttgtttata gtttggatca atttcgctac gaaaagtttt
     5821 tcctttggag tctaatgcaa aaacaatata atcactttta tgttcatttt ttaagctata
     5881 aataaaattt gcaaaaccgc taatcattcc actagcttgt ccttgtgaat ttttaaaacc
     5941 ttttaatgcg tagtaaagtc tgaaaaaaaa tccaaaagta tcgataatag ttaaagtttt
     6001 cataataatt tcttctttaa taaaatatat ttttaagctg tattatttca aaattttgct
     6061 taaaatgtct acaatttaag atctttaagc aaaaacactg caatttttag ccataattac
     6121 aaattattta taaaaaaata tattaaaata taaggataat gtaatgacaa atcagcaaat
     6181 tgatggaatt gcggataaga attttaatac acctgaaggt aggaaagttt ttaaaaaggc
     6241 agttttttct tgctggttgg gaactgctat ggaatatgca gattttgcac tttatggttt
     6301 agcagctgca acaatttttt cagaagtatt ttttcctgag caaactccag taatcgcact
     6361 tttgcttagt tttgtaactt atggcatagg ttttattgca agacctattg gggctttgtt
     6421 ttttggttat ttaggtgata aacatggaag aaaaaatgtt atgatgagta ctgttgcttt
     6481 aatgggaatt tcaactactc tcataggttt tattccaagt tatgcagtaa ttggtgtttg
     6541 ggcgcctatt tgtttggtta tattacgttt tatgcaaggt tttggtgcag gagctgaact
     6601 ttcaggtgga acagttatgc taggagaata tgctcctagc aagagaagag ggcttgtttc
     6661 ttctgtgatt gctttaggat caaatagtgg aactttactt gcgtcttttg tgtggctttt
     6721 gatggtgcaa atggatgagg caagttttaa agaatggggt tggagagttc cttttatggg
     6781 aagtatttta atcgctcttt ttgctgtata tattcgtttt catgtcaaag aaacccctgt
     6841 ttttgaaaag caaaaaaatg aaatgatgaa attgcgtctt aataacgaaa agcatatgaa
     6901 aaaagatgaa agaagttttt ggcaaagaag tcgtgctttt tggactatgg tgggcttaag
     6961 aataggtgaa aatggacctt cttatcttgc gcaaggtttt attgtaggtt atgtgactaa
     7021 aattttactt ttagacaaat cagtagctac tacagcagtg atgatagctt cattggtggg
     7081 ttttttggtt attcctttgg caggttattt aagtgataga tttggaagac gtattactta
     7141 tagaatgttt tgtttacttt tgatgattta tgcttttcct gcttttatgc ttttagatag
     7201 taaaaatgaa attattgtga ttttaactat tattgtaggt atgtctttag catctttagg
     7261 gatttttggt gtacaagcgg cttggggtgt agaacttttt ggggtaaaaa accgttatac
     7321 aaaaatggct tttgctaagg agctaggttc tattctttca ggaggaacag cgcctatggt
     7381 ggcttctgct ttgcttgcgt attatggcac ttggtggcct attgcgacat attttgtatt
     7441 aactgcaggt ataggttttg tgactacatt ttttgcgcca gaaactagag gtagagattt
     7501 aaataaaata gaagatgcga tatgagactt atcttagaca cagatatagg caatgctatt
     7561 gcaggagcaa ataccgatga tggtttagcg cttgctttga ttttggcatc taaagaaatc
     7621 aaacttgaaa tgctaagcac ggtttgcggt aatgttccaa gccttgttgc ctatagtgtg
     7681 gctaaggatt tatttaaacg tttaaattta aatattcctg tttatttagg agcgaatgaa
     7741 gccctaaaag aaccaagtaa agcttggcgt caaagacttg atgaaagtgt aaaaaatttt
     7801 aaacttgaat atctttggga aaatataaaa agtcccgaaa ttttagaaaa tataaatcct
     7861 gatgcgattt ttaaaatggg tgagttggtg agtaaaaatc ctaaagaaat ttctatttgt
     7921 gcgataggac ctttgacaaa tatcgctatg actatgaaaa tttttaaaga ttttgatata
     7981 aatcttaaag agctttttat tatgggcggt agttttgata tgccttatta tactaaagat
     8041 acaaattttg gtttcgatcc tgaggcggct agtatagtgt taaattcaag agctaaaatt
     8101 acactcgtgc cttataatgc aaccatgcag actttattaa cacacgagga tttaaaagag
     8161 ttgcaaggta agaatatttt atgtgatttt atcgttgaaa ctttaggtgt ttggattgat
     8221 tatgcttcta aaacacgtgg tacaaaggga acttggatac atgacgcttt aacgatagct
     8281 tacgcattag attctagtat tgcagatttt gatgagtgtt atgctgatgt tatttgcgat
     8341 agttctttgg caagaggtat gagttggcgt tgttttaaag agccaaaaat gagtatgggg
     8401 gtggatttaa gcactaaaaa ttgtgttaaa attttaaaaa atgtagataa tacaaagctt
     8461 ttaaaactta taaaagagag gcttttaaaa ggagtttgct atgaaaatta tgaaagcata
     8521 acgacttaat tttccaagta agataaaaaa tatagttttt aaaaaagaat atttcgcaaa
     8581 accaagtccc aaggcaaaaa gatctcccac caaaggtaaa aaagtaaaaa aagcaaatat
     8641 acttccaaat ttagcaaaat tagcattgaa attttctaat tttttcaagg atttgctaaa
     8701 gtatttttct aaaatttttt gcttaccaag ataagccaag ccataagtac ttaaacttcc
     8761 taaggtatta cccaaagtag ctacgataag cactaaattt ggattaaaat caagttttat
     8821 aaagcctaaa acaaaggctt cgcttgccaa aggtaatagt gtgcttgaaa gaaaacacac
     8881 tataaaaagt cctaaataac ttatatcatt atataaaaaa tcaaacataa aattatgatt
     8941 tttgtgtatt tttaagctct aagtctagat aatatcctgt gtaagaacgg gtttttttgt
     9001 gttctttagc gactttttcc acgcttcctg tgcttataac ttttccacct ttaactccgc
     9061 cttcaggccc catatcgatg atataatcag catttttaat cacatccaaa ttatgctcta
     9121 ttacaaaaac cgaattttta agatcaacca aatgttgtaa aactaagatg agtttattga
     9181 catcttcaaa atgcagtcct gttgtaggtt catcaagtat ataaagcgtt tttcctgtat
     9241 cgctacggct tagttcttta gcaagtttga ttctttgtgc ttcacctcca cttaaggtgg
     9301 tggcattttg tcctagggtt agatagtcta aacccacttt tactagagtg tctaattttt
     9361 gcttgatttt aggaacggct gtaaaaaatt cactcgcttc taaaacactc atatttaaaa
     9421 tttcactgat atttttgcct ttatatttga tttctagcgt ggcatcattg tagcgtttgc
     9481 cctgacaagt atcacaaact accataacat caggtaaaaa atgcatttct attttgattt
     9541 ctccatctcc gctacacttc tcacatcttc cacctttaac attaaaagaa aagcgtcctg
     9601 ctttataacc acgcatttta gcttctttag tggcggcaaa aagatttctg atttcatcca
     9661 tagcacctgt ataggtggca ggatttgaac gtggtgtgcg tccaattggg ctttgatcaa
     9721 gataaatgac tttatcaagt ttttcaagtc cttctatttg caccccacca agttttttaa
     9781 cttttttagc gcggtttaat tcctcttgtg caaaaggaag tagggtttga agtatcaaag
     9841 aactttttcc agaacctgaa actcctgtta tagcgactaa attttgtaaa ggaaatttta
     9901 cgcttaaatc ttggatattg ttaatattta catttttaag ttcaagccat tctttttgtg
     9961 ctctgttttg aagttgtgaa atttgttttt taccattcat ataaagtgca gtttcgcttt
    10021 tgctttttaa aagttcttta taagttccac taaatacaac ctcacctcca aattttcctg
    10081 cttttgggcc aatatctaca ataaaatctg cttcttctat agtcatttta tcatgctcta
    10141 cgacaattag ggtattgccc ttttgttgta aatttcttaa agttttaatc agttttgcag
    10201 tatctctttc atgaagtcct atgctaggct catctaagac atacatcact ccacttaaac
    10261 cactgccaat ttgtgaagct atgcggattc tttgtgcttc acccccacta atcgttcttg
    10321 catcgcgccc taaggaaaga taacctagcc ccacatcata caagaaaaac aatctttcgt
    10381 tgatttcttt taggataggt ttagaaataa gtttttgttg ctcgcttaaa taggaaaaat
    10441 ttttctcatc tgcaaaaaag gccgtactat cttctatgct catatctaaa atttcaccca
    10501 agcctttttt ggctactttc acggctaaac tttcgggttt taaacgatgc ccaccgcagt
    10561 ctttacaaat tttttcactc atatattcgg ctaaatcttt ttcatctttt agcatttcat
    10621 aagccatttt aaccacgcct tcaaaggtgc gttttagacg atttcttttc caaagaaatt
    10681 ctatagtttt ggcattacca tacaatacaa gacgtttttg ttcttcgttt aattgcataa
    10741 aaggtatttt gataggaatt tcattttgtt cgcaaaaggc gattaggaat ttataataat
    10801 aacttttgtt aaaaccatac atgattttaa cagcaccatt ttcgaggctt aaattttcat
    10861 cgataatttt tttcatatct aaagtataac gaatgccaag tccatcacaa gcttcgcatg
    10921 ctccttttgg agaattaaaa gaaaagctta aaggttcaag tggaacaaag gaaattttac
    10981 aatcaaaaca agcgcagtgt tcgctaaaat gatagtgttt attaaggttt atttcctcat
    11041 gatttaaaac ttctatttct atttctccaa agctttcttg taagcctttt tctatatcgc
    11101 ttgcaagacg agaaagtaaa tcttcttgaa tttcaagcct atctatgaca agtttaatgg
    11161 tgtgtttttt ggttttggcc agttcaattt cttcatcaag tcttactaaa actccatcaa
    11221 tttgagctct tacatagcct ttgttgcgta aattttcaag taaatctgca taagttcctt
    11281 ttttttctcg tatgagtgga gcgtagatga tgatttttgc accttttgga aattttaaaa
    11341 tttcactgac tatatcactt gcactcatag atgagatttt ttgtccacat tgatgacaat
    11401 gttgaatgcc cactcttgca tataaaagtc ttagataatc ataaatttca gtgatggttc
    11461 ctacagtaga gcgtgggttt ttagaagtgg ttttttgatc tatagcaatg gctggggtta
    11521 aaccttcgat tttatcgaca tcaggtttgc ctaccttatc taaaaattgt ctggcataag
    11581 cacttaaact ttctatataa cggcgttgtc cttcggcata aagagtgcca aaagcaaggg
    11641 ttgattttcc actcccactc agtcctgtaa aaacaatgag tttgtttttg ggaatttcaa
    11701 ggtggatatt ttttaggtta ttttctcttg caccaatgat ttttatggta tcgttcatag
    11761 tctttcctaa acattaaata aatttaagat tttagcataa taatattaaa agaacttgga
    11821 taaatccaag ttaaaaattt ataagattta gcttattaag taaagagtgg gtggttccaa
    11881 gtattgataa ggcatatacg caaagtaaaa tttttctatg agctgaaata tgcatttttt
    11941 ctatgatttt aattcctata aaaactccaa ccatagaagc tatacctact agtattcctt
    12001 tatgaataac ttcagagtct ataactccag aatttgaaaa agatataata ccagagactg
    12061 aagcaaaaat aacaaaaaac aaggataaag aaacaacttt tttactatca tagcctaaaa
    12121 aataagctaa aatcggagca attaaaagtc caccaccaat tcccaaagaa atagcaaaaa
    12181 taccagtaaa agctccagca ataaataaaa tgacattctt tacccaaacg cttctttgat
    12241 tttgcacaat gttttcttta attccaaaag catatttgat aaaaaatata caacttaccg
    12301 ccaaaaatac gctagtaaga gctacatcac ttaaagcttt taaaagcatt ccgctaaagc
    12361 ttgcccctat gagtcctcca aaacctatca taataccatc tttaagattt agattttttt
    12421 tcttataatt aatataagag ccaaaaactg ctgcaaaaat catttgcaat actgaaattc
    12481 cgatagcatg gtgagcactt gctccaagtg cgaacataga aggaacgata atcatacctc
    12541 caccaatgcc aaaaagtcca gaagcaatac ctgaaatgat tcctatgatt agataaggta
    12601 aatctgtgat ttccatagct tttcctaaaa aatattaaat atttcaaata cggaataatt
    12661 ttatcttatt aagctaagta ttatcttagt tttttataac aatagaa
//
LOCUS       DAZAND010000052        12662 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.052, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000052 DAZAND010000000
VERSION     DAZAND010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12662
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.052"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(43..237)
                     /gene="rpmB"
                     /locus_tag="ACHDOB_001088"
     CDS             complement(43..237)
                     /gene="rpmB"
                     /locus_tag="ACHDOB_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HFN3326013.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            377..1024
                     /gene="rpe"
                     /locus_tag="ACHDOB_001089"
     CDS             377..1024
                     /gene="rpe"
                     /locus_tag="ACHDOB_001089"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HFN3326014.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFIDLFIPLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLVHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            1021..1782
                     /locus_tag="ACHDOB_001090"
     CDS             1021..1782
                     /locus_tag="ACHDOB_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HFN3326015.1"
                     /translation="MSSQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPENITELTGITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTARIKQK"
     regulatory      1804..1908
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1965..3257
                     /gene="thiC"
                     /locus_tag="ACHDOB_001091"
     CDS             1965..3257
                     /gene="thiC"
                     /locus_tag="ACHDOB_001091"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HFN3326016.1"
                     /translation="MKTQMNYAKEGVFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQIGAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGVQVMIEGPGHMAINEIEVN
                     MQLEKRLCKGAPFYVLGPLVTDIGAAYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     gene            complement(3249..3767)
                     /locus_tag="ACHDOB_001092"
     CDS             complement(3249..3767)
                     /locus_tag="ACHDOB_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326017.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKSKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPKKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(3757..4284)
                     /locus_tag="ACHDOB_001093"
     CDS             complement(3757..4284)
                     /locus_tag="ACHDOB_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326018.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDDEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            complement(4281..5240)
                     /locus_tag="ACHDOB_001094"
     CDS             complement(4281..5240)
                     /locus_tag="ACHDOB_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HFN3326019.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNIQKEKQPDDQILLYGFKQGHLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNDDTEVTLDNFNEALNNKF
                     DLLDQENNLETLDNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDINISAIDFLESETFLEIKTKQINTLDLMIELMQKELK"
     gene            complement(5242..5871)
                     /locus_tag="ACHDOB_001095"
     CDS             complement(5242..5871)
                     /locus_tag="ACHDOB_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFN3326020.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKASVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWEFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMEQFDKINLADQFKE"
     gene            complement(5855..7156)
                     /gene="miaB"
                     /locus_tag="ACHDOB_001096"
     CDS             complement(5855..7156)
                     /gene="miaB"
                     /locus_tag="ACHDOB_001096"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HFN3326021.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(7153..7395)
                     /locus_tag="ACHDOB_001097"
     CDS             complement(7153..7395)
                     /locus_tag="ACHDOB_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HP0268 family nuclease"
                     /protein_id="HFN3326022.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            7522..8610
                     /gene="nusA"
                     /locus_tag="ACHDOB_001098"
     CDS             7522..8610
                     /gene="nusA"
                     /locus_tag="ACHDOB_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HFN3326023.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVAKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(8626..9813)
                     /locus_tag="ACHDOB_001099"
     CDS             complement(8626..9813)
                     /locus_tag="ACHDOB_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3326024.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLNMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCMLILIGISFLVRLSIPDFHQKTQSRFFIMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGFGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIDLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            9888..10934
                     /locus_tag="ACHDOB_001100"
     CDS             9888..10934
                     /locus_tag="ACHDOB_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HFN3326025.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYRRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIDKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            10934..12154
                     /locus_tag="ACHDOB_001101"
     CDS             10934..12154
                     /locus_tag="ACHDOB_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M16 family metallopeptidase"
                     /protein_id="HFN3326026.1"
                     /translation="MQYLESRGVKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKTLQKLKINALGELASKNSNFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELSK
                     NIKDEILVRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSIAFNEFYQGLNLGYYKEELKLMEKVKLETINAYIKKHQ
                     ELLNISFASIQNEN"
     gene            12144..>12662
                     /locus_tag="ACHDOB_001102"
     CDS             12144..>12662
                     /locus_tag="ACHDOB_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HFN3326027.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGVCKVGKELIFNAKLS
                     RFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLKESGIEDKYIH
                     FLLNLHAYDEKSF"
BASE COUNT         4455 a         1716 c         2098 g         4393 t
ORIGIN      
        1 tttaaattgg aaattttaaa attgaggaat aaatcctcaa aattatttag aattttgttt
       61 ttttagagtt cttagagtag aagctgcgat tctcattttt ctcgtggtgc catcttctaa
      121 agttacacga actgttctga gattaggtaa aaagcgtctt tttgttttat tgttagcatg
      181 gctgacatta ttacccacca ttggaccctt gcctgtgatt tgacatactc ttgccatttt
      241 cttgtcctta tgaaaatttt taaatggaga ttttatcaaa attaagctta aaatattcca
      301 taatttatag tttttttaat atataagtcg ataaaatatt atttatcaca tttatatata
      361 ctttaaggtt ttgatcatgt atgtagctcc aagtttattg tctgcaaatt ttttgaaatt
      421 agaagaagaa gttaaagcta ttgaagctgc aggtgcagat cttttacata ttgatgtaat
      481 ggatggacac tttgttccaa atttgacttt tggaccttgc gtgatcgaaa aaatttcaac
      541 tattagtaag ttgccattag atgtgcattt gatggttaaa gatgtaagta aatttataga
      601 tctttttatc cctttgaaac caaaattcat ttcttttcat atggaaagcg aagttcatcc
      661 tataagactt tgtgaatata taagaagtca aggaatccat cctgctattg ttttaaatcc
      721 gcacactcct attgattcta ttaaacacat gctagaattt gtagatatgg tacttttaat
      781 gagtgttaat cctggatttg gtggacaaaa atttttacct ttggtacatg aaaaaatcaa
      841 agaattgcgc caaatgattg ataaaaaaaa tgctaaagtt tttatagagg ttgatggtgg
      901 tgttaatggt ttaaatgcta gcgatttaga ggaatccgga gctgatattt tggtggctgg
      961 aagttatatt ttttcttcta atgattataa aactgcaatt tcatctttaa agcttgaatt
     1021 ttgagttcac agcaaattga tcagattatt tctatattaa ataagcaaag caagccttat
     1081 gattgggtga tgcaagagtt tgccaaagtt gaagaattaa aaaattttga tttagatttg
     1141 gaaacttttg agcttttggg tttgggctta actttgaata aagataatat ttttaccctt
     1201 aaaacacgca caacaaaaat taaagatgaa attttttgta tagtagatat agaaagtact
     1261 ggcggcgtaa gtaaggggga aattttagaa attggagcag taaaaattca aaattctaaa
     1321 gaaattggac gctttcaaag ttttgttaaa gtaaaagaaa ttccagaaaa tataaccgaa
     1381 cttacgggta ttacttatga gatggtggaa aatgctccaa gtttagcaaa ggttttaagt
     1441 gattttaggc tttttttaaa agacagtatt tttgtagcgc ataatgtgcg ttttgattat
     1501 agttttattt ctaaggcttt aaatgagtgt ggttttggca ttttgcttaa tcgtcgtatt
     1561 tgcactatag aatttgcaca atgttgtata gaaagtccaa aatataaact agaggttttg
     1621 aaagaatttc tgggcgtgga aaatacgcat catagggctt tagatgatgc tttggcagct
     1681 gctgaaattt ttaaatattg ccttggaaaa cttccttatc atataaaaac tacagaagaa
     1741 cttataaatt ttacaaaaac tgcacgcata aagcaaaaat aaatatttaa agtgtataat
     1801 taaaacataa atgacgggag cttgtgtaac aggctgagag taagctaaaa gcttagaccg
     1861 aaccggatct ggataatgcc agcgtcggga agatttataa atttcaatac tttaaaaatt
     1921 tatactcacc cttcatttat ccaaattttt taaaggataa atttatgaaa actcaaatga
     1981 attatgccaa agaaggtgtt tttactaaag aaatgcagat tgttgcacaa aaagaaaatt
     2041 taagtaaaga ttttttgctt gaaaatattg cttgcggtaa aattattatc cctgcaaata
     2101 ttaatcataa aagtcttgat ccaaatggta taggttttgg actgcgtact aaggttaatg
     2161 taaatttagg agtttcaaat gattgcgttg attatagcga ggaaatgaaa aaagtagagc
     2221 tcgctcataa atttgacata gaagcgatta tggacttaag caattatggc aaaacaagtc
     2281 gttttagaga cgagcttgtt aatgtttcaa aagctatgat aggaacagtt cctgtatatg
     2341 atgcggtagg atttttagaa aaagatttaa aacaaattgg tgctaaagac tttttagatg
     2401 ttgtatatca tcatgctaaa agtggggttg attttatgac aattcatgca ggtattaatt
     2461 ctcgcgcagc gcatattttt aaacaaagta aaagacttac aaatatagtt tcaagaggag
     2521 gctctgtgct ttatgcttgg atgatgatga aagatgctga aaatcctttt tttgagtatt
     2581 atgatgattt gcttgacatt tgtttaaaat acgatgtaac tttatctttg ggcgatgctt
     2641 tgcgtcctgg ctctactcac gatgcaagtg atggggcgca aatttcagag cttatagaat
     2701 tatcgcttct tacccaaagg gcttgggatg ttggggttca agtaatgata gaaggtccag
     2761 ggcatatggc tattaatgaa atagaggtaa atatgcaatt agaaaagcgt ttatgcaaag
     2821 gagcgccttt ttatgtctta ggacctttgg taacagatat tggtgcagcg tatgatcata
     2881 ttagtggtgc tattggagga gctgtggctg cagctagcgg tgctgatatg ctgtgttatg
     2941 taacacctgc tgaacactta agacttccaa atttagaaga tgttagagag ggtatagttg
     3001 cgactaaaat tgcagctcat gcgggagata tagctaaact tccaaaagaa agagcaagag
     3061 atgatgagat gagtaaggct agacaagaga tagattggga gaaaatgttt aaacttgcta
     3121 ttgatggaga aaaggctaaa aaaatgttta atgagcgtcg ccctgatgat ttaaactcat
     3181 gttccatgtg tggaaaaatg tgtgcaatga atactatgaa tcaaatttta aaaggcgaag
     3241 atgtgagttt agcttgaata aactttgaga gtaagatcta tagagatacc ttgctctcct
     3301 gctttaagat taagtggata atcaagcttg attaaattat tatagttttt tagagcatca
     3361 ataaaatcat aaagtcttct aggattgttc attgtcgctt taatggctaa gcggtttttt
     3421 agatattttt cttgtttttt gggcttagtt tcttgaattt ttacattttg aaaatatttt
     3481 tgtaaaaaaa tatcaaaatt tcctatatta aaattttgct caaattgctc taaacttttg
     3541 ttgttttcgc ttcttagagt tgatatttta tcttcactaa agtcaaattt tgatttagcg
     3601 gcttttaaga tagcaagttg tgagttttct ctaagatttg cttgtttgta gttttttaat
     3661 gtcggtaaaa gtaaaaataa gatcaaggct gtgcaaacgc ttataaaact taacgcgcaa
     3721 atgataagct ttaataaatc aatttcttct agacttttat ctttcatctg caactcctgg
     3781 aatttgttta ctaatactaa caaaacgata ccacccatta tctaagcgat aataggttgt
     3841 atagctttga tcaaagatgc tttttaaagg ggtttctaaa agtagagtaa acatttctct
     3901 tgtaggagtg actccgataa gttttaagga atattcgtct tgttcaacac tttcaagagt
     3961 aatattatca gtttttacaa taatatcaaa tagatttctt aagctttctt taacaatttg
     4021 attttgagtg ttaaaatttt tcgctatttg gctttgatca aataaaattt cataaagcat
     4081 ttcattttgc ttagtttgat tttgaagcac tataacttgt tgtttttcat catcgataga
     4141 gctattgatt aatgcaattt ttattgtata tgtaaaatat actagcaaga taaataatat
     4201 actaaaacca aaaagtccta gccaaatttt atcaaagagt gtgaaaatag gtttttttct
     4261 tggctgtatg aagctataag tcatttaagc tccttttgca tcaattctat cataagatct
     4321 aaggtgttga tttgtttcgt ttttatctct aaaaaagttt cactttctaa aaaatcaata
     4381 gcacttatgt taatatctga ttcgctatat aataaaatac cattgataaa taccccagca
     4441 tatttatcat cattgtaaaa tttttcaatg ctcgtaataa tataacggca aagttccata
     4501 tcattgctaa attgatttaa ttcatcaaga ttaaaattat cattattatc caaagtttca
     4561 agattatttt cttgatcaag tagatcaaat ttattattta aggcttcatt gaagttatct
     4621 aaggtaactt cagtatcatc gttgttgttt tcaatttctt gattatcttc tgatggaagt
     4681 tcaagctcta aacctaattc ttgctcaaat attttaaaat caccgtataa aatagtattg
     4741 cctttagcaa caataattgc caaaagatgt ccttgtttaa atccataaag taaaatttga
     4801 tcatcaggct gtttttcttt ttgtatattg tagtaaagaa gggcaaaagg ggaatataaa
     4861 aaatctaaac ctctatattc ttcaaaaagc tcgctataat attccacatg ttcggtagcc
     4921 gtataaacaa gggcattatt aaataaaata tgctgtaagc tgatttttcc tatattaaag
     4981 tgctcacaat cttgaatatt tgtactaggt attaatcctt gttctttggc gtctaaaaat
     5041 aaagcagtgt ggtaaaataa gaaatgcttg cttaaatttt ttatgtattc taataaattt
     5101 tcacttttat caaaagtttt ttcattgcta ctgattagtt tatttcctct gtaaatagaa
     5161 gcttttacaa tatttttttt atcttctaaa ataatactaa taaaaagttg tggaaatatt
     5221 tttttaagta aaaataacat ttcattcctt aaattgatca gctaagttaa ttttatcaaa
     5281 ttgttccatt agaaattctt tagctttttc tttatctaaa gataaaatat ccaaaggttc
     5341 acttagacta taagtaatct tactaaaagg ttttggcaag atcatcttat cccaactttt
     5401 aaattcccaa aaacgatttg cttcatagtt taaaattctt atctttagtt cttttttttg
     5461 agccaaaatg atagaaccat ctgaaatact atgataaggc ccacgtggac catcaggcgt
     5521 gataactata tcgtcatttt gttctaaaac tttaaatgca gctctaagtg cactgctagc
     5581 accccttgaa gtgcttcctc ttacagtatc aagaccgaaa agcttgatga tttttgcaat
     5641 ttgttctcca tctttatggt gggagatcat gacataggct tttttatttt tttgtctata
     5701 atgtctaaac gcaaaaggca tgagtgctaa ttttccatgc caaaaaagta tcacactagc
     5761 tttacggtca actttttcac ctttatagtg ctttttacag cttaaaaaaa taagccattg
     5821 caagatgaaa attatatatg ttaagcaatg gattttaaac gatttcccca tataaaacca
     5881 tacgctttgc attagtgatt tttacttctt taaattgccc taaaagttct tcgctacctt
     5941 caacttgaac taaaaaatta ttatctgttc ttccagcaat gctattgcct gctcttaatt
     6001 cttcaaataa aactttaaaa gttttatttt cttgtttttt tacaatttca tctaaaattt
     6061 cactatgacg attttgtaag gtgctaagtc ttcttgaagc tgtttcttca tcgatttgat
     6121 taggcatggt tgcggctttt gttaaagggc gtttggagta tttaaaagaa aaaatttgtt
     6181 caaaacgcac tttttccaaa acatccatag tttcttcaaa atctttttca ctttcccctg
     6241 gaaaagctac aataatgtct gtagaaatgc taacatttgg acaaagttct ctaagtttta
     6301 aagctctatt taaataccat tctttagtat agccacgttt catggctttt aaaatttcac
     6361 ttgaaccgct ttgtaaaggc atatgcatgg atttgcaaac ttttggatta ttggcaaaaa
     6421 cttctaaaaa tttatcatcc atgtgcaaag gatgtggact tgtaaagcga atgcgttcca
     6481 aaccttctat agtgctaagt tcttctaaaa gatctgaaaa gtccattttt ttatgttcgt
     6541 ttctaaatct tttgccgtag ttattgacat tttgtcctag caagaaaatc tctttagcgc
     6601 ctttttcaac ggctttttga gcttctttgt agatgatgtt aaaaggtatg gaaatttcat
     6661 ctcctctagt atgtggcact atacaataag tgcagtgttt atcacaacct atggagatat
     6721 taatatagga tttataaata ctatttctaa aatctgcaaa agcaaattca ctttcatcat
     6781 agtctatgtc cacccccata aattttggag tttttatagc ttgagtgatt ttggaaatat
     6841 ttcttgcccc tagaacaaaa tccacataag gagcacgttt gaaaatttca tttcccaaat
     6901 gtgatgcagt gcatccacaa actcctattt tagcaccttc ttttttaact ttttcaaagc
     6961 cacccacttc tgagaaaagt ttatgcacag gtttttcacg cactgaacag gtattgataa
     7021 gaataagatc tgcttctttg atatcttctg ttagtgcgta attttctttt tgtgttaatt
     7081 ctgcgatcat atgctcagaa tctctgacat tcatcgcaca acctaaagtt tggataaaaa
     7141 gttttttagc actcaaagaa tatgtacctc atacataaaa tcattatcat caagtccgta
     7201 ttttacggtt ctatgataaa tgcttactcc ttttttttca aaatgattta caagggcaat
     7261 gagttgtttg tgtgtattat ctttatcaaa ataaaaaaac ttttgtcctt ctttttctat
     7321 agcctcttcg attttttcta ggctaatatt tttaggtttt tcattaatca aagttcttgc
     7381 caattttaat tccatagcta aatccttaag aattttcatt ttaatctata attttagcaa
     7441 attttacttt taattaaact tattaaggat ataattttta tctacatttt taaatttccc
     7501 acaaaaaagg ttttataaaa tatggaaaag atagcagata ttatcgaatc tattgctaat
     7561 gaaaaaaatt taaacttaga gaatgtaaga gaaaaggtag ctaccgcttt aatcaatact
     7621 gcaaaaagaa tttatggaca agaatatgag ttttttgtgg atcctaaaaa tttaaatctt
     7681 tatcaaaaaa ttaccatagt agcagataat gacgaaagat tgcaaaataa aagtgagagt
     7741 tttatcgcgt taagtaaggc aaaatcagaa gctccagatg ttgaaatagg agatgaatta
     7801 acctatgaat gttctttgga aaatttagga agaactgcgg taaatacctt gcataaagaa
     7861 cttgaatatc atatacaaaa attattagaa caaactattt ttgaaaaata taaaaacaaa
     7921 gtagggcaaa tggtttttgg tacagttgtt agagtggata atgaagaaaa tacttttatt
     7981 gaaatagatg aattaagagc ttttttaccg agaaaaaatc gcattaaagg ggaaaagttt
     8041 aaaataggtg atgtggcaaa agctgtgata cgccgtgttt atacagataa gggtattaaa
     8101 atcgagctta gtcgtacaag tcctaaattt ttagaatgtt tacttgaagc tgaggttcca
     8161 gaaatcaaag atggttatgt caatattata ggatgtgcta gaattccagg tgaaagagca
     8221 aaaatcattc ttcaggccaa tggagcaaat atcgatcctg taggtgctac agtaggtgtt
     8281 aaaggtgtaa gaattaatgc agtaagcaaa gagcttcata atgaaaatat tgattgtata
     8341 gaatttacaa atgagagtga aattttaatt tctcgtgcct tggctcctgc tattgtaaat
     8401 tctgtaaaaa ttgaagataa aaaagctatt gtaagtttaa atagcgaaca aaaaagcaaa
     8461 gctataggaa aaaatggtat taatattcgc cttgcttcta tgttaagtgg ttatgaaata
     8521 gagctcaatg aattaagctc atcgcagcta aataatgcca tcagtaatga agaagcaatg
     8581 aaaaatcttc aagatttatt taaaatttaa aatatttgtg aattttcaca aatatttttt
     8641 ataaaaccac ttccaataaa atgccgcaaa gataaaaatc atacccaata agcctgtaat
     8701 cagttctaaa ctcaggtcta tttcaaacaa aaagcccata agcattgaaa taatagcact
     8761 aaaactaaga taaatcatat ctgtataagc gatcacccta ccatgatatt ctttgtcggc
     8821 atttttttgt atcatagtgt aggtataagc ccaaagcgct gaggtaaaaa aacctgcacc
     8881 aattaatcct aaaaaagaaa tataaaaatt aaattgagtt aaagcccaaa gtataatacc
     8941 aaaaccttga ccaagataca tgtaaaataa atttttatca ttgataaatt tgcttaaaac
     9001 cataggtcct atagccaaag aacaagcacg taccgcattt aaaaacccta ttactaaagc
     9061 agcagataaa acttctttat attgatgttg cgctaaaagc gtaactaagg tttcataagc
     9121 agttaaacct ataaaagcgt gaagcaagat aagatgaaaa attattttat tatttaaaac
     9181 atagaaaaat ccttctttta tcatgataaa aaagcgactt tgtgtttttt gatgaaaatc
     9241 aggaatgctt aatcttacta aaaaagaaat gcctatgagt ataagcatgc agtcaaataa
     9301 aaaagcggtt ttaactccta gaaaataaat aaaaattccc gcacttgcca tacctgctgt
     9361 ataagaaatc gcccaaatga cactgtgcat ttcattagcg agtttaagtt cttgaggggt
     9421 taaaattttc gccaataaac tcatttcagc ttgaaaataa atcgaagcaa cacaaagtct
     9481 tatgaaaatt aaaataaata aaagccaaag catactaaga cttgtgacaa aaataagaca
     9541 aaaaatagaa attaattcta tactaatcat attgagtaaa agttttttag gtttattttt
     9601 ctctactatg acgccattaa taggagcaag caaaactcca ggtaaaaaag caagcatagc
     9661 acttgtagct gttgcccaag taggagcatt aagctcaacc aaaagggtaa aaactcctgt
     9721 ttgagaaaac catgctccaa aatatactat aaactgaacc gaagctaata ttctgatatt
     9781 tttattattt tttaatagtt caatgtaatt cataagcgaa actatagcat aatttatatt
     9841 ttaaatgcta taattatttt aatttatgca aaaaacaagg aaaaattttg aaaagactgg
     9901 ataaaaaaga agctttagat ttattacatc atgcaagttt aacagagctt ggagaaatgg
     9961 cttatagaag aaaattagaa cttcatcctg aaaaaatcac tacttttgtt gtagatagaa
    10021 atattaacta tactaatgtt tgttgtattg attgttcttt ttgtgctttt tatcgtcatc
    10081 ataaagaaga tgatgcttat attttaagtt ttgaagaaat agataaaaag atagaggagc
    10141 ttgaagctat tgggggtaca caaattcttt ttcaaggcgg ggtgcatcca aaattaaaaa
    10201 tagaatggta tgaagaatta gtttcttgga taaaagaaca ttatccaaat atcactgtac
    10261 atggtttttc agcggttgaa atcgcttata ttgcaaaagc atctaaaatt tcaattactg
    10321 aagtgcttca aagattacaa gctaagggtt tattttctat accaggagca ggtgctgagg
    10381 tgctaagcga tagggtgcgt gatatcattg cacccaataa atgtgataca gctacttggt
    10441 tagaagtaca tcgccaagct cataaaatcg gtatgaaaag tacagctact atgatgtttg
    10501 gaacggttga aaatgatgaa gaaatcatcg atcattttga acatttaaga aaattacaag
    10561 atgaaacagg tggttttaga gcttttattt tatggagttt tcaaagtgat aatactgctt
    10621 taatccaaaa acatccagag attatgaaac aaagttctaa caagtattta agacttttag
    10681 ctttagcaag actttattta gataatttta aaaatttaca aagttcttgg gtaactcaag
    10741 gctcgcttat aggtcaactt gctttaaaat ttggggctaa tgatttaggc tcaaccatga
    10801 tggaagaaaa tgtagtaagt gctgcaggag caagttatag aatgaatcaa gatgagatga
    10861 taaggctgat tagaagttta ggcgaaaatc cagctaaacg caataccgct tatgaaattt
    10921 tagaaaggtt ttaatgcagt atttagagag taggggtgtt aaaatccctt ttatttttga
    10981 aaaaaattct gattttccta ttgttgtttt aaagcttgtt tttagaaatt gcgctagaag
    11041 ttatgatgaa atagcaggtt tggctaaaat gttttcacgc attttaaatg aaggcgtgga
    11101 tgataaattt tttaaggatt tagaatttag agcgataaat ttagaggcaa gtagtggttt
    11161 tgaaagtttg gaaatcaatc tttcttgctt gaaagaaaat tttgattttg ctttaaagag
    11221 tttagaaaaa ttgcttttaa aaccaagaat agaagaaaaa actttgcaaa aattaaaaat
    11281 caatgcctta ggtgagctcg cgagtaaaaa tagtaatttt gattatttag caaaaaattt
    11341 actcaatgct caaattttta aatgtaaaga atttcaaagt ccaaatgatg gagatgaaaa
    11401 aagtatagaa actttgtctt taaaagattt gcaaaatttt tataaaaatt ttatccatct
    11461 tagtgatttg gttgtgattt taggaggaga tttagaagaa aaacaagcca aggaagatct
    11521 tttaaaactc ttatcaaaac ttcaaatagg taaaaaaaat actccaaaaa aatatgagtt
    11581 aagcaaaaac atcaaagatg aaattttggt acgcccagaa agtgaacaag cttatattta
    11641 ttttgctacg cctttttttg ctgattttaa agataaggat ttatatcttg caaaaattgc
    11701 tttatttgtt ctagggcaag gaggatttgg ttcaaggatt atggaagaaa ttcgcgttaa
    11761 aagaggtctt gcatactcag cttatgctat gcttgatatg aatatgtctt tttctagagt
    11821 ttttggatat ttacaaacta aaaatgaaag cgctaaagaa gctaagaaaa tcgtaaaaga
    11881 gctctttgaa gattttataa aaaatggcat gactcaaaac gaacttgatc aagctaaaaa
    11941 ttttctcata ggatcaactc ctttgcgtta tgaaagctta agtaagcgtt tatctatagc
    12001 ctttaatgaa ttttatcaag gtttaaattt gggatactat aaagaagaat taaaacttat
    12061 ggaaaaggtt aagcttgaaa ccataaatgc ttatattaaa aaacatcaag aacttttaaa
    12121 tataagtttt gcaagcatac aaaatgaaaa ttaaagaaag tgattttgaa ttttttaaaa
    12181 aattaaaaat tagaagtgct attgatttag cgcttctttt acctaaaaaa attgaaaatt
    12241 taaatccaag taaaaatccc aaagaaaatg aaatttgcac ccaaaaaatc actataaaaa
    12301 gcgttagttc aagaaaaaat caactttttg gtttaggttt ttgtgaagaa tggcaagaaa
    12361 atatttcttt tgtatttttt catcctagag cttggcattt tggggtttgc aaggtaggaa
    12421 aagagcttat ttttaatgct aaactctcgc gttttaatca cacttggcaa tttaacaatc
    12481 ctaaaatttt aacttctttt gagggtttta gtccaaagta tcaaatttta ggtttaaaag
    12541 atacaaaaat tgccgctttt atacataaat atcttaatta tgaaaattta aaagaaagtg
    12601 gcatagagga taaatatata cattttcttt taaatttaca tgcttatgat gaaaaaagtt
    12661 tt
//
LOCUS       DAZAND010000053        12310 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.053, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000053 DAZAND010000000
VERSION     DAZAND010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12310
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.053"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(60..1067)
                     /gene="ansA"
                     /locus_tag="ACHDOB_001103"
     CDS             complement(60..1067)
                     /gene="ansA"
                     /locus_tag="ACHDOB_001103"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004067 - asparaginase activity [Evidence
                     IEA];
                     GO_process: GO:0006528 - asparagine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HFN3326028.1"
                     /translation="MGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGYTAGAIDIDVL
                     IKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDGVVITHGTDTM
                     EETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKEAKNKGVMVAI
                     NDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHTKNAPFDVSKL
                     TSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKDVLKELLKKGL
                     KVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTKTSDPKKIQEYFLK
                     Y"
     gene            complement(1151..2722)
                     /gene="recJ"
                     /locus_tag="ACHDOB_001104"
     CDS             complement(1151..2722)
                     /gene="recJ"
                     /locus_tag="ACHDOB_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008409 - 5'-3' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HFN3326029.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2709..4340)
                     /gene="pyrG"
                     /locus_tag="ACHDOB_001105"
     CDS             complement(2709..4340)
                     /gene="pyrG"
                     /locus_tag="ACHDOB_001105"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HFN3326030.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYTRENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4460..5083
                     /gene="thyX"
                     /locus_tag="ACHDOB_001106"
     CDS             4460..5083
                     /gene="thyX"
                     /locus_tag="ACHDOB_001106"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HFN3326031.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            5203..6588
                     /locus_tag="ACHDOB_001107"
     CDS             5203..6588
                     /locus_tag="ACHDOB_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HFN3326032.1"
                     /translation="MDKQFFQDFLMLSQAHTIATLAILCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAEEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIRVIIEIDKNIKIFSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIHEG
                     DKQIREIQTFSNIILGLIPSNIIAAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLTGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(6627..8996)
                     /gene="nrdA"
                     /locus_tag="ACHDOB_001108"
     CDS             complement(6627..8996)
                     /gene="nrdA"
                     /locus_tag="ACHDOB_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HFN3326033.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(9012..10340)
                     /gene="purB"
                     /locus_tag="ACHDOB_001109"
     CDS             complement(9012..10340)
                     /gene="purB"
                     /locus_tag="ACHDOB_001109"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HFN3326034.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEVIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ILHAKELLEHAKEVVSYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDVIFKRTFK"
     gene            10418..11320
                     /locus_tag="ACHDOB_001110"
     CDS             10418..11320
                     /locus_tag="ACHDOB_001110"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFN3326035.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNEILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGKIE
                     ENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKEQIESILDEKLTPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFNINSKINIKEIFNNSIK"
     gene            11433..>12310
                     /locus_tag="ACHDOB_001111"
     CDS             11433..>12310
                     /locus_tag="ACHDOB_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HFN3326036.1"
                     /translation="MKFVNFIQGQKPNLGVLNSSGKIVSFDDLGIETNDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATAPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNGELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
BASE COUNT         4114 a         2299 c         1655 g         4242 t
ORIGIN      
        1 attgaaaggc ttgacttagg gaagataagt tccctaagtt tagaaatatt taaaaaattt
       61 taatatttta aaaaatactc ttgaattttt ttaggatcac ttgtttttgt aagtgctaat
      121 ataagcaaaa ctcttgcttt ttgaggattt aaatcttcag cactaataaa acctaatttt
      181 tcatctgaat cactcacagc aacacaacct gctacaaccc ttgaacttac aacaacctta
      241 agcccttttt ttaaaagctc ttttaaaaca tctttttgat ttttgtgtat acttcctgct
      301 ccacttcctg caacaactat gcccttagtt ccatgttcaa ataaagcttt tgcagcgaca
      361 ccactaccat catttgaata gctataaaga atatctactt ttggcaaact tgtgagtttg
      421 cttacatcaa aaggagcgtt ttttgtgtga gctttagtaa cattattata gaaaaagact
      481 ttaccatcta ctatataacc caaatcccca aaatcaggag aagagaaagc atcaacattt
      541 aaactatgag tttttactac gcctctagcg cttaaaattt tatcatttat agctaccata
      601 acacccttat tcttagcttc tttattggca actaatgcca ctgcattata aagatttttc
      661 ggaccatccg cacttatagc agttgatgga cgcatagcgc caactagaac tacgggctta
      721 tcacttttaa tggttaaatt taaaaaataa gcagtttctt ccatagtatc agtaccatga
      781 gttatcacca caccgtctat cccctcagca aaaagcttag caattttttt agcaagcctt
      841 aaccaaattt catcacacat atttgaacta tcaatatttg ctatttgctc ccaactaata
      901 tctgctaaat ctctaatttg cggaactgct ttaattaata catctatatc aatggctccg
      961 gccgtatatc ctgttgtagc aatagtgcta tcaatgaagc ctgctatcgt tccgcctgtt
     1021 cctaaaatag caatccttga tttagctttt ttcatacata ctcctataaa aagacaacat
     1081 ataaataatt ttttaatctc ttgtatatta attttttaat gttattaatg caaattataa
     1141 gtaaaaattt ttataaaatc tctttaacaa caaactgtgg agttaccatt cccctaaatt
     1201 cattcttaga aatacttcca agcaaagaaa tattttgatt caattctggc tctttatcaa
     1261 aattaaaaaa taaagcttct atggttttat tttccttagt taaaacaagc tttaagtgtt
     1321 tttcatcttt acctagaagt tttttatttt ttacacaaag attttctaaa acaaaaaaag
     1381 gtcgtggatt tttatgtcca aaaggttcaa aagattctaa aatttcaagc atttcaaaat
     1441 caatttcgct aggttctaag attcctaaaa tttcatctgt atccaaaaat tcactttcag
     1501 aaatttgcga acattctttt ttgattttat ttttaaattg ttcaaaattt tcagagttta
     1561 aactgattcc agcagcacct ttatgaccac cataattgct taatatagaa tttgtcttag
     1621 aaattaaagc taaaatatca atcttgccaa cacttcttgc gctgcctttt aagtgttctt
     1681 cattttgaga aaatacaaaa gcaggtttat taaaatgttt agctaaacga cttgccacaa
     1741 tccctaaaac accttcatgc caatttaaac ccgataccac aatacaagaa tcgttttcat
     1801 cgatttgatt taaactatct tcaaaaagct gtttttcttc atctttacga ctttcattaa
     1861 aactaacaat ttgctctaga tattctaaag ctttattaaa atctttagtg tgtaaaaatt
     1921 cataagaaat acttgcatca tccattcttc cagcactatt tataagcgga gcaattaaaa
     1981 atcctatatt atcaagagca aatttatcct tttgataata atgcttaata gccctaaaag
     2041 cagccctttt agatttgtta atatgatcta tgccacgcct tactaaagca cgatttaaat
     2101 ctctaagttc catcatatct gcaacaattg caatcgccaa aagttctaaa aatttacaca
     2161 tgtcatattt aagcttgcac acctctttta aagccgctat caaataccat gcgacttgag
     2221 ctccacaaat ttcaatttct ggaaaatcac aatctttttg ctttggattg ataatggcaa
     2281 aagcatcagg taaaacatct tgaggcatat gatgatcagt gataatcaaa tctatatttt
     2341 tttctttaca gagtttggct gcttcaagag cagctattcc attatctact gttattatta
     2401 aatttacatc aagttcgttg atgatctcag catttaatcc atatccatct ttaaaacgat
     2461 ttggaattct tataatataa tcaaaaccta tatcatcgaa aaattctgcc ataataacac
     2521 aagaaatgat tccatcaaca tcataatctc ctactatggc gactttctca tttttttcta
     2581 cagcttcttt gatgcgatta gctgctttat atgcatcctt taaacagcat ggcaaaggca
     2641 gatcacaaag tttggtatgc aaatcttttt caaagcgtga agccaaaatt tttttaattt
     2701 catttttatt aattatcttc atagtttata gctgccttga taaaactgca aatcacagga
     2761 ttaacatgct caagtcttga tgtaaattct ggatgaaact gcacagccaa gaaaaaagga
     2821 tgacagttaa gctcaactgc ttcaatcaat cctttgcttt caccacttac aatcaaaccg
     2881 tgtttttcaa aatctgctct atattttgga tttgcttcat agcgatgacg atggcgttct
     2941 tttacactct ttacttcatt ataaacctta gccaaaaggg atttttcctt gatatcacat
     3001 ttataagccc ctaaacgcat agttccacct aaaggagttt ttgcagtacg aatttgtttt
     3061 tctccatttg tatccataaa ttcatcaatc aaataaacca caggattttg gcatttttca
     3121 ttaaattcac ttgaatttgc atctttaagt tttaatacat ttctagcaaa ttccaccaaa
     3181 gcaagctgca tacctaaaca aattcctaaa aaaggaattt tattttctct tgtgtattga
     3241 atggctttta tcttaccttc tacaccacga tatccaaatc ccccagcaac caaaattcca
     3301 ctcacatctt taaatacttc agaactttcc atattttcaa gtttttcact atctacccat
     3361 tttaactcca ctttagtatc tagggctgca cctgcgtgta taatagcttc agtaaggctt
     3421 ttataacttt cttttaaatc cacatatttg cctacaaaag cgattttaac ttcattgctt
     3481 ggagctataa ctctttttac caaagagtcc caattttcca tattaggttt taaatttttc
     3541 aaatccaaaa tttcagcaat agggcttaaa atatcttgct ttaaaaaatt aagtggaatt
     3601 tgataaatac tagccgcatc aacactttct atcacgcaat ttttttccac cccgcaagaa
     3661 atagcaattt tatcttttaa atctctatca agagcttttt cactacgaca aataatcata
     3721 tcaggactaa tgcctatgcg ccttaactcg cctacactat gttgagttgg ctttgttttt
     3781 aattcccctg cagccttaat aaaaggtact agagtaagat gaatattcat agcattattt
     3841 ttacccactt ccaaacgcaa agcacgaata gcttctaaaa aaggcaagcc ttctatatcc
     3901 ccaacagttc cgcctatttc aacgataagt atatctttgc cttctcctgc ttttttaatg
     3961 cgatctttga tttctcctac tatatgaggg ataacttgaa tggttttgcc aagatattct
     4021 ccacgccttt ctttttcaat cacactttga taaacccgtc ctgtagtaaa gttattatct
     4081 tgagataaac tctcatccaa aaaacgctca taatgcccca aatcaagatc cgtttctgct
     4141 ccatcatcag ttacaaaaac ctctccatgc tcaaaaggac tcatagtgcc tggatcgaca
     4201 ttgatataag gatcagcttt taaaatactc actttaagcc ctgaattttt taaaagtgtt
     4261 gcgatagaag cagcggctat ccctttaccc aaagaactta aaactccacc tgttacaaaa
     4321 atatattttg tttgtttcat tgataataag ccttattttt ttatctaatt atagcttgat
     4381 aaaacttttt atttcattag aattttaagt aaaaaatgca agaattacaa aaaatatttt
     4441 tatcaaaaaa ggaataagca tgcaaatcac tttacttttt cacactccat tatctgtttg
     4501 ttctcatgca acaagaactt gttggcaaag ctttgaaaaa ggcgattgcg gtggcgaaaa
     4561 agataaagaa cttatcgatc gcgtgggcaa caaattcaaa cacgcttcaa ccttagaaca
     4621 tctaaactat actttttata tacaaggaat ttcaagagct tgcttacaag aagttgcaag
     4681 acaccgtcac actagtccta gtgtaaaaag cacgcgttat accttaaaag aacttcgcaa
     4741 tgaagctgaa tttaaaatag gagattttga aaatgcaagc cgttatcttg tgctttgtgg
     4801 caatgaagag gttgataacg caagcattaa agccttagaa aatttacgca ctattttaca
     4861 aaaaagcatt agtctagata tagccaaata ctgcttacca gaaagctata aaactgaact
     4921 tacactaacg attaatgcaa gaagtttgca gaatttcatt tctttgcgta gttcaaaatc
     4981 agctctttgg gagattagaa atttagcaaa tgctttattt gaagccttgc cacaagaaca
     5041 caaatttata tttgaacatt gcttacataa agatatagaa taaatcatac taactttatc
     5101 ttatttaaaa tattgttatg ctaccattta taaaatcaag ctttacgcaa gtatattttc
     5161 atataccttg tgcttgatta tagtttctta taaggacttt ttatggataa acaatttttt
     5221 caagattttc taatgctttc acaagctcat actatagcta ctcttgctat actttgtgtt
     5281 gttttttacg cattaaaaaa aatgcgggat ataaaaatca atttttctct tcgcatgcta
     5341 tttgcgcttt taatgggttt ggggtttggt tttgctttgc aatatttggc aaattttcca
     5401 gatgctgaag aagcaagcaa tattctttgg tatagtgaaa caaaacattg gtttgcattt
     5461 gtaagttctg tttttgtagc ttttataaaa atgctagttg ttcctcttgt aagcatttgc
     5521 attataagag taattataga aattgataaa aatatcaaaa tattctcctt gcttggaata
     5581 agtctttttt ggatactctt tagcacagcc atagctgcaa ccttgggtat atttttaggt
     5641 tatagttttg atttaggaag taattttgcc atacatgaag gagataaaca aattcgcgaa
     5701 attcaaactt tttcaaatat tatactaggg ctaataccta gcaacatcat tgcagctatt
     5761 aataaagaaa atattatagc tattgtcatt ttttcttttt ttataggaat tagtgctaaa
     5821 aaaatttcta aaaaagaaga gtatgaacaa gcctttaaaa gttttcataa ttttatccta
     5881 accttttata atattatgat gaacatgact gctacagtca ttagatttat gccttatgct
     5941 gtagtttgta tgatggctaa tgtgctttta agcaatggtt ttgaagctat caaaacagct
     6001 ggacttttta taatgcttat ttatatagct atgttaataa tgttcggggt gcatttttta
     6061 cttcttgctt cacaagggct aaaccctata aaatatgcaa aaaaagcatt tcctgtatgg
     6121 ttatttgcat ttagctcaag atcttctttg ggcactttgc ctatgactac ttcaactttg
     6181 caaaataaat ttggagttaa ttcagctata gctaattttg tagcatctat aggtacaaca
     6241 acaggactta atggttgtgc gggatatttt ccagctttag cggcagtttt tgtagctttt
     6301 gctacacata cacatattga ttttacattt gctttaatga tagttttggt agctgttatt
     6361 ggatccttgg gtatagctgg agtacctgga agtgcaacta tggcagcttc tattatgcta
     6421 acagggattg gatttggtaa taattttgtc atgctaagtt tgattttagc tatagatcct
     6481 attatagata tggcaagaac agcaagcaat gtctcaggag ctatgacttc ggcactttgt
     6541 actgcaaaaa atctaaaagc cctagataaa gaaatttaca attcttaatc ttttaaaacc
     6601 caatgttttt cattgggttt tagtatttat tggcaacctt cacattctat gctacgatct
     6661 gcaacattga ctttttcact atcagggctt tcgcttctta gataataagt agattttact
     6721 ccgagctccc aagcgagttg ataaatttca tttaaatatc ccccacttgc tttatcaagc
     6781 gataaaaaga tatttaaact ctgcccttga tcgatccatt taccacgcac agcagcagcc
     6841 tttacaagaa ttttttgatc aagttcgtag gctggagtat agtattgcca agtatcaagg
     6901 cttaaatttg gcacaacaac aggtatcatg ccacttaaat tttgttcaaa ccactttctt
     6961 ttgtaaacag gttctatagt ctgcgtagta cccaccaaaa tagaaataga agaagtaggt
     7021 gcaatggcca tcaaataacc atttctcata ccatcttttt taactttttc tctaagttta
     7081 acccagtcgc attcactttg atcaaataag ccctctctta aagttaaagc tttagcctta
     7141 ggacttgcta catcaatagg aaaaatcccc ttgctccaat ttgatccttc aaaatcttca
     7201 taagaacctt tttcaagagc taaatttgaa ctcgcattaa tagcctcaaa gctaatttgt
     7261 tccataatct catcgatttt atttaaatgc tcatcgcttc cccaataaat cttagcctca
     7321 gcaagcattt gtgcctcacc catgactcca agacctatgg cacgagattt taaatttgta
     7381 tcttttactt ttctatgagg ataaaaattt aaatctatca cattatcaag catacgaata
     7441 gccgttggca caacacgctc tatatcttct ttagtataca ctttgctaag atttatactt
     7501 gctaaattac aaacggctgt ttttccatca tttttatatt tttccactat ataaacttta
     7561 ttaccatcaa tactatctaa agttgagatt tttttggctg gtttttcata tcccccatcg
     7621 atcacaactt tttgttcttc atcaaaatga agctcatctc cattttcaaa aactactttg
     7681 atttgataat aatttggctc ggtattttga aaaatttcag tacataaatt tgaacttcta
     7741 ataattccta catgagcatt tggatttgct ctgttagcac tatccttaaa acataaaaat
     7801 ggcaagcctg tttcaaaata atttagcaaa attttcttcc aaagctcttt agcttctacg
     7861 atttctttgg taatgctttc atctttttca tattcttcat agcgtttttc aaaagcttca
     7921 ccatataaat cacacaaatc cgccgtatcc gcaggatcaa aaagagtcca tttatcatta
     7981 gctcttactc tcttcataaa aagatcattg atccataaag cagggaaaag ttcatgagca
     8041 cggcgtcttt cttcacctga atttttacgc aaatcaataa aatcacttat atccatgtgc
     8101 caaggttcta tataaacagc tatagctcct tttctggttc ctagctgatc tactgccacg
     8161 gcaatatcat tagtaatttt caagaaaggt ataatccctc ctgcggcatt tttatgccca
     8221 tctatgcttc cacccatagc acgcacttta gaccaatccc aacctatacc gccaccaaat
     8281 ttagaaagca aagccatttc ttggtaagaa tcaaaaatac cttcaatatt atcaggggtt
     8341 gatcctatat aacaagaact aagctgatgg cgcgttgttc ttgcattaga taaagtcgga
     8401 gttgcaagca tgagttcaaa tttagaaatt aaatcataaa atttcttcgc ccattcttga
     8461 ggattaaatt cattctgcgc taaaaacatc gcaatggcca taaacatttg ttgaggaagt
     8521 tctataggca tacctttact atctttaatc aagtatctat catataaagt tttaatacca
     8581 agataagtaa attgcatatc gcgttcaggt ttaatataag catttaaatc atctaaatca
     8641 tatttttctt taagaccaag taagattctt ccttcttttt cgcccttttc aaaatactca
     8701 cgcaaatgat tatagcgatt cataccatta acttttttat ataaatcaaa taaaaaaagt
     8761 ctagctgcaa caaaggtcca atttggacaa tcaatatcta tcttatctac tgcagtttta
     8821 attaaagttt tttgaatttc ttcagttgaa attccatcac gaaattgaat ctttgcatcg
     8881 agttcaagtt cgcttaaatt cacaccttct aaatctttta cagcatcaga ggtgcatttt
     8941 ttgatcttag aaacatccaa ttcttctgta cgaccatttc ttttaataac tttcattgcc
     9001 ttccttgctt tttatttaaa tgttctttta aaaattacat caacattttt tgtatagtag
     9061 ttataatcga aacattttct tacatcctct tcgctcaaac tttttcttaa atcttcatcg
     9121 cttaaaagcg ctaacaaaaa caaactttca tttttttcat tgatagcagc cttaccattt
     9181 tgcaaatctg cccaaacttt catagcgttt ctttgaacta ttttataagc ttcttcacga
     9241 ctaatgcctt taaatggaag ctctaaaagc accctccctg aaaatacaag cccacctgta
     9301 agatttaaat ttttcatcat attttcagga taaactaaaa gcttatcaat caaatttgta
     9361 agacgcataa gcataaaatc agccgtgata aaagcatcag gcaaaataaa tctttcaaca
     9421 ctagaatgag atatatctct ttcatgccaa agtgcaacat tttctaaagc tggagttaca
     9481 aaagatctaa gcacacgaca aagccctgtg atattttcac ttaaaacagg atttctttta
     9541 tgtggcatag ctgaacttcc tttttgtcct acactaaaat actcttcagc ctcataaact
     9601 tcagttcttt gaaaatgtct tatcgctaca gcgatttgct cacaacttga agctaaaatt
     9661 gcaatagcag aaataacttg agcataacga tctctttgga tcacttgatt tgaaacaggg
     9721 gcagctttaa gacctaaatt tttacaaact tcttcttcaa attctaaagg agcatgagca
     9781 aaatttccca ttgcaccact gatttttcca tagcttacca cttcttttgc atgttctaaa
     9841 agctcttttg catgcaaaat ttcatcatac caaatagcta acactaaacc aaaagtgata
     9901 ggctctccat gaattccatg acttcttcct accattaagg tatttttatg ctccaaagca
     9961 cgctttttga tcacttctaa aagcaaagaa acatcttcta aaataagctc caaactctct
    10021 tttatctgta aagcaacagc cgtatctata caatcagaac ttgtcattgc ataatgcaca
    10081 aaacgactct cttctcccaa actttcactt acacttgtaa gaaaagctat aacatcatgt
    10141 tttgtggttt tttctatttc gtctattctt gcaatatcaa attttgcatt tttaagaatt
    10201 ttttcgcagt ctgtgtcatt aatgagaccg agtttattcc aagcttttac agcggctaat
    10261 tctactttta accacgcatc gtattttgct tgcatgtccc attttttagc catgatttct
    10321 ctgctatatc tttcaaccat ctttgaaacc tttttagcta taattttata ttttaaaaaa
    10381 cagaaattat atcaaattat cctaagaaag ttattaaatg gcttacataa aaataaaact
    10441 ctcaaataat ggaaaaaagg catttcaagt ccttatggaa aatttaaaaa ttagcataaa
    10501 tgaagcacaa aaactcatag acaaaaaaag acttttttgt gatggaattt tagtagaaga
    10561 aaagaatgaa attttaaatg gtttagtaga gcttatagtc tatgaaaaca atcccaaagg
    10621 agtagaaatt gtctttgaaa atgaagactt tgccatactt gaaaaagaaa gtgggatctt
    10681 aagtcatcca aatggtagac attgtaaata cagtcttagt gatgaaattt ggcatctttg
    10741 gggaaaagaa gcttgcgtag cacacagact tgataaagaa acgagcggac ttatacttgt
    10801 agccaaaaat aaaaaagctc aaattgatct taaagctttg tttgaaaaaa aactggttca
    10861 aaaagaatac cttgctctag ctaacggaaa aatagaagaa aattttataa ttgataaagc
    10921 cataaattta gccaaaaact acgatgatgt aaaaacaagg atgcaaattt gtaaggaagg
    10981 aaaacaagct atcactgagt ttgaaatttt agaatacttt cctaaaatca acgctactct
    11041 tttactctgc aaacccttaa caggcagaca acaccaaata agagtgcatt tacactataa
    11101 aaaccatacc attttaggcg atccacttta tgggcttagc aaagaacaaa tcgaaagtat
    11161 tttagatgaa aaattaaccc ccaaagaacg cttaaaactt acaggtgcct tgcgtttgtg
    11221 tttgcattct tatcgtttga aatttcaata taaaaatcaa aattttaata tcaactcaaa
    11281 aataaacata aaagaaattt tcaacaattc tataaaataa aatgatgttt cactacgcta
    11341 caatcaatca cttttttacc aaattttaaa acaaaaaaat aattcttgct aaaactttaa
    11401 gtataattaa ataaaaaagc gagattttcc aaatgaaatt tgttaatttt atacagggtc
    11461 aaaaacccaa tctaggagta ctaaattcta gtggaaaaat tgtaagtttt gatgatcttg
    11521 gcattgaaac taatgatatg aatgaattta ttatccattt tgataaattt aaacacaaac
    11581 ttacagactt ggattctaaa atagcctatg aaattccaca agaaaattat ctagccccta
    11641 ttatagaacc tcgccaagat attatatgtc ttgggattaa ttttttagat catgccaaag
    11701 aatctgccaa atttaagggt gaaaaatttg aagaaagaga atatcctgta tattttggaa
    11761 aacgctgcaa tcaagctacg gcaccttttg gcgatatacc tttacatgca gatgtaactt
    11821 ctcagcttga ttatgaatgt gagcttgcat ttattttaag taaagatgct tataaaatca
    11881 aagctaaaga tgcaaaagat tatatctttg gctatactat tatcaatgaa atttcagctc
    11941 gcgaacttca aaaacgccac aaacaattct accgagcaaa aagtcttgaa ggtagcacta
    12001 taatgggacc ttatatcaca agcgtagatg aaatttctta tcctcctaaa ctccaacttc
    12061 aaagctatgt caatggtgaa ctacgccaaa actctaacac tcaattgttt atttttgata
    12121 ttgcttatgt cttagaagaa cttagtgcag gcatgctttt aaaagctgga agtattatat
    12181 ctatgggaac tcctagtgga gtaggtatgg ggttaaatcc acctactttt ttaaaatcag
    12241 gagataaagt acgctgtgta atagaaaatt taggagaact ttgtaataaa ataaaaaata
    12301 tcaattatta
//
LOCUS       DAZAND010000054        11781 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.054, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000054 DAZAND010000000
VERSION     DAZAND010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11781)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11781)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11781
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.054"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            2..682
                     /gene="ung"
                     /locus_tag="ACHDOB_001112"
     CDS             2..682
                     /gene="ung"
                     /locus_tag="ACHDOB_001112"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HFN3326037.1"
                     /translation="MNIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQNIIIYP
                     PANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNVFKELQ
                     NDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHKLSNEK
                     SGLVFMLWGNYAKNKEILIDNAKHLILKAAHPSPLARTGFLGCKHFSKANEFLKKVGK
                     IPIDWKIV"
     gene            802..1497
                     /locus_tag="ACHDOB_001113"
     CDS             802..1497
                     /locus_tag="ACHDOB_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HFN3326038.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKILIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIINKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
     gene            complement(1691..2815)
                     /gene="cydB"
                     /locus_tag="ACHDOB_001114"
     CDS             complement(1691..2815)
                     /gene="cydB"
                     /locus_tag="ACHDOB_001114"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016682 - oxidoreductase activity, acting
                     on diphenols and related substances as donors, oxygen as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HFN3326039.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAILLAIGVILVLLGMVQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLNDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(2815..4377)
                     /locus_tag="ACHDOB_001115"
     CDS             complement(2815..4377)
                     /locus_tag="ACHDOB_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HFN3326040.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQNFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMENHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIILTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            complement(4378..4611)
                     /locus_tag="ACHDOB_001116"
     CDS             complement(4378..4611)
                     /locus_tag="ACHDOB_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HFN3326041.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            4725..5531
                     /gene="cdtA"
                     /locus_tag="ACHDOB_001117"
     CDS             4725..5531
                     /gene="cdtA"
                     /locus_tag="ACHDOB_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HFN3326042.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAVNGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            5528..6325
                     /gene="cdtB"
                     /locus_tag="ACHDOB_001118"
     CDS             5528..6325
                     /gene="cdtB"
                     /locus_tag="ACHDOB_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HFN3326043.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRTQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            6336..6905
                     /gene="cdtC"
                     /locus_tag="ACHDOB_001119"
     CDS             6336..6905
                     /gene="cdtC"
                     /locus_tag="ACHDOB_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HFN3326044.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPNFFAEVNELMIITPPLTAATPLE"
     gene            7077..8759
                     /locus_tag="ACHDOB_001120"
     CDS             7077..8759
                     /locus_tag="ACHDOB_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008028 - monocarboxylic acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015718 - monocarboxylic acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactate permease LctP family transporter"
                     /protein_id="HFN3326045.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGVKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTIFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIICIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSVTGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWATLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIVLIGIWTCIIAFFLQGIIPEVIVK"
     gene            8879..9619
                     /locus_tag="ACHDOB_001121"
     CDS             8879..9619
                     /locus_tag="ACHDOB_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HFN3326046.1"
                     /translation="MMKKVYFYATCLGTAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKV
                     KDFSSRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            9616..11055
                     /locus_tag="ACHDOB_001122"
     CDS             9616..11055
                     /locus_tag="ACHDOB_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LutB/LldF family L-lactate oxidation iron-sulfur
                     protein"
                     /protein_id="HFN3326047.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANKVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWAVQNFANVLPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            11048..11704
                     /locus_tag="ACHDOB_001123"
     CDS             11048..11704
                     /locus_tag="ACHDOB_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HFN3326048.1"
                     /translation="MSKIDEISSKSKASILEHLKKAYKETDFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYGFKSMIYGADLNLDLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCVVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
BASE COUNT         4222 a         1852 c         1912 g         3795 t
ORIGIN      
        1 aataaacata gataagatta aaataaatga tgactggaaa gaatttttaa gagacgaatt
       61 tcaaaaaaaa tattttctag aaatcaaaaa acaataccta aatgcgatta atcaaaatat
      121 aattatttat ccacctgcaa atttaatctt taatgctttt aatttatgtc ctttaaaaga
      181 aattaaaatt attatcctag gacaagatcc ttatcatcaa ccaaatcaag caatggggct
      241 tagtttttcg gttccaaaaa atgtaaaaat cccaccaagt cttaataatg tttttaaaga
      301 attgcaaaat gatttaaaca tcaccccagc aaaaagcgga gatttaagct cttgggcaaa
      361 acaaggagtt ttgctcttaa attctattct tagcgttgaa gcaaataaag cagctagcca
      421 tagttcgtgg ggttggcaag aatttagtga tgctataata cataaattaa gcaatgaaaa
      481 atcagggctt gtttttatgc tttggggaaa ttacgcaaaa aacaaggaga ttttgattga
      541 taatgctaag catttgattt taaaagcagc ccacccaagc cctttagcta gaacaggatt
      601 tttaggttgt aagcattttt caaaggctaa tgaattttta aaaaaagttg gtaaaattcc
      661 tatagattgg aaaatagttt aaaaaattat tttaaatttt aataaaaata ttaaaatata
      721 tttatttatt taaaaataaa tcatatttct atgaaatata ttgtaataaa ataactcaaa
      781 aattaattct taaggagaaa aatgaaaacc attggtatta taggcggaat gagttttgaa
      841 agcactatta cttattataa aacaataaat caagctataa atgataaatt aaaatcttta
      901 aattctgcaa aaattttact ttacagtgtt aattttgaag aaatagaaaa tttacaaagc
      961 caagataaat ggcaagaagc tgcacaaatt ttgactcaat gtgctaaaaa attagaactt
     1021 gcaggggcta attttataat aattgcaact aatactatgc ataaggtttt tgatgaaatt
     1081 caacaaaata taaatatccc tattttgcat attgcaaaaa gttctgctaa ggctttaaaa
     1141 caagaaaaca tacaaaaaat tggtttattg ggtactaaat acacaatgac gcaggatttt
     1201 tataaaaaaa tactgattga agaaaatatt agcgttatta ctcctagtga tgaagatata
     1261 aaaatcgtta atgatattat ttttaatgag ctttgcaaag gtgaaatcaa gcaagattct
     1321 aaagaaaaat atttaaatat tataaataaa ctacaagaaa aaggggcaaa gggagtactt
     1381 ttagcttgca ctgaaattgg tttattaata tccaaaaatg atacaaatat caaaattttt
     1441 gatacaagcc ttattcacgc ccttgatgct gccaatgaag ctttaaaaga tttatgatta
     1501 aaagatgctc aaaaatgggc aaattgcaat attttgaaaa gatttatact tatatcggtt
     1561 taaatcttat cttgctttat agtttgctat ctttttctaa ttgattgata tttagcatta
     1621 taaatttata gcttagataa attactaaag gccaagccaa taaaaacaaa gcatgtaaca
     1681 ttttttctcc ttaatatgcg tgatcatcgt ttgcgatttc ttcgcgtgtg atttttactt
     1741 tatccattgc attccaaaca tagataatat aagctaaaac aaaaggtaca agtaaagata
     1801 cataagccat gacgcttaga gtataatagc ttgaacttgc attttttaaa gttaaagaac
     1861 tttgcaaatc atttaaagat gggtaaaaag cactttgacc taaaccaatg cttgataata
     1921 aagcaaaaac cgttaaaacc gttccaagtc ctagggtaaa aatagcttta gagcaacctt
     1981 ttgctccttg aaccatacct aaaagcacta aaatcacacc gatagcaagc aagatagcaa
     2041 aaatcatttg atttaagaaa ttatataaat acaaattcgc actcatgctt acaactccat
     2101 tggcatctac gctaaaacca tcttttaaaa aaatccacgc taaaaaacct aagaaaaaag
     2161 gtaaaaataa aatactattg atcataagtt ttttcatagc tcttattttg atattctcat
     2221 cattgatatt gttcataaaa tacgctgcgc ctaaaagtct tgctaaaaat actaaagcta
     2281 agcctaagag ataattaaaa ggattgagta aaagttctaa gccgtgcaaa gggttttgcc
     2341 aagaaacaaa attatgctca tttaagataa attcagaacc gctaaaaaag ctacttactg
     2401 caactccgat taaaaataca cctaaataac cattgatttt aagaaaaatt tcataggttt
     2461 tagagccata aacattattt tcttttttac gatactcata agccacagct tgtaaaataa
     2521 aacaaaataa aatacaaagc caagcccaat aagctccgcc aaaacttgta ctataaaaaa
     2581 gtggaaaagc tgcaaaagct gctccgccaa aaagcacgag agttgtaaaa ccaagctccc
     2641 atttacgccc taaagaattg actagcatgg ttttttcaag ctcatccttg ctaagctcat
     2701 cgattaaagt ctgtccacct tggacaaaaa acataaaaac caaaagtccg ccgagcaaac
     2761 ttaaaatcaa ccaccaataa atttgcaaac cttcaagttc taaaccaaaa aacattattt
     2821 ttctcctttg cccataagtg gagtatgtcc tgcatgtgcg tcaaaacctt ttttaatctg
     2881 agtaagtatg attttaactt ctgcaatcaa taaggctgta aaaagtactg caaaaatcca
     2941 aaatgaaatt tgaacattga cttttccaag ttgtgttgct gcgatatgta cgggaagtaa
     3001 gtcttgaatt gcccaaggtt gtctgcctac ttcagcaaca atccagcctg cttcagcggc
     3061 gatataaccc aatggaatgg ataacaaaca cacccaaagt acttttctaa atttctcaat
     3121 atcatttgcc atagtaagat aaagtgtaac gatgaaaagt aaaaagaaaa aacttcctaa
     3181 agcaaccatg atgtgaaagc tataaaaagt taaagccaca ggcggaatag tatcacttgg
     3241 tttttctaaa tatccataac caaaatcttt aaaatgagtt tctaaaatgg atttgtgatt
     3301 ttccatagct attgtatcat tgttttcttt agcaagttta tagtctttta gagcttgtat
     3361 agcgattttt cctctatcga tacgattttg cataggttct atacctttac tttcatttcc
     3421 atagatcaaa tcttcaattc ctggaacaaa agaatttgga tcacggtttc ctagtataga
     3481 aagagcgtaa ggtatagtaa tgtcaaataa aaacacactt tcgttattat ctatggtttt
     3541 tttaggattt aaaattccaa aaggcacaag ccctgcacga tgttcacctt gataaacccc
     3601 ttccatagct gcaagtttca taggttgagt ttgagttaca cgataagcac tttcatctcc
     3661 actgaaaaat aaaaagattg aacaaaccaa accaaaacta gctcctacaa ctaagctttt
     3721 tttagcctcg ataatatggc gtccctttaa cataaaccaa gctgaaattc ccattacaaa
     3781 taaagctgaa atcacataac cactgcctat ggtatgtaaa aattttgaaa tagctacagg
     3841 agaaagcgct acttcaaaaa agttttgcat ttcatttctt gctgtatcag ggttaaagct
     3901 cattcctaca ggatattgca tccaaccatt tgccactaaa atccaaaaag cagaaagatt
     3961 gcttcctata gccacacacc aagttgaaag taagtgaaaa cccttactta ctttatccca
     4021 gccaaaaaac ataactgcaa aaaaagtagc ctctaagaaa aatgccataa taccttcaac
     4081 cgccaaaggt gcaccaaaaa tatcgcccac aaaccagcta taatttgccc agtttgttcc
     4141 aaattcaaat tccattataa tacctgtagc tacaccgata gcaaaattta tggcaaataa
     4201 tgaaagccaa aatttggtga tttttttcca tctttcattt ttggttttta catagatggt
     4261 ttccatgata gcaatcataa aagacaagcc taaggttaaa ggcacaaaca aaaaatgata
     4321 aagtgcagtt aaagcaaact gcgctcttga ccaatcaacg ctactaagtt cgttcattta
     4381 ttttccttcg agtgtaagat ttttgagtac aaaagtgctt ttttctttgt cgcttttaaa
     4441 aatagaatta aaatttacat caaaaacaaa aagttttaaa atcacaaaca taacaaaaag
     4501 tttgataaag ataattttcc aaagagtttt tccaagagtt aaatttttaa aaccttcttt
     4561 gtaaaaatta aaaatttgag agatactaaa atataagtgt ttaagataca tgataattct
     4621 acctttaaaa acaacaaaaa taaaacattt ttaaaaagcg aaaaattata atgaaattta
     4681 tgttattatt ttcttaaaaa tttaaataca tatcaaggtt tttaatgcaa aaaattatag
     4741 tttttatttt atgttgtttt atgacttttt ttctttatgc atgttcttct aaatttgaaa
     4801 atgtaaatcc tttggggcgt tcatttggag aatttgaaga tactgatcct ttaaaactag
     4861 gacttgaacc tacttttcct accaatcaag aaattccaag tttaattagc ggtgctgatt
     4921 tagtacctat tactcctatt accccacctt taactagaac aagcaatagt gccaacaata
     4981 atgcagtaaa tgggatcaat cctcgcttta aagacgaagc ttttaatgat gttttaattt
     5041 ttgaaaatcg ccctgcggtt tctgattttt taaccatttt aggccctagc ggagcagctt
     5101 taacggtttg ggctttagca caaggaaatt ggatttgggg ctatacttta atcgatagta
     5161 aaggatttgg cgatgctaga gtttggcaac ttttgcttta tcctaatgat tttgcaatga
     5221 ttaaaaatgc caaaaccaat acttgtctta atgcttatgg taatggaatt gtccattatc
     5281 cttgcgatgc aagcaatcac gcacaaatgt ggaaacttat ccctatgagc aatacagcgg
     5341 ttcaaattaa aaatttagga aatggaaaat gcatacaagc acctattaca aatctttatg
     5401 gtgattttca caaggttttt aaaattttta ccgtagagtg tgcaaaaaaa gataattttg
     5461 atcaacaatg gtttttaacc actccgcctt ttaccgcaaa acctttatat cgccaaggag
     5521 aggtacgatg aaaaaaatta tatgtttatt tttatctttt aaccttgctt ttgcaaattt
     5581 agaaaatttt aatgttggca cttggaattt gcaaggctca tccgcagcca cagaaagcaa
     5641 atggagtgtt agcgtaagac aacttgtaag tggagcaaac cccttagata tcttaatgat
     5701 acaagaagca ggaactttac caagaacagc cactccaaca ggacgccatg tgcaacaagg
     5761 tggaacacct attgatgaat atgagtggaa tttgggaact ctttcaaggc ctgatagggt
     5821 ttttatttat tattctcgcg ttgatgtagg agctaatcgt gtaaatttag ctatagtttc
     5881 aagaacgcaa gctgaagaag tgattgtttt acctccacct actacagttt caagacctat
     5941 tataggaatt cgcaatggaa atgatgcttt tttcaatatc catgctttag ccaatggagg
     6001 aacagatgta ggagcaatta tcacagctgt agatgcacat tttgcaaata tgcctcaagt
     6061 taactggatg atagcagggg attttaaccg tgatccttct actataacaa gtacagtgga
     6121 tagagaatta gcaaatagaa ttagagtggt ttttccaact agtgcaactc aagcaagcgg
     6181 agggactctt gattatgcaa ttacaggaaa ttcaaacaga caacaaacct atactccacc
     6241 gcttttagct gcgattttaa tgcttgcaag tttaagatct catatagttt cggatcattt
     6301 tccagtaaat tttagaaaat tttaggacat ttaatatgaa aaaaattatt actttgtttt
     6361 ttatgtttat aactttagcc tttgcaactc ctactggaga tttgaaagat tttaccgaaa
     6421 tggtttctat aagaagctta gaaacgggaa tttttttaag cgcctttagg gatacctcaa
     6481 aagatcctat tgatcaaaat tggaatatta aagaaattgt tttaagcgac gagttaaaac
     6541 aaaaagataa attagctgat gaacttcctt ttggttatgt gcaatttaca aatccaaagg
     6601 aaagcgatct ttgtttggct atcttagaag atggaacctt tggagcaaaa tcttgtcaag
     6661 atgatctaaa agatggtaaa ttagaaactg tattttctat aatgccaaca acaacttcag
     6721 ctgtgcaaat tcgttcttta gttttggaat ctgatgaatg tatagtaact ttttttaatc
     6781 caaatattcc tatacaaaaa cgctttggaa tagccccttg caccctagat cctaattttt
     6841 ttgctgaagt aaatgaacta atgattataa ccccaccttt aacagctgct acccctttag
     6901 aataagattt ttatcttgtt ctatttttat atttatttaa tatttatgat attactaaaa
     6961 tacacaaaat aattaataac aatacaatgt aatttacttt gctctataat ttttttattt
     7021 taatttaatt ttttgttaca ataaatttat acataataat tatcaaggag gaaaaattgg
     7081 aacaaatttt aacatggcaa caaatttatg accctttttc aaacatttgg ctaagtgctt
     7141 tagtagcatt tttacctata ctatgttttt tagtttgttt ggttgtttta aaacttaaag
     7201 gctatcaagc aggtttttta actgttatac ttgctacttt ggtagcttta tttgcctata
     7261 aaatgccttg gaatttggtg ggtgcaagtt ttattcaagg ctttacaaat ggtatgtggc
     7321 ctatagcttg gattatcatc gcggcaatct ttctttacaa actttctatc aagtcaggtt
     7381 cttttgaaat cattaaaaaa agcgtgatga gtattactcc agatcataga attcaagtga
     7441 ttttaatagg tttttgtttt ggttcatttt tagagggtgc tataggtttt ggtggtcctg
     7501 tggctataac tgctgcactt ttagtaggac ttggcttgcg tcctttgcaa gctgcagggc
     7561 tttgtcttat cgcaaatact gctcctgttg cttttggtgc ggtgggaatt cctattattg
     7621 ctatggcaaa tcttgttggc atagaacagc attcagtttc tgccatggta ggtagaatgc
     7681 tagttccttt aagccttact ataccttttt tcatagtttt tttaatggat ggatttaaag
     7741 gcgttaaaga aacttttcca gctattttag ttgcggcgct aagttttaca actactcaat
     7801 ttttaagctc aaatcactta ggagcggaat tgcctgatat tatttcagct gtggtttctt
     7861 tagcggttac aactatattt ttaaaatttt ggaaaccaaa aaatattttt agatttgata
     7921 atgaaagcaa tttcactcaa gataacaccc taagttttaa tcaaatttta aaagcttggt
     7981 caccttttat tttactcatt atttgtatta tcatttggac acaaccttgg tttaaagctc
     8041 tttttgataa agatggtatt ttaagttata caagcattac tttacaattt agtaatatca
     8101 caactggaat tttaagtcct tcagttactg gcataggaga agctaagcct ttatctttgg
     8161 ccttgggtgt agatttaatc aatggaaaaa ccgtagctca agcaggaaca gcaattttac
     8221 ttgccgcttt tctaactata gctattttaa aaatcaaagc cgaagatgct gcagaatgct
     8281 tttgggctac tttaaaagaa atggccatac cttgtatcac tataggttta gttgtggctt
     8341 ttgctttcat ttctaaaaat agcggtatga gcactacctt agggcttgct tttgcacaca
     8401 caggcgatgc tttttctttc ttttcaccaa tcattggttg gataggggta tttttaacag
     8461 gctctgatac aagtgctaat ttactttttg gaaccttgca acaagtaagc gctcaaaaac
     8521 taggtattag tgaagcttta tttttagcag ctaattcagt aggtggagtc gttggaaaga
     8581 tgatcagtcc gcaaagcatt gctatagctt gcgcggcggt tggacttgta ggaaaagaat
     8641 ctgatctttt caaattcaca ttaaaatatt ctgtagcttt tattgtttta ataggaattt
     8701 ggacttgcat tatagctttt ttcttacaag gaatcatccc tgaagttata gtgaaataat
     8761 taaaaattta agttttattt caacaaatat tcgtttttag aatatttgtt ggaaatttta
     8821 ctttgctttt atttttacag gattagaata tttatcctaa attatcccaa aaggagagat
     8881 gatgaaaaag gtgtattttt acgccacatg cttaggaact gctgctatgc aacaaagcgt
     8941 tttaaatgca ataaaacttt taaggcgtga aggtattgaa gtgattttta aaaaaaatca
     9001 aacctgttgt gctcaacctt cttttaactc aggttatttc gatgaaagtc gtgagattgc
     9061 tttatataat gtagatttat ttgataaaga ttatcccatc gttgtgccaa gtggttcttg
     9121 tgcgggtatg atgagtcatg actataaaga actttttaaa aacagacctg aattttctaa
     9181 agtcaaagat tttagctcta gggttataga actttcacaa taccttgatg aagttttaaa
     9241 agtagattat gaagataaag gtgcacctat aaaagtaact tggcattcta attgccatgc
     9301 tttaagagtg caaaaaagca tacaagcaag caagaatctt atcaaaaaac taaaaaatgt
     9361 agaattagta gaacttcaat acgaagaaga atgttgtggt tttggcggaa ctttttcagt
     9421 aaaagagcct gaaatttcaa atgctatggt aagaagtaaa attaaagata tacaaaatag
     9481 cggtgcaaaa tatctcatca gtggcgatgg aggttgtctt ttaaatatag atggtaccat
     9541 gaaaagaatg ggtttagata taaaaggcat acatttatat gactttttac ttaaacgctt
     9601 agaaggagaa agactatgag tcaaaaaatt cctcacgaac aaatcgttca aattaaactc
     9661 aatgacaagc aaatgcaaga aaatttaatg actgccatgc atactttaca aaaaaataga
     9721 ctcaatgtta ttgatgctag atttaaagac tggcagggtt taagagctaa agctaaacaa
     9781 gctaaaaaca atgccttaat gagtttagaa gaaaggcttt tagaatttga aaaaaatgct
     9841 acaaaaaatg gcattaaagt gcattgggca agtagtgatg aagatgcctg tgaaatcgtc
     9901 tatgaaatca tgaaagaaaa aaatattacc aagcttttaa aaggtaaatc tatggcaagc
     9961 gaagaaatag gcctaaatca ctacctagaa aaaaaaggtt taaaagctat agaaaccgat
    10021 cttggagagc ttattttaca gcttaatgaa gagcctcctt tacatatagt tgtacctgct
    10081 atacatagaa accgccatga aatcggagaa attttcaaag aaaaattagg agcaaattta
    10141 gaaaacgatg aacctgaaag tttaaatgcg gtagctagag aacatttaag aaaagatttt
    10201 gaaggcttaa aacttggact tagtggggtc aattttgcca tgtcaagaga aggagctttt
    10261 tggcttatag aaaatgaagg aaacggtaga atgtgcacta cagcacctga tattcatatc
    10321 gcactttgtg gcatagaaaa agtcatggaa agctttgaag atgcggctac tatggtttct
    10381 ttactcactc cttcagccac aggacaattt ataccaactt ataacaatat cattacaggc
    10441 cctagaaaaa atggggattt agatggccct aaagaagtac atgtgatttt atttgatcac
    10501 aatcgttcta aaatgctagc tcatgaggat tattacgaag ctttgcgttg tattcgatgc
    10561 ggggcttgta tgaatttttg ccctgtttat gatcaaatcg gcggacatgc ctatcaaacc
    10621 acttatccag gacctatagg agaagtaatc agtcctaata tttttggcat agatcataca
    10681 ggagatattt tgaatttctg ttcactttgt gggcgttgtt ctgaagtttg tccagtgcaa
    10741 attcctttgg ctgatcttat tcgcaaatta agatgcgata aaataggaca aggtaaaaat
    10801 ccacctttag gagcaaacaa agttcatcac aatgccctag aagcctttgc ttttaaacaa
    10861 tttaaaaata tcgcaaccaa tggcgataaa tggcgttttt cactttcaaa agcacattat
    10921 ttcaactggg cagtgcaaaa tttcgcaaac gttttgcctg tgattaaaaa atggtacgct
    10981 tttaaagaat tacctcaaat taaaatggat ctttataaag aagtgcaaaa actagaagga
    11041 gtaagctatg agtaaaatcg atgaaatttc aagcaaaagt aaagcaagta ttttagaaca
    11101 tcttaaaaaa gcttacaaag aaacagactt tacgcgtatt gaaagtatag atcctgtaga
    11161 acatatccaa accacccaag atatgcttac agaaatgaag caaaaaatga gcgataacaa
    11221 atacatcgtt gaaaatgcta caaaagatac cttagaagaa aaaatcaatg aaattgtcgc
    11281 aaaatatggc tttaaaagta tgatttatgg ggcggattta aatttagatt tagaacagat
    11341 caaggcagaa aagaagattt gctttgataa agaaatcgaa aatctaagat ctgaagtttt
    11401 tcatagtgat ttttccatca ttcacgcaag agcaggggta agctctcatg gagttgcact
    11461 tataccttca agtaaaaccc aacctagaat gctaagcctt gcacctaaac tttgcgtagt
    11521 attacttaaa aaagaaaatg ttgttaaaag tcttagcgaa gctttaaatt tagtaaaaaa
    11581 agaaaatgaa attttaccta ctaatatctt atttatagca gggccttcaa gaacagcaga
    11641 tatagaactt atcactgttt ttggtgttca tgggccacaa attgcacata ttattattta
    11701 ctgattctat actagaatca gtaagtctta atttttaata ttaattatat atatttttta
    11761 tactatacaa atataaataa a
//
LOCUS       DAZAND010000055        11553 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.055, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000055 DAZAND010000000
VERSION     DAZAND010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11553
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.055"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..742
                     /locus_tag="ACHDOB_001124"
     CDS             <1..742
                     /locus_tag="ACHDOB_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HFN3326049.1"
                     /translation="KGMFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKITLKNTQLAS
                     VISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSIKLNALTHKLNFV
                     FNLNSEALQMQEFDLFFLCEKITKNPGFERVVLQGKSTKVKADEFLIEQVIINLLSNA
                     LKYSQKEVILTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDAKSDNSFGLGLFLVKK
                     ILNIHKSYLEISSTLGYGSSFSFKLSQG"
     gene            746..2677
                     /gene="abc-f"
                     /locus_tag="ACHDOB_001125"
     CDS             746..2677
                     /gene="abc-f"
                     /locus_tag="ACHDOB_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protection-like ABC-F family protein"
                     /protein_id="HFN3326050.1"
                     /translation="MALIDLIEASKKFGDKIVLNEANFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRVIRQNGKSIAMLSQSVDFNANLSVKEAIKQELAEIYNALEEYE
                     ILHKKLEEDPSNKDYLKKIDTLMTLIDSKDAWNIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDCGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFTKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGDGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(2707..2781)
                     /locus_tag="ACHDOB_001126"
     tRNA            complement(2707..2781)
                     /locus_tag="ACHDOB_001126"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2747..2749),aa:Gly,seq:gcc)
     gene            complement(2792..2878)
                     /locus_tag="ACHDOB_001127"
     tRNA            complement(2792..2878)
                     /locus_tag="ACHDOB_001127"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2842..2844),aa:Leu,seq:caa)
     gene            3059..5308
                     /gene="flgL"
                     /locus_tag="ACHDOB_001128"
     CDS             3059..5308
                     /gene="flgL"
                     /locus_tag="ACHDOB_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HFN3326051.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNGLDPDKDFEYDDKLDFPPTTLYVQGTKPDGTSFKSAVLVKPEDTLE
                     DVMENIGALYGNTSNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDRAEL
                     TGIIDAAKQEGISMDEVTNRVMQAATAAPSNGDITKLNSPVTVTINNQQFTIDLKQTD
                     FIKSKMTDTDGNATNGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMAG
                     DSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPITHTDPATGNSG
                     VVTGSNDITYGQINDIIGMFAADKIPTQSITATNGKVDANGYNNLQQLMKDSQATVDV
                     SMDYKGRISVTDKLSSGTNIEISLSDSQSGHFPQPPFSTTSSVTNGPNFSFSANNSLV
                     IDEPNVDIIKDLDSMIDAVLKGNMRADSESEDPRNTGMQGALERLDHLADHISKLNTT
                     MGAYHNTIEDVNTRSTFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTI
                     SQLSLLNYM"
     gene            5418..8258
                     /locus_tag="ACHDOB_001129"
     CDS             5418..8258
                     /locus_tag="ACHDOB_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HFN3326052.1"
                     /translation="MLAPSMGEWVYKANLFLFGEFGYYYPFSLLILNYLYYKKNYKIE
                     NFKRRELFGFSLAFFSTLLLFSVFYRGFGYILEIVYGFFSIILGHTGSGIFALLLLLF
                     SLILLFPKFAKEILKIELDFTYLLKVEQAFKSLLMRVFGGENEKEDIGKSEPMVPKLN
                     ILQDNIYENSQINEKEKTNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVYEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSKQEVKPKIFTKELELRENLIKKEKLEQEYKA
                     YQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEESNKINENKNP
                     DKTDNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDDKKTNDQ
                     EIKLQKAVLAKEIAINQALLREIEQGEVEKPKDFTLPPLDFLANPKEHRQEINESEID
                     KKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAK
                     SIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFV
                     TDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIP
                     HLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGEEELPFIV
                     VIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSR
                     ISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDF
                     LKDQQSVEYDESFLKDQQSAGVTTNESFDGEVDELYEEAKRVILEDGKTSISYLQRRL
                     KIGYNRSANIIEQLTQNGVLSEPDAKGQREIL"
     gene            complement(8340..8612)
                     /gene="rpsO"
                     /locus_tag="ACHDOB_001130"
     CDS             complement(8340..8612)
                     /gene="rpsO"
                     /locus_tag="ACHDOB_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HFN3326053.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            8787..9197
                     /locus_tag="ACHDOB_001131"
     CDS             8787..9197
                     /locus_tag="ACHDOB_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HFN3326054.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            9184..11358
                     /gene="flhA"
                     /locus_tag="ACHDOB_001132"
     CDS             9184..11358
                     /gene="flhA"
                     /locus_tag="ACHDOB_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HFN3326055.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTAAPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKIKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            11367..>11553
                     /locus_tag="ACHDOB_001133"
     CDS             11367..>11553
                     /locus_tag="ACHDOB_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-to-5' oligoribonuclease B"
                     /protein_id="HFN3326056.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKNVRFYNSNYGKEINENFNS
                     IIGDIEKDENFGKAIILI"
BASE COUNT         4368 a         1549 c         1989 g         3647 t
ORIGIN      
        1 aaaaggaatg tttaaagaat ttaatttact aaatgagaaa cttttaaaaa ctaaggataa
       61 aattctaaag aatacccaaa aaaataaaaa acaaagcgat aaaattactt taaaaaatac
      121 tcagcttgct agtgtgattt ctgctatttc tcatgagctt aaaaatccat taagcgtgat
      181 tgatcttagc ttagagatgc taaaagatga gaaattggaa gataaaaaat taaaaaagga
      241 attactagaa aaaatttcgc gtcaaagtat taaacttaat gctttaaccc ataagcttaa
      301 ttttgttttt aatcttaata gtgaagcctt gcaaatgcaa gaatttgatc ttttttttct
      361 atgtgaaaaa atcactaaaa acccaggctt tgaaagagtt gtattgcaag gtaaaagcac
      421 gaaagttaag gctgatgaat ttttaatcga gcaagtgatt ataaatttgc tttctaatgc
      481 tttaaaatat agtcaaaaag aagtcatttt aacagcaaga gatcaaaaga taatagtgca
      541 agattttgga aaaggcatag aagaagataa aataaaattg attacaaaaa aattttataa
      601 aattgatgca aaaagcgata attcttttgg tttaggactt tttttagtaa agaaaatttt
      661 aaatatacat aaaagttatc ttgaaatttc tagcacttta ggctatggtt ctagttttag
      721 ctttaaactc agtcaaggat aaaaaatggc tcttatagat ttaattgaag cttcaaaaaa
      781 atttggagac aaaatagttt taaatgaagc aaattttagt gcaaacgagg gagaaaagat
      841 tgctattata gggaaaaatg gagaaggaaa atctactttt ttaaaaacgc ttttaggcac
      901 acttccttta gatagcggta gagtaataag acaaaatgga aaaagcatag ccatgctttc
      961 acaaagcgtt gattttaacg caaatttaag tgtaaaagaa gctatcaagc aagagcttgc
     1021 agaaatttac aatgctttag aagaatatga aatactgcat aaaaaattag aagaagatcc
     1081 tagtaataaa gattatctta aaaaaataga tacacttatg actttgattg atagtaaaga
     1141 tgcttggaat atagaatcta aaataatacg cgttttaaaa gaatttagtt tgcttgagta
     1201 tgaaaatcgc attatatcta ctttaagtgg cggagaaata cgccgcgttg ggctttgcat
     1261 acttttacta aaaaatcctg atattttatt gcttgatgaa ccaactaatc atttagatgt
     1321 atatatgaca agctttttgg aagaattgct aaaaaattca aagatgtgtg tgatttttat
     1381 ttcccatgat agatatttta ttgacgctat agcacacaag tgtgtagaag tagagcaggg
     1441 taaacttagt atttttaaag gcggatatgc aaactattta gagaaaaaaa cacaaatttt
     1501 acaaagcctt gctaagagcc atgaaactct tttaaagcaa ttaaaaagcg aagaagaatg
     1561 gcttagaaga ggggttaaag caagacttaa aagaaatgaa ggacgaaaag aacgcatttt
     1621 taaaatgcgt gaagaagcga aaaaaaatcc tggagcaatc aaacgcttaa aacttgaaat
     1681 ttcaagagcg gctttaaatt ttaatggaga aaaaacgatc aatcgtaaaa aaatgctttt
     1741 tgagcttaaa aatataagca aaaatataaa caataaaaat ctttttaaag atttttcaac
     1801 gcgtatttta caaggtgaac gtatagctat cgtaggaaga aatggttgcg ggaaatcaac
     1861 attgttaaaa attcttctag ggcaaataaa acaagattgc ggtgaaataa aacgcggaga
     1921 gcttaagata ggatattttg atcaggctag aagcttggta aattctgata aaagcttgct
     1981 tgaaattttt tgtcccaatg gtggagatag ggttgaagtt cgcggtaaaa atatgcatgt
     2041 ttatggatat ttgaaaaatt ttttatttcc taaggaattt ttagataaaa gcgtggctct
     2101 tttaagcggt ggagagaaaa atcgcgttgc tttagccttg ctttttacta aagaatatga
     2161 tgttttgatt ttagatgagc caactaatga tcttgatata gctacgatta atatattaga
     2221 agaatattta cttagttttg aaggggctat tttgctagta tcgcacgata gatactttgt
     2281 tgataaaatc gcaacaaaac tttatgcttt tgagggagat ggatatataa atattttaca
     2341 cactctttac actgaatatc ttgaaaatga aaaagaaatt gaagaattgg ataattttgc
     2401 tttagaactt caaacccaag agcaaaataa taaccaaaaa gaaaaaagct ctaaaaaatt
     2461 aagctacaaa gaaaatgaga tattaaaaaa ccatcctgaa aaaatagatt ttttagagca
     2521 aaagatagct aaattaaatc aagatttatc cgatccaaat gtatatcaag aaataggtat
     2581 taacaagctt tatcaagaac ttgaagtaat gcaaaaagaa cttgaaattc tagaaaatga
     2641 gtatttttta gtattagaga aaagcgagaa tttataatta aaaagatttt atattttttt
     2701 actctatgga gcgggaaacg agattcgaac tcgcgacccc aaccttggca aggttgtgct
     2761 ctacccctga gctattcccg caaaaaataa gtggtgcccg aggtcggact cgaaccgaca
     2821 caaggttgcc cttaccagat tttgagtctg gcgcgtctac cagtttcacc actcgggctc
     2881 atttttaaga tttaaagcta aaattatact tttttaggct aaaaaatact ttaaaaataa
     2941 aaagtatttt caaaaagacg atataaaatt atataattta aatttttgga acagttattg
     3001 cttttgttta ttagcaatgt ttgaaaagat tttaacttta atactttaga ggaaaaaaat
     3061 gagaattaca aataaactta acttcacaaa tagcgtgaat aattctatgg gcggtcaaag
     3121 tgctttatat cagatatctc aacaacttgc ttcaggttta aaaattcaaa attcatatga
     3181 agatgcaagc acttatatag ataatacgcg tcttgaatat gaaattaaaa cattagagca
     3241 agtaaaagaa tcaactagta gagctcaaga aatgactcaa aatagcatga aagctttaca
     3301 agacatggtt aaacttcttg aagattttaa agttaaagta actcaagctg caagcgatag
     3361 caattctcaa acctcaagag aggctatagc aaaagaacta gaacgcataa aagaaagtat
     3421 agttcagctt gcaaatacca gtgttaatgg tcagtatctt tttgcaggtt ctcaagttgc
     3481 aaacaaacct tttgattcta atggaaatta ttatggagat aaaaataata ttaatgtagt
     3541 aactggagct ggaactgaaa gcccatacaa tataccaggc tgggatttat tttttaaagc
     3601 agacggagac tataaaaaac aaataagcac caatgttagt tttacagata atcgttggga
     3661 tttaaataaa gaccctgata aaactaaata tctcacagga gattctaaat ggcaacagct
     3721 tatcggacaa ggttatgtaa aagataatgg tttggatcct gataaagatt ttgaatatga
     3781 tgataaacta gattttcctc caacaactct ttatgttcaa ggtactaaac ctgatggaac
     3841 aagctttaaa agcgctgtac ttgtaaaacc tgaagatact ttagaagatg taatggaaaa
     3901 tatcggagct ctttatggta atacttcaaa taataaagta gtagaagtaa gcatgaatga
     3961 tagtggtcaa attcaaatta cagatctaaa gcaaggcaac aacaaactcg attttcacgc
     4021 tgtagctttc acaccacaag ccgatgatag agctgaactt acaggtatta ttgatgctgc
     4081 caaacaagaa ggcatttcaa tggatgaagt tacaaatagg gttatgcaag ctgctacagc
     4141 tgctcctagt aacggagata taacaaaatt aaacagccct gtaactgtaa caatcaataa
     4201 tcaacaattc acaatcgatt taaaacaaac tgattttatc aaaagtaaaa tgacagatac
     4261 agatggaaat gctactaatg gggctgatta tgataatgta tattttgaaa aaaatggaaa
     4321 tactgtttat ggtaatgttt ctcaagttat caaaggaagc aatgcttatg cgactgattc
     4381 aaccaaactt agtgaggtaa tggcaggaga tagcctaaat ggtactactt taaatttaaa
     4441 agtcaattcc aaaggtggaa attcttacga tgttactata aatttacaaa cttcaactgt
     4501 aagctatcct gatcctaata atccaggtca aactataagt tttcctataa cccataccga
     4561 tcctgcaact ggaaatagtg gagttgttac aggatcaaat gatattactt atggtcaaat
     4621 taatgatatt ataggtatgt ttgctgcaga taaaattcca acccaaagca taacagctac
     4681 aaatggaaaa gttgatgcaa atggttataa taatttacaa caactcatga aagattcaca
     4741 agctactgtt gatgtaagta tggattataa aggccgtatt agtgttactg ataaactttc
     4801 ttcaggtact aatatagaaa tttctcttag cgattctcaa agtggccact ttccacaacc
     4861 accatttagc acaacttctt cagtaacaaa tggtccaaac tttagtttta gtgcaaacaa
     4921 ctctttggtt attgatgagc caaatgtgga tattattaaa gatttagatt caatgattga
     4981 tgctgtttta aaaggcaata tgagagcaga ttctgaaagt gaagatccta gaaatacagg
     5041 tatgcaagga gctttagaaa ggcttgatca tttagcagat cacattagta agcttaatac
     5101 aaccatgggt gcatatcaca acacaataga agatgtaaat actcgttcta cttttttaag
     5161 cgtgaatgta caatctatca aatcaaatgt tattgatgta gattatggtg aagcaatgat
     5221 gaatttaatg caagttcaac ttgcatatca agcttctctt aaagctagta caacaatttc
     5281 ccaacttagc ttattaaatt atatgtaaaa ttttttatgg tataatttgg ctttgatttt
     5341 attttcaagg aaagaatatt aaaaaagaag ccatttttac cagctctaca cttgttattt
     5401 tttatctttg tctttgtatg ctagcaccta gcatgggaga atgggtttac aaggctaatt
     5461 tatttttatt tggagaattt gggtattatt atccattttc tttgcttata ttaaattatc
     5521 tctattataa aaaaaattat aaaatagaaa attttaagcg tagagaactt tttggttttt
     5581 ctttagcctt tttttctact ttacttttat tttctgtctt ttatagaggg tttgggtata
     5641 ttttagaaat tgtatatgga tttttttcta taatcttagg gcatacaggg agtggaattt
     5701 tcgctctttt gcttttacta ttttctttga tcttattgtt tccaaaattt gcaaaagaaa
     5761 ttttaaaaat agaattagat tttacttatt tattaaaagt agagcaagct tttaaatctt
     5821 tacttatgcg tgtatttggt ggagaaaacg agaaagaaga tataggcaaa tcagaaccta
     5881 tggtgccaaa attaaatatt ttacaagata atatatacga aaattcacaa ataaatgaaa
     5941 aagaaaaaac caataactta gaacagataa ttaaagatag caatatcaac gcaagtaaaa
     6001 attcaattac cacagctaag gaaaactttg aaaaactaaa aaatcaaatt ttagatgaaa
     6061 ccatagagat tgataaacaa agcttaaaag aatcgagaag ttttgtttat gagcattctc
     6121 aacaagtgcg aaatttcgca caaaaagcta gtaaaatgag cattagtctt gatgaagatt
     6181 ttaattttat ttcagaagaa gaggtagata tgattcctga acgtttttta aaacctaaaa
     6241 aacttgaaga tataaagcaa atagatacaa ataaaaattt agatgagcca agttataagc
     6301 gtaaaaatat tgaaattcca gtttctaaac aagaagttaa accaaaaatt tttacaaaag
     6361 agcttgaact tagagagaat ttgataaaaa aagaaaaact agaacaagaa tacaaagcct
     6421 atcaaaatga aattttagaa aataaagtaa aacaagaaat taaaaaatta gaagaatatg
     6481 atgcgataaa ttcaagcgat attatagaag ggaataaata tagttttaat agcccaaaaa
     6541 caattaaaac agaaacagaa gaatcaaaca aaataaatga aaataaaaat ccagataaaa
     6601 cagacaatat ctttgaattt gctcccattg tagaagagtt aaatcatcct tatatagaac
     6661 ctactcctat aaaaaatata aatgaaatag ttatagaaga aaaaaataca ctcgatttta
     6721 tccaaaatac agaaactaaa attgatgata aaaaaacaaa tgatcaagaa attaaacttc
     6781 aaaaagcagt tttagccaaa gaaattgcta ttaaccaagc tttattgcgt gaaatagagc
     6841 agggcgaagt agaaaaacca aaagatttta ccttgccgcc attagatttt ttagctaatc
     6901 caaaagaaca tagacaagaa atcaatgaaa gtgaaataga taaaaaaatt tataatcttc
     6961 ttgaaaagtt gcgtcgtttt aaaataggcg gtgatgttat aagcacttat gttggtcctg
     7021 ttgtaactac ttttgaattt cgtcctagtg cagatgtaaa agtaagtcgt attttaaatt
     7081 tacaagatga tttaactatg gctttaatgg caaaatcaat ccgtattcaa gctccaatac
     7141 caggaaaaga tgttgtaggc atagaagttc caaatgatga aattcaaacc atttatctaa
     7201 gggaaatttt acaaagtgaa gtttttaaaa atgctaaaag ccctttaacc atagctttag
     7261 gtaaagatat agtaggtaat gcttttgtaa ccgatcttaa aaaacttccg catttgctta
     7321 ttgcaggaac tacaggtagt ggtaaaagtg tggggataaa ttctatgctt ttaagtcttt
     7381 tatatcgcaa ctctcctaaa accttgcgtt tgatgatgat agatcctaag atgcttgaat
     7441 ttagcattta taatgacatt cctcatcttt taactcctgt tatcacagat ccaaaaaaag
     7501 cagtcaatgc actttcaaat atggtagccg aaatggaaag acgctatcgt ttaatggctg
     7561 atgcaaaaac caaaaatata gaaaattaca atgaaaaaat gaaagaatta ggtgaagaag
     7621 aacttccttt tattgtagta attatcgatg aacttgctga tttaatgatg actgcgggta
     7681 aagatgtaga attttatata ggaagacttg ctcaaatggc aagagcaagt ggaattcact
     7741 tgattgtagc cacacaacgg ccttctgttg atgttgtaac aggactaatt aaagcgaatt
     7801 tgccaagtag aatttcttat aaagtagggc aaaaaattga ctctaaggtt atcttagatg
     7861 ctatgggtgc tgagagttta cttggaagag gagattgttt atttactcct cctggaacaa
     7921 gttctatagt gcgtttgcat gcaccttttg cgagtgaatt tgaaatagaa aaaatcgtgg
     7981 attttctaaa agatcaacaa agcgtagaat atgatgaaag cttcttaaaa gatcagcaaa
     8041 gcgcgggtgt tacaacaaat gaaagctttg atggggaagt agatgagctt tatgaagaag
     8101 ctaaaagagt aatcttagaa gatggaaaaa caagcatttc ttatttgcaa cgccgtttaa
     8161 aaatcggcta taaccgctct gcaaatatta ttgaacaact tactcaaaat ggagttttaa
     8221 gcgaacctga tgccaaagga caaagggaaa ttttataaga ttttttttat tttgatataa
     8281 aaactaatta cataaagaag aatttataaa gataaaagcc cagtaaaaag ggcttaaaat
     8341 tatttatctc taagatttaa ttcggtaatt aacttactat aagaattata atcttttctt
     8401 ttaagataag ataaaagtct ttttctttga cctacaagtt ttaaaagtcc taatcttgat
     8461 gaaaagtctt ttttgtagat ttttaaatgt tctgtaagtt ctgcaattct tgcagttaaa
     8521 agagccactt gaacttctgt tgaaccagta tcacctggtt ttttagcgaa tttcgcaact
     8581 atttctgctt ttttggccga atccaaagcc atgatagacc tcctgattgg taaaataata
     8641 aaattaaaga actataattt taccttaaaa agcaaaaaat aaactgaatt tatctttttt
     8701 agaaggtttt gtcaaaattt aagtcttttt ctaagaatta tttattataa ttacagctat
     8761 ttctgtagtt ataataagga gaatctgtgc tatttaccaa agctagcgaa tacgctttac
     8821 tttctttaat ttatatttct caaaaagaaa cacctcaaga tgtagattct ttagctttag
     8881 agcttgatat tcctaaaagt tttttagcta aaattttaca aactttagct aaagatggct
     8941 tgttaaaatc ctttaaaggg gcaaaaggtg gttttgtttt aatcaaagaa ccaagtcaat
     9001 atactataaa agaaattgtt aatagtgccg aaaaaaagga tatcagtgta tttgaatgca
     9061 gtggtggcac ttgtccaaat aataaagaag aaaattgcac cttaatgcct atgttagtaa
     9121 atttacaaaa taaagtagat gaatttttag attctattac tttagaagat attatgaaaa
     9181 ataatggcaa aaaataaaat agtcgattta gtttttcctt tcttggggcc tttaattgct
     9241 cctgttttaa aagctaaaag cttaactatt gttggttttt tagtttgtat tttagctatt
     9301 attatagttc ctttaccaag tcctattttg gactttttct tagctttaag catagcttta
     9361 tcggtattaa ttattttaat ttctatttat atacccaaac cgacagattt aacaactttt
     9421 ccaactttaa tcttgattat tactttattt agactttcat taaatatagc tactacaagg
     9481 atgattttaa gcgaagggca aaacggccct gaagccgtga gtgagattat agcagcattt
     9541 ggagaatttg ttgttggtgg aaatatggtc attggtgtga ttgtattttg tatcttagta
     9601 ttgattaatt tcatggttgt aacaaaaggt agtacaaggg tttctgaagt acaagcaaga
     9661 ttcacacttg atgcgatgcc aggtaaacaa atggctattg atgcggattt aaatgcaggg
     9721 cttattgatg aacaaaccgc tagagcaaga cgtcaagaag ttattgctga agcaaacttc
     9781 tatggcgcaa tggatggttc ttctaaattt atcaaaggag atgctgttgc aggaattatc
     9841 ataactatta taaatatcat aggtggtttt ttaataggat cttttcagca cgatatggct
     9901 ttaagcgatg ctgcttctac ttatactatt ttaaccatag gtgatggact tgtatcgcaa
     9961 attccagggc ttattacttc tactgcaacc gctataatta tcactcgtgc aagcaaagat
    10021 gaggaaaatt ttgcagaagg aactttaact caacttttaa gcgaatatcg cacgctttta
    10081 atagtaggtt ttgtactttt tatctttgcg ttagtacctg gcttaccaac tttatccttg
    10141 ggctttatgg ctttagtttt tttaagtctt ggctatctta ccaagcaggt taaggaaggt
    10201 aaaattgata taactacagt taaaaaaagc aaaccaagtg ctgcagctgc atctcaaagt
    10261 ggagcaggtg ggacaacggc agcgcctgct aagaaaagcg aagaagaaat tctcaaagaa
    10321 gaagaacaca agattaacga catacttaaa gttgaaattt tagaacttga acttggatac
    10381 ggacttatta agcttgctga aaacgaactt acagaaagga ttcgctcaat gagaagaagt
    10441 attgctgaaa gtttaggatt tttaatgcca aaaataagaa taagagataa tttaagactt
    10501 aaaccaaatg agtatagttt taaactcaag ggcgtgtcta tagcaagtgc cgaaatttat
    10561 ccggataaat atttagccat ggatagtggt tttatcacag aagagataga agggattgct
    10621 acaaaagaac ccgcttttaa ctctgatgca ctttggattg atgcgaattt aaaagatgaa
    10681 gcaacattaa atggctatat agtaatagat cctgcaagtg ttatttcaac acatatgagc
    10741 gaacttatca aagcacatgc aagcgaactt cttacacgcc aagaggtgca aaatcttctt
    10801 gataagatta aaaatgatta tccaatcatc gtagaaggtg ctttaggtgt tgcacctgta
    10861 agtcttattc aaaaaattct caaagacttg cttaagcatc acataccaat taaagatatg
    10921 cttactattt tagaatctgt aagcgatata gcagaagtaa gcaagagttt tgatatgatt
    10981 attgaacatg taagagcgtc tttagctagg atgattacaa atatgtattt agatgataaa
    11041 ggaaatttgg atatttttat cttagactct gctagctctg cagttttaat ggaaaatgta
    11101 caatttagag atggaagtta tcacttgcct ttaagtgtag ctcaaacagg cactttagta
    11161 gatactctaa gggctgaagt tgccgcggta gcaaatggtc gtatcaagcc ttttatactt
    11221 tgcgttgaac cgcagcttag aaaattcatt gctgatattt gttataattt tagcattaat
    11281 atagtagtgt taagttttgc agaaattgca gaaaatacaa attttaatac cgagggtatt
    11341 attaggatag aactttaagg aatataatga aaatttatca tctttcgcat acagatcttg
    11401 atggttatgc ttgtcaattt atagtaaatt tttattttaa aaatgtgaga ttttataatt
    11461 ctaattatgg taaagaaatt aatgaaaatt ttaactctat tataggcgat atagaaaaag
    11521 atgaaaattt cggaaaagct attattctaa taa
//
LOCUS       DAZAND010000056        11491 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.056, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000056 DAZAND010000000
VERSION     DAZAND010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11491)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11491)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11491
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.056"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1592
                     /locus_tag="ACHDOB_001134"
     CDS             <1..1592
                     /locus_tag="ACHDOB_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HFN3326057.1"
                     /translation="QILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKIL
                     KELNSIKNDFFKALNKPENLMIKDPNILKQTATAFEKLENTLKNILGNQASKIQDKEN
                     ILENLLSNKENMKEEKLNHNTKNQDEEKHIKASKEETLTDDTKTDIKQDSKNEENSHA
                     KETDIKEDENLDSDIKTHEEDTQDTKNDIQNNETENKPDNDIKNSTPNQEKIKDGKQE
                     KSKENIKENPKFYETKTENKTSINTNTNTSNPNTNNTQNLNNSQNIQSNNNQTMQNIF
                     KNQEFIKQNIVKNLAFNVENLDLEQVQDLSKNLNNLSRRLNESLKELEPYTQNAKLNQ
                     AELKNLEHKLNLSTKDLAQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAVYNQ
                     ANRLLAQIEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKL
                     GDLEILISLNNEKYIDINIMAENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIR
                     SKFDTRNMKNLDLEMGMDKKV"
     gene            1589..1870
                     /locus_tag="ACHDOB_001135"
     CDS             1589..1870
                     /locus_tag="ACHDOB_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HFN3326058.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(1867..2667)
                     /locus_tag="ACHDOB_001136"
     CDS             complement(1867..2667)
                     /locus_tag="ACHDOB_001136"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HFN3326059.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKS
                     PCEYESLNALFTRTLHIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGALYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDTSIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGILNFNLKAGQGIKFGEKIAD"
     gene            complement(2664..3788)
                     /locus_tag="ACHDOB_001137"
     CDS             complement(2664..3788)
                     /locus_tag="ACHDOB_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HFN3326060.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFAFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMLYAPTYCLFFMTLAWDFIKLILALMGKRDK
                     KYNLILRLIFEFSLIVLSVFLIYISINNALKTPEVKSVDVEIPNLKQDLKIAMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHANMKILVNQNLDLGFINIAGLGDLAGLNKGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHG
                     LYNLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            3874..5169
                     /gene="gltX"
                     /locus_tag="ACHDOB_001138"
     CDS             3874..5169
                     /gene="gltX"
                     /locus_tag="ACHDOB_001138"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HFN3326061.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFGISWQHYYIQSENLKFHRQMALKLISEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLIMLGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAQLAKFYT
                     QEASTIKELKEKMRAIFNTKDFGEFETECKILKELLKDIELFENYEDFKNELLSKSDL
                     KGKKFFMPLRIILTGNIHGPELGDLYPYIKNFIHELARI"
     gene            5172..5453
                     /locus_tag="ACHDOB_001139"
     CDS             5172..5453
                     /locus_tag="ACHDOB_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HFN3326062.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIIAALLSWVNPDPYNPIVQ
                     ILYKLSYPAYTLVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            5450..7075
                     /locus_tag="ACHDOB_001140"
     CDS             5450..7075
                     /locus_tag="ACHDOB_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HFN3326063.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRHSMLEINPENASE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLNKS"
     gene            complement(6972..7457)
                     /locus_tag="ACHDOB_001141"
     CDS             complement(6972..7457)
                     /locus_tag="ACHDOB_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326064.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDINLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKVSLPNVKEETKLVTKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            7553..8044
                     /gene="mobB"
                     /locus_tag="ACHDOB_001142"
     CDS             7553..8044
                     /gene="mobB"
                     /locus_tag="ACHDOB_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HFN3326065.1"
                     /translation="MKQLIMAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLAPNFDICLVEGLKT
                     LDLPRISVFCKEIDESYFTFSNAIASYEKISHPYLTWLDLNDIQAICRYILKNAKNLQ
                     GEL"
     gene            8046..8888
                     /locus_tag="ACHDOB_001143"
     CDS             8046..8888
                     /locus_tag="ACHDOB_001143"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HFN3326066.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DGIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNKKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNHSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            8881..9078
                     /locus_tag="ACHDOB_001144"
     CDS             8881..9078
                     /locus_tag="ACHDOB_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326067.1"
                     /translation="MSDIRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            9088..10974
                     /gene="metG"
                     /locus_tag="ACHDOB_001145"
     CDS             9088..10974
                     /gene="metG"
                     /locus_tag="ACHDOB_001145"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HFN3326068.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKNTTILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQSGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYISSLDFQSKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNILKEGVLKYYNTELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCEKVALALNFEISSTNYAKMILDNELLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKHYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            10978..>11491
                     /locus_tag="ACHDOB_001146"
     CDS             10978..>11491
                     /locus_tag="ACHDOB_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326069.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNDK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFT"
BASE COUNT         4481 a         1735 c         1607 g         3668 t
ORIGIN      
        1 agcaaatttt aaatcaaagt tcttttaaag cacttttaaa tttaagttct aaattggaaa
       61 attttaaaaa ttatataagt aaaaatccca gtcatgctca agaaaaaatc acccctatag
      121 ctaataaaat tttaaaagaa ttaaattcca tcaaaaatga ttttttcaaa gctcttaata
      181 agccagaaaa tttaatgata aaagatccaa acatccttaa gcaaactgct accgcctttg
      241 aaaaacttga aaatacttta aaaaatatac taggcaatca agcttctaaa atacaagata
      301 aagaaaatat tttagaaaat cttttaagca acaaagaaaa tatgaaagaa gaaaaactta
      361 atcataacac aaaaaaccaa gatgaagaaa aacatataaa agcatcaaaa gaagaaactc
      421 tcacagatga tactaaaacc gatattaagc aagattcaaa aaacgaagaa aattcgcatg
      481 caaaagaaac tgatataaaa gaagatgaaa atttagattc tgatataaaa actcacgaag
      541 aagatactca agatacaaaa aatgatattc aaaacaatga aacagaaaat aagccagaca
      601 atgatataaa aaactctact ccaaaccaag aaaaaattaa agatggaaaa caagaaaaat
      661 caaaagaaaa tatcaaagaa aatccaaaat tttatgaaac aaaaacagaa aacaaaactt
      721 caatcaatac aaataccaac acttcaaatc ctaacacaaa caatacgcaa aatttaaata
      781 attctcaaaa tattcaatct aacaataacc aaactatgca aaatattttt aaaaatcagg
      841 aatttataaa acaaaatatt gtaaaaaatt tagcatttaa tgtagagaat ttagatctag
      901 aacaagtgca agatttaagt aaaaatttaa acaatctttc tcgtagactt aatgaaagct
      961 tgaaagaact tgaaccctat actcaaaatg ccaagcttaa tcaagcagaa cttaaaaatc
     1021 tcgaacacaa actcaatctt tctaccaaag atctagcgca aattaaacca aaaacagaac
     1081 aagatatagc tgaatcttta catcatgatg taaaatcaac acttttgcaa atttcaaatt
     1141 tggctaaaaa tgaaggcaat gaagctgtat ataatcaagc taatcgtctt ttagcacaaa
     1201 ttgaaatcaa tcagcttatg tctttagcta atgattctat caatacttat ctgccttttt
     1261 cttgggatga tttaaatgat tctaaaatta tgtttagacg cggaaaaaag gataaatttt
     1321 ttgctcagat taaactcgaa tttgcaaaac ttggggattt ggaaattctt atttctttaa
     1381 ataatgaaaa atatatagat attaatatta tggcagaaaa tattgaattt agaaaaacca
     1441 tctatgaaaa tgcccatgag cttaaaagaa atatcaataa agcaggactt ttaagtgcaa
     1501 atttctttgt aggtgatatc ataagaagta aatttgatac tagaaatatg aaaaatttag
     1561 atcttgaaat gggtatggat aaaaaagtat gagcaaaatc aaaagatcaa ttaaaaaagc
     1621 tgtagctcta ggctatcaaa aagaaaaaaa ctctgcccca aaagtgcttg caagtggcaa
     1681 aggtgaaagt gctgctaaaa ttatttcttt agccaaggaa cacggagttc ccattaaaga
     1741 agatgaagat ttaatagaaa ttttaagcaa acttgactta ggcgatgaaa ttccacctaa
     1801 tatgtataaa gctgtagctg aagtttttgc ctttatctat caaatggcaa ataaaactcc
     1861 taaaaactaa tccgctattt tttctccaaa tttaataccc tgccctgctt ttaaattaaa
     1921 atttaaaatc cctttttgag agattaaaac tatagtagaa cccagttcaa aatttcctag
     1981 ttcttcgcct tttttgaaat ttaaattttc atattttcta gtaaaattat gagaaatttt
     2041 agcattggtt tgtatgcttg tatcaaaatt aaaacgcatt tttcctacat tttgcgctcc
     2101 tacaaaaaca agccaaaaaa tacctttttc attttgacat tttaaactca ctctttcatt
     2161 ttttacatat aaattactaa tgcgttctaa atgcttttca tttacactat aaagggcgcc
     2221 gcttgtgtaa gttgcgctta aaatttgcat atcacaaggg ctgtgataac gatgataatc
     2281 ttttggagaa agatagatat tgacataatc aagcccattt ttaagctcat ctttttcaaa
     2341 gctatctttt aaaagctcct caatgctata agtatgccct tttatagaaa aagcaaaatg
     2401 ttcttcattt gccaaaaaag tacttccaca ctctaaaatt ttaccatcac ttggactgat
     2461 aaaaccttct tcaagttttc ttggaatgtg caaagttctt gtaaaaagag catttaaact
     2521 ctcgtattca caaggagatt taaattcact catatcgata ttaaaatact taacataatt
     2581 ttcattaata actttttgta tcattttagg aaatttaatc cccgctacaa aaccaaaaag
     2641 cctcgaactt tcttttgaaa aactcatttt tttcctttta aatttaaaat cactatttca
     2701 ctcggagcaa aaactctaag acttggcccc caaaatcctg ctccactact cacataaagc
     2761 ttagtttttt ctcctaaatt ataaagccca tgaacaaaac cttgctgaag tttaactaaa
     2821 aacataaaag gaaaaatttg ccctccatgc gtatgcccac ttaaaacaag gtcaaaatca
     2881 cttaaatcat aaagcaaagc tgttttaggt tgatgtgtga gtaaaatact agctttactt
     2941 gtatttaaat ccacttttat tcttgctaaa tcaggagcat ataacccctt attaagtccg
     3001 gctaaatctc caagtccagc aatatttata aaacccaaat ctaaattttg attgactaaa
     3061 attttcatat tagcatgttt tctaagtaaa tccaaaactt cattgatacc atgataatac
     3121 tcatgatttc ccaaggcata aaaagttcca taagtggaat taaaatcatt aagttttgag
     3181 atgtaatttt ttaaatcttt aggattagta tcaatcagat ctcctactat tacaaccata
     3241 tcaggacttt gcaaattcac tttagtgatg agcttatcta aaaaattttc atgcaaattt
     3301 ttacccaaat gtatatcagt aagcatggca atttttaaat cttgtttaag atttggtatt
     3361 tcaacatcaa cactctttac ttcaggtgtt tttagagcat tatttatact tatataaatt
     3421 aaaaacacac ttaaaactat aagagaaaac tcaaaaatca aacgcaaaat aagattatat
     3481 tttttatctc ttttacccat aagagctaaa atcaatttaa taaaatccca agctaaagtc
     3541 ataaaaaaca aacaataagt cggcgcataa agcatggcta aaatttcata ccaagtatca
     3601 cttaaatatt catctctacg aaatattaaa aacacagctt gggctaaaaa aagcacaata
     3661 aaaataaagg caaaaatttt ataaaaatac ttaaaaagag taattttctt gattaatctt
     3721 ttataaatat aaacatttgc taagccaaaa atcaataata caatgaaaga aaaaattaaa
     3781 aatatcataa aagtattata accaagtaaa attaaatatc cgtataaatt tttctgttat
     3841 aataagcttt taaataattt taaaggctat aaaatgtacc gttttgcacc ttctcccaca
     3901 ggtgatatgc acataggaaa tttacgcgca gcaattttta attatatctg tgcaagacaa
     3961 aaaaatatgg attttatctt acgtattgaa gatactgata aggctagaaa tatagcagga
     4021 aaagaagaag aaatcaaaga aattttaaat ctttttggta tttcatggca gcattactat
     4081 atacaaagtg aaaatttaaa attccatcgc caaatggctt taaaacttat aagtgaaaaa
     4141 aaagcttttg cttgtttttg taccgaagaa gaacttgaag caaaaaaaga gttagctaaa
     4201 aaacaaggta aagcttatcg ctacgatggc acttgtgaaa aactagccga tattgatgtt
     4261 ttagaatgtg aaaaaccctt tgttatccgt cttaaaaaac ctactcatac tatgaaattc
     4321 actgatttta tcaaaggcga gcttagtttc gagcctgaaa acatagactc ttttgtcatc
     4381 atgagaacag ataaaactcc aacttataat tttgcttgtg cggttgatga tatgcttgaa
     4441 aatgttactt gtattatacg cggagaagat catgtttcaa acactccaaa acaagaacat
     4501 atccgcgcaa gcttaggtta taataaagct atgacttatg cacacttgcc tatcatttta
     4561 aacgaagaag gtgttaaaat gagtaaaaga gaagcacatt cttctgtaaa atggctactt
     4621 gaaagtggaa ttttacctag cgcaatcgca aattatctta tcatgctagg caataaaact
     4681 ccttgtgaaa tttttacctt agaagaggct ataaaatggt ttgatatttc taaagtttca
     4741 aaagctccag caagatttga tcttaaaaaa cttttgcaaa tcaatcgcga acatatcaaa
     4801 atgataaaag atgatgagct taataaaatt ttagatttaa ataaagatct tgcacaactt
     4861 gctaaatttt acactcaaga agcaagcacc ataaaagaac ttaaagaaaa aatgcgagct
     4921 attttcaaca caaaagactt tggagagttt gaaacagaat gtaaaatttt aaaagaactc
     4981 ttaaaagata ttgaactttt tgaaaactat gaagatttta aaaatgaact tttaagcaaa
     5041 agcgacttaa aaggtaaaaa atttttcatg cctttaagga taattttaac aggaaatatc
     5101 cacggacctg agcttggtga tctttatcct tatattaaaa attttattca cgaattagca
     5161 aggatttaac tatggttata gactctttta ttatttctat ttttcaagta ctacaaattg
     5221 tcattaacat ttatacttgg attattatca tcgcagcact tttaagctgg gtaaaccctg
     5281 atccttataa tcccatagtg caaattttat ataaattaag ttatcctgct tacaccttag
     5341 ttagaaaaat tccaacacgc attggtaata ttgatcttgc gcctttgatt atagtcttag
     5401 cattgcagtt tcttggcatt tttcttggga atatcttaag gagtatattg tgataaaaaa
     5461 aatactcgtt tttttattta ttttttcaag tttaaatgct acacaatata gcatagaaaa
     5521 actcaaaaag gaagaaaatt cacttgctaa ggattattat atttataggc ttttagaaaa
     5581 aaataaaatc agtaaaaaag atgcacaaga tttaaattct catatttttc gctatatagg
     5641 aaaaattaaa tccgaacttg aaaaaatcat ccctttaaag ccttatatca acccaaaata
     5701 tgctaaatgc tatacctata cagcaaatac tatcttagat gcaaatttaa cttgtcaaag
     5761 tgtgcgctta aattcattag tttttatagc gagtttaaat tccaaagacc gaacgacttt
     5821 agctcaaacc tttaaaaatc aaagacctga tttgacaaat ttattactag cttttaatac
     5881 ttctgatcct atgagctata tagtacaaaa agaagatatt aatggttttt ttaaacttta
     5941 taattattct aaaaaatacg acttagattt aaatacaagt ttagtcaata aactaccaaa
     6001 ccacattggt tttaaagatt ttgcacaaaa tattattatt aaaaaagaaa atccaaaatt
     6061 tagacattct atgctagaaa taaatcctga aaatgcaagt gaagattctg ctttctattt
     6121 gggagtcaat gccttaactt atgataaaac agagcttgct tatgactttt ttaaaaaggc
     6181 ggcacaaagt tttaaatcgc aaagcaataa agacaatgct atattttgga tgtggttgat
     6241 taaaaacaat gaagaagatt taaaaacttt atcacaaagt tcttctttaa atatttatag
     6301 tctttacgca aaagaactta ctaacacacc ttttccaaag atagaaagcc ttaatccaag
     6361 caagaaaaaa aataatttta atatgcaaga tccttttgct tggcaaaaaa taaacaaaca
     6421 aattcgcgat gctaacgcaa gtcaactaga tgtcttggca aaagaatttg acacacaaga
     6481 aaccttgcct atttatgctt acatattaga acgcaaaaat aattttaaaa aacattattt
     6541 tataatgcct tattatgaca atataaaaga ctataacaaa acaagacaag ctttaatttt
     6601 ggctattgcc agacaagaaa gtcgttttat tccaactgct atttcagttt cttatgcttt
     6661 aggcatgatg caatttatgc catttttagc caatcacata ggggaaaaag aattaaaaat
     6721 tccaaatttc gatcaagatt ttatgtttaa acctgaaata gcatattact ttggaaacta
     6781 tcatctaaat taccttgaat cgcgtttaaa atctccactt tttgtcgctt atgcttataa
     6841 tggcggtata ggatttacta accgtatgct tgcaagaaat gatatgttta agacaggcaa
     6901 atttgaacct ttcttgtcta tggagctagt tccttatcaa gaaagccgaa tttacggaaa
     6961 aaaagttcta gctaattata ttgtgtatcg acatcttctg aacgatagta taaagatttc
     7021 ggatattttt gaaaatttaa ttcaaaacaa ggcaaatgat ctaaacaaat cttagttaca
     7081 agcttagtct cttccttgac attaggaaga gatactttaa aataatcagt atagttgttt
     7141 tgtattatat attttaagta ctcatcatcc aatttttcaa tattggcttt tttattattg
     7201 ataaaaactt ctaaattttg aatttttaat gtatttggag taaaagacaa ggccaataca
     7261 tcatctttac ttgtcttatc tagaattgga tttaaataag acatagttat aatggcatta
     7321 atcttatctt gtgtgatttt gtatttttga gtaaacatta aagtttgaga ttttaaattt
     7381 atatccacaa tcgcctgatc ttttaaagaa caagctccaa gcaaaaaagc acctaaaatt
     7441 acactataaa ttttcattct ttttccatat tttttagtat tattgtagcc ttttaaccct
     7501 attttttggt ttaaaaagat ataattttac aaaaaaatta agagtatatt ttatgaaaca
     7561 acttatcatg gcttttagcg ggccttcaaa ttcaggaaaa actacactta tcacaaaaat
     7621 agctgataat tttttgcaac aaaatttaaa agttttaatc attaaacatg atcctgccga
     7681 taaagctcaa tttgatttta acggtaaaga tagttttaaa tttttccaaa gcggagctga
     7741 agtcatggtt ttaagcccta caagaacaac ttttttttct catgaaaata gagatatttt
     7801 aaaagcttta aaattagcac ccaattttga catttgtttg gttgaaggat taaaaactct
     7861 tgatttacca cgcattagcg tattttgcaa agaaattgat gaaagttatt ttactttttc
     7921 aaacgctatt gcaagctatg aaaaaatttc ccacccttat cttacttggc ttgatttaaa
     7981 cgatatacaa gctatttgtc gatacatact taaaaatgct aaaaatttac aaggagaatt
     8041 ataaaatgca agaagtgatt tcttatatac aaaaagcggt tttagaaatt tctaacgctt
     8101 taaaatttcc cgatacaagc tacagtcaaa atcaaaattt tacaggcgat acccaactca
     8161 aatttgatgt tttaagcgat ggaatcatca caaaaactct aagtcaatgt tcaagcatta
     8221 aagccatcat aagtgaagaa aaagacgaaa ttttaacgct taacgagagg gcaaatttta
     8281 tcgtagctta tgatccttta gatggttcta gcttaatgga tgttaatttt gccataggtt
     8341 ctatttttgc catctatgaa gaaaaagcaa gtgctaaaaa tttaagagct gcactttata
     8401 gtatgtatgg agcgcgctta gaacttgtga tttgcaaaga tcagccaaaa ctttatcgct
     8461 taaatgcaaa taatgaattt atttttataa aagatcttaa aatgaataaa aaaggcaaga
     8521 ttaatgctac aggcggaacg caaaaatttt gggaagaaaa acatgccaaa tttatcaaaa
     8581 gtctttttga tgaaggctat cgcttaagat attctggagc catggtaagc gatatcaatc
     8641 aaattttatt aaaagggggt ggcattttta gctatcctgc aacacaagat gcgcctaatg
     8701 gcaaacttcg tgcctttttt gaagtctttc ctctagcctt tatcatagaa aaagcaggcg
     8761 gaaaaactac aaatggaaaa aaccactcct tacttgaact tgaatttgat aaaatccatg
     8821 cgacaactcc ttgttttttt ggctcagaat atgaaatttc aaaactttta aaggcttata
     8881 atgagtgata ttagagatga atttgagcaa gatatggata aaaaaaaaga aattttactt
     8941 tcatgtcaaa actcaaaaaa cctaaactct tgttataatt gcgatgaaat ttttaactgc
     9001 caaactagaa aaaattatgt tgatgcagtc tataacagta tgtctaaggg taaaaccgaa
     9061 ggcggatttg acttttaaag gaaaaaaatg cgttatatta caacaccaat ttattatgta
     9121 aatgatgtgc ctcatttagg tcatgcttat actaccatca tagccgatac tttagcaaga
     9181 ttttatcgtt tgcaaggaca tgaaacaaga tttctaacag gaacagatga gcatggacaa
     9241 aaaatcgaag aagctgccaa actaagaaat tccactcctc aagaatatgc tgataaaatc
     9301 agttttgaat ttaaaaaatt atgggatgaa tttgaaatca cctatgatat ttacgcaaga
     9361 acaactgata caaggcatat tgaatttgtt aaagctatgt ttttaaaaat gtggcaaaaa
     9421 ggcgatattt ataaagatga atacgaagga cactattgta tttcttgcga aagctttttt
     9481 actcaaagtc agcttatcaa tgattgttct tgtccagatt gtggcaaaaa cactacgatt
     9541 ttaaaagaag agagttattt ttttaaactt tcaaaatacc aagataaaat tttacaatgg
     9601 tatgaagaaa aagatcccat cctaccaaaa aacaaaaaaa acgaacttat aaattttgtc
     9661 caaagcggcc ttaaagatct ttccattaca agaacaagtt ttgattgggg gattaaactg
     9721 cctcaagaaa ttaatgatga taaacatatt atttatgtat ggcttgacgc actttttatc
     9781 tatataagct ctcttgattt tcaaagcaag ggagaaaatg ctaaattttg gcctgcgcat
     9841 gtgcatttag taggaaaaga tattttgcgt tttcatgcca tttattggcc agctttttta
     9901 atgagcgtag atttaccttt gccaaaattt ataggtgcac atggctggtg gactaaagaa
     9961 ggtgaaaaaa tgagcaaatc taaaggcaat gttgtaaaac ctaaagaagt ggttgatgcc
    10021 tatggaagcg aagcttttag atatttcttg cttagagaag tgccttttgg taatgatggg
    10081 gattttagcg aaaatatgct gataaatcgt atcaatgctg aactaagcaa tgaatttggg
    10141 aatttgctta atcgcattat aggtatgagt acaaaatatt ctcaaggaaa tattttaaaa
    10201 gaaggtgttt taaaatatta caatactgaa ctaaatcaag caaaagaaca cttaaattta
    10261 gcggtagaat ttttagaaaa cttacagtgt aatcgttatt tagaagaact ttttaaagcc
    10321 ttaagcgtag caaatttagc catcagcaaa tacgaacctt ggaatttaat caaagaaaac
    10381 aaacacgaac aagctaacgc tttagttgca ctttgtgcaa atattttagc caaaacaagc
    10441 cttttattaa gccctactct accaaagtcc tgtgaaaaag tggctttagc tttaaatttt
    10501 gaaatttcat ctacaaatta cgcaaaaatg atacttgata atgaactttt agattttaaa
    10561 gcaaatcctt gcgaagcttt atttccaaaa gtagaaaaag ctcttttaaa acaagaaatt
    10621 aaagaagaac ctaaaaaaga agaaagtcct aaaataaaaa tcgatgattt tgcaaaaatt
    10681 gaaatcaaag tcgctaaggt gcttgattgt caaaatatag aagggagtga aaaacttttg
    10741 aaatttcaac tcgaacttga cgataaagaa atccgtcaag tactctcagg catagcaaaa
    10801 cactataaag ccagtgattt aatcggtaaa caagtttgca ttataagcaa tcttaaaaaa
    10861 gctaaaattt ttggacatga aagcgatggt atgatacttt ctgcaaaaag cggagataaa
    10921 cttgttttaa tcacccctga acaacttgta caaaacggtt ctttagtagg ctaaaatatg
    10981 caaattagca atttaggtga acttttaaac gcaacgctca ttcatgaagg tagcgtttta
    11041 agtgtggaag gttttgccat aaatttaaac gaacttaaag caggctttgc cttctttaat
    11101 aacgataaaa aagaaattac ccaagctgta aaaaaaggcg cttatgctat aattacagaa
    11161 aatgacatta ctattgaaga taaagacatt ttttacttta gagtagaaaa tctagaacaa
    11221 gctcttgtaa gatttttacg ctttttttgt gaagataaag aatgtgaatt tttacttttt
    11281 aaatcttacg aactaagtct ttgcaaggct ttttatttta acattttaaa aggaaatatt
    11341 tttgctgatt ttgaaaaact aatcaaagca aaaaagggtg aaattttttg ttactgtgaa
    11401 gaaaattact taaataaact ttgcgcctat tctcatagtc taaaagatgc taattttacc
    11461 ttattatcgc gatctagctt cttttttaca a
//
LOCUS       DAZAND010000057        11476 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.057, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000057 DAZAND010000000
VERSION     DAZAND010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11476
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.057"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..238)
                     /locus_tag="ACHDOB_001147"
     CDS             complement(<1..238)
                     /locus_tag="ACHDOB_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HFN3326070.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKDFAKDTRADFIILNN"
     gene            complement(232..894)
                     /locus_tag="ACHDOB_001148"
     CDS             complement(232..894)
                     /locus_tag="ACHDOB_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HFN3326071.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLVDFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLANYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGVGYK
                     LC"
     gene            complement(881..2464)
                     /gene="serA"
                     /locus_tag="ACHDOB_001149"
     CDS             complement(881..2464)
                     /gene="serA"
                     /locus_tag="ACHDOB_001149"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HFN3326072.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKVPKDELMQMLSD
                     VEVAITRSSTDVDINFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            complement(2461..2949)
                     /locus_tag="ACHDOB_001150"
     CDS             complement(2461..2949)
                     /locus_tag="ACHDOB_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326073.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            complement(2949..4619)
                     /locus_tag="ACHDOB_001151"
     CDS             complement(2949..4619)
                     /locus_tag="ACHDOB_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HFN3326074.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDSIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELSSSPV
                     QEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRMKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            complement(4751..5584)
                     /locus_tag="ACHDOB_001152"
     CDS             complement(4751..5584)
                     /locus_tag="ACHDOB_001152"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-enyl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HFN3326075.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIENFKI
                     N"
     gene            complement(5574..6860)
                     /gene="aroA"
                     /locus_tag="ACHDOB_001153"
     CDS             complement(5574..6860)
                     /gene="aroA"
                     /locus_tag="ACHDOB_001153"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HFN3326076.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQNLKAFNYKS
                     EISSAQVKTAMILSAFRANNVCAFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEISP
                     LKKPLKAQNIIIPNDPSSAFYFALAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            complement(6857..9178)
                     /gene="pheT"
                     /locus_tag="ACHDOB_001154"
     CDS             complement(6857..9178)
                     /gene="pheT"
                     /locus_tag="ACHDOB_001154"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HFN3326077.1"
                     /translation="MIITRSWLNDWLELEEISSDKIAKTLNSIGIEVDRVSALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKTNEGIMLLDESIGKLELGRALNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLATALNLNLKEPKPFKEGENVLGIGRILRLAAEKELNG
                     LYNYRAIELKGQFQINLLLSLRLAQIESLGKNSIENLLSYATHSTGVLFNAYDLNSLS
                     GEDEEFTINLTKQAHGETKVSCKDKFLSFSGIFQNDESKCKNDSKIVIIEANYTDPLV
                     IANAKMYHKDQDEKTLYRSFRGSEPKLNLGMDFLLSIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIESIGDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNEEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     AVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            complement(9175..10167)
                     /gene="pheS"
                     /locus_tag="ACHDOB_001155"
     CDS             complement(9175..10167)
                     /gene="pheS"
                     /locus_tag="ACHDOB_001155"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HFN3326078.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDG
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            10290..10655
                     /locus_tag="ACHDOB_001156"
     CDS             10290..10655
                     /locus_tag="ACHDOB_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HFN3326079.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKHFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            complement(10685..11254)
                     /locus_tag="ACHDOB_001157"
     CDS             complement(10685..11254)
                     /locus_tag="ACHDOB_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1 family glyoxalase III"
                     /protein_id="HFN3326080.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLIK"
     gene            complement(11247..11426)
                     /locus_tag="ACHDOB_001158"
     CDS             complement(11247..11426)
                     /locus_tag="ACHDOB_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326081.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNHQMMQKNKE
                     REERFKKYKKGEQNE"
BASE COUNT         3793 a         2093 c         1343 g         4247 t
ORIGIN      
        1 cattgtttaa gataataaaa tcagccctag tatctttagc aaaatccttg atattagcat
       61 catttaaatg ctctaagaga gaaaatttta aaacatcatc aagacttttg attttttgtt
      121 catattgttt tataagcaag aaattaagat aagaattagt aaaagtataa aaaataaacc
      181 caaaaatcaa agccaataca acaaaaaaaa ctataaaaat atttttagtt tttagcataa
      241 tttatagcca acacccctaa cacttataat atgatctttt agttttggaa atttatttct
      301 aagtcttgtt agagctatat tgattgtttt atcacttgta gtatcatctt tccaaacact
      361 ttcgcttaaa aattgtctag taagcaaggt atttggattt tcaaaaaaac attttaaaag
      421 ctcatagtca agatttgaga tttctaattt ttgatttttg taaaagaatt cataattagc
      481 caaatctaaa ataaaatcac caaaagatag tttttcttct tcttttttat ggcgttttaa
      541 aattgcttta atgcgaagca aaagctcatt gaaatcaaaa ggtttgcaaa cataatcatc
      601 acaaccactt tcaaagcctt cgagcaaatc ttgatgcaaa gccttggctg taagaaaaat
      661 aactgcttct ttatatcctt gctctcttaa atcttgaatt ttttctaaag aatctccact
      721 gggcaaattt ctatcgacta ttaaaagatc gatttgctca ttatcgagca aatcttcaac
      781 tccaaaaaaa tccactaaag atataacttc ataaccacta gatttcaact ttaaaacaag
      841 cagttcgttt aaatctatat catcttctat aattaaaatt ttaaatttca acatattgga
      901 caaatacaca cgcctctaat tgttttagtt catctaatac ttctttttga actttttcat
      961 caatcaaaac aacagccaaa gcatacccaa aaccatctct accaagccta aaatcagcta
     1021 tgttgatatt tttagctgcc aaaacggaac tgattttagc tataactcct ggtatgtctt
     1081 tgtttttaaa aataatcatt ttcccttttg gcttaaaatc agttttaaag ccatttaatc
     1141 caactatgcg ttgttcattt tcattaaaca ctgttcctga aacactgata tttgaatttt
     1201 cggtgataat tttaacacta agtttattat tataaccact atttggaaga gtttcgcaag
     1261 ataattcaac tcctttttct ttggctacaa attctgcatt aacataatta attttctctc
     1321 ctaaaattcc acccaaagca ccaacagctg caaaggttag catagaattt gcatactcgc
     1381 caataattcc ttcagcctct aatttaatac tttttatcgg atttttatca atttgaacag
     1441 ctaaaaaagc cattttagaa acaagttcta tataaggagc tacaaaaggt ggtaagtctt
     1501 cagttttaat tggtaaattt aaggcattag gataagccac gcctcgtgct gcacttaatg
     1561 cttgctcaca agcttctctt gcgatattat cttgactttc taaagtattt gctcctaggt
     1621 gagaagtaac cgaaatattt tcaaagtcta aaagaggatg attagtcgcg ggttctttat
     1681 cgaacacatc tataccaagc catgctattt taccactttt taaaccttca tataaagcct
     1741 cttctgtgta caatcctccg cgagcacaat ttattaatct tattccatct ttcatttttg
     1801 caatttcttg ctttcctatc ataccattgg tttctttggt ttttggtgtg tgaatggtaa
     1861 taaaatcact tttttctaaa atttcatcca aattttttgc ttgctccata tctaaatctg
     1921 taatcttaga agcagaaata tacggatcat aggctaaaat tttcatacca aatgctttag
     1981 cgcggatagc tactcttgaa cctatatttc caaaacctat aacccctagg gttttgttca
     2041 tcaattcaat gccataccat ttttctcttt cccattttct ttcaattttt aaaaaattat
     2101 gagcattgac aaagcttcta gctgatgtta aaagatgtgc cattgttagt tcaactgcgg
     2161 caatagtatt tgcagttggg acattcatca caatcactcc tcttttagaa cactctggaa
     2221 tatcaacatt atctacgccc accccagcac gcacaagcgc ttttaatttt ttggcatgat
     2281 ttaagaaatt tatatctaca tctgtagaac ttctagtaat agcaacttca acatcgctta
     2341 gcatttgcat aagttcatct tttggaactt ttgcagcttc tataagctca atatcttcag
     2401 cttttcttag aatatcgaca cctttatcca aaatagcatc acatactata atcttttttt
     2461 tcataaccaa atttccttta cttctgtatt tattttatat ttttttaatt ctttgataat
     2521 atcatctata agtttttcat tacctgtatc caaaaagatt tctggactat cacctgattt
     2581 aagaagaaaa tacttcacat taaaagaatt taaagtctgt cttaagcaaa acatagaata
     2641 aatatcatat tttccaacta taagttgata atatttattt ttctccttaa gctcgctagt
     2701 atccgcatca aaatataagg taaatttttc tgctgctggg gtaaaatctc ttgtaggcca
     2761 ttttgctaat tcttcttgcc atgaaagatc ttgattttgg gtttgaatgc ttggctgtgt
     2821 atttgtatct ttagcaaatt gtggaatgaa atttacatta gctttaaatt gccaaagcaa
     2881 tgtaaaaaca acagcaagca aaatgagtaa taaaatactc aaaatgctta ttgtaatgta
     2941 ttttttcatt aagctagctg atctttaatg atatcaccta aagtcacttt atcatcatta
     3001 ttgatttcat taagaacttc tctttctttc attctaacaa gatttttaac acttaggcga
     3061 attctatttt tcttttcatc aataaaaact atagcagctt caatatcgtc gccaattttt
     3121 aaattttcaa gcatagaagt gcttatatct tctttatgaa ttaaagcatc aacattttta
     3181 cttagttcta caaaaacacc aaaatcttta atatcgcgga tagcgccttt tacaatatcg
     3241 ccgactttat gaattttagc atattcttgc actggagaac tgcttaattc ttttgtactt
     3301 aatgatattt tttggttttc ttcatctatt ttgataattt ttaccttgat tttatcccct
     3361 tgagagaatt tgtctttgca tttatcgttt ctatcccaag aagcatcttc attatgtaat
     3421 aaaccttcaa taccaccaag tttaacaaat gcaccaaaag aagttactga ggtgatttct
     3481 ccttcaacca catctgcaat tttataagat ttcataaatt catcaaaagg tctagaaagt
     3541 aaatttctta aagaaactct taagcgtctt tcatttggat tgatttcaat tacttcaaca
     3601 tcaatttctt gacctttgtt gatataatct tttggatttt taatgttttt atcccaagaa
     3661 atttcactga tatgtaaaaa tccttctata tcatttccta aatccacaaa agcaccataa
     3721 ggctctatat ttgatactat tactttaatg gtatcaccta catcaagagt atcttttatc
     3781 tcgctccatg gatcaggtaa agccgctttt atagacaagg ataaatgttt gcgttcttta
     3841 tcatacttta taactttaac tggaacctta tcaccctctt tataaagtgt tccaggattt
     3901 acaggtcctt tgtaagaaat ttcgctgtaa tgaacaagac catcaacacc tcctacatcc
     3961 acaaacatac cataagtagt aatttttttc acaatacctt caattaaatc ttcttgttgt
     4021 gctacattat tgatcaattc tttgcgtttt cttctctcgt catctaaagt ttttttacga
     4081 gaaacaataa tactttgctc atctttgtcg attttaataa ttttaacttt aaatgtttta
     4141 cctataatat tatttgtttc tttaaagcca tattgagatt ttggtaagaa aaattcaaca
     4201 tcattttcat caacaactat caatccgcct ttattttttc caactacttt tacggtaaaa
     4261 atatcatctt gattttcttg atagttttta ataaattcaa taactttttc ttttctcaaa
     4321 gcttttttat gagaaagtaa agatctgcca ccacgagaac ccataacagc aactttaata
     4381 ctatcgccta cattaaataa tagcttagaa ttatcatctt gtatttcgct aagagctaaa
     4441 ataccttcag attttttacc tatatctaca taaacttcat catttttgat ctctacaatc
     4501 acaccctctg ttgtagcctc ttctcttgat ttatcgaaag cctccaaaag ctgtccaaaa
     4561 tcttcttcct caagataatc atctacgcca ccttgaactt ttttgttcac ctcgctcatt
     4621 atggtccttt aaaataattt ttagaaattg attgatttta ccttattttt ctttaattag
     4681 tgttaagttt ttttattttt gttaattttt tttaaatttt tgactttttt attctatttg
     4741 aaaacatttt ttaattaatc ttaaaatttt ctattttggc gataactttt tgtatgatcc
     4801 aatcaggagt actagcacct gcactaatgc cacaatgttt tttatccaaa aaccattctt
     4861 tttttaactc ttcttcggtt tcaattagat agctatcttc acaattggtt tttgcaatca
     4921 aaaaaagttg ttttgtattg gctgagtttt taccccctac aacaaccata acatcacttt
     4981 taagcgagag ttctttaatg gcatcttgat ttttaaaggt tgcgtcacat atagtattaa
     5041 aaacccttac ttctttggtt ttaagtatta aaaaatttac tatctccata aaatgctcag
     5101 gcttcttagt tgtttggctt accacagcta ttttattagg aagttttata ttttgaagtt
     5161 cttttttatc caaaaccaca taagcttttg tacttacata actttttact cctttaactt
     5221 cgggatgatt ttcatctcca aaaataacaa cttcataacc ctccttgctc atttgctcgc
     5281 aaatttgttg tggttttgta acaaaaggac aagtggcatc aaaaatttct atatcttttt
     5341 ttctcaattc ttctaaatct tgctttgtaa taccatgagt tcttataata gccttttttt
     5401 cattgcttaa agcttgtata ttttccaaag ttttgacatt aaaatttttt tgtaaacgag
     5461 aaatttcttc gttattatga ataagagggc ctatagttgc agcatctttt atttgttctg
     5521 cttttttaat agctctttta acaccaaaac aaaaaccata gttttttgct aattcaataa
     5581 tcaatcctag ctcctaaatt tgataaaatc tctataaaat ttggaaaaga agtttttata
     5641 caatcactat catcaatctc aattccacaa agcaaaccta aaatagcaaa actcatagca
     5701 atacggtgat ctccatagct tttaattttt gaagatttta gttcgcatcc accttctatt
     5761 tcaaaaccat catcaagttc tctagcttca acaccacaaa gctttagatt ttcaaccatc
     5821 acagcaatcc tatcgctttc tttaacgcgt aattctttag catttattaa actagattta
     5881 cccttagcca aagcaaaagc tatagccaaa gcaggcgctt catctatcaa ccaagcaata
     5941 ttatctttaa cttctatgcc attaagcttg ctagactcca ccctgatctc accaatagtt
     6001 tcaaaatcat tttgagttat tgtcatttca agtttggcac ccattttttg caaaatttta
     6061 tacgcctcta tacgagtagg attaagtaaa atatttttta aaataatttg agatttaggc
     6121 aaaataatag ctgctaaagc aaaataaaaa gccgaagaag ggtcattagg aatgattata
     6181 ttttgagctt ttaaaggttt ttttaaagga cttatttcaa gacttaagcc atcattgcta
     6241 acccttattg gagctttcat agcctttaac atgttttcgc tatgatttcg actaagagaa
     6301 atttcactaa aagcgcatac attattagct ctaaaagcag ataaaatcat agctgtttta
     6361 acttgagccg aagaaatttc gcttttatag ttaaaagctt ttaaattttg accttctata
     6421 caaagtggag ctaaatttgc ctcatttctt ccataaattc tagcgcctat ttgagtaagt
     6481 ggtttgctta ttcttctcat aggacgattg tttaaatact tatctccact taaaacaaaa
     6541 aaaccagaaa ttcctgctaa aaatcctatc atcaaacgca tagcagttcc tgaatttcca
     6601 cagtctaaaa tacaatttgg agataaaatt tctttagggg gtataatttt gacgcaagaa
     6661 tctttttgtt caattttagc tccaagattt tttataattt caagagtgtt taaagtatct
     6721 tgagctaaga gataattttg agccttattt tcttcttgtg ttaaaagcga aaatatagca
     6781 aaacgatgag atatgctttt atctgctgct atattttcaa gtatagcatt tacaggggtt
     6841 tgcaatttgt aaattttcat cttaaatcaa gacccaaatt tttaagagta tttaaaattt
     6901 tatccataca ttcattgact tgattatcct ctagagtttt atttatatcc ctaaaagaaa
     6961 aacttatagt aatgctataa aattctttaa ggttttcatc actataaata tcaactaaac
     7021 gaaaattttc aagtatttct aaattcaatt cttcgataca atttttaatc tgattgtatt
     7081 caaaaccttt aggtattaac acgctaagat ctctagtgat agctgggaat ttggagtaag
     7141 gcttagctat tttaaaatct tgcctgatta aatctaaatc aagttcgcaa atatatgttt
     7201 ttggtaaatc tctctcattt tctattttta aatgcaaacg gcctataaaa cctactttaa
     7261 tatccgatag gtaaatatct gcttgttcat aagggcttaa aatattatat tttgatgatt
     7321 ttagtttaaa atcacctata atatttttaa tgtctaaaag aaaatcataa aattgcaccg
     7381 attcaggttt ggccttgttg gaaattttag cttcttcttt taagccagaa tggataaatg
     7441 cgatacgatt taattcttga ttattaacat tgaaaacagc ccctagttca aaaagtttaa
     7501 taattttttt agaatttttt gcatttaaac ttgctgcatt taacaaatga tttaaaaggg
     7561 ttgttcttaa agtattaagt tctgctgtaa ttggattaat tagttttaat ttaacagagt
     7621 caaaacccaa tcttttaagt tcttcttcat tatccaaaac ataatgtaag ctttcaaaat
     7681 aaccactagc tactgctctt ttccttaaat tcaaaaactc aatataattt ttatatgcag
     7741 aatttaaacg atttttttct ataaattcta aacccttaga agcaatatta tcaataccta
     7801 taattcttac aacttcctcg caaatatctg ataaattttt aatatcagga cgatgtaaag
     7861 gtgctttaac atttataagc ccttcacctg aaagtatgag ttcaaaacct aattttttca
     7921 atatttttaa tacttcatct ttatcaacat tttgccctat tatatcgcca atactttcaa
     7981 tgcttattgg tatgattggt aattctttgt cggttaaaat ttgttgagaa gaactataaa
     8041 taacaagatt tggaatctgc tcaaaaatac taagcaaaaa atccattcct aaatttaatt
     8101 taggttcact tcccctaaag cttctataaa gtgttttttc atcctgatct ttatgataca
     8161 ttttagcatt tgcaattact aatggatcag tataattagc ctcaataata actattttag
     8221 aatcattttt acatttgctt tcatcatttt gaaaaattcc actaaaactc aaaaacttat
     8281 ctttacaaga tacttttgtt tctccatgtg cttgcttagt taaattaatg gtaaattctt
     8341 catcttcccc agaaagacta tttaaatcat aagcattaaa aagaacacca gttgaatgtg
     8401 ttgcataact taataaattt tctatagaat tttttcccaa actctcaatt tgcgcaagtc
     8461 ttaaactaag caataaattt atttgaaatt gaccttttag ttctatggcg cgataattat
     8521 aaagcccatt aagctccttc tcagccgcta aacgcaagat tctaccaata cctaaaacat
     8581 tttcaccttc tttaaatggt tttggttctt ttaaatttaa atttaaagct gtagctaaat
     8641 cacgagcaat accataaata cttaaacaat cacccctatt aggagtaagt tctacttcta
     8701 ttagctcatc gttaaaaatt tcataagtat ttaaagctct cccaagttct aatttcccta
     8761 tactctcatc taaaagcata atcccttcat tggttttttc aaaaccaagt tctaaactag
     8821 aacaaagcat accacaagaa tccactcctc gtaattttgc ttcttttatt tccataccat
     8881 ttggcatgat agcgccttta gttgcaacag ctacaaattg tcctgcatca acattcgcag
     8941 caccgcagac aatttgcaag gtttcacttc cgatatcaac ttgacaaatg cttaatttat
     9001 ctgaattttc atgtttaatt ttttccttaa catagcctac aacaacttta tctggagcct
     9061 ttaaagcact aaccctatca acttctatgc ctatggagtt taaagtttta gctattttat
     9121 ctgaacttat ttcttcgagt tccaaccaat cattcaacca acttctagta attatcatct
     9181 aaactgctcc aataatctca aatcaccttc aaataaagat cttaaatctg gaatttgatg
     9241 taaaagcatt gcaaaacgct ctactcccaa tccaaaagca taaccactta cattttcata
     9301 gccaacaaaa ttataaacat taggatcaac tattccacat cctaaaactt caagccaacc
     9361 tgtatgttta caaaccctac aaccctttcc tttgcaaaat acacaagaaa tatcaacttc
     9421 agcagaaggt tctgtaaatg ggaaaaaact tggacgaaaa cgaactttca catctccaaa
     9481 catatagcgc aaaaaatctt ccaatacact ttttaaattt gcaaagctaa ccttttgccc
     9541 ctcttccaca acaaggcctt caacttgatg aaacatagga gtatgcgtaa tatcaaaatc
     9601 ccttctaaat acagcaccag gggctatcat cctaatagga ggtttttgtg caagcattgt
     9661 ccgtatttgc actggtgaag tttgtgttct taaaagcctt ttatcatcaa aataaaaggt
     9721 atcttgcata tctcttgcag ggtgagattt aggtaaattt aacgcttcaa aattatggaa
     9781 gtcatcttct attaaaggcc ctttttctat gctaaaattc aaagctataa aatactctat
     9841 gattttatcc atggtactca taacaggatg caaggcacct gttgtaatac tttcatcaaa
     9901 atagttaaaa tttaaagcat cttgtttcat tctttcttct aaagcaagat tttccaaatc
     9961 tttaaatttg gctaaataag cctcattaaa tatttctttt tgtgcattta gtttagcagc
    10021 aaattctttt tttgcaccat cttctaactc tttaagcttt gtaaagcctt ctgttaaaat
    10081 accttttttt ccgagaacgg aaatcctaat ggcttccaaa tcatttaaat tctcacattt
    10141 ttgaatctgt tctataaaat tttgcaattt tcttacctta aataaaatat ttcaagttct
    10201 aattctatta aaaactattt taaattcagc ataaaaacca aactttaaag atataattgt
    10261 atcaaaccaa caataaaaaa ggataaataa tgcaagaaaa aacaattttt gaactcatag
    10321 ttgaaggtaa acttccatgc aataaagtgc ttgaaagtga cgattttcta gcatttcatg
    10381 atattgcacc caaagcacct atacatatac ttataatccc taaaaaacat tttaaagact
    10441 ttcaagaatt tgatcctgaa cttatggcca aaatgacaag ttttatacaa gaattagctg
    10501 ttcttttagg cgtagataaa agtggatatc gcttagtaac aaactgtgga aaaaatagcg
    10561 gacaagaagt ttttcatttg cattttcata tgcttggagg ttttgaactg cctaaggaaa
    10621 aaacaaaaaa agaaaatcct caagctttat tttaatttaa atggtagaaa aactaccatt
    10681 taaattattt tatcagaggt agcaacattc cctcgtataa tttttgataa atttcatcac
    10741 cgcataactt tttagctagt tctaaaccaa aaagaattgc cgtagctgga cctgctgaag
    10801 ttataacatt tttatttaca actacagcct tgttaacacg atttccatta agtccaactt
    10861 cacaactagg atagcaagca aactcgccct ctaaaacacc tgcttcattt aagactatag
    10921 gagaagcaca gattgcggca acaattttat ttttgctgtg aagttgttta atgatattta
    10981 aaataacatt tgaattctta agattcatca taccttcaaa gccacccgcc aaagcaatag
    11041 catctaaatt ttctatatca acatcctcta tagaacaatc tgcttttata ctaatgctat
    11101 tagcaccttt taccaataac tcactgttta acgaagctat aacaacttcc aaatctggat
    11161 ttaattcttt tgctcgtttt aaaacatccg caattcctat aaattcagct tcttcaaaac
    11221 cttgagccaa tggaattaat acttttttac tcattttgtt ctcctttttt atatttttta
    11281 aatctttctt ctctttcttt gtttttttgc atcatttgat gattgaaacc tatgaccaaa
    11341 acaatcatta aaaacacaaa aataactatt agaatgaaat ctaaaatttc cataaataca
    11401 accttatttt tgggaaattc taacacattt ttttaaatct ttagagaaaa ttcaaagata
    11461 tttctataaa atcttt
//
LOCUS       DAZAND010000058        11176 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.058, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000058 DAZAND010000000
VERSION     DAZAND010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11176
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.058"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..1215)
                     /locus_tag="ACHDOB_001159"
     CDS             complement(<1..1215)
                     /locus_tag="ACHDOB_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsS family sensor histidine kinase"
                     /protein_id="HFN3326082.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLNDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYF"
     gene            complement(1212..1886)
                     /locus_tag="ACHDOB_001160"
     CDS             complement(1212..1886)
                     /locus_tag="ACHDOB_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HFN3326083.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIISSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(1962..3380)
                     /gene="htrA"
                     /locus_tag="ACHDOB_001161"
     CDS             complement(1962..3380)
                     /gene="htrA"
                     /locus_tag="ACHDOB_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HFN3326084.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTTTANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDTEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTISALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKIIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGAQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            3580..4473
                     /locus_tag="ACHDOB_001162"
     CDS             3580..4473
                     /locus_tag="ACHDOB_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HFN3326085.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNAGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEENLDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            4489..4863
                     /gene="hspR"
                     /locus_tag="ACHDOB_001163"
     CDS             4489..4863
                     /gene="hspR"
                     /locus_tag="ACHDOB_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HFN3326086.1"
                     /translation="MEHHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDHIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            4870..6495
                     /locus_tag="ACHDOB_001164"
     CDS             4870..6495
                     /locus_tag="ACHDOB_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HFN3326087.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTTLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            6505..6837
                     /locus_tag="ACHDOB_001165"
     CDS             6505..6837
                     /locus_tag="ACHDOB_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326088.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKSELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            6834..7454
                     /locus_tag="ACHDOB_001166"
     CDS             6834..7454
                     /locus_tag="ACHDOB_001166"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFN3326089.1"
                     /translation="MINVFFDMDGTLIDSANAISCTVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHQIIPYFDKILGVNLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKDLKENEFSNASELKGFLEKYL"
     gene            7510..9504
                     /gene="glyS"
                     /locus_tag="ACHDOB_001167"
     CDS             7510..9504
                     /gene="glyS"
                     /locus_tag="ACHDOB_001167"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HFN3326090.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWKNVLEEYRLVNDFKF
                     YYTPRRLVFFHENFAEKQEDSFAEFIGAPKNVTYKDGVLTPAGQSFLQKAGISENELT
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMIEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSAKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPGEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYEICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSSHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            9501..10322
                     /locus_tag="ACHDOB_001168"
     CDS             9501..10322
                     /locus_tag="ACHDOB_001168"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HFN3326091.1"
                     /translation="MKALWILLSLTLWLFGAQNLELIKGQALFLELDKKNFLSLKNND
                     KNIPTFAHPKNQEKILAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTIQERIAKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAATGTPIYAANSGVVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKVGQKIKKGELIGLSGASGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            10319..>11176
                     /locus_tag="ACHDOB_001169"
     CDS             10319..>11176
                     /locus_tag="ACHDOB_001169"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HFN3326092.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQLPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFVIEPHEKLR
                     TLQKKTLEGVEFTHKDSLKECHFKNAFFFCNELFDSFACELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLKKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLALMDFGFE
                     DLLKYTKNKN"
BASE COUNT         4074 a         1700 c         1645 g         3757 t
ORIGIN      
        1 aaaataaaac aaatttaccc catcttcata taaataatca agcttcattc catgtgtttc
       61 taaaatagta tttacaatat aaagccctaa tccaaaactt gatttttgtt ttgatccttg
      121 agtaaaagct tgagtatagt attctaaagt attgttaagc tcaggaccac gatttttaaa
      181 acaaatataa tcatctataa tatcaatttg cacaaaccca tcttcagaat gtttaatacc
      241 attatctatc atatttttaa tcgccgtagt aaaaagttta aaatccacat ttacaaaaaa
      301 actttcttcc ataaaaatac gtatattgct atcatctcgc attgcaattt ctttggcttc
      361 atctaaaaca tctaaaatat tgtatttttt tctatttata aaagcagccc ctgaagtaat
      421 ttgctcaata gcagcaaatt cattaattaa aatttcaagt ctagtaaaaa ccccatttaa
      481 gcgctcttta tatttattat cttctatcat ttctaaagtt aaaagcccct tagtaatagg
      541 agttttgagt tcatgcataa tatttcttaa aaaaaactga cgagattggt ttagctttcg
      601 aatttgaaca atggcttgat aaaaagcttc acttacttgt gaaatttcat ccaccccagt
      661 gcttacatct tctatatcgt taagctttcc ttgggcaaat ttatcaattt gttttttaag
      721 tcttttaagt ggttttaatt ttttaaatat ataaatataa agcaatacaa gaatacaaat
      781 cacagctaca gctatagctt tgataataaa atacctatag gtttgataat cttgatcctt
      841 ataaagataa acctttccat cataaataat atttaaatac acctgtctat tataagaaat
      901 aatctcgatt aagccattat taacctcaac cctagctaaa acatcacctc taaaaagaat
      961 tttacggatc tgctttgctt ctgttatctc atccatttta ttataatttt ttgtctgctc
     1021 ttcaaattct ttttcgctga taactcctgc aaaatttaag agccttgcat tagctatcaa
     1081 agaatatttt gtatttaatt ctctagtata attttgctga tcgtattcta taagccacaa
     1141 aaagccaagt ataacactaa ccccagcaaa aataaaaata aaagttatag tataaaaaat
     1201 cgaagattta ttcattgagt aagcttataa cctattccac gtatagagtg aatatatttt
     1261 ggagtttttg gatcatctcc catcttttga cgaattctac tgataataac gtctatactt
     1321 ttattactag aatcctcact aatagaagaa caattataaa caagctcttc acgacttacc
     1381 actccaccct cttttttaat caaatagctt aaaatatcaa attcagcatt agttaaagta
     1441 agctcttgtc ctttcatggt aataatatgc ttatattgat cataaacaag atcttttaca
     1501 ctttttgcta tggcgctttt tgtatttgaa atacgtctta aatgactttt aatacgtgct
     1561 tgtaattctt ttggattata aggttttggt aggtaatcat ctgctccaag ctctaaagca
     1621 ttaaccttat ctgtaatatc atgtcttgca cttgaaataa taataggcgt atcatacttt
     1681 ttacgaatct cttcacacac ttcaagccca tcaagtcctg gcaaagaaag gtctaaaatg
     1741 ataagctgat actcttttaa tgcgagctta gaaaggccta tataaggctc atgagctata
     1801 tcaactttca tatcaaattt ttccaaatat tcagctgtaa tttctgctaa ttctaaatcg
     1861 tcttctatca taagaatatt tgtcatagtt ttcctttatt ttaaacttaa ttttaatttt
     1921 aaactaaaat ttataacgaa aggaaaatcc ttccgttatt tttatttaag cacaagcaaa
     1981 gtcgcaaaac cattgcgata tacccaaact ttggtaaatt cttttttatt aacttgtttt
     2041 aaagcttgtt ctaaatcttt taaattttta atttcgcttt gtccaacacc tatgataata
     2101 tcaccctctt ggaaaccaga attttttcct ttgctctttt ctttaacact atcaaccaaa
     2161 acaccattaa catcttttgg aatttgcaaa cgatccttaa gtcttggatc taaatttctc
     2221 aaactcaaac catcaatcag atcactttgt gcgcctttag gattttcttt ttcaccttta
     2281 agaataaaac ttgcttgctt attttctcca tctctttcgt aacttaatga aattttttga
     2341 ccaatctcta aagttcctat ataattttta agatcaatag gactttttat aatcttatca
     2401 ttaactttag taactaaatc tccacgctta agccctgctt catcagcact tgaacctttt
     2461 tgaacatcag taattaaagc tccttcttga tttttgtaag cttttttagt atcaccttgc
     2521 aaagctgaaa tagtcacacc taaaaatcct ctatcaatct tgcctttttc aataagtttt
     2581 ttagctatat ctttaaccat atttgaaggt atagcaaaac ctatgccgtt atttccaccg
     2641 ccacgagaaa gaatagctga attaatacct actaaatatc cacgactatc caccaaagct
     2701 ccacctgaat ttcctggatt gatagaagca tctgtttgta taaaattttc atattgattt
     2761 aaacctatat tgtctttgtt taaagcagat attatcccac ttgtaacact aaaaccgact
     2821 ccaaaaggat ttccaagtgc aaaaacaaca tctccttcca ttaaatcatc agaatttgta
     2881 aaagtaatag ctgaaagatt attagcctct atttttataa cagccaaatc tgtttttgga
     2941 tctttaccta taagttttgc tttatattct gtatcgcttc ctggtaaatt cactgtaatc
     3001 gtatcagcat catctacaac gtgattattt gttactatat aaccatcttt tgaaataatc
     3061 acccctgatc ccaaagaact caccacttct ttatcatttt ttccttttct ttgaggaaaa
     3121 tcaaaatcaa aaaattgttt aaaataagga tcattaaaga aatcatccaa aggacttgga
     3181 cgattcgctc ttgtaatagt ttttgaggtg gaaatattaa ccactgattt ttttgcatct
     3241 ttaatagaat catgataaga aagcactgca tttccagcag caggattcac acgattagcc
     3301 gttgtggtcg attcgttaaa attaatactt gcagcaaata aagcacttgc taaacttaat
     3361 gataaaaaaa tctttttcat ttcatttcct tttgttctta aagataaatt atctcgtaaa
     3421 atattttact gtcttcatag tataaaaccg aaaatttaca aaattgtaaa taaaaccttg
     3481 agtgataaaa atttataaaa cttgattgac ttaggctaaa gtttatgtta taatttaatc
     3541 ctttatataa tcaagtaaaa atttttaagg aaatataaca tgaatagttt atacgaaact
     3601 cttggagtta gcaaaaatgc tagtgcagat gaaataaaaa aagcttaccg tcgcctagct
     3661 agaaaatatc atcctgatat caacaaagaa aaaggcgcag aagaaaaatt taaagaaatt
     3721 aatgctgctt atgaaatttt aagtgacgaa aaaaaacgag ctcagtatga ccaatacggc
     3781 gattctatgt ttggtggaca aagttttcat gatttttcaa gaaatgctgg tggggtaaat
     3841 ttagacgata ttttaaaaga tctctttgga ggaggctttg gtggacgctc aagagggggt
     3901 tttaacggct tttcttcaaa aggctttagc agtggttttg gaggatttgg aggttttgaa
     3961 gaagaaaatt tagacagcaa tctagagctt cacattcctt tcgaaaaagc tgttaaaggc
     4021 ggggaacata gttttaattt tcaaggcgaa accattaaat ttaaaattcc acacggtata
     4081 aaagaaggcg agaaactaag aattcgctct aaaggaaaac aaagcagaaa tggagctaga
     4141 ggcgatttaa tcattattgt aaaaatagaa gaaagtccta tttacacaag agaagatgat
     4201 gatttatatc aaaaggttga tatttcttta aaaactgcac tttttggtgg aaaaataaat
     4261 ataaaaacac tcaaagaagg taaggaagaa gcgacaatta acataacgcc taattcaaaa
     4321 aataaccaaa aaattcgttt aaaaggttat ggggtgcaaa atagaaaaag tgatatttat
     4381 ggggatatgt atttgatttt aaatgttgtt ttgccaaatt tagatactct tgatgaaaaa
     4441 tttatagaac tcttaaaaga aaaattacct taaagaaagg aataaaatat ggaacaccat
     4501 tatgatgaac ctgtatattt aatcagtgtt gtggctaaag ttttaagcat acatccacaa
     4561 accttaaggc aatacgaaag agaaggattg atagagccaa gtagaaccga tggcaaaata
     4621 agactttatt ctcaaaggga tattgatcat attaaactta tattgcgttt aacaagagac
     4681 atgggaatca atcttgctgg agtagatgtt atcttaaaat tgaaaaacca acttcacgaa
     4741 tttgaaaatt taattgatga actacgctta gaattaagca aacaacaaga taaagaagcg
     4801 gctagtaaag ccgttgtcaa gcataaaaat agctttgatt tgatttttta tgagaaaaaa
     4861 taaaaaataa tggataattt tttagaaatt tttttaatca ccgttgctat agctatagtt
     4921 ttaaatgtca tatttaaaaa atttgaaatt ccaactatca ttggatatat agctgctgga
     4981 gaaatcattt ctgaaattta tcatttaagt ggcaaaggcg aaatcaccca tatagccgaa
     5041 tttggtatag tgtttttaat gtttaccata gggcttgaat tttcttttaa gcatttaatg
     5101 gcaatgaaac aagaagtttt tttaaacggc tctttgcaga tgcttacttg tggctttgtt
     5161 tttatgctac ttgctatagg aattttagga cttggagata aaagcgctac catagtaggc
     5221 tttgcactag cactttcttc aactgcagtg gtgcttaaaa ttttaaatga taatggcgat
     5281 ataaatgagc aatatggcag aaaagcattg ggaattttgc tttttcagga tatagccgtt
     5341 attcctttgc ttttgcttgt agatattttt tcatccaaca atcaaaacat agaaaaactc
     5401 ctttttacca ctttaatttc agcacttatt ttaatcactt tattattttt cataggtaaa
     5461 tatctagtgg atagaatttt tagactcatt atccacactt cttctcagga aatttttatc
     5521 agtacagttt tatttatggt tattggagca agttttttag caaattattt tggattttct
     5581 tattctttgg gtgcttttat agcaggtgct ttgatagcag aaacaaaata taaacacaaa
     5641 atagaagcgg acttgatccc atttagagat ttgcttttag ggcttttttt cataactgta
     5701 ggcatgcaaa ttcaacttga tgtagtagcg caaaattggt ttttaatcat agttttaacc
     5761 cttcttgtaa tggctttaaa atttggcata gtttttggct ttttatttct ttacaccaaa
     5821 aaaagagtag cgcttaaaac agcttttgcc atagcgcaaa ttggagaatt cgccctagca
     5881 attttttctc ttttacaagc aaaaaatatg cttgatatca aaacttcaca aattttaatt
     5941 gttgtttcta ttttaaccat gattatcaca ccttttattt taaacaatat aagaaaaatt
     6001 accaatgttg tagaagatat agcacttaat accaacgctg tgcaaaatat tgacagcaat
     6061 atcaagctta aaaatcatct tgttgttttt ggctacggac gtttaggtca agaagtcgta
     6121 caaaaaatca aaaacacagg cgtaccttat cttgttttag aaagtgattt aaatttagta
     6181 gaacttggag ttagtcgggg tgaaaatgtc gtttttgcca atgctgctca agaagaaacc
     6241 ttaaaaattg ccaatataga agaatgtgcc gtagctatta tcacagttac aaatgaagct
     6301 aaacttgaaa ttttatgtca agtgctagct aattatccaa aacctataga tactatcatt
     6361 catgtaaatg gaactttgaa aaagatgctt ttttctagca tagatgaaaa tatacgcatc
     6421 attcgctctg aaaaagtaat cgctagaaat ttagttcaag aagcactaga atgccgcatt
     6481 cataaaaata cctaaggaag aattttgaca aaaaatgaag aaaaagcctt acgcgtaaaa
     6541 tacctaagaa atcttgaaaa atttttcaat ggcgctatat ctgcacttaa aaaagaagat
     6601 tttgataaaa ctaaatttga agaaagaatg ttaaaaaatg ctaaattttt tgaaaaaaat
     6661 cccgcggtaa atcttaactc aacttacgca aaaaatcttg aattttttgt caatgcttgt
     6721 ttagattttt ccaaagaaaa aagcgaactt ttaaatcttg ccaatgcttt agataagcaa
     6781 aaaaaacaag gtgaaaaaaa agaaaaacat aaaaattatt taaaggatta tgaatgatta
     6841 atgtattttt tgatatggat ggaactttaa tcgatagcgc aaatgccatt tcttgtacag
     6901 tcaatgaaat aagacaggat ttaaacctag ccccactttc aagagaaatc attatgcaaa
     6961 ccatcaatac tcctaatatt gactgggcaa aagaacttta taatatagaa aatttccatc
     7021 attctagttt taaagaaggc tatgaaaaat attttgtcaa acactatgaa caaagcgtgg
     7081 tgctttttga aggggtgaaa gaacttttgg aatttttaaa aagcaaaaat tgttttttag
     7141 ctattgctac taacgccccg caaagctcac tttcaaacat acttaaaaaa catcaaatca
     7201 ttccttattt tgataaaatt ttaggcgtaa acttgggcat agaacccaaa cctcatccta
     7261 tgatgctaga gcttttaaaa agtgaggctc catataaaac aagcgttttt ataggggata
     7321 gtcaaaaaga taaagaatgt gctaaaaatg ctaatttgcc ttattttcat gccaaatggt
     7381 atcaaaaaga tttaaaagaa aatgaattta gcaacgctag tgaacttaaa ggttttttgg
     7441 aaaagtattt ataagttttt taatgaaatt ttagttaaaa ttagaaataa attttaaaaa
     7501 gagtaaatta tgagtgaatt attaatagaa attggcacag aagaattacc tgctattcct
     7561 ttgctaaaag aattagctaa tatagaaaaa aaatggaaaa atgttttaga agaataccgc
     7621 ttggtaaatg attttaaatt ttattatact ccgcgtcgtt tagttttttt tcatgaaaat
     7681 tttgcagaaa aacaagaaga tagctttgct gaatttatag gagcacctaa aaatgtcacc
     7741 tataaagatg gggttttaac tcctgcgggg caaagcttcc tacaaaaagc agggatcagt
     7801 gaaaatgaac tcacttttaa agaaatcaaa ggcaaggaag ttttatacca tcaaaaagct
     7861 attaaaggtt tacaaagtca agaaatttta ggagaaatga tagaaaaatt tctaaaaagt
     7921 cttagttttg gcaaaagtat gcgctggggt gcaaattctt ttgaattcat ccgtgcgatc
     7981 cgttctatag cttgcatttt aaatgatgaa cttgtaaatt ttcaaagtta tggggtaaaa
     8041 agtgctaaaa aaactttcat tcacagaagt gtaagttatg atttgcaaga ttttaacaat
     8101 gcaaaagaat attttgaact actagaaaaa aactatatta tccttgatcc aatcaaaaga
     8161 aaagaaaaaa tacttgagca atttaaactc atagaaagtc aaaaaaatat acaaattgga
     8221 gaggatgaag aacttttagc tgaagtagtt gctatcacag aataccctaa tgcactttta
     8281 ggaagctttg aagaagaatt tttagaaatt cctggcgaag taatcatcac ttcaatgaga
     8341 gaaaatcaac gttattttgc agtttttaac gataaaggct taagtaatca ttttatagta
     8401 gtaagcaatg cagtatgtaa agattattca aaaatcatac atggaaatga aagagttttg
     8461 cgtgcaagac ttagcgatgc aatgtttttt tatcaaaatg atttacaaaa tggtttaaaa
     8521 cctgaaaaac ttgccaaaat gacctatctt gaaggtttag gcacaatgca agataaaagt
     8581 ttaagagaga ttaaaattgc tgaaatttta tgtcaaatgc ttcataatga taaaatcgaa
     8641 aatatcagca cagcactaaa atacgccaaa gcagacttag ccacacaaat ggtttatgaa
     8701 tttactgatt tgcaaggcat tatgggaagt tattatgcgc aaaaaatggg cttagattat
     8761 gaaatttgct tagccatcaa agaacaatat cttcctaatt ccgaacaagc tccacttcca
     8821 agcacggaat tttcaagcat agtagccctt gcaaacaagc ttgataccct tataggactt
     8881 tttagcatag gaaaaattcc aagcggaaca aaggatcctt atgccttaag aagagcagcc
     8941 aatgggatca ttaaaatcgc tctaaattta aataaagaat ttgatatcca aattttatta
     9001 gaaaaacttt caagtcatta taaaagcttt gatatgcaaa ttttaaaaga ttttattttt
     9061 gaaagacttt atacttttta tacggtcaat gcttcttttg taaaagcggt tttaagctca
     9121 caaaatacag atcttatcca tatcaatcaa agcgtaaatg ctcttataaa acttagcaaa
     9181 aaagataatt ttaatgaaaa ttttgcaacc tttaaaagac tagccaatat cgccactaaa
     9241 aatcctcata aagttgatga aagtcttttt gttcaagaag cagaaagtaa actttacaaa
     9301 gcttttcaag aaaaaactaa agccaactct ttacaagaaa aacttgaaaa tctttttgca
     9361 cttaagcctt ttattgatga gttttttaat caagtgatga ttaatgctga agatgaaaaa
     9421 cttaaaaata atcgccaagc tttggtttat gaaatttatg cggagttttt aaaaatcgcc
     9481 gatcttaaag agttaagcct atgaaagcct tatggattct tttaagcctt actctttggc
     9541 tttttggagc tcaaaattta gaactcatca aaggtcaagc tttatttttg gaactagata
     9601 agaaaaattt tttatcttta aaaaataatg ataaaaatat tcccacattt gcgcatccta
     9661 aaaatcaaga aaaaattcta gctatttttt ccctacctta caaaaatccc ccgcaaaata
     9721 caaaacttat cgcattttat aaagataaaa aagaagaaat tttcataaaa actttagaag
     9781 gtaattataa aagtgaaaaa ttgcaagttg aaaacaaaaa gatttttcca ccaaaaacca
     9841 tacaagaacg catcgctaaa gaattaaaag aagccaatgc gatttatagt tcttatactc
     9901 caaaagcttt atttaacggt gcttttaata tacctttaaa ttcttttatc acaagtgatt
     9961 ttggcaaagc aagaactttt aatgaaaaag tagcaagtta tcatagtgga acggacttta
    10021 gagccgccac aggaacgcct atttatgcag ccaattcagg tgtagtaaaa attgcaaaag
    10081 atcgttattt cgcaggaaat tcagtagtca ttgatcatgg ttttggaatt tattcacaat
    10141 attatcatct ttctaaaatc gatgttaaag taggacaaaa gataaaaaaa ggtgaactta
    10201 taggacttag tggggctagt ggtagggtaa gtgggccgca tttgcatttt ggaattttag
    10261 ctggaggcaa acaagttgat cctttggatt ttgtatccaa atttaatgct atttttcaat
    10321 gaaatttagt gactttttcc atgcttggct ccatgaaagc tattataaaa atgctgtaag
    10381 tataggaaaa aacggagatt tttttactgc tgtaagcgta ggaaatcttt ttggcacact
    10441 tttagccaag cattttttaa atttaataga taaaaaaatt ttacaactcc ctttagaact
    10501 tgtagaaata ggtgctaatg aaggatattt aagtcgtgat tttttagccg ctttgcttga
    10561 attaagacct gaaatttttt ctcaaatttc ttttttcgtc atagaaccgc atgaaaaatt
    10621 aagaacttta caaaaaaaga ctttagaagg agtggaattt actcacaaag atagtcttaa
    10681 agaatgccat tttaagaacg cttttttctt ttgcaatgaa ctttttgata gttttgcttg
    10741 cgaacttata gatcatgata aaatggcatt tgtagaaaat tttaaactta tttttaaaaa
    10801 tatggatgaa aatttaatca caaaatgcaa agctttaaat cttaaaaaag gtgaactcag
    10861 tttagagctt gaaaattttt ttaaagattt aaaccaaact tgtgagagat ttatatttgc
    10921 gggatttgac tatggaactt taaatccaca aagttttagc ttaagaatct atcaaaagca
    10981 cgaagttttt agcccttttg aagtatcttt aaaagatttt ttcggcaaaa gcgatctaac
    11041 ttataatgtc aattttactc atcttcaaaa actcatcaaa gaatatgatt ttaaaccttt
    11101 agcttttaaa aaacaaagtc ttgctttaat ggattttggt tttgaagatt tattaaaata
    11161 cacaaaaaat aaaaac
//
LOCUS       DAZAND010000059        11015 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.059, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000059 DAZAND010000000
VERSION     DAZAND010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11015
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.059"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..524
                     /gene="pglA"
                     /locus_tag="ACHDOB_001170"
     CDS             <1..524
                     /gene="pglA"
                     /locus_tag="ACHDOB_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HFN3326093.1"
                     /translation="PIVLMIARALWHKGVKEFYESATMLKDKANFVLVGGRDENPSCA
                     SLEFLNSGVVHYLGARSDIVELLQNCDIFVLPSYKEGFPVSVLEAKACGKAIVVSDCE
                     GCVEAISNAYDGLWAKTKNAKDLSEKISLLLEDEKLRLNLAKNAAQDALQYDENNIAQ
                     RYLKLYDRVIKNV"
     gene            517..1119
                     /gene="pglC"
                     /locus_tag="ACHDOB_001171"
     CDS             517..1119
                     /gene="pglC"
                     /locus_tag="ACHDOB_001171"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HFN3326094.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLSLYNEEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            1106..1696
                     /gene="pglD"
                     /locus_tag="ACHDOB_001172"
     CDS             1106..1696
                     /gene="pglD"
                     /locus_tag="ACHDOB_001172"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HFN3326095.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFEN
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSASVEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKSQNEKGVFVGVPAKRKI"
     gene            1794..2954
                     /gene="pglE"
                     /locus_tag="ACHDOB_001173"
     CDS             1794..2954
                     /gene="pglE"
                     /locus_tag="ACHDOB_001173"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HFN3326096.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKKCEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEYFSFLDELENS
                     RSNRWLSTALIDFDKNELNACQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHTQEVFKGTKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            2956..4728
                     /gene="pglF"
                     /locus_tag="ACHDOB_001174"
     CDS             2956..4728
                     /gene="pglF"
                     /locus_tag="ACHDOB_001174"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HFN3326097.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSKMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFVVEEKEKIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGI"
     gene            4728..5621
                     /locus_tag="ACHDOB_001175"
     CDS             4728..5621
                     /locus_tag="ACHDOB_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HFN3326098.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLKRCVL
                     SDPYPSVLNNELCVTASIPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     LVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            5734..6126
                     /locus_tag="ACHDOB_001176"
     CDS             5734..6126
                     /locus_tag="ACHDOB_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HFN3326099.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            6149..6994
                     /locus_tag="ACHDOB_001177"
     CDS             6149..6994
                     /locus_tag="ACHDOB_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HFN3326100.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEELSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNFINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            6998..8935
                     /gene="ftsH"
                     /locus_tag="ACHDOB_001178"
     CDS             6998..8935
                     /gene="ftsH"
                     /locus_tag="ACHDOB_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HFN3326101.1"
                     /translation="MNNNTPNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            8932..9549
                     /locus_tag="ACHDOB_001179"
     CDS             8932..9549
                     /locus_tag="ACHDOB_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HFN3326102.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            9559..10287
                     /gene="pssA"
                     /locus_tag="ACHDOB_001180"
     CDS             9559..10287
                     /gene="pssA"
                     /locus_tag="ACHDOB_001180"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003882 - CDP-diacylglycerol-serine
                     O-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HFN3326103.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(10278..>11015)
                     /locus_tag="ACHDOB_001181"
     CDS             complement(10278..>11015)
                     /locus_tag="ACHDOB_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HFN3326104.1"
                     /translation="KFHSFQNFYEDFKSHKFIFNHEHQSIFKKNTSQQITLLHPTRIR
                     RPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYDWLEVADEEIKHF
                     KLLNSALEELGYKYGDFPVHDNLESALEATKDSLSFRMGIVHRGLEAKGLDANPFVVQ
                     KLQSSNHFIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNKYDFIELCKTFKQFSLA
                     GKKLNIQARIKAGFTQEECEVIEKFYS"
BASE COUNT         3756 a         1256 c         2166 g         3837 t
ORIGIN      
        1 aacctattgt tcttatgata gcaagagctt tatggcataa aggtgtaaaa gaattttatg
       61 aaagtgctac tatgctaaaa gacaaagcaa attttgtttt agttggtgga agagatgaaa
      121 atccttcttg tgcgagtttg gagtttttaa actcgggtgt ggtgcattat ttgggtgcta
      181 gaagtgatat agtcgagctt ttgcaaaatt gtgatatttt tgttttacca agctataaag
      241 aaggctttcc tgtaagtgtt ttggaggcaa aagcttgtgg caaggctata gtggtgagtg
      301 attgtgaagg ttgtgtagag gctatttcta atgcttatga tggactttgg gcaaaaacaa
      361 aaaatgctaa ggatttaagc gaaaaaattt cacttttatt agaagatgaa aaattaagat
      421 taaatttagc taaaaatgct gcccaagatg ctttacaata cgatgaaaat aatatcgcac
      481 agcgttattt aaaactttat gatagggtaa ttaagaatgt atgaaaaagt ttttaaaaga
      541 atttttgatt ttattttagc tttagtgctt ttagtacttt tttctccggt gattttaatc
      601 actgctttac ttttaaaaat cactcaagga agtgtgattt tcactcaaaa tcgccctggg
      661 ttagatgaaa aaatttttaa aatttataaa tttaaaacca tgagcgatga aagagatgag
      721 aagggtgagt tattaagcga tgaattgcgt ttgaaagcct ttggaaaaat tgttagaagc
      781 ttaagtttgg atgagctttt gcaacttttt aatgttttaa aaggggatat gagttttgtg
      841 gggcctagac ctcttttggt tgagtattta tccctttata atgaagagca aaaattgcgc
      901 cataaggtgc gtccaggtat aacaggatgg gcgcaggtaa atggcagaaa tgctatttct
      961 tggcagaaaa aattcgaact tgatgtgtat tatgtgaaaa atatttcttt tttacttgat
     1021 ttaaaaatca tgtttttaac agctttaaag gttttaaaac gaagcggggt aagcaaagaa
     1081 ggccatgtta caacagagaa atttaatggc aagaactgaa aaaatttata tttatggtgc
     1141 tagtggtcat gggcttgttt gtgaagatgt ggctaaaaat atgggctata aagaatgtat
     1201 ttttttagat gattttaaag gaatgaaatt tgaaaacacc ttgcctaaat atgatttttt
     1261 tatagctata ggaaacaatg aaattcgaaa aaagatttat caaaaaattt cagaaaatgg
     1321 ctttaaaata gttaatctta ttcataaaag tgcacttata agtcctagtg caagcgtgga
     1381 agaaaatgca gggattttaa ttatgcccta tgtagtgatt aacgctaaag ccaaaataga
     1441 aaaaggcgtg attttaaata cttcaagtgt gattgagcat gaatgcgtga taggggaatt
     1501 ttctcatgta agcgtagggg ctaaatgtgc gggtaatgta aaaatcggta aaaattgttt
     1561 tttagggatt aattcttgtg ttttgcctaa tttaagctta gcagatgata gtattttggg
     1621 tggtggagca actttggtta aaagccaaaa tgaaaaaggt gtttttgtgg gagtgcctgc
     1681 aaaaagaaaa atatgaaatg attataaaaa gatttttgtt tgattctttg taaatttttt
     1741 taggtaaaat agagttaatt tataaaaatt ttgttttata caaaggataa atcatgagat
     1801 tttttctttc tcctccgcat atgggcggta atgaattaaa atatatagaa gaagttttca
     1861 aaagcaatta tatagcacct ttgggtgaat ttgtaaatcg ctttgagcaa agtgtaaaag
     1921 attatagcaa aagtgaaaat gccttagctt taaattcagc tacagcagct ttgcatttag
     1981 ctttaagggt ggcaggggta aaacaagatg atattgtttt ggcttcttct tttactttta
     2041 tcgcttcagt ggcgcctatt tgttatctta aagcaaaacc tgtatttata gattgtgatg
     2101 aaacttataa tatcgatgta gatttgttaa aacttgctat taagaaatgt gaaaaaaaac
     2161 caaaagcatt gattttaact catctttatg gcaatgcggc taaaatggat gaaattgttg
     2221 aaatttgcaa ggaaaatgaa attgttttaa tcgaagatgc tgctgaagct ttaggaagtt
     2281 tttataagaa taaagcctta ggaacttttg gagaatttgg agcttattct tataatggca
     2341 ataaaattat caccacttca ggtggaggta tgcttatagg aaaaaataaa gaaaagattg
     2401 aaaaagcaag attttatagc actcaagcta gggaaaattg tttgcattat gaacatttag
     2461 actatggtta taattaccgt ttaagcaatg ttttaggagc tattggtgta gcacaaatgg
     2521 aggttttaga acaaagagtg cttaaaaaaa gagaaattta tgagtggtat aaagaatttt
     2581 taggagagta ttttagcttt ttagatgaat tagaaaattc aagaagtaat cgctggttaa
     2641 gtacagcttt gattgatttt gataaaaatg aacttaatgc ttgtcaaaaa gatataaata
     2701 tcagtcaaaa aaatattact ttgcatccaa aaatttcaaa actcatagaa gatttgaaaa
     2761 atgaacaaat agaaacaaga ccattatgga aagctatgca cactcaagaa gtatttaaag
     2821 gaactaaggc ttatcttaat ggcaatagtg agttattttt ccaaaaagga atttgtttgc
     2881 caagtggtac ggcgatgagc aaagatgatg tttatgaaat ttcaaaactg atcttaaaga
     2941 gcataaaggc ttaaaatgat tttttataaa agcaaaagat tagcattttt tttaacttca
     3001 gatattgttt taattttact tagtgtttat ctggcttttt ctttgagatt tagtggagat
     3061 attccgagta ttttttatca tggcatgatg gtttctgcta ttattttgct tgttttaaaa
     3121 ctttcatttt tgtttgtttt tagaatttat aaagtagctt ggagattttt ttccctcaat
     3181 gaagcaagaa aaatttttat cgctttgctt ttagctgagt tttgtttttt tcttattttt
     3241 tattttttta gtgatttttt taatcctttt ccaagaagtg ctattgtgat agattttgtt
     3301 ctttcttata tgtttatagg tactttaaga attagcaaaa gaatgcttgt ggattttaaa
     3361 ccttctaaaa tgaaagaaga agaaactcct tgtattgtag taggggcaac ttctaaggct
     3421 ttacatttgt taaaaggcgc aaaagaaggt tctttagggc tttttcctgt gggcgtagtt
     3481 gatgcgagaa aagagcttat agggacttat tgtgataaat ttgttgtaga agaaaaagaa
     3541 aaaataaaat cttatgtaga acaaggggta aaaactgcca ttattgcttt aagacttgaa
     3601 caagaagagc ttaaaaaact ttttgaagaa cttgtagctt atggtatttg tgatgtaaaa
     3661 atattttctt ttacaagaaa tgaagcaaga gatattagta tagaagactt gcttgctaga
     3721 aaaccaaaag atttagacga tagtgctgtg gcggcttttt taaaagacaa ggtagttttg
     3781 gtaagtggag caggtggaac tataggcagt gaactttgta agcaatgtat taaatttggt
     3841 gctaagcatc ttattatggt tgatcatagt gagtataatc tttataagat caatgatgat
     3901 ttaaatttat ataaagaaaa aattactcct attttgttaa gtattttaga taagcaaagt
     3961 ttagatgagg tattaaaaac ttataaacct gagcttattt tacatgcagc cgcttataaa
     4021 catgtgcctc tttgcgaaca aaatccacat tcagcagtaa tcaataatat tttaggaacc
     4081 aaaattttat gcgacagtgc taaagaaaat aaagtagcta aatttgtgat gataagtaca
     4141 gataaagcag tacgaccaac aaatattatg ggttgcacta agagagtttg tgagctttat
     4201 actttaagta tgagtgatga aaattttgaa gttgcttgtg tgcgttttgg taatgtttta
     4261 ggttctagtg gtagtgtgat accgaaattt aaagcacaaa ttgccaataa tgagccttta
     4321 actttaacac accctgatat agtgcgttat tttatgcttg tggctgaggc agtgcaactt
     4381 gttttgcaag ctggagctat cgcaaaaggg ggagaacttt ttgttttgga tatgggtaag
     4441 cctgtgaaaa tcatagattt agctaaaaaa atgcttttac tttctaatcg caatgattta
     4501 gaaattaaaa tcacaggttt aagaaaaggt gagaagcttt atgaagagct tttgattgat
     4561 gaaaatgatg ctaaaaccca atatgagagt atttttgtag caaagaatga gaaggttgat
     4621 cttgattggc ttaataaaga gatagaaaat ttacaaatat gtgaagatat ttcagaggct
     4681 ttattaaaga ttgtacctga atttaaacac aataaagaag gcatataatg tatataaaag
     4741 atatacaaag atttgaagat aatcgctatc gtgctagagc ttatatgagt tatattttaa
     4801 caagaaatct acccaataaa cttcctgata ttcaccttga aacgattaaa acagctttgg
     4861 ataaaatagc tcatgaagtt gttgtttttg atgctttgta tattttagat atttcaggca
     4921 tgcaaataga aaatgcgatt tccttaaata aggctcatga aatagggcag ggtgaggata
     4981 gaagtactcg ttcttatttt tatagagctg taaaattaaa acgatgtgtt ttgagcgatc
     5041 cttatccttc ggttttaaac aatgaacttt gcgtaacagc ttctatacca atttacgatg
     5101 ataaaaataa cttgcttttt gttgtttgta ttgatatcaa gcttgaagat attttaaaga
     5161 ttattcaagc aggaaaattt gagtttgttt ttactcaatt tagtcgtttg gtgtattttt
     5221 gtttcgcact ggttttattt gtgattactt gttttttatt tcaaaaaggt ttttttagtc
     5281 tttttgataa tcaagctata ggcatagaac atatgtttga aagtaccatt gccataactt
     5341 tagctttagc tatttttgat ttggcaaaaa ctttgatcga acaagaagta ttaggaagga
     5401 caaaaaaaga agaaggtgga attcaaaaaa ccatggtgag atttttgggt tctattatca
     5461 ttgctttagc tatagaagct ttgatgttgg tatttaaact tgctattggt gatctttctc
     5521 agatgattta tgcgatttat cttatcggtg gagtgagctt gcttctttta ggtttaagtg
     5581 tatatttatt tacggttaag tataaaaata ataatatttg agtaaaaatt taagtaaaag
     5641 atgatataat gctgtttttt aaaatttttt agcttgatta ataaggctaa aaagggtaaa
     5701 ataaaactat aaaaactttg aaaggacgaa attgtgaaat tgttagttgt tgatgacagt
     5761 tctactatga gaaggattat taaaaatacc ctaacaagac ttggacacga tgatgtttta
     5821 gaagctgagc atggcgttga agcttgggat ttattaacta aaaatgaaga tgtaaaagtt
     5881 ttaattacag attggaatat gccagaaatg aatggcttgg agttggtaaa aaaagtaaga
     5941 gcagagaaaa aatatgaaga tatgcctatt atcatggtta caactgaggg cggaaaagct
     6001 gaagtgatta ctgctttaaa agctggcgta aataactata ttgtaaaacc ttttactcca
     6061 caagttttaa aggaaaaact tgaagatgtt ttaggaacag gaagtggaga aggtgcagct
     6121 gagtaaaggc tgatttttaa aattctaaat gcaaaaaaaa tattacgaat tgttctttat
     6181 cgtagaagag cggtataaaa atttatttct tgattttgct tttgatttag gtatagaagc
     6241 catagaagag aaagataatg gtgtttacat tagatcccat gagagtttgg aagagctttc
     6301 atgggcactt gaaatatttg ctcaaaaact tacaactact ttcaatttaa accataaaat
     6361 tatttctaat ttaagtcttg tagagaaaga aaacaaggac tggatacaag aatataaaaa
     6421 aggcataaaa cctattttag tggataatgt ttacatccat accacttggc aagaagaaaa
     6481 aaagaatttt ataaatataa agattaatcc agccttagcc tttggctcag gacatcacga
     6541 aagcacatat tcttgtgtaa aatttttaca aaaattttct aaaagtaaat taagagcttt
     6601 agatcttggt tgtggtagtg gaattttggg tattattatg gcaaagtttg gctgcaatgt
     6661 tgaaatttgt gatactgatg agttggctat tgatagttct ttagaaaatg caagattaaa
     6721 tggtgttgat tttcacaagg cttggtgtgg atctatagat aaagcaaatg gtttatataa
     6781 tctaattgtt gcaaatatca ttgcagatgt gattttaatt ttagaaaaag atattaaaaa
     6841 ccatttagaa gataatgcta tacttatttt gtcaggaatt ttagataaat attcaacaag
     6901 aattaaagaa aaatttcaag atttggaact cattgatgaa atgcaaatca atgagtggtg
     6961 tagttttgta tataaaaata ataaaaaagg ataagtaatg aataataata ccccaaataa
     7021 taagggtaat ccgcagggta ataatttttt taacaaaaat cccattttta tttttgcgat
     7081 ttttgcaatt gtaatgataa ttatttttaa gggatttttt gatggcaatg gttcttttgg
     7141 cggggcattg aatggcaatg aagtaaataa aaatgtccct tattctgagt taaaaaagct
     7201 tattgaaagt ggacaaatca atcaagttag cataggacaa acaacaatca aagcgatttc
     7261 aagctctcac aatactgttt atacagcaaa aaaagttaat gatcctgagc ttgtgagttt
     7321 actagatagt aaaaatatcg cttatggtgc gtattctgaa acaaattggt ttacggatat
     7381 acttttttca tgggttttgc cagtatttat tttctttggt atttggatgt ttttggcaag
     7441 tcgtatgcaa aaaaatatgg gaagttctat attgggtata ggaagttcta agaagcttgt
     7501 aaattcagaa aaacctaaag taaaatttag cgatgtagct ggtgttgaag aagctaaaga
     7561 agaagtaaaa gaaattgtag attttttaaa gtatcctgaa agatatatta aattgggagc
     7621 taaaattcca aaagggcttt tacttgttgg acctccaggt acaggaaaaa ctttgcttgc
     7681 aaaagcagtt gcaggtgaag ctgatgtgcc gttttttagt gtttcaggtt catcttttat
     7741 agaaatgttt gtgggtgtag gtgcttctcg tgtgagagat ttgtttgaaa atgcaaaaaa
     7801 agaagctcct gctattgttt ttatagatga aatagatgct attggtaaaa gtcgtgcagc
     7861 aagtggcatg atgggtggaa acgatgaaag agagcaaact ttaaatcagc ttttggctga
     7921 aatggatggc tttgggacag aaagttcccc agtcattgtt ttagcagcaa caaatcgccc
     7981 agaagtttta gatgcagcgc ttttaagacc aggaaggttt gatagacaag ttttagttga
     8041 taaacctgat tttaaaggta ggtgtgatat tttaaaagtg cacatgaaag atgtcaaaat
     8101 atccccaaaa gttaaagtag aagatatagc acgcttaact gcagggcttg caggagctga
     8161 tcttgcaaat attattaatg aagcagcgct tttagcgggt agggattcta aaaaatatgt
     8221 agaacaaaat gatttagttg aagctgtcga aagagctata gcaggacttg agaagaaatc
     8281 acgtcgtatt aatgaaaaag aaaagaaaat tgttacttat catgaatgtg gtcatgcctt
     8341 gattgctgaa acaaccaaag gcgcaaaacg tgtaagtaag gtttctgtga ttccgcgtgg
     8401 tcttgcggct ttaggttata ctttaaatac tcctgaggaa aataaatttt taatgcaaaa
     8461 acatgaactt atcgctgaag tagatgtact tttgggtggt cgtgcagctg aagaagtgtt
     8521 tataggtgaa atttcaacgg gtgcaagtaa tgatttagaa agagcaaccg atatcataaa
     8581 agctatgatt tctatgtatg gtatgagtga aattgcagga cttatggtgc ttgaaaaaca
     8641 aagaaatact ttcttaagtg gtgggcaaac tataaaagac tattctgaaa agatggcaga
     8701 atctttagat gattatgtaa agaaaacctt agatgaacgc tataaagatg ttaaagatac
     8761 tttaaatact tataagggag cgattgagac tatggttgca gccctttatg aagaagaaac
     8821 tattgaaggt aataaagtgc gtgagattat taaagagttt gaggatcaaa atagtctacc
     8881 aactcgttta caagaactcg aagaagttaa aactgaagtt aaagtagaag aatgaaagat
     8941 tttattgcaa aagatggata tttaagtctt attattttaa gcttaatttt tatttttgtg
     9001 tggatttttt attctttttc catcttgcta ttagcattaa ttgtaatttg tatttttctt
     9061 tttagagcgc ccaaaagaga acttgtttgt agtgatgaaa aagctatttt tgcacctatg
     9121 gatggtaggg ttactaaaat agaaaatatt catcataaag atttgggtga atgtgttgaa
     9181 attactatta aaaacgctct ttatgatgct gggaatttta atacaccttt tgcaatgtct
     9241 ataatagata ttcgtttacg acatgggctt tttttgtgca gtgaattaaa atctgcaaaa
     9301 atgatgaatg aaagagcttt tattttggca aaagttaaag agaataaaac gatagccttg
     9361 cgaatctatg caggttcttt tgatagaaaa ttaaagcttg ataatatttc tcatgattta
     9421 aaagcaggag atagaatggg ttttttaatc aatggctcta taagtttact tttaccaaaa
     9481 gatactagaa ttcatatagg cttaaatgat gaaattaaag caggctcatt gctaggctat
     9541 tttgcgtaag gaaaaataat gaataacaga ccgcaattaa tttatatttt acccaatctt
     9601 tttacagctg cttcagcttt tttaggggtt atttctatta tagcttcaat acatggaaat
     9661 tattatacag ctttgattta tattatttta tctttgattt gcgatgggct tgatggccgt
     9721 gttgcaagac ttacaaattc tacttcaaaa tttggagtag aatttgattc tttagctgat
     9781 ctagtagctt ttggagttgc tccagcggtt cttttttata tggctatagg ttatgatttt
     9841 ggaaaacttg gatctttgat tacggctttt tttgtggttt ttggagctat tcgtttggcg
     9901 agatttaatg ttaccacagg cacttatgaa ccttctgttt ttataggtct tcctatacct
     9961 actgcagcag ttgtgagtgc tatatggact tatgcgttta ttagttatga ttttttaaag
    10021 ccttatggtg tagttttttt ggtgcttcaa gcaattttag ggcttttaat ggtaagtaat
    10081 atacgctatc ctagctttaa aaagcttgat tttaatcgtt ctagtgtttt aaaagttttg
    10141 attattttaa ttataatatt ttcattttta tatctttatc ctcttgaaag tttagtaatt
    10201 ttagcaagct tgtatgtgct ttatggaatt attcgggttt tatataccat tattgtttca
    10261 aaatttaaga taagaaatca agagtaaaat ttttcaatga cttcgcattc ttcttgagtg
    10321 aagccagctt tgattcttgc ttgaatgtta agtttttttc ctgcaagaga gaattgttta
    10381 aacgttttac aaagctcgat aaaatcatac ttgttttgat ttgcaaattt ccaccaagta
    10441 tctccttttt taacgtgttt tatttcatca ttaagtataa tttcaagata ttccattaaa
    10501 agatttttaa tgaaatgatt ggagctttga agtttttgaa caacaaaggg gttggcatca
    10561 agccctttag cttctaaacc tctatgaact attcccattc taaagcttaa agagtctttt
    10621 gtagcttcta gagcagattc taaattatca tgcactggaa aatctccata tttgtaacca
    10681 agttcttcaa gtgctgaatt taaaagtttg aaatgtttaa tttcctcatc tgccacctcc
    10741 agccaatcgt aataaaattg caaaggtaga tttttaaagc gataactcgc atctaaagcc
    10801 aggttaattg cattaaattc tatatgagcg actgaatgaa ttattttagc aagcgcatga
    10861 gttgaattga caaatttagg ccttcttata cgtgtaggat gaagcaaggt aatttgttgc
    10921 gatgtatttt ttttgaaaat gctttgatgc tcgtgattaa aaataaattt gtggctttta
    10981 aagtcttcat aaaaattttg aaaagagtga aattt
//
LOCUS       DAZAND010000060        11009 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.060, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000060 DAZAND010000000
VERSION     DAZAND010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11009
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.060"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..856
                     /locus_tag="ACHDOB_001182"
     CDS             <1..856
                     /locus_tag="ACHDOB_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HFN3326105.1"
                     /translation="KSFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFC
                     YDFFGTFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCG
                     FSANGVYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFV
                     HKDIIKALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLIS
                     PMLNALSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYTFFYLSHPSI
                     SDRIKALS"
     gene            853..1668
                     /locus_tag="ACHDOB_001183"
     CDS             853..1668
                     /locus_tag="ACHDOB_001183"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HemK/PrmC family methyltransferase"
                     /protein_id="HFN3326106.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIQI
                     DHEPYFELIKRFKSGEPFEYIFEKVDFWGLEFKIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELGLKITACDINPKALELALENAKLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQDYNRAFIAKFTNMRYDKK"
     gene            1681..2151
                     /locus_tag="ACHDOB_001184"
     CDS             1681..2151
                     /locus_tag="ACHDOB_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HFN3326107.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENATKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            2189..2938
                     /gene="flaC"
                     /locus_tag="ACHDOB_001185"
     CDS             2189..2938
                     /gene="flaC"
                     /locus_tag="ACHDOB_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HFN3326108.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATGGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            2974..3606
                     /locus_tag="ACHDOB_001186"
     CDS             2974..3606
                     /locus_tag="ACHDOB_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HFN3326109.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASTIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKESIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(3619..7221)
                     /gene="dnaE"
                     /locus_tag="ACHDOB_001187"
     CDS             complement(3619..7221)
                     /gene="dnaE"
                     /locus_tag="ACHDOB_001187"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HFN3326110.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGPEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            7404..7646
                     /locus_tag="ACHDOB_001188"
     CDS             7404..7646
                     /locus_tag="ACHDOB_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_255349556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:7434..7436,aa:Sec)
                     /transl_table=11
                     /product="SelT/SelW/SelH family (seleno)protein"
                     /protein_id="HFN3326111.1"
                     /translation="MKVKIAYCNLUNYRPQAARVAEELQSDFKDVEVEFEIGGRGNFI
                     VEVDGKVIFSKTQLINCESERFPYQNEINQLIKNRV"
     gene            complement(7659..7988)
                     /locus_tag="ACHDOB_001189"
     CDS             complement(7659..7988)
                     /locus_tag="ACHDOB_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC/Spx/MgsR family protein"
                     /protein_id="HFN3326112.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(7985..9325)
                     /locus_tag="ACHDOB_001190"
     CDS             complement(7985..9325)
                     /locus_tag="ACHDOB_001190"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II 3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HFN3326113.1"
                     /translation="MWTKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVVK
                     IGRIAGQFAKPRSSDFEELNGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAT
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLRGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            complement(9349..9762)
                     /gene="uraH"
                     /locus_tag="ACHDOB_001191"
     CDS             complement(9349..9762)
                     /gene="uraH"
                     /locus_tag="ACHDOB_001191"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033971 - hydroxyisourate hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006144 - purine nucleobase metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HFN3326114.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
     gene            complement(9895..10251)
                     /gene="rplS"
                     /locus_tag="ACHDOB_001192"
     CDS             complement(9895..10251)
                     /gene="rplS"
                     /locus_tag="ACHDOB_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HFN3326115.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKMGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
     gene            complement(10262..10966)
                     /gene="trmD"
                     /locus_tag="ACHDOB_001193"
     CDS             complement(10262..10966)
                     /gene="trmD"
                     /locus_tag="ACHDOB_001193"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HFN3326116.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
BASE COUNT         3760 a         1902 c         1489 g         3858 t
ORIGIN      
        1 taaaagtttt atcaaagata aagcccatgg tttttcaaat atgactgtaa aactttttat
       61 caaagatact atgaaaagtc ttattttaac tttaatattt ggatttttaa tcctttatgc
      121 tttgcttttt tgctatgatt tttttggaac tttttggtgg attgcggcct ttatttttgc
      181 cttttgtatt atagtgatta taaatctcat ctaccctacc ttgatagcac ctatttttaa
      241 taaaatgaaa aaactagacg atgaaaattt attgaaaaaa atcagctctt taatgaaaca
      301 atgcgggttt agtgcaaatg gggtttatgt tattgatgca agcaaaagag ataagcgttt
      361 aaatgcttat tttggtggac tttttaaaag caaaagagtg gtgctttttg atacattatt
      421 aaaagcctta aatgaaagag aacttttagc tgttttagga catgagcttg gacattttgt
      481 tcataaggat attatcaaag ctttatttaa cggcgctata actatgtttt tacttttttt
      541 tgtttttgca aatttacctg aatttgttta cttagaaagt catctagaag gagtaaatgg
      601 tggcgtgttt gctcttttat ttatcttggc aaatattttt agctttttaa tctctcctat
      661 gcttaatgcc ttaagtagaa aaaatgaatt tgcagctgat caacacggag ctaaagttac
      721 aagcaaagaa gatatgaaaa atgcattgat agctctagca agagaaaata aagcttttat
      781 caaaacaagt aaaatatata cattttttta tctcagccat ccaagtatta gtgatagaat
      841 caaggctctt tcttgactat aaaaaatgct cttatggaag ctaaatctag cttaaaaggt
      901 tatgaaaatg aagcagtatt tatactctgt gaatatctaa aaaaagataa agcttggtta
      961 tttttaaacc aagatataca aatagatcat gaaccttatt ttgagcttat aaagcgtttt
     1021 aaatctggag aaccttttga atatatattt gaaaaagtgg atttttgggg cttagaattt
     1081 aagataaaaa aaggcgttct aatccctcgc tacgatagtg aaattttact ttttcaaatt
     1141 ttaaatttat gcaaaaaaaa tacttttaat gggattttag aaataggatt tggaagcgga
     1201 attttaagca ttgttttagc caaagaactt gggttaaaaa tcacagcctg tgatatcaat
     1261 cccaaagcct tagaattagc tttagagaat gccaaattac acaaagtcga tcacttgatt
     1321 gactttaaac tttgtaattt taagcaaatt aaagaaaatt atgattttat tttttcaaat
     1381 ccaccctata ttaaaaattc atatcctata gatatttggg tgcaaaaaga acccaaagag
     1441 gctttatttg gtggagaaaa aggatatgaa attctagaag aaatcataca tttttccctt
     1501 gataaaaaag ttaaattttt agcttgcgaa tttggctatg atcaaaaaga aattttggaa
     1561 aaaattttat atcaaaataa tttcattgtt gatttcttca aagatgaaca agattataat
     1621 cgtgctttta tagctaaatt tacaaatatg cgctatgata aaaaataaaa ggagaaactc
     1681 ttgaaagctg ttaatttatt tttacttgcc tccatcatag gggttgaact catactagga
     1741 atagttgttg caccaacaat tttttttcct caaaatctta taggagaagg agtgttgagc
     1801 cattttcaaa gtggcttaat gatgacgcaa atttttatta agatgggata tttgctgatt
     1861 tttgtttcag tggttaattt tttatatgaa atttattctc ttataaaaga tgaaatgaaa
     1921 tttcaaataa aattttcaaa atttatgctg agtttgctta ttttgatttt aagcttaata
     1981 tttgtttttt attttactaa taccataatt gaactccaaa acttaggcga aaacgctaca
     2041 aaaactcaag aatttatcag tatccataat gcaagtgaag tggtgattaa aatcatcttg
     2101 ataatgcaag tttttttata tttcttaagc tttaaaatag caaaaaaatg ataaaatata
     2161 aataaatccg aaagagaagg agtaggccat gatgatctct gatgcaacta tgatgcaaca
     2221 aaattattat ttaaacaatg cacaaaaagc tagtgataaa gctttagaaa atattgcagc
     2281 tgttcgcgca ataagtggag ttgatagtgc taatttagct attgctgatt ctttaagatc
     2341 tcaatcaagc actatagatc aaggtgtcgc aaatgcttat gatgctatag gggttttaca
     2401 aattgcagat gctagcctta ccaatatctc tcaaagcgca gatagactta atgaactttc
     2461 agtgaaaatg aacaatgctg cacttaatga ttctcaaaaa ggaatgctaa gaacagaagc
     2521 aacacgcata caagaatcca tcaatgattc ttttaataat gcaacttata atggaaaaaa
     2581 tgtctttcaa actatgaatt ttgtagtagg tagcggaact gaaactacaa atttaaatcc
     2641 attagcaaca ggtggattaa gcatagataa tcaagatagt attacaaatt ttatggatca
     2701 acttggaagt ttaagaagtg aaataggctc gggtatcaat gccatcacat caaatattaa
     2761 cgcaagtgtt caaaatagca tcaactcaaa agcagctgaa aataatttac taaataatga
     2821 tatggcaaaa aatgttaatg attttaatgc caattatcta aaagaaaatg ctgctgcttt
     2881 tgttgctgcg caatccaaca tgcagcttca aagcaaaatt gctaatttat tacaataata
     2941 taagccctaa atagggctta tttctttatc aaaatgactt tagagcaaat tttagaaaaa
     3001 accaaaaacg ttcgtcttgt agccgcaagc aagtatgtcg atgcaagtac aattgaaaag
     3061 ctttttgatc aaggtatagt agaatttgga gaaaatcaag tccaagctct agcacaaaaa
     3121 aaagaaaatc ttgatgaaaa aaaactagac ataaagtggc attttatagg aacgctacaa
     3181 agcaacaaaa tcaatctctt aatcaaacaa aaacctatat tatggcactc ttgtaatggt
     3241 attaaaatag ctaaagctat ggacaaaaga cttgattata aattaaatac tttattagaa
     3301 atcaatagtg caaatgaaaa tagcaaaagc ggtctagatc caaatcaagc tgtagaagaa
     3361 tatttacaaa tacaagaaga atgctctaat ctaaatcttt gtggcgtaat gagcatagga
     3421 tcacacagcc aagataaaga aagtattatc aaaagctttg aaactacatt taaaatttat
     3481 gaaattcttc aaaaacatgg ggctaaaatt tgctctatgg ggatgagtaa tgattttgaa
     3541 attgctataa aatgcggatc caacttagta agacttggaa gcattttatt taaaaatctt
     3601 aagtaagaac aatcttactt aagcatattt attagaaatt tcctctacta tactatcaga
     3661 gataataaaa tctgtatgat aaagcaagca agatcccgcg ctaataactt ttaaaacaag
     3721 ttttttattg tttttttcat taggattatg tgcatttcta gcaatttcat gaatttcata
     3781 gattaattct ctatttaacc ttgtcaaatc tagctctatg atattttttt caaattcctt
     3841 aggttctgcg gtaaaatgat tttcttcttt atttttgaaa tctttttttg ctccaaattt
     3901 ttttatagct ttaatctcgc catcttcaag actttgtaaa tctttaattg cttttaaaaa
     3961 aaagctaggc ttctcccctc cctcagcttt aaatcccaat acaaaaccat aggcattatt
     4021 ttttaaattt tcatctttga tgatattttc tatttcttct acattgcttt caaatacagt
     4081 agcatcaaac gaagaataat aatccaaaat ttcaattcta ccataacgct tattattttt
     4141 actcatcatg gatttgaaat cttcaatttt acctatactt aaaatttctc cattgttttt
     4201 taaactttca aaatctaaac ttttaacata atctatggca ttaatttgtt cataaaatcg
     4261 atctaaagga tggcctgaaa cataaattcc taaaatttct ttttcatatc ctaatttttc
     4321 catcacttca aattcttcat ttttgggagt aaaatttact tgaacacctg aagttaattc
     4381 ctcttcacca aaaagagaac ttgcagcatt ttttcttact tcagccatct tacgcgatgc
     4441 ttcgctaaga ttttccatat tatcaaacaa agcttttctc gtaaaaccaa actcatcaaa
     4501 agcccctgcc ttaataagac tttctaatgt tctgcggttt atcttggtag gatctatctt
     4561 acctaagaaa tcattaatat ccttaaattc tccatcttgt cttgcttcaa gtaaattttc
     4621 aactgcagga atacccacac tttttatagc cccaagtccg tatataatag catccttgcc
     4681 atcttgctct aaagcactaa attcacggat cgctttgtta atcgatggag gtaaaagttt
     4741 aatattcatt tttttcatct catcaatata aacagcaatt ttatccacat tgttttcttc
     4801 gcttgttaaa agcgctgcca taaattcact aggataataa gtttttaaat aagctgtttg
     4861 aaaagtaatc aacgcataag ccgcagagtg agatttatta aaaccatatc ctgcaaattt
     4921 tacgataagc tcccataaat cctcagcttt tgctctatca tatccttgtt tttctgctcc
     4981 atctgcaaaa tcagttttaa gctttttcat cttctcagga tcttttttac ccatagcacg
     5041 acgcactaca tcagcacctc ctaaagaaaa gccacctata atttgaacaa tttgcataac
     5101 ctgttcttga taaacaataa ccccataagt aggctctaaa accttttcta aactgtcaaa
     5161 aggatattct atacttttta aaccatgctt tctgtcgata aaatcatcaa gcattcctga
     5221 ttccatagga cctggacgat aaagcgcaag aaccgcaatg atatcttcaa aacgctctgg
     5281 ttttaagcgt gcatttaaac tttgcatacc gcctgattcg atttgaaaaa ttcccaaagt
     5341 atttccactt tgtatggttt tataaacttt gctatcattt acatctatag tttcccaaat
     5401 aatgtcttta ttgtaacgct ttttaataag cttgatcgca ttattgatta ctgttaaggt
     5461 tttaagacct aaaaagtcaa attttatcaa atccacatct tctaaatgat ctttagaata
     5521 ctgcgttacc aaatgtcttt catcattttt actttgtcta aaaagcggag ttttcttcca
     5581 taaactttca ttagaaatta caacacctgc tgcgtgcata cccgcattgc gatttaatcc
     5641 ttctaaagct cttgcatact cccaaacttc aggaccttta ggatgacgat cgataaattc
     5701 tttaatttta ggttcttttt cataagcagc atcaagagtg attttaagct cttcgggcac
     5761 aagtttagca agctcatcag catcttgaat actcatatca caaactctag ccacatcacg
     5821 aatcacccct ttagccaaaa gtttaccaaa ggtaatcacc tgtgcaactt tatctgctcc
     5881 atatttatca atcacatagt caatcacttc agcacgtctg tcttgacaaa aatccacatc
     5941 aatatcaggc atgctcacac gctcaggatt taaaaaacgc tcaaaaagta gactataagg
     6001 aataggatct aaatccgtaa tccttaaaca ataagaaacc aaacttcctg cagctgatcc
     6061 tcttccaggg cctactggaa tacctttatc tttagccact ttaataaaat catgaacaat
     6121 aagcatataa cctgaaaatt tcatattttt aatgatgtta atttctactt caagtctttg
     6181 tttgtattct tcatgcttgc tttcatcgat aaattttaat ctctcttcaa gtcccttttt
     6241 acaaagttct tcaaaaacta tgtcatcatt atcaaagcta aattcttttg tttcttcagg
     6301 caaggtaata ttatgatctt tagcatattc tcttgtaaat ttaaaattcg gtggagtggg
     6361 attgccaaga ttaagctcta aattacattt ttgcgcgatt tcttgtgtat tttctatagc
     6421 ttctggaata tctgcaaaaa gctcactcat ttgctcaggg cttttaacat aaaattcatg
     6481 cacactatga cgcattctat caggatcatt aagttttttt cccatagcta tacacataaa
     6541 aacctcatgg gcagccgctc tttctttgaa agtataatgc gtatcatttg tagcaataat
     6601 ttttatattt aattctttag aaagtctgat aatatcatca tctatcattc tttgatcgcc
     6661 tataccatga cgcatgattt caaaataaaa atcatcttta aaaacttttt tataccatag
     6721 cgccgcttct tttgctgctt catagccttt tgcaccaaaa cgcacatttc tttcactata
     6781 agtatttaag tgccaattta cttcaccttg caagcaagca gaagaacaaa taagaccttc
     6841 gctatgatct tccaaaagct ttttattgat acgcggataa taatacaaac ctttaatata
     6901 actttgagaa cttaaataca ttaaattttg atatccgatc tcattttttg catacaaaca
     6961 aaggtgaaaa cgctgacgag aacttttatc atctaattca tcgtgattat gcaaatacgc
     7021 ttccatacca atgataggtt ttaaaccttg tgctttcatt gtttgataaa aatcaattgc
     7081 cccaaacata tttccatgat ctgtcatagc cacacttgta gcaccctgct cttttaaagt
     7141 caaagctaat tctttaagct tattggctcc atcaagcaaa gaatattctg tatgtaaatg
     7201 taagtgtgta aattgactca ttttcttcct ttagtttttt aaggcttatt ttaaaattat
     7261 aaatttttct cgctgaattt gaaagaaatt ggtcctaaat ttcaacttaa attttacaaa
     7321 aaggcaaaaa ttcagccaaa ataaactata ataaaatcta agattttaat cttaataaaa
     7381 agaacttttc aaaggatgaa atgatgaaag taaaaattgc ttattgcaat ctttgaaatt
     7441 atcgcccaca agctgcaagg gttgcagaag aactacaaag cgatttcaaa gatgttgaag
     7501 tagaatttga aattggcggc agaggtaatt ttatcgttga agtagacgga aaagttatct
     7561 tctctaaaac acaacttatt aattgcgaaa gtgaaagatt tccatatcaa aatgaaatta
     7621 atcaattaat aaaaaataga gtgtaatcaa acactctatc ataacatttt ctcatattcc
     7681 ttaccaatat atatgttttg ctcatactcg ataataggac gcttaataca acttggattt
     7741 tctaatacaa ttttttcaag ttctttttca tttaaatttt taactttttc tttgtttaaa
     7801 ccaagttttt tagaagttaa tccagcagta ttgataagtt cttcaaaaga tttttgtttt
     7861 aaccatgtgt ataaaatatc ttgattaatc tttttaatat ccataaaatc aaacacaatg
     7921 cctttttgtg ttaaagcatc catagctttt tttacagaat tgcaattttt aataccataa
     7981 agtttcattt tctagccttt tttaccaaat ctgcgattaa aaaagcaagt tctaatgctt
     8041 gatccgcatt aagtcttgga tcgcattgag tctcataacg atcttccaag ctttgagcag
     8101 taacattgct tgcaccacct gtgcattctg ttacatcttt cccagtcatt tcaagatgca
     8161 ccccacctgg ataaactcct tcgcttattg caatctcaaa aaaagatctc acttcttgca
     8221 tgattttatc aaactcacgt gttttaaaat tacctgcttt tactgtattt ccatgcatag
     8281 gatctatgct atatactaaa tttaaacctt cacttttaag tttagagaaa atttttggca
     8341 aattattgat aattttatct gcacccatgc ggataataat atttaatctt ccttcttcat
     8401 tatttggatt taaaacattt gctaaagcta tgatatcatc agcacttgca ctaggtccta
     8461 ttttaacccc taaaggattt tttactcctc ttaaaaaatg tacatgagct tcatcaagtg
     8521 cccttgttct ttcacctatc caaagcatgt gagctgaaca atcgtaaatt tctccactta
     8581 aactatccac tctagttaaa gcttcttcat aaggcaaaag taaagcttca tgtgaagtat
     8641 aaacactaac ttctcttagg cttggagtat tacttgtatt aatcccacaa gcttccataa
     8701 aagctaaagc ttgtgaaatt ttttcactga tatcagtata ttgcttatgg agttcactct
     8761 tttttaaaaa acccaaattc caacgatgta cttcatgcaa atctgctaaa ccacccttag
     8821 caaatccacg taacaaattt agcgttgttg cactttgata ataagcttca agcattctat
     8881 gtggatcagg aatgcgtgct tgttcgctaa attcaaaacc attaataata tcaccacgat
     8941 aactaggaag acttatacca tttaactctt caaaatcact acttcttggc ttagcaaact
     9001 gccctgcaat acgaccaatt tttacaacag gacatccacc ggcaaatgta agcactatag
     9061 ccatttgaag taaaatttta aacatatcac ggatatttac agcgccaaaa ttttcaaagc
     9121 tttcagcaca atctccacct tgaagtaaaa aagcttcttt tttgcaaact cttgctaaag
     9181 acttttgaag atttctcact tctccagcaa aaaccaaagg aggaagcttc tcaagtcttg
     9241 ctaaaactct attcatttcc tcttgatctg gatagatagg ttgctgtttt ataggatagt
     9301 ttttccaaga attcttagtc cacatggttt tttctttcgt tttatttatc agcttcctct
     9361 ataagttgaa taaccaaaag gagaaagggt tattggaaca tgataatgtt tttgatcttt
     9421 agaaagctca aaacttacct ctacaaaagg ataaaaagta tttattttgt gtgatgtgta
     9481 atagtctttt gtgaaaaatt taagcttata aattccaaaa gccctatttt cagctttttc
     9541 atatggtaat aaatctccta ttctaccatt ttcttcggta aattcttcac ttactttttt
     9601 ccactgttga tttgcttcca acttataaag ctcaactttt actttaggag caggttgtcc
     9661 agaagtaata tccaagacat gagtacttaa ttgatattca gtagcactca aaaacattgg
     9721 cacgcttgct agtattaata aagttttttt aatagaaaac attttctctc cttgtataat
     9781 atttacaagg aatattatac aagagtatta ttaataatta aaatcaaata ataaaaatta
     9841 taaattaatt ataattattt aattgttagg cttataataa aaaataatta taaattattt
     9901 tttaagctct ttaatacgcg ctgctttacc gcgtctatct cttaagtaga ataatcttgc
     9961 acggcgcaca cgaccacgac gcaaaacagt aatactttct aaactttcac tataaatagg
    10021 gaaaattctc tcaacgccaa cattattagc gcccatttta cgcacgataa aagtttcact
    10081 tacgccatta cctcttctag caatacaaat accctcaaaa ttttggattc ttgttttatc
    10141 cccttctttg atgcgaattg caagctttaa agtatcacca gcacgaaaat ctggaacatt
    10201 tttaccttca atttgttttg cttcaaattg ttctatatat ttatttttca taaaaaatcc
    10261 cttatttttt gcgttcatgc tctaaaaata aatctggacg aaaaaatttc gttttgcaag
    10321 acgccaaagt agtttttaaa cttgcaattc tagcgtgatt accctttaaa aactctgaag
    10381 gagtataaaa ttttttattt tttttctcaa aaataaaagg ttttgaaaaa gcaggcgctt
    10441 cgagtaaatt attttcaaag ctttcttctt ccaaactttc catatttcct aaaaccccgt
    10501 taacatttct taaaatcgca tcacacatta caagcgcagg taattctcct cctgttaaaa
    10561 taaaatcccc tatgctaaaa acttcattcg caaaaatttc aagcactctt tcatctatac
    10621 cttcatagcg cccgcataca aaaactatat gttctttttt acttaagcgt ttggcgtctt
    10681 tttgattaaa ggttttacca cttggattta aaaaaataaa atagggattt tctttttttt
    10741 cttgaatact tcttagcacc tcatacatag gttcagcttg catcaaaagt ccagctccgc
    10801 cacctatttt ataatcatcg actttatgat aggaattttt agaaaaatct cttggattat
    10861 aaaaattaag tttgaaaagt tttttttctt ttgctcttgc aagtatagaa tcttgaaagt
    10921 aaaattccat aagattaggg aacaaagaaa cgaagctaaa tttcatgaat tttctaaaat
    10981 taaaaaagca tcttgcgtgc aaaaaatct
//
LOCUS       DAZAND010000061        10913 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.061, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000061 DAZAND010000000
VERSION     DAZAND010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10913)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10913)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10913
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.061"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1068
                     /locus_tag="ACHDOB_001194"
     CDS             <1..1068
                     /locus_tag="ACHDOB_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HFN3326117.1"
                     /translation="KLELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQDDD
                     IYFDFDKDEDTYIVVNKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKNDF
                     LDKYKYLEKFGNEEDKKLYAKYDYLYYASEILDYLPEYMGDGVFYLASKMIEKYPEKK
                     IEILKTLADKEKGIFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNAFD
                     NEIKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNPTL
                     SYKIAADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFEFL
                     ALIEGIQAPSLKNHTLKVSLI"
     gene            1065..1448
                     /locus_tag="ACHDOB_001195"
     CDS             1065..1448
                     /locus_tag="ACHDOB_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326118.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIHTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            1441..2124
                     /locus_tag="ACHDOB_001196"
     CDS             1441..2124
                     /locus_tag="ACHDOB_001196"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HFN3326119.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALIAAEA
                     LSNYALKAYAIELDIKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDIREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYSS"
     gene            2183..3229
                     /locus_tag="ACHDOB_001197"
     CDS             2183..3229
                     /locus_tag="ACHDOB_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HFN3326120.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            3229..3570
                     /locus_tag="ACHDOB_001198"
     CDS             3229..3570
                     /locus_tag="ACHDOB_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326121.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            3633..3830
                     /gene="flgM"
                     /locus_tag="ACHDOB_001199"
     CDS             3633..3830
                     /gene="flgM"
                     /locus_tag="ACHDOB_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HFN3326122.1"
                     /translation="MINPIQQSYVANTALNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            3875..4309
                     /locus_tag="ACHDOB_001200"
     CDS             3875..4309
                     /locus_tag="ACHDOB_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HFN3326123.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFNINDGTNNAYGDKKTNPESIFKINV"
     gene            4319..6145
                     /gene="flgK"
                     /locus_tag="ACHDOB_001201"
     CDS             4319..6145
                     /gene="flgK"
                     /locus_tag="ACHDOB_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HFN3326124.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRFP
                     DLQNTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNNDHNANNDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLSGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            6162..6926
                     /locus_tag="ACHDOB_001202"
     CDS             6162..6926
                     /locus_tag="ACHDOB_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HFN3326125.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNESSLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            6930..7694
                     /locus_tag="ACHDOB_001203"
     CDS             6930..7694
                     /locus_tag="ACHDOB_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HFN3326126.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFFTTLGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7687..8868)
                     /locus_tag="ACHDOB_001204"
     CDS             complement(7687..8868)
                     /locus_tag="ACHDOB_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HFN3326127.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYFMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSCDFLFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNF
                     N"
     gene            complement(8865..10424)
                     /locus_tag="ACHDOB_001205"
     CDS             complement(8865..10424)
                     /locus_tag="ACHDOB_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HFN3326128.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLHKLNLGDKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLACAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(10414..>10913)
                     /locus_tag="ACHDOB_001206"
     CDS             complement(10414..>10913)
                     /locus_tag="ACHDOB_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HFN3326129.1"
                     /translation="SVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEK
                     NKISREKLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKK
                     YFDIKAYQKTIFWTLKANELDKQKQDSWLIFAQAKRALGEEKEAQSALDAYINYYGLM
                     ELDGK"
BASE COUNT         4145 a         1688 c         1572 g         3508 t
ORIGIN      
        1 aaattagaat taagaatttt tagatttgat aaaaccaaag attatgaggc ttattataaa
       61 ccttatattt atgataatta tgaaaatttt gcaagttttt atgatctgct tttgcaagtt
      121 caagatgatg atatttattt tgattttgat aaagatgaag atacttacat agttgtaaat
      181 aagcaaatca taccactttt tacaccttta gaaaaaatag caaaagaatt tgattttagt
      241 ctttgtatcg agcctttaag cacaaaaaga gccattaaag atcttatcat cgataaaaat
      301 gattttttag acaaatacaa atatcttgaa aaatttggta atgaagagga taaaaaactt
      361 tatgcaaaat atgattattt atattatgca agtgaaattt tagactatct tcctgaatat
      421 atgggcgatg gagtgtttta tttggcttca aaaatgatag aaaaatatcc tgaaaaaaag
      481 atagaaattt taaaaactct agcagataaa gaaaagggta ttttttatca tcttgaaagc
      541 aaaaatgaaa ttttagaaac aacgatcaaa aacctacaaa atgaaatttt aaatttaggg
      601 ctttttgata aaaatatttt acactttgat ttacctaaaa ccaatgcttt tgataatgag
      661 atcaaagaac ttaaagaaat taaacataat tttaaagatt ttaatatagc tttttatggt
      721 tttaatgctt gcgatacttt aaaatccaaa cttaaggcta aatttatttc ctatgaaaac
      781 agtataaaaa ataatggctt tagcttgctt aatctaaatc ctacgctaag ctataaaata
      841 gccgcagata ttgttttgga cgcttatgat agcggggctg attttatggt agtaaaagaa
      901 gaaaaagatt tttatctttt tgatacttgt gctaaaaaac ttatgcaaac aagtggaagg
      961 gaatttgaag acttttatat tttgagccgt tttgagtttt tagcccttat cgaaggcata
     1021 caagctccat cattaaaaaa tcacacttta aaggttagtt tgatatgaaa atctctttag
     1081 aatgcaaaga tctcatcata gaaaaaactt tagaactttt tttaaaagat catttggtaa
     1141 tgaaaaaaaa ttgtgatttc atcattagcg atgaaaaaat tcataccgca aaacccttat
     1201 ttatcatctc taaaaactct ccatttttaa gcataccatt tagcaaagaa gccttgtttg
     1261 agtctttaaa tgaatttgat aatgccttaa aagcagcagc tttgcaactt gcacttgaac
     1321 aaaaacgact gcttgaagaa aaaattgacg ctattgcttt ggaatttaaa aaagattatg
     1381 aaaataaaat cgatcttgcc ataaaagatc ttaaaaacaa actcgtaaaa gcacttaatg
     1441 atgaatgatg aatttataag cgttaaagac ttttttaatc acaatgaaaa aagaaaaaaa
     1501 tttcttcaaa aacaagaaat taaacctcct aaagaaaaaa caaaaaaaac taaagaaaca
     1561 aagctttata caaatataga aagtggtaaa tacaaaggga aaaaactact tttacctagt
     1621 cttacaacaa caagaagtac taaaagcata gtcaaaagtt gtgtttttaa tgtaataaga
     1681 gaagatttaa gaagtaaaat tttcattgaa gcctttggcg gaagtgcttt aatagcggct
     1741 gaagcactaa gtaattatgc tttaaaagct tatgctatag aacttgatat aaaagcttat
     1801 aaaattgctt tagaaaatgc taaaaatata gatccaaatt tagaagtgat ccatgcaaat
     1861 acttttgaaa ttttacctaa actcatagaa aattcaaaaa atgaaatcat cttatatctt
     1921 gacccacctt ttgatatcag agaaggtttt agtgatattt atgaaaaaat ttatcatttt
     1981 ttagaaaatt tagatttaaa gactttaaat ttaatcattt ttgaacacca ctcaaccata
     2041 aaaactcccg aaaaaatcca aaattttcaa aaagtcaaag aaaagaaatt tggatcaact
     2101 agcttaagtt tttactcttc ttaactcact tggaacactt tttgcttgat ctatcatcaa
     2161 caatagatta aaggaagaat ccatgagagt tttaacgata tttttactct ttatgacaag
     2221 catttttgca gtgcaaatca aggatgtagc aaatactgta ggtgtaagag ataaccaact
     2281 tataggttat ggacttgttg tagggcttaa tggaagcggc gatggaacaa gctctaaatt
     2341 tacactacaa tctatctcaa accttttgca aggtatgaat atcaaagtag atcctaatga
     2401 tatcaaatca aaaaataccg cagctgttat ggttacagcc aaacttccag cctttgcaaa
     2461 aagcggagat aaacttgata ttaccgtttc atctatgggt gatgcaaaat ctttacaagg
     2521 tggaacactt ttactaactg cacttcgtgg gattgatggt gaaatttatg ctatagcaca
     2581 aggctctatc tcaacaggag gtttaacacc tagaccagga ggagcaggtt ctcactcaac
     2641 tgctgcaact gtaatgggcg gagctaatgt agaaagagaa attccacaaa attttagcca
     2701 aaacaatgat ctaaccttaa gtttaaaagt agcggatttt aaaaccgcaa acgatataga
     2761 aagagtttta aatactgtct ttggcgaaga agtagctaaa gccatcgact ctcgcacagt
     2821 aaaactcaaa aaacccgaag atctttcaaa tgttgatttt atggcaagag ttttagaaca
     2881 agatatagct tataaaccac aaagcaaagt tatcatcgat gaaagaacag gaacagtgat
     2941 tgctggagtt gatgtagagg tagaacctgt tttaatcact cataaagata tcactataaa
     3001 aatagatcca aacaataacg cagtagctaa tcaaaatgaa atcgatatga aagatggtgg
     3061 ttttgtagat ccaagttcaa ataccttaag aatcaacaat gccaaaagca cagttgcaaa
     3121 tatagctaga atgcttaaca aacttggagc aaccccaaat gacattatcg ctattatgga
     3181 aaatttaaag cgcgcaggtg caattaacgc ggatttggag atcatctaat gaaagtggat
     3241 aattttttaa atacttatag tatgaatagc gctttacttg atcgtgcagc caaagcaaga
     3301 agtttagaat caagcatcaa aataaatgac aatgatatag ttacaaagag caaagaagat
     3361 gaagccttaa aagaacaaac ggatgctttt gaggcatttt ttttaaagca agttttagat
     3421 gtatctttaa aaagtcaaaa ttcactcttt ggaaaagatg ccagcgatga aatatactct
     3481 tccatgtata atgataccat gagtaaagct ttaagtggag gtatgggttt ttcaaaatta
     3541 ttatacgatt ttttaaaaga aaggggttaa gttttttaaa tttaggtcga tatggtttgt
     3601 agaggattat aactaagatc aaggaggcag aaatgatcaa tcctatacaa caaagttatg
     3661 tggcaaatac cgcattaaat acaaatagaa tagataaaga aactaaaaca aacgatactc
     3721 aaaaaacgga aaatgataaa gcgagtaaaa tcgcagagca gattaaaaac ggtacttata
     3781 aaatcgatac aaaagctacg gctgctgcga ttgctgactc tttaatctaa aaactttcat
     3841 tctccttttt ttgagagaga gaaaaggaga aaatatgctt aaacaaagac ttgatgaagt
     3901 aaatgctatc ttagcaaaac ttattgcttt aaccgaagaa gatatagaaa atatcaaagt
     3961 ggctaaacat gagagtgtaa cgccaagtgt agaagaaaaa aacaaactta tcgcggaatt
     4021 tattacagct aaaaaacaac ttgatgttgc cttagttgag ctaaataata gctctacaaa
     4081 agggcttagt gaactcttag atgatgaaga taaacaaaaa ctagatctac ttaaaaaaaa
     4141 tcttcaaaac cttcatagta aaaacaaaga gtatgctaaa tttgttctta ttgtcaaaga
     4201 ttttcttgat ggcttagtaa ataaaatgtt taatatcaat gatggaacaa ataatgctta
     4261 tggagataaa aagacaaatc cagagtcaat tttcaagatc aatgtataag gatttataat
     4321 gggtattttt ggaacattat acacaggtgt tacaggctta aaggcaagcg aagttcaaat
     4381 cgcaacaact ggaaataata tctcaaatgc taatgcaact ttttatacac gccaaagagt
     4441 ggtgcaaact acaaatggat atattacaac aggtggagtt caagtaggta caggaactgc
     4501 tgtagaaagt atagtgcgtt tgcatgatga gtattcttac tataaattaa aaggtgcatc
     4561 tactcaacta gaatatacta aatatatggc ttccacttta caagaaattg cgcagcgttt
     4621 tcccgactta caaaatactg gaattttgca agatttagaa aattataaca aagcttggaa
     4681 tgattttgca tctaacccca acgaaaatgc cacaaaaata gcccttgtaa aagcttctca
     4741 gaccttaaca gaaagcgtta ataacacttt tgcaacctta gataaaatcc aaaaaaaagt
     4801 aaatgatgat attaaaaata cagttgatga gattaataga attggcgaag aaattgctac
     4861 tataaataaa caaatttatg gacaagaagc cttaccaaca gaacacgcaa atgaacttag
     4921 ggatagaaga gatgaacttg agcttactct ttcaaagcta gttagtgcag ttgcaagcaa
     4981 aaatgaaatc aatcaagaca atcgccttga tacaaccatc actgatccag gacatcaata
     5041 caatctaagt atagaaggtt ttagtatagt agatggaata aattttcatc ctttaaagct
     5101 tgattatgat gataaaaata aatcttatag catttattat gaaactcctg atgaaaaagt
     5161 tcgcgatctt actgcaaaaa ttagcggtgg acagcttggt gctcaacttg acttacgcgg
     5221 tagaaactat agcaaaagcg aaggaaaata tgaagatgga attatccaag gttatatgga
     5281 ttctttagat acttttgcta agaccatgat caatgaaact aacaatcttt atgcaagttc
     5341 tgcgaaaagt tctgttactt ctgattatct atctgggctt aagggagata ttcctttagt
     5401 taattacgat agaaccatac aaccaggaag ttttgatata gtcatttatg atgataaagg
     5461 cgataaaaaa ctcaccaaaa ccatcaccat agatgtaaat acaaccatga atgatatcat
     5521 gcgtcaaatc aatgctaaca cagatgataa taacgaccat aatgcaaata atgatgttga
     5581 tgatcatatc aatgcaagtt ttagctacga tgcaaaaact ggagatggtt tatttcaaat
     5641 caatgcaaaa tcaggtttta aggtagccat tgaagataag ggcacaaatt tcgcaggtgc
     5701 gtttagcata ggtggttttt tcagcggaac tgatgcaagt aatatgaaag taaaagattc
     5761 catcttaaat gatccaagca cagtaagagc aagtttaagt ggggttgata gtggaaatga
     5821 catggcaaat aaaatcatcc aacttcaata tgaaaaagtt aatttttata atgaagatgg
     5881 cactatcgat aatcttacca tggaagaata ttaccgcaaa cttacaggta aaatagcctc
     5941 agatggtgaa aataacaatg tcgtcaattc aagcaatgaa actctttata attctgttta
     6001 tagcgagtac caatctaaaa gtggcgtaaa tacaaatgaa gaattagccg cccttataca
     6061 atatcaatca agttacggtg cagcagcaaa aatcgtctct accgtagatc aaatgcttga
     6121 taccttacta gggcttaaat cttaagctct agtaatatca aatgaaaaat tttatccatc
     6181 ttaaagctaa gcttgatttt ttagccaatc aaaaaaatac caatcattcc ctttttgaaa
     6241 ctccagatcc tttgcaaatt gctaaaattc acaatgatga atttattgcc ttaatttgtg
     6301 ctttatttgc ctatggaaat gctaaaaata tagtaaattt tctaaagaaa cttgattttt
     6361 ctttattaaa ccttcaagaa aaacaaataa aaaaagaact taaaaattta aaataccgct
     6421 tccaaaatga aaaagatata caagaaattt ttatcactct ttcaaggctg aaaaatgaaa
     6481 gttcactcta cgaacttttt tatcaagcct atcaagaaag agaaaatacc acagatgcca
     6541 tcttagcttt tatgcaaaaa atcaaaacct taaattcata ttcaagttat ggatatgatt
     6601 ttttctttgg aaaaatttgg caaaacaccc ctacttcacc tcttaaacgc tataatatgt
     6661 atctaagatg gatggttaga aaagatgaac ttgatcttgg actttttacc aaaattcaca
     6721 ccaaagatct tttaatccca cttgatacac atgcacataa aatttccttg actttaggac
     6781 ttctaaagcg taaaatatat gattataaaa gtgttttaga actcacacaa aatttaaaaa
     6841 aattagatgc aaatgatccc ataaaatatg actttgcact ctatcgttta gggcaaagta
     6901 aggaaattga caaatttaag gagtgaagaa tgggttttga gcacttaaat acaatttatt
     6961 atttcatact tttttttgta gctctttttg ctggttttat agattctatt gtaggtggag
     7021 gagggcttat tactctacca gcactcatag cctgtggaat tcctgcgcat ttatccttag
     7081 caacaaacaa actccaaagc gtctttggtt cttttacagc tactttaact tattttaaat
     7141 ccaccactct acctcatctt gcttggggtg tttttttcac aaccttagga gcagctatag
     7201 gaagttatag tgttcttttt gtaaaagatg agcaattaaa gcttattatc ttaatctttt
     7261 taactcttac cttcttatat acagccttac gtcccaactt aggcaaacac gaaagcgaac
     7321 ctaaaataaa aaatatcaaa atttttcatt taatttgtgg cttaacttta ggattttatg
     7381 atggattttt agggcctgga acgggttcat tttggatttt tgcttgtgtg atgctactag
     7441 gttttaatat gagaaaagcg agcattaata ctaaaatttt aaatttcaca agcaacatca
     7501 ttgctcttgc tatattttta tggcaatatg aacttttatg ggctgtaggt ttgcttatgg
     7561 gtgtaggaca agttttagga gcttatttag gctcaaaact tgtattaaaa actaatggaa
     7621 agtttataaa aactttattt ttaatcgttg taggagctac tattattaaa gtagcttggg
     7681 attattttag ttaaaattga cccctgagct aagctcccac ataggtaaaa atatacctaa
     7741 agccaaaaac aaaactaaaa gcgctacaaa taaagtcatc ataggctcta aaaaaatcaa
     7801 aaatctatcc atcaaatttt cgcttttttg ttgataatat ttggcaattt cttcacttaa
     7861 tacttcaagt ctcccacttt tcatcgcaac actaagcata gaaaacacca aagaatcaaa
     7921 aatatcaatc tttttaaaag cctgacttaa ctcaagacca gaatctataa aactaaaaag
     7981 ttttttatac tgaaaaatta aaaatttatt ttcaagccct ataatagcta aatcaaaagc
     8041 tttagatatt gaaattccat tttttaaaag caaagaaaaa accataaaaa aataataatt
     8101 ttgattataa ataatcaaac gagaaatcaa aggtactttt aaaaataaaa aatcgcaaga
     8161 aaaagcaaaa gaatgaaaat ttttataagc taaaataagc ataacaataa aaataacaaa
     8221 caaaaatatg caaaaaattc catagtcatc taaaaaatta taaatttcta acattacatg
     8281 cgtgataaaa ggcaaactcg cgcctaaatt ttcaaataaa tctttaaaat taggcactac
     8341 aaaaagcatt aaaaacaaaa atgctccgat aatacttaaa aaaaccaaag taggatatct
     8401 aaaagccttt tttaattgtt tttgactctc taagcttttt tctcgaagtt tagaaatttg
     8461 actaaacact tcactgattt ttcctgtctt ttcagccgtt ttaatcaaag ctaactccgc
     8521 acgatttaat ccaaaattag cattttcaaa agcttgattt agattttgag ctaaaattaa
     8581 attgtctaat atttttttca taatcttgca agaatgcata aaatataatt ctctaatcgc
     8641 ttcttgaaca cttaatccaa cttcacacaa caaagctagc tctttaaaaa agagtataaa
     8701 attttcatcc tttaatctct gaaaattaga tttttgaatt tcttttatat caatgatttt
     8761 ccaattcttt gataaggctt ttgcttgtgc tgtatttaaa ttttcagctt ttatagtttt
     8821 tgtataattt tgattgtttt taagaaattc tacttcataa aatttcatct tacaaccctt
     8881 aaaagctcat ctatacttgt aagaccttct ttggcttttt ttaaaccttg ttcaaacata
     8941 gtttgaaagc catatttttt tgcaagctcc attaaaatcg ttttatcttg attttcccta
     9001 attgcacaag ctaaatcttc attgatctct aagcattcag cgattaattc tctgccaaaa
     9061 aatccactat gatgacaacg ctcacatcct tttggttcaa aaaattcacc ttcaaattca
     9121 atataatgtt ttttgctttt ttgcttacac caaggacaaa gttttctaac caaacgctgt
     9181 gctataacaa gactcaaagc cgatgctatc aagtaacttt ttgcttgcat atccaaaagc
     9241 ctatcaatgg tactaagagc atcattagta tgcaaggtgc ttaaaagcaa atgacctgtt
     9301 aaagaagctt taagtgcaat atctaaactt tcttcatcgc gaatttctcc tatcatgata
     9361 atatcaggat cttgccttaa aattgctctt aaaacactat taaactcgac tccaactttt
     9421 gaattaagca aaatttgctg cactaaagga attttatatt ctataggatc ttctgcggag
     9481 ataatctttt tttcaatact tttcaattca tttaaacacg cgtataaagt tgtgctttta
     9541 ccactacctg taggaccggt taataaaatc attccattgg gacgatgtaa aatctttttt
     9601 aaaatttcta aatttttatc tccaagattt agtttatgca aatccaaaat ttctttatca
     9661 tgttttaaaa ttcttataac aacactttcg ccataaatca aaggcaaaca tgaaacacga
     9721 aaatcatatc tttcattttc aaaatctaat tcaaaacttc catcttgcgt ttttcttgat
     9781 tcagctaaat tcaaacaagc taaaaatttg acatgaaaaa ccaaagcttc ataaatatcc
     9841 ttctcaaaaa tagcaaattc acgcaaaatt ccatcaaccc taaacctaat caaagcatca
     9901 tcattccttg cttctatatg aatatcactc gcatgaaaag ataaaatttc atgtaataaa
     9961 aaatcaaaaa tttgactgat gcaactttga tcatctcttt tgtgattttc ttgccattca
    10021 agtctaagct taatgcttaa tcttttaatc tcctcttgaa tgcgaatttg atttaaaatt
    10081 ttagctatct ttaattcatc ggcaattgca gtgtcgattt tttcacaaat cataaaagtc
    10141 ttaacttgct ctaaaagctc taaagaacaa ggtttggatc taataatcat aaagccgtca
    10201 ttgtttttaa taagcagaaa tttaaatttt aaaagtaaag aaaaaggtat accttcataa
    10261 ataaaatcat tatcttcatc taaatcaaca aaatgtaaat tacaaaaatt tgctaatttt
    10321 ttaaaaaaat cccaagaagt gatattaaat ttagtgcaaa tttcatcaag acttatttca
    10381 ttatcaatat aagcttgaaa aattttatcc attctacttt ccatctaatt ccattaaacc
    10441 ataataattt atataagcat ctaaagcact ttgagcttct ttttcttcac ctaaagctct
    10501 tttagcctga gcaaaaatca gccaagaatc ttgtttttgc ttgtcaagtt cattggcttt
    10561 taaagtccaa aatattgtct tttgataagc tttaatatca aaatacttct tagctaaatt
    10621 taaagccttt tcatagcttg gattttgata aaaagatttt tttaaatcag aaatatttaa
    10681 aattttagaa tcaatttcta tcttactaat gtgtgtattt tcctgcaccg ctttaacttc
    10741 ttctagttct ttatataact tttccctaga aatcttattt ttttcttgta aaatttgcgc
    10801 ttgaagaatc ttttgctcta aatgcttttt atgttcaata gcttgcaaat aaatattttt
    10861 ttgcttatta tatttttgca ttagcacaaa aaaacaaaat gctataactg ata
//
LOCUS       DAZAND010000062        10773 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.062, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000062 DAZAND010000000
VERSION     DAZAND010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10773
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.062"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            130..1161
                     /gene="pseI"
                     /locus_tag="ACHDOB_001207"
     CDS             130..1161
                     /gene="pseI"
                     /locus_tag="ACHDOB_001207"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HFN3326130.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALQSIKAAKKAGADAI
                     KIQTYTPDSLTLNSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDLEFLKRFDPIAYKIASFEANDENFIRLIAKEKKPTIVSTGIATEEELF
                     RICEIFKEEKNSNLIFLKCTSAYPAAIEDMNLKGIVSLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMIDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKEIKKGEIFSEENVKSVRPSFGLHPKFYQEILGKKATKDIKFG
                     DALKQGDFE"
     gene            1158..2129
                     /gene="legB"
                     /locus_tag="ACHDOB_001208"
     CDS             1158..2129
                     /gene="legB"
                     /locus_tag="ACHDOB_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HFN3326131.1"
                     /translation="MKNILVTGADGFIGSHLCESLVKKGFKVRALSQYNSFNFWGHLE
                     KSPFLKDMEVISGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGT
                     LNMLEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLDLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDASKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            2122..3285
                     /gene="legC"
                     /locus_tag="ACHDOB_001209"
     CDS             2122..3285
                     /gene="legC"
                     /locus_tag="ACHDOB_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HFN3326132.1"
                     /translation="MFEKEISFIKSLFNKENIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AITYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTHKPIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKISHPYEYDHDRVAYNYRLCNINAAILLAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFVDEKSNEKSNFWLNTLLFKDENLRNIFLEECLK
                     NNIFVRPVWKSLPSLKAFQNCQSDELINTKNLEKHLVNLPSSVRITNKNLGLS"
     gene            3282..3992
                     /locus_tag="ACHDOB_001210"
     CDS             3282..3992
                     /locus_tag="ACHDOB_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFN3326133.1"
                     /translation="MKKYISNIEISTNQGTNAQIWENIFSQKEWGKYPSENLIRFIAK
                     NFYNVKDRSKINILELGLGTGANLWFCAKEGFSVSGIEWSKTGVERFKQRLENENLSH
                     HIQEIKIGDYEQKLDEFKDESFDAIIDNCSLCCNNFTKTKKIFNKAIMKLKINGKFFS
                     STISKGIEGYDNTNDDFQLPKSGIYTHIGMIRYSNKKDLKKLYKNKYFKWIKLQTQSL
                     EADNKLIDKLFIIEGERI"
     gene            4055..5014
                     /locus_tag="ACHDOB_001211"
     CDS             4055..5014
                     /locus_tag="ACHDOB_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326134.1"
                     /translation="MSRISLENYLQVHNRYSCLSNDIYLNKKYAELYGETFDFSYSKN
                     GFVFKVVAIKEKIENSQFYDLQSPYGYGGIYCNSQNEDFIKEALKALKTEAFKQNIIA
                     FFIRFHFFDENLKIYSKLLPFFTKSRETIIVNTEKGIDNIRMNYSPRIRSYVKKAREK
                     LQIKFATKKDYKDFFTLYSKTMQRNQADKFYYFNEDYFQKLFDFNESKILKASLNNEI
                     LAYVSFFLCGDFSYYHLSANVLKSNANAALLDFFFEYASNNNSKFCFLGGGIQDNDTL
                     YKFKEKFSTINGSFYIGGIVFNQKEYNQICKNFSNNKFLKYRY"
     gene            5061..6065
                     /gene="legI"
                     /locus_tag="ACHDOB_001212"
     CDS             5061..6065
                     /gene="legI"
                     /locus_tag="ACHDOB_001212"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HFN3326135.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTASDESQLQMVQKLELDLKAHKELILHAKKCNIAFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEEALNVLCK
                     NGAKRQNITLLHCTTEYPAPFDEVNLKAMQSLKDAFKLDVGYSDHTQGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPHELKTLCIQIRQIQKAMGDGIKKASKSERKNI
                     NIVRKSLVAKKDIQKGEIFNEENLTTKRPANGISAMRYEEFLGKIATKNYKEDELIRE
                     "
     gene            6058..7212
                     /gene="legG"
                     /locus_tag="ACHDOB_001213"
     CDS             6058..7212
                     /gene="legG"
                     /locus_tag="ACHDOB_001213"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HFN3326136.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLNLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLNPDTVVIL
                     GDRYEMLSIASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGNRQKGRLRTQNIIDCEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNDKNPNKFIKTCLKNVNLDTILHKNFIDL"
     gene            7221..8246
                     /locus_tag="ACHDOB_001214"
     CDS             7221..8246
                     /locus_tag="ACHDOB_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HFN3326137.1"
                     /translation="MDIDKLKLTPDSSIKDALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALINGKTLKDSIKGIYTKNPITIKENTSKEQLLKLSSKTDIYDFPVLDEKGQI
                     LSIKSISSLLKANPNSIIIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIVQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELDFNDLLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLVLQKGKVNTYIINDYWIDIGKPDEFL
                     KANEDFK"
     gene            8243..9148
                     /gene="ptmF"
                     /locus_tag="ACHDOB_001215"
     CDS             8243..9148
                     /gene="ptmF"
                     /locus_tag="ACHDOB_001215"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HFN3326138.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLKYEVSLLSLSAKKEEFKNTPIY
                     RSLKECDLNEFDLFIIANITTEHFNTLKALDELVKDKIILVEKPLFEKSQNFTSSKNH
                     IYVAYLLRFNPVIVALKRLLKGEKIYFASLVCNSYLPHWRAIDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFKDLELIYSQNAKISELDITSDDFAFLALKNSQEAKIHIELDYF
                     SKFNKREIIIHTLEKSFKADLINNKIEIYHKDQSQKILNFENDTIKTLQNLHQAVFEQ
                     NKELCDLKQALKVLEICDKVRKKNG"
     gene            9141..9848
                     /gene="legF"
                     /locus_tag="ACHDOB_001216"
                     /gene_synonym="ptmB"
     CDS             9141..9848
                     /gene="legF"
                     /locus_tag="ACHDOB_001216"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HFN3326139.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINELEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYDAEVFFKREAHLANDRAAKLPVMRDALLRSEEHFKTCFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDIDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            9848..10618
                     /gene="ptmA"
                     /locus_tag="ACHDOB_001217"
     CDS             9848..10618
                     /gene="ptmA"
                     /locus_tag="ACHDOB_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HFN3326140.1"
                     /translation="MLENKIIFVAGACGRIGKALCQKILLSKGIPILADINKERLNKL
                     QENLETNFKTKLLSLELDITKQESLQTALQKSQERYGKIDAFVNSSYPFGKDWGRTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDVCGTLVFLLSDESRFITGQTLVVDDGWGL"
     gene            10618..>10773
                     /locus_tag="ACHDOB_001218"
     CDS             10618..>10773
                     /locus_tag="ACHDOB_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326141.1"
                     /translation="MTFTPTQKELFNKNIEALSNILLKESLKEIKSSKFELILGKDNL
                     DINLKDTS"
BASE COUNT         4174 a         1589 c         1763 g         3247 t
ORIGIN      
        1 ttttgaatga aaccaagcaa aatcataaca aagttgtaat atttatataa tataaatata
       61 taaattgaag aaatatataa tataattata tatcatttta gtcaggaaat ttaccaaaga
      121 aagaaaagta tgcaaatagg aaattttaac acagataaaa aagtttttat catagcagaa
      181 cttagcgcca atcacgcagg aagtcttgaa atggcacttc aaagcataaa agctgctaaa
      241 aaggcaggtg ctgatgcgat aaaaatccaa acttacactc cagatagtct cacgctaaat
      301 agcgacaaag aagatttcat catcaaagga ggactttggg acaaaagaaa actttatgag
      361 ctttatgaaa gtgcaaaaac cccttatgaa tggcattctc aaatctttga aaccgcacaa
      421 aatgaaggca tactttgttt ttcaagtcct tttgccaaag aagatttaga atttctaaaa
      481 cgctttgatc ctatagccta taaaatcgct tcctttgaag ctaatgatga aaatttcata
      541 cgtttaatcg ccaaagaaaa aaaacccact atcgtttcaa cgggcattgc tacagaagaa
      601 gagcttttta gaatctgtga aatttttaaa gaagaaaaaa attctaatct catcttttta
      661 aaatgcactt cagcttatcc tgctgccata gaggatatga atttaaaagg catagtaagt
      721 ttaaaagaaa aatttaatgt tgaagtggga ctaagcgatc acagctttgg ttttttagcc
      781 cctgttatgg cagtagcact tggagctaga gtgatagaaa agcactttat gttagataaa
      841 agtatagaaa gtgaagacag taaatttagc cttgattttg atgaatttaa agctatgata
      901 gatgcagtta gacaggctga aagtgcttta ggtgatggta agttagatct agatgaaaag
      961 gcacttaaaa accgtgtttt tgcaagaagt ttatacgcaa gcaaagaaat taaaaaaggt
     1021 gaaattttca gcgaagaaaa tgtaaaatcc gtgcgtcctt cttttggact acatcctaaa
     1081 ttttatcaag aaattctagg aaaaaaagct actaaagata taaaatttgg cgatgcttta
     1141 aaacaaggag attttgaatg aaaaatatct tagttacagg tgctgatggt tttataggtt
     1201 ctcatctttg cgaaagttta gtcaaaaaag gttttaaagt cagagcttta agtcagtata
     1261 attcttttaa tttttgggga catttagaaa aaagtccttt tttaaaagac atggaagtta
     1321 taagtggaga tttaagagac agtttttttt gcgaaaaaat caccaaaaac atagatgcga
     1381 tctttcatct tggtgcctta atcgccatcc cctactccta cacagcccca caaagttatg
     1441 tggataccaa tgtcaatggc actttaaata tgctcgaagc agctaaaaaa aacgaaattt
     1501 cgcattttat ccacacctca acaagcgaag tttatggcac ggccttttat gtgcctatcg
     1561 atgaaaaaca ccctttgcaa cctcaaagcc cttattctgc aagcaaaatc gctgcagata
     1621 tgatggcgct gagttattat aattctttta atttaaatgt caatatcgca cgccctttta
     1681 acacctatgg gccaagacaa agcgcaagag ccatcatacc taccatcatc acgcaaattt
     1741 taagcggagc aaaggaaatc aaactaggag atttaagccc taaaagggat ttaaattttg
     1801 tgctagatac ttgcgagggt tttatctctc ttttaaattt aaaacatttt ggagaagttt
     1861 ataatatagg ctcaggagtg gaatactcca tgcaagaagt acttgatctc atacaaaaaa
     1921 ttttagattc taaggtaaaa atcatccaag atgaacaaag attgcgtcct aaaaatagcg
     1981 aagtttttag actttgttgc gatgcaagca agcttaaaaa agctacaaat tggcaaagca
     2041 aaataagctt agaagaaggt ttaagacaaa gcatagagta ttttaaagaa aatttagaaa
     2101 attataaaag tgagctttat aatgtttgaa aaagaaattt cttttataaa aagtcttttt
     2161 aataaagaaa atatcgccct acatgagcct tgttttatag gcaatgagaa aaaatatctc
     2221 ttggaatgta ttgatagcgg ctttgtctca agcgtaggag aatttgtaac gcgttttgaa
     2281 gaagctttaa aagaaaaaac caaagcacgc tttgtcatcg ctacaaatac aggtacagca
     2341 gcccttcata tcgctttact agctaatggc atcgatgaaa actgcgaagt catcactcaa
     2401 agcataagct ttgtcgccac ggccaatgct atcacttata caggtgcaaa gcccgttttt
     2461 ttagatatag atgaaaacac tctgagttta agtcctaagg ctttagagca ttttttagaa
     2521 aatcaaactt atcaaaaaga taatcttagc tataacaaaa ctacacacaa acccatcaaa
     2581 gcttgtgtta tcatgcatac ctttggttta agtgctcata taaaagccat caaagagctt
     2641 tgtgaaaaat atcacatcct tttaattgaa gatgctgcag aagccttagg aagcacttat
     2701 gaaaataagg ccttaggtac ttttggaaag tgtggaattt taagttttaa tggcaataaa
     2761 attatcacag gcggatgcgg tggagcgata ttaagcgatg atgaaaattt agccaagctt
     2821 gcaagacacc ttagtactac agccaaaatc tctcatcctt acgaatacga tcatgatagg
     2881 gtagcttata attaccgtct ttgcaatata aacgcagcga tcttgcttgc aggacttgaa
     2941 aatttggaac tttttttaga aaataaaaga gaacttgcta aaatttacaa ggattttttt
     3001 aaaaatcacg ataaatgcaa atttgttgac gaaaaaagca atgaaaaaag caatttttgg
     3061 ctcaatacct tgctttttaa ggatgagaat ttaagaaata tctttttaga agaatgcttg
     3121 aaaaataata ttttcgtccg tcctgtatgg aaaagcttac cgagtttaaa agcttttcaa
     3181 aactgtcaaa gcgatgagct tataaacact aaaaatttag aaaaacactt ggttaattta
     3241 cctagtagcg ttagaataac aaataaaaac ttaggactat catgaaaaaa tatatatcca
     3301 atatagaaat ttcaacaaat caaggtacaa atgcccaaat ttgggaaaat attttttctc
     3361 aaaaagaatg ggggaaatac cctagcgaaa atttaatccg ttttattgca aagaattttt
     3421 acaatgttaa agatagaagt aaaataaata tactagaatt aggacttggc acaggtgcta
     3481 atctttggtt ttgcgctaaa gaaggtttca gtgttagcgg catagaatgg agtaaaacag
     3541 gagtagaaag atttaagcaa cgtctagaaa atgaaaattt aagtcaccat atacaagaaa
     3601 ttaaaattgg agattatgaa caaaaacttg atgaatttaa agatgaaagt tttgatgcta
     3661 ttattgataa ttgttcactc tgttgtaata attttacaaa aacaaagaaa attttcaata
     3721 aagccatcat gaaattaaaa ataaatggaa aattcttttc tagcacaata tctaaaggta
     3781 ttgaaggata tgacaatacg aatgatgatt ttcaacttcc aaagagtggt atttatactc
     3841 atataggaat gattagatat tcaaacaaaa aagatcttaa aaagttatac aaaaataaat
     3901 attttaaatg gataaaacta caaacacaaa gccttgaagc tgacaacaaa ttaattgaca
     3961 aattatttat catagaagga gaaaggattt aattaatgaa atattttatg gctggggggg
     4021 ggagtatatc aataactcct ataaggagtg gaagatgagt agaatttctt tagaaaatta
     4081 tttgcaagtt cacaatcgtt attcttgctt atcaaatgat atttatctta ataaaaaata
     4141 tgctgaactt tatggagaaa catttgattt ctcgtatagt aaaaatggat ttgtatttaa
     4201 ggttgtagcc ataaaggaaa aaatagagaa ttctcaattt tatgatttgc aaagtcctta
     4261 tggatatggt ggaatatatt gcaattctca aaatgaagac ttcatcaaag aagctttaaa
     4321 agctttaaaa acagaagctt ttaaacaaaa catcattgct ttttttatcc gatttcattt
     4381 ttttgatgaa aatctaaaaa tatattcaaa acttttacct ttttttacta aaagtagaga
     4441 aaccatcatt gtaaacacag aaaaaggtat tgataatatt cgtatgaatt atagccctag
     4501 aataagatct tatgtcaaaa aagctagaga aaaattgcaa ataaaatttg ctacaaaaaa
     4561 agattataaa gattttttta cattatatag taaaactatg caaagaaacc aagcggataa
     4621 attttattat tttaacgaag attattttca aaaactcttt gattttaacg aaagtaaaat
     4681 actaaaagca agcttaaata atgaaattct tgcttatgta tcattttttc tttgtggaga
     4741 tttttcttat tatcatttaa gtgccaatgt tttaaaatcc aatgccaatg cagctttatt
     4801 ggatttcttt tttgaatatg caagtaacaa taattccaaa ttttgtttct tgggtggagg
     4861 aattcaagat aacgatacgc tttacaaatt taaagaaaaa ttttctacta taaatggaag
     4921 tttttatata ggtggtatag tttttaatca gaaagaatat aaccaaattt gtaaaaattt
     4981 tagcaataat aaatttttaa aataccgata ttaaaaaata atatctagaa tatttatatt
     5041 aattccaatt aaggaaaact atgaaaaaaa ccctcatcat cgcagaagca ggagttaatc
     5101 acaatggtga tttaaattta gctaaaaagt taatagaaat cgcagcagat tcaggggctg
     5161 attttgttaa atttcaaagt tttaaagcca aaaactgtat cagcacaaag gctaaaaaag
     5221 caccctatca gcttaaaacc acagctagtg atgagagtca gcttcaaatg gtacaaaaac
     5281 tcgaactcga tcttaaagct cataaagagc ttatcctaca cgcaaaaaaa tgcaatattg
     5341 cctttctttc tactcctttt gatcttgaaa gtgtagatct tttaaatgag ttaggcttaa
     5401 aaatctttaa aattccaagc ggagaaatca ccaatctacc ctatcttaaa aaaattgcaa
     5461 agcttaataa aaaaatcata ctttcaacag gcatggcaaa tttaggcgag atagaagaag
     5521 ctttaaatgt gctttgcaaa aatggcgcta aacgccaaaa tatcactctt ttgcactgca
     5581 ctacagaata ccctgcccct tttgatgaag tcaatcttaa agccatgcaa agcttaaaag
     5641 acgcttttaa gcttgatgtg ggttattctg atcacactca aggcatacac atttccctag
     5701 ctgcggttgc cttgggagct tgtgtgatag aaaagcattt tactctagac aaaaatatgt
     5761 cagggcctga tcataaagca agcctagaac ctcatgaact aaaaacgctt tgtattcaaa
     5821 taagacaaat acaaaaggct atgggtgatg gcataaaaaa agcaagcaaa agcgaaagaa
     5881 aaaatattaa catagtaaga aaaagtttag tcgctaaaaa agatatccaa aaaggagaaa
     5941 tttttaacga agaaaatctt actaccaaac gcccagcaaa tggtataagt gctatgagat
     6001 atgaagagtt tttaggtaag attgctacta aaaactacaa agaagatgag cttatccgtg
     6061 agtaaaagaa aaatttgtat agtcagtgca acaagggctg aatggtatct tttaagaaat
     6121 ttatgccatg aaattcaaaa cgataaagat ctaaaccttc aaatcatcgc tacaggggca
     6181 catttaagcc ctgagtttgg actcacttat aaagaaatag aaaaagaatt taaaataact
     6241 aaaaaaatcc ctatcctgct tgcaaacgat gataaaataa gcctttgtaa aagtatgagt
     6301 ttagctttta gtgcttttag cgatgctttt gaagacttaa atcctgatac ggtggttatt
     6361 ttaggcgatc gttatgaaat gcttagcata gcaagtgtat gtctattgat gcacatacct
     6421 ttagtacatt tatgtggcgg ggagcttact ttaggagcta ttgatgatag tataagacac
     6481 agcatttcaa aaatgtcaca tttacatttt gtaagtcatg aaatttataa aaaaaggctt
     6541 ttgcaacttg gagaagaaga aaaaagggtt tttaatatag gatctttagc ttctactatc
     6601 ataaaaaata tgaatttttt aaacaaaaaa gatttagaaa aagccttaga aatgaaacta
     6661 gataaagaac tttacttaat cacttatcat cctttaacct taaatgtaaa aaatactcaa
     6721 aaagaaatta aaaccttact taaaaaactt gacaccctta aaaacgcaag tttgattttt
     6781 accaaagcaa atgccgatga aaatggactt ttaatcaatg aaattttgca aaattactgc
     6841 caaaaaaact cacacaaggc taaacttttt gataatcttg gttcacaaaa atacctaagt
     6901 cttatgaaaa tagccaaggc catgataggc aattcttcaa gtggtattag tgaaagtcct
     6961 ttttttaaaa ctccttgcat taatataggc aatagacaaa aagggcgttt aagaactcaa
     7021 aatatcattg attgtgaaat taatgatctt gatcaagctt ttgaaaaatt agaaagcaaa
     7081 gaatttaaac aaaatttaaa aaattttaaa aatccttatg ataatgataa aaatcccaat
     7141 aaattcataa aaacttgcct aaaaaatgta aatttagata caattttaca taaaaatttc
     7201 atcgatttat aaggcttagt gtggatatag acaaactcaa actcacccct gattctagca
     7261 taaaagacgc tttaaaaata gtcgggcaag aacgcgttag actaggcatt atagttgata
     7321 aaaaggataa atttttagga gtcattagcg attcaaacat cagaaaagct ttaattaatg
     7381 gtaaaacttt aaaagatagt atcaagggta tttacactaa aaatcccatc accataaaag
     7441 aaaacacaag caaagaacag cttttaaaac tttcatctaa aaccgatatt tatgactttc
     7501 ctgttttaga tgaaaaaggg caaattcttt ctataaaatc tatctcatca cttttaaaag
     7561 ctaatccaaa ctccattatc atcatggctg gaggcttagg ctctcgctta aaagagctga
     7621 ctaaagatac tccaaaacct atgttaaaag taggcaaaaa acccatttta gaaagcatag
     7681 tccaaagact taaaaatcaa aattttgaaa attttatctt ttgtgtgaat tataaaaaac
     7741 aaatcataga agattatttt caaaaagggc aaaaatttgg ggttaaaatt tcttatatta
     7801 aagagcgtaa aaaactaggt acagcagggg ctttaagcct tataaaacaa gaatttaaag
     7861 aaagttttat cgttatgaat gcagacattt taaccgagct tgattttaat gatcttttaa
     7921 aagcgcataa aaaatcaaaa gctttaatga gcgtttgcgt gcgtgagttt gagcaacaaa
     7981 ttccttatgg agtaatcacc caaaaacaag gttttataga aaatatagaa gaaaaaccta
     8041 cccaaaaatt cctagtaagt gcggggattt atgtacttga aaatgaaatt ttaaatttaa
     8101 ttgctaaaaa tgaatactta gacatgccag aactcatcaa acttgtattg caaaaaggca
     8161 aagtaaatac ttatatcatc aacgattatt ggattgacat tggaaagcca gatgagtttt
     8221 taaaagccaa tgaggatttt aaatgaaagt cttaatcata ggctttggaa gtataggaaa
     8281 aaagcatttt ttagccttaa aaaatttaaa gtatgaagta agtttgcttt ctttaagtgc
     8341 taaaaaagaa gaatttaaaa atactccaat ttatcgctct ttgaaagaat gtgatttaaa
     8401 cgaatttgat ctttttatca tcgcaaatat cactacggag cattttaata ccttaaaagc
     8461 tttagatgag cttgtaaaag ataaaatcat actcgtagaa aaacctttat ttgaaaaaag
     8521 ccaaaatttc acaagctcaa aaaatcacat ttatgtagca tatttactgc gttttaatcc
     8581 tgtgattgtg gctttaaaaa ggcttttaaa aggtgaaaaa atttattttg ctagtttggt
     8641 ttgtaattct tatttgcctc attggagagc catagattac aggcaaaact atagcgctaa
     8701 aaaagagcta ggtggtgggg ttttgctcga tctttctcat gaaatcgatc tagccttttt
     8761 tctttttaaa gacttagagc ttatatactc ccaaaatgct aaaatttcag agcttgacat
     8821 aacaagcgat gattttgcct ttttggcttt aaaaaattca caagaagcta aaattcatat
     8881 agaactagac tatttttcta aatttaacaa aagagaaatt atcatccata ctttagaaaa
     8941 aagctttaaa gccgatttga taaacaataa aatcgaaatt tatcacaaag atcaaagtca
     9001 aaaaatctta aattttgaaa acgatacgat aaaaaccctt caaaatttac atcaagcagt
     9061 ctttgaacaa aacaaagaac tttgcgatct taagcaagct ttaaaagtac ttgaaatttg
     9121 tgataaagta aggaaaaaaa atggctgaaa ttttatgcac catttgtgct aggggtggga
     9181 gcaagggcgt taaaaacaag aatattagaa agattaacga acttgaaatg atagcttata
     9241 gcatcataca agctcaaaat tcaaagcttt ttaaacacat agtcataagc accgatagcg
     9301 atgaaatcgc aagtgtagcc caaaaatacg atgctgaagt tttttttaaa agagaagccc
     9361 atcttgccaa tgatcgggct gcaaaacttc ctgtcatgcg tgatgccttg ctaagaagtg
     9421 aagagcattt taaaacgtgt tttgaaactc tcatagactt agatgcttca gccccgcttc
     9481 gctcaagcct tgatataaaa aaagcttatg aaagttttgt tgaaaatgat aattccaatc
     9541 tcatcaccgc agttcctgct agacgcaatc cttattttaa ccttgtagaa atacaaaata
     9601 acaaggtagt aaaatccaaa gaaggaaatt ttaccactcg ccaaagtgcc ccaaaatgct
     9661 atgatatgaa cgctagtatt tatatcttta aaagggatta tcttttagaa aatgatagtg
     9721 tttttggcaa aaacacaggg ctttttgtaa tggatgaaag cacagctttt gatattgata
     9781 gcgagcttga ttttaaaatc gtagagtttt taatctcttt aaaaaattta tcaccaaagg
     9841 atttttaatg cttgaaaata aaatcatctt tgtagcagga gcttgtgggc gtataggtaa
     9901 agcgctttgt caaaaaatac ttcttagcaa aggtatccct atactcgcag atatcaacaa
     9961 agaacgctta aataaattgc aagaaaattt agaaacaaat tttaaaacaa aacttttaag
    10021 cttagaactt gatatcacta aacaagaaag cttacaaacc gcccttcaaa aaagtcaaga
    10081 aagatacggc aaaatcgatg cttttgttaa ctcaagctat ccttttggca aagattgggg
    10141 tagaacacct tattatgaac tcaaatacga acaaatttgt gaaagtttaa atttacattt
    10201 agcaggcttt atgctagccg ctcaagaatt tgtgaaattt tttaaacaac aaggctatgg
    10261 taatatcatc aatcttagct ccatcatggg agtttatgcg ccaaaatttg aaaactatga
    10321 aggcacttcc atgcaaagct ctttagaata cagtgtgata aaagcaggga ttaatcacat
    10381 gagctcttgg ctagctaaag agctttttaa tcaaaacata cgcgttaata ccctagcaag
    10441 tggaggaatt ttggataatc aaaatgaact ttttttaaaa gcttatagaa aatgttgtgc
    10501 aagcaagggt atgttagatg ctgatgatgt gtgcggaacc ttggtatttt tgcttagcga
    10561 tgagagtaga tttatcacag ggcaaacctt agtggtagat gatggatggg gcttatgatg
    10621 accttcaccc ctactcaaaa agaacttttt aacaaaaaca ttgaggcttt aagcaatatt
    10681 cttttaaaag aaagtttaaa agaaattaaa tcaagtaaat ttgaacttat cttaggtaaa
    10741 gataatctag atatcaattt aaaagataca agt
//
LOCUS       DAZAND010000063        10594 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.063, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000063 DAZAND010000000
VERSION     DAZAND010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10594
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.063"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(46..429)
                     /gene="queF"
                     /locus_tag="ACHDOB_001219"
     CDS             complement(46..429)
                     /gene="queF"
                     /locus_tag="ACHDOB_001219"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046857 - oxidoreductase activity, acting
                     on other nitrogenous compounds as donors, with NAD or NADP
                     as acceptor [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HFN3326142.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            complement(675..3272)
                     /gene="flgE"
                     /locus_tag="ACHDOB_001220"
     CDS             complement(675..3272)
                     /gene="flgE"
                     /locus_tag="ACHDOB_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HFN3326143.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQ
                     FYTTSKNSVEVTEKGVDAGSLFNAKGQGLNLRDGQGIWVSYADATYSTNKVGVNAFDP
                     NLQQNQTAAFWGTANQKVNLDITLNGVRIQNANIQSIDDAIAYINTFTAPTDTRDGTG
                     VKAVKNKDGSGIDFVNDNADGTTDNMKNINLVVANTNTAGELWNAVWDNNNQTFTFNN
                     TGNGQAGTPTINKNGSSLWTATNITFAPQPPQAATNVQLTGGLNAQIITAHKYIYSSN
                     PVDIGPMYNPDGGPAFQPGANATTRPTEPGSAAYWDAVNGGLLNTNVRTFRTTEDLRE
                     LLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANEQSTVPPNAINGVGN
                     ATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQIKESEQLKLSAFS
                     AGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIIVGT
                     ARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQAT
                     DGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVT
                     ANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQM
                     LQTLIQLKQ"
     gene            complement(3476..3958)
                     /gene="ruvC"
                     /locus_tag="ACHDOB_001221"
     CDS             complement(3476..3958)
                     /gene="ruvC"
                     /locus_tag="ACHDOB_001221"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HFN3326144.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            4054..5376
                     /gene="dnaA"
                     /locus_tag="ACHDOB_001222"
     CDS             4054..5376
                     /gene="dnaA"
                     /locus_tag="ACHDOB_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HFN3326145.1"
                     /translation="MNPSQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAIIHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKILVKSQS"
     gene            5536..6603
                     /gene="dnaN"
                     /locus_tag="ACHDOB_001223"
     CDS             5536..6603
                     /gene="dnaN"
                     /locus_tag="ACHDOB_001223"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HFN3326146.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            6632..8941
                     /gene="gyrB"
                     /locus_tag="ACHDOB_001224"
     CDS             6632..8941
                     /gene="gyrB"
                     /locus_tag="ACHDOB_001224"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HFN3326147.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEASYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(8967..9308)
                     /locus_tag="ACHDOB_001225"
     CDS             complement(8967..9308)
                     /locus_tag="ACHDOB_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HFN3326148.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(9311..10549)
                     /locus_tag="ACHDOB_001226"
     CDS             complement(9311..10549)
                     /locus_tag="ACHDOB_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HFN3326149.1"
                     /translation="MKQNNQKEDRRDFLKNIGFGLLGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YVSNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
BASE COUNT         3693 a         1740 c         1657 g         3504 t
ORIGIN      
        1 atacttaatc tttacataaa aatatgttaa tattttactt aaatattatt ttggcactac
       61 catatcgcta cgacattcta tcaccgtatg cacatttcca cgcgggttaa aatcccccac
      121 aactttaatc cattttggtt ttaatttatc ttttaaagta ttataaattt cattgatact
      181 tgcttcatgt gaaacatttc tatacataaa agtattgata taaagtttta tcgccttaag
      241 ctcaaccaca aatttatcag gcatatactc aagataaatc gtcgcaaagt caggataacc
      301 cgaacgcgga caacaacaca taaattcagg taaagtgatt ttaatgatat agtcattttt
      361 agcatcattt ggccaaattt ccatattttc tacatcaaat tctttgattt ccttttcacc
      421 ataacgcata aatttcctta aatttaaatt cgagcaaaaa ttataacaaa ataagttttt
      481 aaaacgatta taatacagat aagaaaatgc aattttattg caactcaccc cctagcaaga
      541 gtgagttagc aataaattga aggcagttca agcctaagcc tagtattaca agactaccaa
      601 gataggcttg taaagcaagg cttgctccct taaagggagc aaaaaacaat attttataga
      661 atactaagct taaattattg tttaagctgg attagagttt gaagcatttg atcactcgtt
      721 gaaatggttt ttgaatttgc ttgataacct ctttgaatga taataagctc tgttaaagaa
      781 cgacttaaat ccacatttga catttcaaga gctgaggttt tcatctcacc acgacctcct
      841 gttcctgctt cacctactac gatattacca ctatttgcag tgactttaaa aagatttcca
      901 ccgatttctt caagacctga gttatttgcc actgaagcca ttgctatttt tgctacagca
      961 aaggttttac cattagtaaa ttcacctaag atatttcctt tatcatctac acggatagca
     1021 tcaggtttta agttacctga agtataacca tcagttgcct gtcctgttag agttgaagca
     1081 gaatttgagc ttacaagacc atcattgctt ccgcttgttc caaaggaaag tttaatttgt
     1141 tgatttggtg cggcaccatt atttggtgaa aaatttatcg ttcttggtgt ataactagct
     1201 aaagatccat cattattaaa tcttgctgtt cctacgatga tattgtttgg tccttcgcct
     1261 gtagtgttaa tctcagcagg ttctggcaca cggataatca tttgccattc attaccccca
     1321 tcttgagtgg tgctttgctt aacaaactgc acttctaaag tatgttttga acctaaggaa
     1381 tcataaattt caagtcctgc tgaaaaagca gaaagcttaa gttgctcgct ttctttgatc
     1441 tgatttccta taaccaaagg accatcgaaa gctttaaaaa tagcagtgaa agcatcatta
     1501 gtacttacag ttccttgttt gttactataa gctgttatat taaaactcat attttttgga
     1561 tctgttgtag tggcatttcc tacaccatta atagcatttg gtggaacagt tgattgttca
     1621 ttagcattgg aaatagcaaa atgtccatct gccgttacta ctacttttat attttgatta
     1681 atatcagctg cagcaaaagt tccacttcca tcataatcaa ccccatatct agcatccctt
     1741 tgtaaaagtt ctcttaaatc ttctgtggtt ctaaaagttc ttacattagt atttaaaagt
     1801 ccaccattaa cagcatccca ataagctgct gaacctggtt cagttggtct tgtagttgca
     1861 ttagcaccag gctggaatgc tggtccaccg tcaggattat acataggacc tatatccaca
     1921 gggtttgaac tataaatata tttatgtgct gttattattt gtgcatttag tccaccagta
     1981 agctgaacat tcgtagctgc ttgaggaggt tgtggtgcaa atgtaatatt tgtagctgtc
     2041 cacaaagaag aaccattttt attaatagtc ggtgttccag cctgtccatt accagtatta
     2101 ttaaatgtaa atgtttgatt gttgttatcc catacagcat tccaaagctc acctgctgta
     2161 ttggtattgg caaccacaag attgatattt ttcatattat ctgtagtacc atcggcatta
     2221 tcattgacaa aatcaattcc actaccatcc ttatttttaa ccgcttttac acctgttcca
     2281 tcccttgtat ccgttggtgc agtaaaggta ttgatataag caatagcatc atcaatactt
     2341 tgaatattag cattttgaat tctaacccca tttaaagtta tatctaaatt cactttttga
     2401 ttagctgttc cccaaaaagc agcagtttga ttttgctgta aatttggatc aaaagcattt
     2461 actcctactt tattggtaga atatgttgca tctgcataag atacccaaat tccttgtcca
     2521 tctctaagat taagtccttg tcctttcgcg ttaaaaagcg agcctgcatc tacacctttt
     2581 tcagttactt ctacagaatt cttagaagtc gtgtaaaact gagtggttcc tgtatcattt
     2641 tcatcttcgg ctctttgggt tttagtattc catccatgaa cagaatcaag tgcataaaga
     2701 tttctacttg aagttcctat atttaaaccg ctatttaaat tcgctttgat ggctacttct
     2761 gtggattttg ctgcagggat atgcatacct ggatcgataa aaatattttg tggagttctt
     2821 gaactatcta tagtttgatc atcccagttt atattccatc cttggacaac aaaacctgca
     2881 ttgtttacaa aattcccata agcatcaagt ttaaaatccc cgctccttgt aagatagttt
     2941 gtaagccccc catcatcact caccataaaa aaaccatcac catttatagc aacgtcagtg
     3001 tttttatctg tggtttgaac tgaaccttga gaatgaattc tagttgtaga acttactgaa
     3061 acgccaagac cgatttgaag tggattagat ccacctcttc catcagttgg agctgtagcg
     3121 attttcacag tttggctaaa catagtccca aaatctgcac gggagtattt aaaaccagtg
     3181 gtattaacat ttgaaatgtt attaccttca acatccatcg caacttgatg tgcttgtagt
     3241 ccgcttacgc cagaccaaag tgatctcatc atcttaaatc ctttataaaa tattgcttta
     3301 aaaaatttaa cgctttggct ttaaaaaact tttgcgttta tgtgaagttt acaagcaagt
     3361 tctgttccaa cttttgaaat tttttatgaa ttttttaaaa atttatagaa aaaatttaaa
     3421 ggtattttgg gagtttatga agctttggtc ttttgtgtaa tgaaaattac caaaatcaca
     3481 ccctaactct taaatttgct gcatgggtta aagccactgc aatagcatct gtgatatcca
     3541 aaggcttgat atctttacta agtcctaaaa gtctttttac cataaaagca acttgttctt
     3601 tggttgcttt ggcttttcct gtaacggctt tttttacttg taagggagtg tattctgcaa
     3661 aatctccatg aatttgaaga atttttaaag atagggctcc gcgaaattgt gcgagtttta
     3721 aaacggtttt tggattgtaa gcaaaaaaga tatcttctat agccacctca tcaaaagaat
     3781 gatttttaaa aatcaagtcc aaaccctcgc aaagctctgt gatttgatac tgtaaggtac
     3841 ttggctttat ctttataagt cctgcttcta tgagaatgtt ttttcctttg tcagcttcta
     3901 tgatagcata accacaattt ctcgaacctg gatctatacc taaaattttc aaattcatac
     3961 cttttgaaaa ataaaataca aaagcggatt ttaacctttt tttataaaat ttaagataaa
     4021 atttatacat tatgcaaaat ttaaagagag attatgaatc caagccaaat acttgaaaat
     4081 ttaaaaaaag aattaagtga aaacgaatac gaaaactatt tatcaaattt aaaattcaac
     4141 gaaaaacaaa gcaaagcaga tcttttagtt tttaacgctc caaatgaact catggctaaa
     4201 ttcatacaaa caaaatacgg taaaaaaatc gcacattttt atgaagtgca aagtggaaat
     4261 aaagccatta taaatataca agcacaaagt gctaaacaaa gtaacaaaag cacaaaaatc
     4321 gacatagctc atataaaagc acaaagcacg attttaaatc cttcttttac ttttgaaagt
     4381 tttgttgtgg gggattctaa caaatacgct tatggagcat gtaaagctat aatacataaa
     4441 gacaagcttg gaaaacttta taatcctatc tttgtttatg ggcctacagg acttggaaaa
     4501 acacatttac ttcaagcagt tggaaatgca agcttagaaa tgggaaaaaa agttatttac
     4561 gctaccagtg aaaattttat caatgatttt acttcaaatt taaaaaatgg ctctttagat
     4621 aaatttcatg aaaaatatag aaactgcgat gttttactta tagatgatgt gcagttttta
     4681 ggaaaaaccg ataaaattca agaagaattt ttctttatat ttaatgaaat caaaaataac
     4741 gatggacaaa tcatcatgac ttcagacaat ccacccaata tgctaaaagg tataaccgaa
     4801 cgcttaaaaa gtcgttttgc acatgggatc atagctgata taactccacc tcaactagat
     4861 acaaaaatag ccatcataag aaaaaaatgt gaatttaacg atatcaatct ttctaatgat
     4921 atcataaact atatcgccac ttctttaggg gataatataa gagaaatcga aggtatcatc
     4981 ataagtttaa atgcttatgc aaccatacta ggacaagaaa tcacactcga acttgccaaa
     5041 agtgtgatga aagatcatat caaagaaaag aaagaaaata tcactataga tgacatttta
     5101 tctttggtat gtaaagaatt taacatcaaa ccaagcgatg tgaaatccaa taaaaaaact
     5161 caaaatatag tcacagcaag acgcattgtg atttacctag ctagggcact tacggctttg
     5221 actatgccac aacttgcgaa ttattttgaa atgaaagatc atacagctat ttcacataat
     5281 gttaaaaaaa tcacagaaat gatagaaaat gatggttctt taaaagcaaa aatcgaagaa
     5341 cttaaaaaca aaattcttgt taaaagtcaa agttaagtga aaggatgtga aaaataaatt
     5401 ctagagtgtg aaaaaaagaa attaagcaaa gtatgataaa atacaaattt gattattttg
     5461 ctttgaagaa tttcacaatt tcaacaagct tattattaca acgaatttaa aattaaaata
     5521 aaccaaggag aaaaaatgaa gttaagtatc aataaaaata ctttagaatc tgcagtgatt
     5581 ttatgtaatg cttatgtaga aaaaaaagac tcaagcacca ttacttctca tctttttttt
     5641 catgctgatg aagataaact tcttattaga gctagtgatt atgaaatagg tatcaactat
     5701 aagataaaaa aaatccgcgt agaatcaagt ggttttgcta ctgcaaatgc aaaaagtatt
     5761 gcagatgtta ttaaaagctt aaacaatgaa gaagttgttt tagaaaccat tgataatttt
     5821 ttatttataa gacaaaaaag cacaaaatac aaacttccta tgtttaatca tgaagatttt
     5881 ccaaattttc caaatacaga aggaaaaaac caatttgaca ttgattcaag tgacttaagt
     5941 cgttctctta aaaagatatt accaagtatt gatacaaaca acccaaaata ctccttaaat
     6001 ggtgcatttt tagatataaa aacagataaa attaacttcg taggaactga tacaaaacgc
     6061 cttgcaatct atactttaga aaaagcaaat aatcaagaat ttagttttag tatccctaaa
     6121 aaagctatta tggaaatgca aaaacttttc tatgaaaaaa tagaaatttt ttatgatcaa
     6181 aatatgctta tcgctaaaaa tgaaaatttt gaattcttta caaaacttat caatgataaa
     6241 tttccagatt atgaaaaagt tataccaaaa actttcaaac aagaactcag tttttcaact
     6301 gaagatttta tagatagtct taaaaaaatc agcgttgtaa ctgaaaaaat gaaacttcat
     6361 tttaacaaag ataaaatcat ctttgaaggt ataagtttag acaatatgga agcaaaaaca
     6421 gaacttgaaa ttcaaacagg agtaagtgaa gaatttaatc ttactataaa aatcaaatat
     6481 ttacttgatt tcttaacttc tatagaagaa gaaaaattca ctttaagtgt aaatgaacct
     6541 aattcagcat ttatagtcaa atcccaagga ctatcaatga ttatcatgcc tatgattttg
     6601 taataaaaca agtaaaagat aaaggaaaaa tatgcaagaa aattacggtg cgagtaatat
     6661 taaagtccta aaaggcctag aagctgttag aaaacgccca ggtatgtata taggagatac
     6721 aaacataggc ggacttcatc atatgattta tgaagttgta gataattcta tcgatgaagc
     6781 tatggcagga cattgtgata ctatagatgt agaaatcact actgaaggaa gctgtatagt
     6841 tagtgataat ggtcgtggta ttcctgttga tatgcaccca actgaaaata tgccaacttt
     6901 aactgttgtt ttaactgtcc tacatgcagg gggaaaattc gataaagata cttacaaagt
     6961 ttcaggcggt ttgcacggtg ttggggtttc ggttgtaaat gcactctcta aaaaacttgt
     7021 agctacagtt gaaagaaatg gagaaattta tcgtcaagaa ttttcagaag gtaaagttat
     7081 cagtgaattt ggtgtgatag gaaaaagtaa aaaaacagga acaactatag aattttggcc
     7141 tgatgatcaa atttttgaag taactgaatt tgattatgaa attttggcta aaagatttcg
     7201 tgaacttgca tacttaaatc caaaaatcac tataaatttt aaagataacc gcgtaggcaa
     7261 acatgaaagt tttcactttg aaggtggaat ttctcagttt gttacagact taaataaaaa
     7321 agaagcttta actaaagcaa ttttctttag tgtagatgaa gaagatgtga atgttgaagt
     7381 agctttgctt tacaatgata cttatagtga aaatttactc tcttttgtaa ataatatcaa
     7441 aaccccagat ggtggaacac acgaagctgg ttttagaatg ggcttaactc gtgtgataag
     7501 taactatata gaagcaaatg caagtgctag agaaaaggat aataaaatca cgggtgaaga
     7561 tgtgcgtgaa ggtttaatcg ctgttgtgag tgtaaaggtg cctgaaccac aatttgaagg
     7621 acaaaccaaa ggaaaacttg gttcaactta tgtgcgtcct atagtttcaa aagcaagttt
     7681 tgagtatttg actaaatatt ttgaagaaaa tcctatcgaa gctaaagcta taatgaacaa
     7741 agccttaatg gcagctagag gaagagaagc agcgaaaaaa gctagagaat taacgcgtaa
     7801 aaaagaaagt ttaagcgtag gaactttacc agggaaattg gctgattgtc aaagtaaaga
     7861 tccaagtgaa agtgaaattt atcttgtgga aggggattct gcaggaggtt ctgcaaaaca
     7921 aggtagggaa agatctttcc aagctatact gcctttgcgt ggtaaaattt taaatgttga
     7981 aaaagcaaga ctagataaaa ttttaaaatc tgagcaaatt caaaatatga ttaccgcttt
     8041 tggctgtggt ataggtgaag attttgatct ttcaaaactt agatatcata aaatcatcat
     8101 catgacagat gcggatgttg atggatctca tatacaaacc ttgcttttaa ctttcttctt
     8161 ccgttttatg aatgaacttg tggcaaatgg acatatttat ttagcacaac cacctttata
     8221 tctttataaa aaagctaaaa agcaaattta tttaaaagat gaaaaagctt tgagcgaata
     8281 cctgatagaa acgggaatag aaggtttaaa ctatgaaggt ataggaatga atgatttaaa
     8341 agattattta aaaatcgttg cagcttatcg tgcgatttta aaagatcttg aaaagcgttt
     8401 taatgtgatt tctgtgatac gctatatgat agaaaattca aatttagtta aaggaaataa
     8461 tgaagaatta tttagtgtaa tcaaacaatt tttagaaaca caaggacaca atatcttaaa
     8521 tcattatatc aatgaaaatg aaattcgagc tttcgttcaa actcaaaatg gcttagaaga
     8581 acttgtgatc aatgaagaac ttttcactca tccactatat gaagaagcaa gttatatttt
     8641 tgataagatt aaagatagag gcttggaatt tgataaagat attttagaag ttcttgaaga
     8701 tgttgaaacc aatgctaaaa aaggtgctac tatacaacgc tataaaggtt taggggaaat
     8761 gaatcctgag caactttggg aaactacaat ggatccaagc gtaagaagac ttttaaaaat
     8821 cactattgaa gatgcacaaa gtgcaaatga tacctttaat ctctttatgg gtgatgaggt
     8881 tgaaccaaga cgcgattata tccaagcaca cgctaaagat gtaaagcatt tagatgtgta
     8941 aatttatcat tgaagaaatg atttcttcaa tgagttttgt tttgtaagag tatagctaga
     9001 ggaattcttc ttcttgtatc gtatttttct ccataatatt tttcaagata atttaaaatt
     9061 ttttcttcat cttcaggttc tatttcccaa agtccttcac tatcttgcat ccatcttata
     9121 gctgctaacc aagcttttct acttgcatgc atattggtaa tgagattgga tccatgacaa
     9181 gctaaacaat ttgcttccac taacggtgaa tcaggatcga taatcaatcc tgtatcaggg
     9241 ttaatttcaa gattttgagc ccaacttgca ctcaaaaaca atgctaagat caatataatt
     9301 tttttcatac ttaaactcca taaacattaa ctctatggca tgcattattg atatatcctc
     9361 ctggattcca ctgtgctaaa accataggtt gactgttacc ttgactatcg atagctcttg
     9421 cccaaatttc ataatatcct tttgttggta ttgatatttg agcactccat ttttgccatg
     9481 ctaatctatt taatggtttt tctacctttg ctttagtcca tgttacgcca taatcattgc
     9541 ttacataaac ttcactaact tcaagttctc cagcccaagc tttacctcta acttcaaatt
     9601 ttttatttgc ttttatttca gaaccatttt tgatattagt aattacagat cttataggca
     9661 ttgattctat gattttcatc tcgcctttat agttaaaatc tcctggtttt accggattta
     9721 caggaacttt ataagaacct tccatttttt caccatcgtg aattttattt cttactgaaa
     9781 ttttataaag ccatttaccg cttgtacttg cagggtaacc accacaaaca agtctaagtg
     9841 gatagccatt gactaaagga atatctttgc cttcataagc ccaagctatt agagtttcat
     9901 cttgtaaagc tttagaaata ggaactcctc tactaatagg tgaagtttct tcaccattta
     9961 attttgtatc tatgccataa tatccgatat aaaccgcatc atttttgatg ccacaatctt
    10021 ttaaaatatc ttttaaacgc actcctgtcc atctaccgca agctactgca ccataacccc
    10081 attgagttcc ttttgtgcta ggtataactt cggatctacc atttccaccg cattcaactg
    10141 ttaaggcata agtataggtt ttaaatttct tttttaaatc ttctatggtg taagattttt
    10201 tattgataat gctttctcca tcgatttcta aagtccaacc tttatgaagt ctttctttta
    10261 tcgtttctag gcttggtggt aagccattat ttctaacaaa gaaattttca ggtttagtaa
    10321 aatcagaatc aagagcataa atttcagttt ctgctgttaa tggtttttca ccatgataga
    10381 taagatcttt tttaccttct attttaaaat caggcaattc ttttgccaaa gccttacttc
    10441 ctaaaaaatt ctcaaaagaa aaatttgaca atacgctgat accaagcaaa ccaaatccta
    10501 tattttttaa gaaatctctg cgatcttctt tttgattgtt ttgtttcatt gaaatatcct
    10561 tatattttta tgattttttt attttattat aaat
//
LOCUS       DAZAND010000064        10470 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.064, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000064 DAZAND010000000
VERSION     DAZAND010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10470
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.064"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            68..676
                     /gene="plsY"
                     /locus_tag="ACHDOB_001227"
     CDS             68..676
                     /gene="plsY"
                     /locus_tag="ACHDOB_001227"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HFN3326150.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            661..978
                     /gene="folB"
                     /locus_tag="ACHDOB_001228"
     CDS             661..978
                     /gene="folB"
                     /locus_tag="ACHDOB_001228"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HFN3326151.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKKEEFYTLEESLDFVSLNLKKDFPNLTNLNIKIFKPHIIKNATVGVKFK
                     KKY"
     gene            1057..1728
                     /gene="hsrA"
                     /locus_tag="ACHDOB_001229"
     CDS             1057..1728
                     /gene="hsrA"
                     /locus_tag="ACHDOB_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HFN3326152.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            1841..2086
                     /gene="fdxB"
                     /locus_tag="ACHDOB_001230"
     CDS             1841..2086
                     /gene="fdxB"
                     /locus_tag="ACHDOB_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HFN3326153.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            2086..3546
                     /locus_tag="ACHDOB_001231"
     CDS             2086..3546
                     /locus_tag="ACHDOB_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HFN3326154.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(3543..4340)
                     /locus_tag="ACHDOB_001232"
     CDS             complement(3543..4340)
                     /locus_tag="ACHDOB_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326155.1"
                     /translation="MRLLVLFFLILPLYSVELISFNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTANNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVVFDHANKRYTMIIGNSNV
                     LLESVEIPEEQIIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(4341..4649)
                     /gene="fliN"
                     /locus_tag="ACHDOB_001233"
     CDS             complement(4341..4649)
                     /gene="fliN"
                     /locus_tag="ACHDOB_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HFN3326156.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(4649..5071)
                     /locus_tag="ACHDOB_001234"
     CDS             complement(4649..5071)
                     /locus_tag="ACHDOB_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HFN3326157.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
     gene            complement(5142..5891)
                     /gene="trpA"
                     /locus_tag="ACHDOB_001235"
     CDS             complement(5142..5891)
                     /gene="trpA"
                     /locus_tag="ACHDOB_001235"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HFN3326158.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(5884..7062)
                     /gene="trpB"
                     /locus_tag="ACHDOB_001236"
     CDS             complement(5884..7062)
                     /gene="trpB"
                     /locus_tag="ACHDOB_001236"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HFN3326159.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(7059..7658)
                     /gene="trpF"
                     /locus_tag="ACHDOB_001237"
     CDS             complement(7059..7658)
                     /gene="trpF"
                     /locus_tag="ACHDOB_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HFN3326160.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGFIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFILAGGIGLDN
                     VHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(7645..9246)
                     /gene="trpD"
                     /locus_tag="ACHDOB_001238"
     CDS             complement(7645..9246)
                     /gene="trpD"
                     /locus_tag="ACHDOB_001238"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HFN3326161.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDEISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPLNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKSQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALSITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(9243..>10470)
                     /gene="trpE"
                     /locus_tag="ACHDOB_001239"
     CDS             complement(9243..>10470)
                     /gene="trpE"
                     /locus_tag="ACHDOB_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HFN3326162.1"
                     /translation="YYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELSFSEFKAKY
                     YEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKAYLIYEKNS
                     KMFFKFGASKYFEYLKDDIEPIKTKQKNDFEILNSLEDEKNDFLKMCEKAKEYLLSGD
                     IFQVVLSKQLCIKHQVNAFDYYESLSTLNPSAYMFYFPSKYGVVLGSSPEFLLKIKKR
                     EIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKFGTQTRVEN
                     LFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALEIISELEDC
                     DRGVYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQKEYAEICAK
                     RRALLVAFENLKKENQ"
BASE COUNT         3700 a         1811 c         1277 g         3682 t
ORIGIN      
        1 ttattttcat aagatataat ttttagttat aaatcttaaa attttaagat gatttgaaaa
       61 ggatattatg gaaaatttaa taatttacgc ttttatatat cttttaggtt caatcccttt
      121 tgggctaatc ctagctaaat tttttgctaa aactgatatc aaaaaagaag gttcaaaaag
      181 tataggagca accaatgttt taagagtagt aaaagaaaaa aatcccaaac tagcaaaaaa
      241 acttgccatt gctacaataa ttttagattt tgcaaaagca gctattcctt tactaatctt
      301 gaaatttctt cattatgatc aagctttgct ttggagcgtc gcagttttgg ctatttttgg
      361 acactgtttt tcaatttact tgttatttga aggagggaaa ggcatagcaa caggagcagg
      421 cgctatgata gttttacttc cattggaagt gcttacagca tttattgtgt gggtagttat
      481 tggaaaaatt tttaaaatat cttcgctagc ttctttagca gcgttacttg cttttgttat
      541 aagttctttt atatttaatt atgacttaga aattcataca catgcacccg ttttcattat
      601 cgcttttatt atagtatata aacatctacc taatattaaa agattgattt ttaaagaaga
      661 atgcaaagtc atataaaaat aaaatttcac tttaagtgta tcattggtat attagatttc
      721 gaaagaagaa aaaaacaaaa aattattatc aagcttaaag ctaaagcaaa tgaattttta
      781 aattatgcag aggtaattac caaaattaaa acatggtata aaaaagaaga attttacacc
      841 cttgaagagt ctttagactt tgtaagctta aatttaaaaa aagattttcc taatttaacc
      901 aatcttaaca taaaaatttt caaaccccat ataataaaaa atgctacagt tggggttaaa
      961 tttaaaaaaa aatattaatt tttttttaaa gatatctaaa catttactta agctatgata
     1021 taattcttta aatttttctt aataaggata gaacaaatga gaattttagt tatagaagat
     1081 gagattagcc taaataaaac aattatagac aatcttaatg aatttggtta tcaaactgat
     1141 tcttctgaaa attttaaaga tggagaatac tttatcggca ttagacatta tgatttagtt
     1201 ttagcaaact ggactttacc tgatggagat ggagcggaac ttgttaacac tattaagcat
     1261 aaatctccaa gaacttcggt tatgattatg tcttcaaaaa cagacaaaga aacagaaatc
     1321 aaagctttga aagctggagc tgatgatttt gttaaaaaac ctttagattt tgatattcta
     1381 ctcgcaagaa ttgaagcaag actaagactt ggcggaacca atgttattaa aattgaagac
     1441 ttagttattg atccagatga ggaaaaaatt acttataaag gtcaagatat agaacttaaa
     1501 ggaaaacctt ttgaagtttt aacgcactta gcaagacatt cggatcaaat tgtatccaaa
     1561 gaacaacttt tagatgccat ctgggaagaa cctgagctag taactccaaa tgttatcgaa
     1621 gtagctatca atcaaattcg tcaaaaaatg gataaaccat taaatatatc taccatagaa
     1681 acagttcgtc gtagaggata ccgtttctgc ttccctaaaa aatcttaaca attttgcacc
     1741 ttcggtgcaa aaaatttatc tttatttcta tttttatatt ttatttaagt ttggttattg
     1801 tataaactaa aattattttt taaatttttg aaaggttatg atgtctcttt taattacaaa
     1861 agactgcgta tgttgtgatg cttgcagaga agaatgtcct gatgaagcta tttatgaaaa
     1921 tagtccaatt tatgtaatag accctgatct ttgttcagag tgcgttaatg atttttcaga
     1981 gcctgcctgt attgttgctt gcccatatga atgtatcatt cctgatcctg ataatgtaga
     2041 aactatagaa gaattaaaac tcaaacatag agatagagaa ttttaatggc aaaaaaaaca
     2101 gccgttgttg atcttggctc aaactccatt agaatggtga tttttgaaaa aacttctaga
     2161 tatggttttt atacaacttg cgaatacaaa cgcaaagtaa gacttggaga aaatgcttat
     2221 aataatggca aaattctcca agaagaagcc atgcaaagag ccgaagatgc cttagctttt
     2281 ttcaaacaat gcgctttaaa gcataagtgc aaaaaaatat ttatagtagg cacatcagcc
     2341 ttaagagatg ccccaaattc aaaaaatttc attaaaagaa tcaaagataa tctgtcttta
     2401 aatatacgct gtatagatgg aaaaagcgaa agttacttag gtggtcttgc agctctaaat
     2461 ttattaagtc cttttaaaga tggaaccact ttagacatag gtggtggttc tagtgaattg
     2521 tgtttaataa aaaataatag aattatttct tgcatatctc ttgatattgg cactgttagg
     2581 ctaaaagaat tgttctatga tactggaaaa atggattctt tagaagaatt tataaaacca
     2641 attttagaac aaattcctaa agaattttgc aatcaaaacc ttattgcaat aggtggaagc
     2701 ttaagagcaa tatctaattc catcatgcaa aaaaattcct atccactgaa aaatttacat
     2761 gattttcgct atatgctaga tgaagaaaaa gggcatattt taaaaatttt taattcaaac
     2821 ttagactctt taatcaattt tggcataaaa aaggatcgtt ttgataccat taaagagggt
     2881 atatttattt ttttaaagat tgcggaaaaa ataaaagcca aacaagttat cacgagtggg
     2941 gttggaatca gagaaggagt ttatttgcaa gatttacttc gtcctaaaat cacttttcca
     3001 ccaaatttta atcctagttt aaaatgttta caagataaat ttttacaatc aaaacaaaaa
     3061 aataaaactc cacattttgc tctgcaaatt tttacaaccc ttaaaaatct tcataaactt
     3121 aacgataact ataagcatac tttactaaat gctgctaaat tatgccatat tggagaatat
     3181 ttaaatttct attttgctaa tgaacactct gctcattttg tactaggtgg attaaattat
     3241 ggattttcac ataaagaaaa agctttaatt gctagcatta ttaagcttaa tggaaaaaaa
     3301 gttaaccctt ataatcttga accctataaa caacttttac ccaatattca taccatttca
     3361 tggcttaatt ttattttgtg cctagctaaa actttaagca caaatgaaga taagattgat
     3421 tttgcttttg caaacaatac tctttatata tatcaagaaa acaaaattct taatttaccc
     3481 aaagatgagc tcaaaaaaat tgcaaaacca gctaccatag cattagcaat caatcaaaaa
     3541 atttaagatt ttttaccttt ttgacgctgc tctataagat tttgaattct ttttttattc
     3601 tcttcaaaaa aagaatcaaa atttttctct gttttttctg tatgttttat tatttgttcc
     3661 tctggaattt caacactttc taaaagcaca ttggaattac ctattatcat tgtataacgt
     3721 ttattagcgt gatcaaaaac aacaagttga ttatttttat ctaaaaatct ttggaaaatc
     3781 atagtaaaat ctctagaaac attgttattt ttataaacca tagtcttttt aaaccaccaa
     3841 agcactatta acaaaataac taaaatcagc attactaaga tataatttgt ataatcatac
     3901 ccttctaaac ttgtactttt tggtttaggc attaattctt gagaattatt cgcagtagtt
     3961 gtaggtacag attcgatatt tgcttttcct tgctctatag ctcgtatcct tactccaaat
     4021 ttatcattga tagagctaag ttctaaatta atattttgtt tgttttgtag cataatatag
     4081 gtattattat ttttagaact aatactaatt ttatctacaa gttgagagtt aagttctttt
     4141 aattcatctt tagaatacgt taaatcacta aaagttaaaa gagttaaatt tttttctttt
     4201 ttttgagaaa tcttgccatt ataggcatta tcaaaagaaa gcattaaatc tactcgatca
     4261 tttctatcgt agatattaaa actaatcagc tcaacactat ataaaggtaa aattaaaaaa
     4321 aataatacta gcaatctcat ttaaatttct tttttaaagt attgaagcac agtcttagaa
     4381 tccaaaattt cattaattct tatagcgaga tttttttcat aaaccataac ctcgcctttg
     4441 ccaaaaattc ttttattgat ataaagctca acgctttctc cagcaggctt ttcaagatca
     4501 ataaccgaac ctacttcaag ttttaaaagc tccgctacac tcatatttgt agttccaagc
     4561 tcgcttacaa aatctactgt aatatctaag atatcttcat aagattgtaa aagcccatga
     4621 tgaatgttaa actctatatc atcgctcatt atttgcaata tcctattcta aaataacaat
     4681 tttcaaattt ataagttaaa gcttcatcta gaactatttc agaaaaatca acttttccta
     4741 aatattccgg aattccgagt ttatactcgt catcaccctt ggcatcattt aacaaatttt
     4801 tagcataacc tataatctga ttggcacatt ctttagttaa atcgcaccag tcatcttctt
     4861 taaatttttc atcattaatt aaaatttctg caattttttt taaaaattct tttggaaaaa
     4921 ataaataaaa attacattct ccttcgcttt tgcccatgat aggaatactc gctccataaa
     4981 gttcaccgct tatatcttga gctgcttcaa tgcgaagtct taagatatgc tcgcaaaaat
     5041 gagtgatgga atactcaaga atctttaaca tagctaccac ctttataaaa aacttaattt
     5101 aaaattatag taaatataaa ataaaaatat gttttaaaat tttatttttt gaaaatttct
     5161 tcaatatctt tcattattat atccaaattt ccttgtttaa aacactttac tatgctagtt
     5221 cccacaatca ctccatcagc aacttttctc attcttttta catcttgatt attttgaatg
     5281 ccaaagccta caaaaatagg caaatttgta aaagatctga tttcttttac tttatcttgt
     5341 aagattgctt cttcgacact tttcgtacct gtaataccta tgcttgctaa taaataaata
     5401 aaacctttag catgttttac taacttttta accctttctt taggggttgt aacacttaca
     5461 agtgtaatta aagctatatt atatctttca cactctttaa ttaaatcatc actttcttca
     5521 aaactcaatt caggcacaat caaagcacaa atccctaaag attttgcttt tttcacaaat
     5581 ttttccaagc cataagaaaa aattaaatta taataaacca taaaaaccaa agctttttta
     5641 gtttttatcc tagctaaaag ctcaaaaaca ctatgaatat ccacgccttg atcaagagct
     5701 atttttgccg catctgcaat aatctcacca tcggcaatag gatcactata agcaacacca
     5761 agttctaaaa tatcaatagg gctttgatcc aatctttgca aaaaagcttc acttgtttga
     5821 agatttggat aacctaaaac cgtataagcc acatttgcat tttctttata aaattttcta
     5881 aaatcaacca taaatcaccc cttttttata atctctaatc atttgcatat ctttatctcc
     5941 cctgcctgaa agatttacta ctatcacgct tttctttttt aaagttggac aaagtttttc
     6001 taaaaatgcc aaagcatgcg aactttcaat cgctgcaata ataccttctt ctttacaaag
     6061 taattttaaa gcctgcatac attcttcatc acttatagca tgatattgcg ctcttttgct
     6121 ttcaaataaa aaagcatgca aaggaccaat tcctggataa tcaagccctg cagaaacact
     6181 atgtacaggc aagatattgc ctaaatcatc ttgtaaaacc ttggttttca taccgtgaat
     6241 aatgcctgtt tttcccttat ttaaagtcgc tgcatgataa ggcgtatcaa tgccaagccc
     6301 ccctgcttca atacctataa gtttaacatt ttcatctttg ataaaatcat aaaaaatccc
     6361 agctgcattg cttccacccc caacagctgc gataatataa tctacttttt tattgagttt
     6421 ttgaagttgc attttgcatt cttttcctat aatactttga aaatgcatta ccattttagg
     6481 ataaggataa ggacctaccg cacttccaac cacataaaaa atatttttaa tatctccaac
     6541 ccaagcttga atagccgcag tagtagcttc ttttagagtt ttaagcccac tttgtactgc
     6601 atgaatttta gcacccaaaa gctccatttt ataaacattt aaagcctgtc tttgcacatc
     6661 ggttgccccc atataaattt cacattcaag tcctaaaagt gctgctgcag tggctgttgc
     6721 aagcccgtgt tgacctgctc ctgtttctgc tatgattttt ttctttccca ttttttttgc
     6781 taaaagggct tgagcgatgg cattattgat tttatgtgct ccggtatgat ttaaatcctc
     6841 gcgttttaaa taaatttcat gctgatattt tttgcttaaa tttctagcaa aataaagtgg
     6901 agtaggacgc cctacataag tttttaaaag ctcgtttaat tcttttttaa agagtttatc
     6961 tttagaaaat ttcaaaaaag caccttctag ctcatttaaa gcaaacattg cactttcagg
     7021 caaaaactgc ccaccaaaat ccccataata cgcttttttc attttttcaa ctcctttaaa
     7081 atttgtttta ttttgttgat atcttttaag cctttttcat cttcaagttt tgaattaaga
     7141 tctaaaattt tagctcccgt ttgtacagcc ttatgaacat tatccaaacc tatgcctcca
     7201 gctaatataa aatctttagt ataagaacct aataaagtcc aatcaaaact tattccatta
     7261 ccgcccttta aaattccctt agcatcaaaa agtactaaat tagcaaaaat ttcacttttt
     7321 aaatctaaac tattttccac gctaatcacc tgccaaacaa aaacattttg cacctttaaa
     7381 atttcaaatt cttctttggt aatagtgcga taaatttgta tcccatcaag cttagcttct
     7441 ttaatacatc ttaaaatttg ttccaaattt tcatctacaa aaacaccgac aactttttta
     7501 tctttttcat gaaaaattgc acttaaattt cttgcttgtt ctaaactcac tcttcttgga
     7561 cttttagcaa aaataaatcc aaaaaaatca atatttaaaa aagctaaatc tttggcattt
     7621 ttttcatctt taataccaca aattttaagc tttagcataa gcttgatact ccttaaaata
     7681 ttctataacc ttacctgaat aaatggcttc taaaatcata tctttagcca ctaaaggcga
     7741 acttgcttta ttggctgtat aaagtgcaaa catagcattt aaaactacca aatcaaattt
     7801 tgccccttgc attctaccgc ttaaaatatc ttttaaatct ttagcgttgt catatgcact
     7861 agatcctatg atttcactat gaaaagctct tttaaaacca aattgttcag gacagataga
     7921 atactctaaa atttctcctt cacaaagctc ataaatttta ctttcatcgc aaatactaag
     7981 ctcatccata ccatcatttc ctcttaccac taaagctttt ttgcgtccta aattttttaa
     8041 aacctctatc aaaagcctat gcacaggtgc gtgataattt cccataagtt gatattttaa
     8101 ctttaaatta gggtgcaata aaggacctaa aacattaaaa accgttctta ctccaagtct
     8161 tgatctgatc tctttaagtt ctcctactaa aggatgaaaa aatggagcat gtaaaaaact
     8221 aagcccttga ttatttagtt gttttaaaac tgattctaaa gtatttggag tagttatact
     8281 taaagcttct aacacatctg tacttccact agaacttgaa atggcacgat ttccgtgttt
     8341 ggctactttt actcctaaag ctgctaaaat aaaagcacta gtcgtagaaa cattgatact
     8401 tttaaaacca tctccacccg ttccacaaat atcaatcatc tcactctcat cactaaaagt
     8461 ttgagaatat cttaaaattt gtcttacaaa agcacttaaa gatttttcgt ttaaagactt
     8521 ttcagtgatt aaaatcaaca aagccgccac ttgcaaaatt tcataatctt tagacataat
     8581 aatcttacaa atttgctcaa aatcatcgct ttgtaaaaaa tgattttcac tcattttttg
     8641 caaataaaaa cttaaaggat tttcttgttt ttgtgatttt tttatatctt gttttaaaaa
     8701 attagaaaaa agttgtaagc catattcact aaaatagctt tcaggatgaa attgcacacc
     8761 ataataaggt aaatttttat gtcccaaagc cataatcaca cccttttcat caagggctaa
     8821 aatttcaagc tcatcactaa gctgtttaac ctctaaagaa tgataacgca tcacgctaaa
     8881 atttaaaggt aaattagaaa ataattcatt ttccctgcac tgttttatca aagaattttt
     8941 tgcatgcata ggctcttgca tcttaaccac taaagaatca aaagctaaag ctaaagcttg
     9001 atgtcctaag caaatgccca aaacagggat attaagcctt gctttaaaaa tttcaagaca
     9061 aatcccactt tgacttggat gctttggacc aggacttaaa ataatatgag taggatttaa
     9121 atttttaatt tcactcagag aaatttcatc atttcttctt actaaaattt catcattgct
     9181 gagttgctct aacatgcttt taacattaaa aacaaaagaa tcataattat caattaaaag
     9241 tatcattgat tttccttttt taaattttca aaagctacca aaagcgccct acgtttagca
     9301 caaatttctg catattcttt ttgactctca ctttgcaaaa caatacccgc cccacttgcc
     9361 aaataagcct tatcttgagt aaaaaaagcg caacgaatta aaatcgctaa agttatgtct
     9421 tcgttaaaat ttaaaaatcc taccgcacca ccataaactc cacgatcgca atcctcaagc
     9481 tcactaatga tctctaaagc tcttatttta ggagctccgc ttaaagttcc cgctggaaaa
     9541 actgcctcaa tcacatcgaa aatactcgca tcttctttca tattggcata cacttcactc
     9601 actatgtgca ttacaaattt atttttaata atagaaaaaa gattttccac tcttgtttga
     9661 gtgccaaatt tagaagcatc atttcttgcc aaatctacaa gcatcttatg ttcactaagt
     9721 tctttttcat cacttaaaag atctttttct aaagctaaaa gatcacagtt attttccaaa
     9781 tttctagttc ctgcaatagg ggctaaataa atctctcttt ttttaatttt taataaaaac
     9841 tctggagaag aacccaaaac aacaccatat ttgcttggaa aataaaacat ataagcactt
     9901 ggatttaaag tacttaaact ctcataatag tcaaaagcat ttacttgatg cttgatgcaa
     9961 agttgcttac ttaagaccac ttgaaaaata tctccactta aaagatattc tttagctttt
    10021 tcacacattt ttaaaaaatc atttttctca tcttctaaag agtttaaaat ttcaaaatca
    10081 tttttttgtt tcgtttttat tggctcaata tcatctttta aatattcaaa atattttgaa
    10141 gcgccaaatt taaaaaacat tttgctattt ttctcataaa tcaaataagc tttagcattg
    10201 gcaaataaaa ataaaggaaa atcataattt ttcttagaag aaagtggaat tttttcaaac
    10261 aaagatacaa aattcgcact aaaaactcca aaaaatccag caaagtcaca aattttattc
    10321 ttgcttaaag cttcataata ttttgcctta aactcgctaa atgataattc attagcatct
    10381 aaataatcac aatcaatccc tataattacc ttagtcaaat cctctgcaaa ataagaattt
    10441 tcaaattttt caaggatttg tctgtaataa
//
LOCUS       DAZAND010000065        10417 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.065, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000065 DAZAND010000000
VERSION     DAZAND010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10417
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.065"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..281
                     /locus_tag="ACHDOB_001240"
     CDS             <1..281
                     /locus_tag="ACHDOB_001240"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HFN3326163.1"
                     /translation="FTFYLKKWSKKTGLFYTHLSIKNMKTRWGSCNHNKAYINLNLKL
                     IQKSLRAIEYVILHEISHLKFPNHSKEFYTFIEHFMSDFRQREKEFLS"
     gene            323..1843
                     /locus_tag="ACHDOB_001241"
     CDS             323..1843
                     /locus_tag="ACHDOB_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326164.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNFMSHSVFLKKFDVKAGHGFNPCMPEDKEFSRFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNL
                     DFNDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKKDKNMARISYLVSRYKEKAFILELSKDDEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFSKEFPLLDENFELQNNFYSLFGLIGRVLNLGKNL
                     QESASELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRV"
     gene            1824..4010
                     /gene="hypF"
                     /locus_tag="ACHDOB_001242"
     CDS             1824..4010
                     /gene="hypF"
                     /locus_tag="ACHDOB_001242"
                     /EC_number="6.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003998 - acylphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0016743 - carboxyl- or
                     carbamoyltransferase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HFN3326165.1"
                     /translation="MYHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGVE
                     IILACTQKECENFIENLKNHLPPLARIDKLIITQISISNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRVHTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILVKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLCQKLDGVFDFYLDYDREIINASDDSIVQVVNGKTMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPNFSYAKEFEERIKISHHYAHFCAVYFEYEENFSKDEKALAFICDGTGY
                     GEDGKIWGGEVFIGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKEF
                     LAKIPKIKLENLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLKKE"
     gene            4083..4826
                     /gene="hypB"
                     /locus_tag="ACHDOB_001243"
     CDS             4083..4826
                     /gene="hypB"
                     /locus_tag="ACHDOB_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0051604 - protein maturation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HFN3326166.1"
                     /translation="MCKDCGCSINSSHTHDHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLVIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDVKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            4826..5107
                     /gene="hypC"
                     /locus_tag="ACHDOB_001244"
     CDS             4826..5107
                     /gene="hypC"
                     /locus_tag="ACHDOB_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HFN3326167.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            5091..6182
                     /gene="hypD"
                     /locus_tag="ACHDOB_001245"
     CDS             5091..6182
                     /gene="hypD"
                     /locus_tag="ACHDOB_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HFN3326168.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNV"
     gene            6179..7153
                     /gene="hypE"
                     /locus_tag="ACHDOB_001246"
     CDS             6179..7153
                     /gene="hypE"
                     /locus_tag="ACHDOB_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HFN3326169.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEADVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDELKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            7153..7497
                     /gene="hypA"
                     /locus_tag="ACHDOB_001247"
     CDS             7153..7497
                     /gene="hypA"
                     /locus_tag="ACHDOB_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008901 - ferredoxin hydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HFN3326170.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEADLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDKTSILEENVFKCPKCQSIEYKITQ
                     GEDLHLMRLVME"
     gene            complement(7499..8464)
                     /gene="holA"
                     /locus_tag="ACHDOB_001248"
     CDS             complement(7499..8464)
                     /gene="holA"
                     /locus_tag="ACHDOB_001248"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HFN3326171.1"
                     /translation="MYRKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKILVELCKNNTDNFF
                     LLELYDENSKQSDIEKIFSPHFARFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKSEYELKTNSKLVKKEFLISNLLKLARILKN"
     gene            complement(8457..10391)
                     /locus_tag="ACHDOB_001249"
     CDS             complement(8457..10391)
                     /locus_tag="ACHDOB_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HFN3326172.1"
                     /translation="MKEFLNSLSYGISPHEASNEFKQILRELLASHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDIQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPRPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADARKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALSDELNLRAEVDKLIIKAQKKAEYSSINAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
BASE COUNT         3541 a         1344 c         1882 g         3650 t
ORIGIN      
        1 tttttacttt ttatcttaaa aaatggagta aaaaaacagg cttattttac acgcatttaa
       61 gcattaaaaa tatgaaaacg cgttggggtt cttgcaatca caataaagct tatattaatt
      121 taaatttaaa actcattcaa aagagtttaa gagctattga atatgtgatt ttgcatgaaa
      181 ttagccattt aaaatttccc aatcatagca aagaatttta tacttttata gagcatttta
      241 tgagtgattt taggcaaaga gagaaagaat ttttaagtta aaaatgttat atttatagtt
      301 tatttttcaa aaaaggcata atatgacttt ggattttgat tttatttata atgcagataa
      361 tgatattttt gaatatttat tgcgttttta tgcgaaaaat tacaattata tccttagtaa
      421 agaagaaaat acttatcatt tttctatcga tgcagatgaa gaaaatttaa agactttttg
      481 cgattctttg aatttcatga gtcatagcgt ttttttgaaa aaatttgatg taaaagcggg
      541 gcatggtttt aacccttgta tgccagagga taaagaattt tcaagatttt cttatattac
      601 tcatttaaat tctaatgcgt atcaagaaaa aaaactttta aacaaaaacg aatggggcgt
      661 gttttgtgag tgtgaatttt caagcaattt atcagaattt gaaaaaatca atgaagaaaa
      721 tttcaatact tttttaaatc ttgcttttga tttgttaagt caagaaaaaa agatttattt
      781 aaaagataaa aatggtattt atgaattttc tttgtttaag aacgaattta taggagattt
      841 tttgcttcct tgtgatatta aggctataaa ttcagttttt gtttgttcaa atgaaaattt
      901 aaaacttctt gcaagtttgg aaaaaccttt gatgaagcta aggcttaatg ctatgtttag
      961 aaaaaatcac aatcttgatt ttaatgattt taaaatcaga cttgctaggg atttgttttg
     1021 ttttgcttta ggtttaaaac tttttgaaaa tgaatataaa tttttaagcg taaaaaagat
     1081 agaagaatat caaaaagatt tttatatcag tgctttagat gagcaagtgg tggttttgga
     1141 aggctttgaa tttatcaatg ccaaggcaag agagcttatt ttttctaaaa aagataaaaa
     1201 tatggcaaga atttcttatc ttgtaagccg ttataaagaa aaggctttta ttttagaact
     1261 aagtaaagat gatgaagata ttttgcttat caacaaagag cttaatttgc ttaaactttg
     1321 cttaccaaaa cacagcaaag agctttatga agagattaaa aaagatgaaa ttggtgcaag
     1381 gcttttagaa aattttagca aggaatttcc tcttttagat gaaaattttg agcttcaaaa
     1441 caatttttat tccttgtttg gcttaatagg aagagtgcta aatttgggta aaaatttaca
     1501 agagagtgct agtgagcttt taaaaatcgc tgatgagtca aaaatgcctc gtggagtaaa
     1561 gattgattat cgtttgaaag aagataaaag ttttgattat acaagaactt taagatctgc
     1621 tatgagtttt atgttagcag gtgtggatag tgctaatata gcttatggag cggttgagag
     1681 tttggcttat ttcttacgtg atacttatga tgaattaaga gagaaaaagc aaagtgattt
     1741 agcacttata agtggatctt tgtttgagca taaatctttg cttaaaaata ctttaaaaca
     1801 tcttaaaaat tgtcagctaa gcgatgtacc acttagggta taagatcaaa atttcaggct
     1861 tagttcaagg ggtgggtttt cgtcccctag tttatgaact agctttaaaa tcaaagcttt
     1921 ttggagaggt aagaaatgat ggttttgggg tagaaatcat ccttgcttgc actcaaaaag
     1981 aatgtgaaaa tttcatagaa aatttaaaaa atcatctccc gcctttagca agaatagata
     2041 agcttataat cacgcaaatt tctatttcaa actatgagaa ttttagcatt actccttctt
     2101 tagagaatac aaaaagcacg cctatgttga gtgattttgc gctttgtaag gagtgtaaaa
     2161 aagaattttt tgatgaaaaa aatccacgct ttttgtatcc ttttatcact tgcacacatt
     2221 gtgggccacg ctttagtatt ataaaaagtc ttccttatga tagagtccat acttctatgc
     2281 aagaattatt gatgtgtgag ttttgcaaaa gtgaatacga agatcctaaa aataggcgtt
     2341 ttcatgccca gcccattagt tgtcctaagt gtaaaatcaa tgtttttctt aaaaatccaa
     2401 agggtgaaat tttagtcaaa gatcaagaag cttttataca aagtgcgaag tttttaaagg
     2461 aaggtaaaat tttagccatt aaaggcatgg gcggttttca tctcatgtgt gatgctttta
     2521 atgaagaagc tttaaaaact ctaagactta gaaaaaatcg ccctaaaaaa ccctttgctt
     2581 tgatgtgtaa agatttacaa agtgctaaag aacttgcctt tatagatgaa aaagaagaag
     2641 ctttgcttgg tggggtttta gctcctattg tgattttaaa ggcaaaaaaa gccttttctt
     2701 taatcgctcc tgatgttgat aaaatcggta ttatgttagc ttatacgcct ttacatcttt
     2761 tgctttttga gtattttaaa ggaagccttg tggcaacaag tgcaaattta agtggagaaa
     2821 gtatcattaa ggatgagttt aatttgtgtc aaaaacttga tggagttttt gatttttatt
     2881 tagattatga tagagaaatt atcaatgcaa gtgatgatag catagttcaa gtggtaaatg
     2941 gtaaaactat gtttttgcgt acttcaaggg gtttaaatcc tttttatttg gaaagaaatt
     3001 ttaataaaaa aggcactttt ttagctttgg gtgcggagct taaaaatgaa tttgtgattt
     3061 tttatgaaaa taaactttta atttctcctt atatagggga tttgaaaagt cttgatgtgc
     3121 atgagagatt ttttaaactt ttagaatttt ttaaacaaaa ttatgatttg aaatttgatg
     3181 cgattttgtg cgataaacac ccgaatttta gctatgcaaa agaatttgaa gaaaggatta
     3241 aaatttctca tcattatgcg catttttgtg cggtttattt tgaatatgaa gaaaattttt
     3301 caaaagatga aaaggcttta gcttttattt gtgatggaac aggctatgga gaagatggta
     3361 aaatttgggg tggagaagtt tttataggaa atttaaaaga atatgaaaga attgcacatt
     3421 ttgaaaattt cactcttata aatagtgata ttaaaaatat acaaaattta gctctaagtc
     3481 ttatttttca ttatgattta gaagataagg ctaaggagtt tttagcaaaa attccaaaaa
     3541 tcaaacttga aaaccttaaa aaaatttatt ctcattctaa cttgcaaacg agttctttag
     3601 gacgcattat cgatgctttt ggaagtattg tttttaactt agaaaaaagt tcttatgaag
     3661 ctcaagttgg cttaatgtgt gaggcttttt atgataaaaa tcttgatttt tcttacaagc
     3721 tttttgtaga aaaagggcag gttaatttta aaaatttaat cctaggggct ttacaagatg
     3781 aaaaaactaa ggcaattaca ggtatgttta atgccttggc aaattttatc atagatttta
     3841 gcaaagatta tgatttaaaa gtgcttttaa gtggaggagt ttttcaaaac aaaaccttac
     3901 ttgaaatttt aaaagctaaa aattttgatt tttttatacc tttaaaatac ccttgcaatg
     3961 atagctccat agctttagga caaatggtgc attttttaaa aaaagagtga ttttatcttt
     4021 aaactcataa ttttttaatg cttttaaggt taaaatgaaa caaaaaatat aaaggaaaga
     4081 aaatgtgtaa agattgcggc tgctctataa attcaagcca tacgcatgat catcatcacg
     4141 atcaccacca tgaaaatcca agtttaaaag aaagtaaaac catagaagta atttctaaaa
     4201 ttttaagcaa aaacgatgaa gaagctaaac acaatagagc gcattttaat gaggctaaca
     4261 cgctttgtat caatttaatg agttctccag gtagcggaaa aaccacgctt ttagaaagca
     4321 cgatcaaggc tttgaaaaat gaacttaaaa ttgctgtgat tgaaggggat ttagaaacca
     4381 ataatgacgc cctaagagta aaaaatgccg gagctttggc gtatcaaatc actacagggc
     4441 aaagctgtca tttggatgct tttatggtgc atgaggcttt gcatcattta gtcattgatg
     4501 atgtggattt gctttttata gaaaatgttg gaaatttggt ttgtcctgca agttatgatt
     4561 taggagagca tttaaatgtg gttttgcttt cagtaaccga aggaagtgat aaaccgcaaa
     4621 aataccctgt gatgtttaaa aaggctgata tagttttaat cacaaaggca gatttggctc
     4681 atcattttga ttttgatgtt aaagaggcga ctaggttgat taaagaatta aatcctagag
     4741 cagatattat cactcttgat gcaaaaaatg gcaccaatat ggagctttgg tataaggtgc
     4801 ttaaacttaa aaaggagctt ttttaatgtg tttgtctata ccttctgaaa ttttagaaat
     4861 cgatgagtta aacaatgctt tagtgcaaac tttaggtgtg aaaagaaaag ttaatttgga
     4921 tttgattgat gagcctttaa aacaaggcga ttatgtgtta atccatgtag gcgttgctat
     4981 ggaaaaaatc gacaaagaag ctgcactaga aagcattaaa acctatcaag aaatagtaga
     5041 aaaaatgaat agtggagaga taaaaagtga tgaaggagat ttgggtttaa atgaatttca
     5101 tcgatgaatt tagagataaa gaaagcattt tagctttaaa aaaactcata gaacaagaac
     5161 ttaaaaatcc tatcaatatc atggaaattt gcggtgggca tacgcatagt attatgaaat
     5221 atgccctacc ttctattttg ccaaaggaaa ttaactttat ccatgggcca ggatgtcctg
     5281 tttgtgttat gccaagagtt cgcattgata cagctatcaa gttagcctcc atgaaagata
     5341 cgattttttg tactttagga gatcttttaa gggtgcctgg aagtgaaatt tctctgcttg
     5401 atttaagagc taaaggggct gatgttagag cgctttattc tccacttgag gttttggaaa
     5461 tcgctaagca aaatttaaac aaaaatatca tcttttttgc tataggtttt gaaactacta
     5521 cgcctatgag tgctttactt cttcaaaagg ttatagaaga aaaaataaat aatgtctttt
     5581 ttcatatcaa tcatatcaca gttccagcgc ctgtagaagc gatcatgaat gatgaaaatg
     5641 taaaaatcaa tgctttttta ggcccttctc atgtgagtgt gattacaggt tatggtattt
     5701 atgagccttt agcagcaaag tttaaaaccc ctatagcggt gagtggtttt gagccagttg
     5761 atattttaga aagtgtgtta aatatcataa aacaaagcaa tgaaggcact tttaaagtgt
     5821 ataatcaata caaaagagcc gtaagtaaag aaggtaatgt taaagcacaa aatttagtaa
     5881 aaaaatactt tagggtgtgt gattttgaat ttcgtggctt agggcttatt aaagatgggg
     5941 gcttggaact aaaagaagaa tttagtgctt atgatgcgag taaaaaattt gattgtacgg
     6001 tgcaaagtaa aaatgaaagc aaagcctgta tttgtgggca aattttaaga ggtttggcca
     6061 agccttatga ttgtaaagtt tttggtaagg cttgtacgcc aagaagtcct ataggaagtt
     6121 gtatggtttc tggcgagggt gcttgtgcgg cgtattataa atactcaaag gtgaatgtat
     6181 gaaaaatatt tccttagccc acggaggtgg cggagaagag atgaacgagc ttttaactaa
     6241 gctttttaag atctttgata atgaaatttt aaatgcaaat aatgatgcag cgattttagg
     6301 aaatttggct ttaagcacag attcttttgt tttaagtccg atttttttag atgaagaggt
     6361 taatatagga aaactttgtg tttgtggttc tattaacgat gttttgatgg taggtgctaa
     6421 gccaaaatat ctaagtttag ggcttatctt agaagaaggt tttgagctag aaaaactaga
     6481 acgcatttta aaaagcatta aagaagaatg tgaaaaatgc ggagttatgt tagtttgtgg
     6541 cgatactaaa gttgttccta agggcaaagc agatgaaatt tatatcaaca ctacggcctt
     6601 aggtgaaatt atttctaaaa aagaaagtaa aaatatcaaa gcagggctta gcatacttct
     6661 ttcaggtgat ataggaaggc atggagctag tgttttaatc aaaagaaatg agttagaagc
     6721 tgatgttaaa agtgattgta aggctttgga taaagaggtt ttagagcttt tagaaaaaga
     6781 tataaaggtt gtagcaatga gagatgctac tcgtgggggg cttagtgcgg ttttaaatga
     6841 gtgggcaaag caaagcggaa atgatctttt gatctttgaa gaaaaaatca tcgttcaaga
     6901 tgaggtttta ggactttgcg agctttttgg ttatgaagct tatgaacttg caaatgaagg
     6961 cacttttata ctttgtgtgg aaaaagaaga tgagttaaaa gccttggaaa ttctaaaaaa
     7021 atacaatgta aatgcgagta ttataggaga agttttagaa gagaaaaaag cacgcgtgat
     7081 cttacaaaac gcttatgggg caaaacgctt tttagaaagc cctaaaggcg aacttttacc
     7141 aagaatttgt taatgcacga attaagtata gtagaatctt taatcgaact ttgtgaagaa
     7201 aatgccttaa acaataaggc ttgtaatgta caagaaattt atgtaaaaat cgggcgttta
     7261 agcggtatag aagcggatct ttttaagcgt tgttttgaaa cttttaaaga aaactcaaat
     7321 atttgtaaaa atgctaaact ttttatagaa cttgctccgc ttgaaatttt atgcttaaaa
     7381 tgcgataaaa caagtatttt agaagaaaat gtttttaagt gtcctaaatg tcaaagtata
     7441 gaatataaaa tcacacaagg tgaggactta caccttatgc gacttgtgat ggagtgagtt
     7501 agtttttcaa aatccttgca agtttaagca aatttgaaat taaaaattct ttttttacga
     7561 gcttagaatt ggttttaagc tcgtattcgc ttttaagtaa aagagtgaaa atttctttat
     7621 attgttcgat ttttaaacta aaggcttgag agcttaaatt ttgtcccact tgaggaggtg
     7681 gagtatagcc taaaagatct ttaaagtcaa ttttaccatt gactttagca taaagtgcga
     7741 ttttaaataa acgataaaaa gaattatata aagagttgat taaagcaatt tcattaaaat
     7801 tgtctaaaat tttttcaagt tcgcttttaa agtcttgttt ttttaaaatt ttctcaaaaa
     7861 agctttcaaa acttcctgta ttcaaactat agcagtattg ttctatggtt ttttcatcta
     7921 ctcttaaacc gctaaattta ttaagttcac tcgcagcaag atataaattt tcatcaaaac
     7981 ttgtaaaaag ggtaaataaa gcattttgag tgatttcaac ccctagttgt tttgctttta
     8041 tgcttaaaag ctccacgcct tctttagctc cgttagcttt aaaaaatctt gcaaaatgag
     8101 gagagaaaat tttttctatg tcgctttgct ttgagttttc atcataaagc tctaaaagaa
     8161 agaaattgtc cgtattgttt ttgcaaagtt cgactaaaat tttaagatct tttgttggaa
     8221 tttttttaga agttttgatt tctagtaatt ttttttcgct aaaaagcgat cctgcgctta
     8281 aaaaatcact cgcacgagtg aagttgtatt cttcaaaaaa aagttttaaa gtttcatcgg
     8341 gcttatattt ttcttttata aattcagcat aaagttcgct ttgaaaatta tccgctccat
     8401 aaagaaagaa aaaattaggt attgaatctt tagaaagtag ggtttgaagc tcttttctat
     8461 acattttctt cctttatgag tctttgggtg attttagcat aaatttttgc cataactata
     8521 tccgcttcca tgatttgcac ttcaacattt tctagtaaat ttacacgtgt atcataaagg
     8581 attatatctg ctcctttgat ttcatcatct agtttagcta tgcaaactcc atcattttgc
     8641 acaactaaag ctttaaattt tttgcctata tttttagctg cccatctagc aaattttcta
     8701 tccataaaat caaaagcaac cttatccgcc tctctttcaa gtgtgctaag attctcgcaa
     8761 gtgctttcta tgtttaaaag tagataatta aaaagttttt catcgttttt ttgtttggct
     8821 tttaaaagtc tgtgtaaaat aagatcagaa taccttctta tagggcttgt aaaatgtgag
     8881 tatttatcaa aacctaagcc aaaatgcccc gcatttatgc tagagtattc cgcttttttt
     8941 tgtgctttga tgatgagttt atctacttct gctcttaaat ttaactcatc ggataaagct
     9001 tgtatgtcgc gtatgagttc aggaagattg ggtttaaaat ttacatcgat gcctagttcg
     9061 cgtaattcat ttaaaagctt atcgattttt cttgcatcag cacttaagtg atttctaaaa
     9121 acacctatat ctatgagttt tgctgcggct ttattagcta aaagcataca atcttcgatt
     9181 aaattatgcg aaggcgtgtc tttttcaaaa actgtgcttt ttagacttaa attttcatct
     9241 aaattcattc ttaattcttc ggtgcgaaat tcaaaggcat ttttaagacg cattttgcgt
     9301 aaattttttg tgatttcaaa aagctcataa agccatgaaa gctcttttaa atcaggtttt
     9361 tgtatcaaaa tttcatcaac ttcatcgtaa ttaaaacggc gttttgaatt gataatacct
     9421 tcaaaaagtt cttcttttat gactttattt tcatgatcga gtgtgatttt aaaacaatac
     9481 gctaagcgat ctaaatgagg ttttaaagaa cagatatttt cacttaaagg acgcggtagc
     9541 ataggtatag caatatgtgg aaaataaata gaaaatccac gatttcttgc ttctttatct
     9601 atagcactat aagcataaac atattcgcta acatcagcaa tagctacata aatttctcgt
     9661 ttttggatgt caaaataaat cgcatcatca aaatcttttg catgtatagg atctatggtg
     9721 caaaaaggca aggctcttaa atccatgcga ttttcataca tactcgcatc aacactatcg
     9781 ccgtttgcta gagcttcttt gatacaagcg tcgctaaatt cgttattttt attaaaaaga
     9841 gctaaggaga ttttttcatc tacgctttca tcatcgatat gtcctaaaac ttctatgata
     9901 ttgttatttt cattttctat ttttaaaatt gtccctaaag gtagtgcttt taaggatttt
     9961 tgagaagctt ttaaggcagt gcttaatcct gttttgatat tcattccaag cacggcttcg
    10021 ccgtaccttt tggtgattac taaagaggtt tcattggctc tttttagaac taaaatcacc
    10081 tttgcactag ggcgtttttt ctttaaaggt agaagtttta ctgcgactat atctttatag
    10141 tttgcacctt ttaggttttt gttttctatc aaaagatctt ttttgaaact ttcatcaaag
    10201 cattgtaaaa aacctgtgcc tttgcttgaa atatcaagca ctccaaaggc aaaaccatta
    10261 ttaagataat atttgttttt gtgttctttg atgatatgac tagctaaaag ctctcttaaa
    10321 atttgtttaa attcattgct tgcttcatga gggctaatgc cataactaag actgtttaaa
    10381 aattctttca cttttgatac tttatgattt tttgtaa
//
LOCUS       DAZAND010000066        10396 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.066, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000066 DAZAND010000000
VERSION     DAZAND010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10396
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.066"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(88..645)
                     /locus_tag="ACHDOB_001250"
     CDS             complement(88..645)
                     /locus_tag="ACHDOB_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HFN3326173.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPYS"
     gene            complement(642..1487)
                     /locus_tag="ACHDOB_001251"
     CDS             complement(642..1487)
                     /locus_tag="ACHDOB_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HFN3326174.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(1488..2612)
                     /locus_tag="ACHDOB_001252"
     CDS             complement(1488..2612)
                     /locus_tag="ACHDOB_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HFN3326175.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(2621..2932)
                     /locus_tag="ACHDOB_001253"
     CDS             complement(2621..2932)
                     /locus_tag="ACHDOB_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HFN3326176.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECEIHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(2947..3816)
                     /gene="sucD"
                     /locus_tag="ACHDOB_001254"
     CDS             complement(2947..3816)
                     /gene="sucD"
                     /locus_tag="ACHDOB_001254"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HFN3326177.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGITPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(3826..4989)
                     /gene="sucC"
                     /locus_tag="ACHDOB_001255"
     CDS             complement(3826..4989)
                     /gene="sucC"
                     /locus_tag="ACHDOB_001255"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HFN3326178.1"
                     /translation="MNIHEYQAKAIFADNGILTLKGKVAFSVDEAVSNAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITLIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKAILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(4990..5892)
                     /locus_tag="ACHDOB_001256"
     CDS             complement(4990..5892)
                     /locus_tag="ACHDOB_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HFN3326179.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSSVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFDDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMIESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSSQEKDKLEKSLIKYQYKGE"
     gene            complement(5889..8093)
                     /locus_tag="ACHDOB_001257"
     CDS             complement(5889..8093)
                     /locus_tag="ACHDOB_001257"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HFN3326180.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSECLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYSEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(8210..>10396)
                     /locus_tag="ACHDOB_001258"
     CDS             complement(8210..>10396)
                     /locus_tag="ACHDOB_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HFN3326181.1"
                     /translation="KLTLQRQNKELIADIKKLLLKDYDLNIDGNLSINTKSEFYYFQG
                     RASGELLDFNASISYKDKNLAYKIEDLNIRNITEIFKRVNKRIELPQSLNLWVAYRAK
                     GEFYHLDYLQGFIDFTKDNYYLDNISASGYVNNVKVRLDDKMNAIEIPKLDLNLNKQK
                     LDFVFNKAFYNGADLSSSKVYLYDLFDEKKVGIYLRIKSDNLKFDEKLAKALEDYHFS
                     LPFYQKSGKIKSDLELKIDFHDKGEISYSGILALENASISLADFNITKAFVKLNQNDL
                     NIENASVKNGFLEADFNAKFDLQKQQGNFNTQISRLYFDNGELLDLKNQNVEVKLDYS
                     QNVNISIPQWNLILNFKDGLEANLNNPKILFSFSPLLKKLGFINAKNVYYKTLNFEDF
                     NASVNDAYFKNNLLINGQTPYENDSFDIVKNKGIMEIHTQSDTASAKISSDNKEIHLK
                     NLSYIYRKHSNSSNSTFDIATNTQNISFGGANVALILADSNKTLAFDRVEADLKGNAL
                     DLKGSRGNAKFDLYYSSNDLNLNVSNIDDNYLNEFLQKQAVQDGVFNLSIKGSGLEYF
                     DGQIDFKNTYVKDLKGINQLISFIDTVPSLLMFKSPTFNQKGLSLHDGKIIFNRKKDL
                     LSVSAINLNGDSVDIYGLGSANLRLNTVDFSLELKTLKSASEAISKVPILNYVILGKN
                     QEISTNLKIDGSIDDPKFHTEILTDTLKTPFNLIKNIIQLPANLLN"
BASE COUNT         3287 a         2083 c         1297 g         3729 t
ORIGIN      
        1 agtagctaaa ttaaaataat taaaatttaa attttatttg caatgtgtaa aattttagaa
       61 gttaaattcc gcatgatgcg gaatttatta tgaatatggt tttgcttgag tggcgtattt
      121 tacacccaga tcaaaagctt tagcatttgc atcacgagtt tttgcaggaa ccatatgaag
      181 catagtttct tttaaaacat ctaaatctat acatttgctc atataagcag caattgcaag
      241 tgcaacaact gattgagtag ctacatttcc tacctcatct ttagctatgg tgataatagg
      301 gatttcaaaa atttgccatt ttttataatc ttcactttca ggatgtacta aatttggctc
      361 tacaactata atacctcctt cttttacacc cccacgaaaa cctttataac ccttatctgc
      421 agtcgaaagc ataaaatcta cttccccttc tacagcataa ggaaataaaa tttctttatc
      481 atcaatgata atatccacct tagtagggcc accacgcact tgtgaagtgt aagtagaagc
      541 cttaaaagct tgacgacctt ctttaatggc tgcttctgct aaaatttctc ctgcggtgat
      601 aacaccttgt ccgccttcac cgccaaatct taattgatat ttcattttaa agctcctaaa
      661 tccaccattc ttttttcttt ggctgcacga cgtacttctt cataagcgtg gcagtattct
      721 ggctgagaat tatcttcatg taaaattcct gttggaaatt tatcttttct ttcttcaaaa
      781 tccatgcttt caaatttagc tttatccaca acgcgatttt taatccaatc aagcatagct
      841 acagcttcgc ccattttgtt ttttctgcct agattgatat gacaatttga aaaaacatct
      901 acaaaactat aacccttatg cgctaaagcc ttataaatta aattttcaag cttattagct
      961 tcgatcacat taccccttgc cacaaaagaa gctcctgcag ctttagttaa ttcacacgca
     1021 tcaaaattag ggtcaatatt tccaaattga gctgttactg tataaaaacc ttttggagtg
     1081 gttgggcttg tttgggaatt cgtaagtcca tagatgaaat tattgattac aatatgtgtt
     1141 aaatcaatat ttctgcgaca accatgtata gtatgatttc caccaattgc caaagtatcc
     1201 ccatctccac ttactacaat aacatgttta ctaggattgg ctagtttaat gcctgttgca
     1261 taagctattg ctctaccatg agtagtatga actgtattac aatttacata agaactcatt
     1321 ctgccactac aacctatacc cgaaacaaga caaacatcat ccatattcca accaagtttt
     1381 tctatcgcgc ggataataca ttttaaaaca acaccatcgc cacatcccca acaccattga
     1441 gtaggcattt tatctactct tagatattca tcataattaa aagccattta tatattctcc
     1501 tttaccttag caataatttc acttggagtg ataggacgac catttgcacg gtgcaaacta
     1561 ataaaatcgc gacgcgaagt tactctttca atctcttcaa gatattgtcc catattaagc
     1621 tcgcttacca tgactttttt aaatttgctt acaacctcag caattttttt ctcagccact
     1681 ggataaagag taattggacg gaaaagtccc actttaatcc cttgctctct taatctttgt
     1741 atagcttctt ttgctgaacg actcacgctt ccataagcaa tgattaaaaa ttcagcatca
     1801 tcaagcatat actcttcata agtacaaata tcttcttgat tgttttttat tttacctatg
     1861 agtctttcca tatttttttt cactataact ccatcttcag ttggaaaacc tatatctcca
     1921 tgatgaagtc ctgtaacatg ataacgataa cctgtaaaga aaggatttaa agttgcaggc
     1981 tcattttctc ctgctgcata aggtttataa tcctttttat cgccttcaaa ttttttacgg
     2041 ttatatactt taatatcttt taaatcaggt aaaaccgctt taccattcat gtgccctaca
     2101 gtttcatcca taagtaaaaa tactggagtc atatattttt cagctaaatt aaacgctcta
     2161 atggtttctg tataagcttc ttcaagactt gcaggagcaa tagcaatact tgcaaaatcc
     2221 ccatgagttg gtgctttagc ttgaaacaaa tctccttgtg ctacacgagt tggaagacct
     2281 gttgaaggac cacctctcat aacatttaca atcacaagtg gaatttcagc aataaatgca
     2341 agtcctattt gctctgcttt taaagaaatt ccaggaccgc tacttgcagt catggatttt
     2401 accccactca ttgccgcacc aatagccacg ctaatacctg aaatttcatc ttccatttgt
     2461 ataaaagttc catcatttgc aggaagcata tggcttaatt catgagctat ctcactacta
     2521 ggagtaatag gataacctcc aaaaaattta catccacaat caatcgcagc tttggcgatt
     2581 aaaacattac ctgttgctat aacttctctc attatttttc ctatgctaat tttttgtatt
     2641 tgttattttt tacggctaca gctctatctt tagcctcagc agtaagtttg gcaaatttaa
     2701 attcatctct ttttgccacc ataatagcaa aatcagggca atgtatctca cactcggtac
     2761 agcctataca ggattcaggg tgtaccacct ctatcatttg tcctaaaacc gcatgcacat
     2821 catcgcgcat agctaaaacc ccagcggggc aatagctaac acaaatatta catgctttac
     2881 atctatgctc atctacccaa acaggggtat cttttggagc tgtcatactc atgttttttt
     2941 cctttattaa cctaatattt tttgaatttc ttcaccaatt aaagccggag aatccaccac
     3001 atgaattcca tagcttttta aagcttcttt tttagctgca gcactttcat cagcacttcc
     3061 tactatggca cctgcatgcc ccattctttt gcctttagga gcagttgcac ctgcaatgaa
     3121 tgctaccaca ggtttgctaa tattttcttt aataaattta gccgcttcca cttccaaact
     3181 accaccaatt tcacctatca ttacaatagc tttagtttca tcatcttttt ggaattcact
     3241 taaaagttct ttataagcaa gacctatgat aggatcacca ccaattccta ctgcagtaga
     3301 aattccataa ccaccttgaa ctacctgatt agcagcttca taagttaaag ttccactttt
     3361 tgaaataagc cccacgcaac cttttttaaa aataaaacct ggcataatac ctaacttaca
     3421 ttcttcagaa gtgataatac ctggacaatt tggtccaatg attttcatac cctttttatt
     3481 agcatattgc ttagcaaaca tcatatcctt tacaggcgta tgctcggtga ttacaactgc
     3541 aagcttaata cccgcatcag ctgcttcaat cacgctatca cctacagcaa aagcaggtac
     3601 aaagatcaag ctcacgtcag cctttgttgc tttaaccgca tctgcaacgg tatcaaaaac
     3661 tggtttacct aaatgagttt gtccaccttt atgaggagtg atgcctccga ctatatttgt
     3721 accataagcc atgcattgct cggcatgaaa agttgcttct ttgcctgtaa aaccttgaac
     3781 tattactttt gtatttttat taaccaatat actcattttc tatccttatc ctactaaact
     3841 ttttacaagc tctgcaccgt ttttaagatt ggttgctgct ttgatatttt taagatttga
     3901 attatccaaa attgcctttg cttccgctgc gttagtgcca tctagacgca ctacaattgg
     3961 aatatttacc tcaacattct tagtagcttc taaaattccg tttgctatcc tatcacaacg
     4021 aacaatacca ccaaagatat tgataaatat aacttttaca tttttatctc ttaaaatgat
     4081 ttcaaaagcc tttgcaacag tttcaggtga agctcctcca cctacatcta agaagtttgc
     4141 aggttttgca ccgctataat taataatatc catagttgcc attgctagac ccgcgccatt
     4201 taccatacaa gctacatctc catctaattt cacatagctt aagccaaatt cagccgcttc
     4261 tctttcagca ggattttctt cggtaatatc tctaagttca gcaatttcag gatgacgata
     4321 aagcgcacta tcatcaaaac tgcattttgc atcaagggca taaaaatccc cttctgcagt
     4381 tttaatcaaa ggattgattt caagcatatt catatcttta tccatataaa gcttataaag
     4441 tttagctatc atggaaatga gttttttacc ttcatcttta tcaagtccta aaactctcgc
     4501 tacttcaagt ccatgaaaca ttttaaaacc gatttgtgga tcaatgccta cttttgcaat
     4561 tttctcagga ctttctttgg ctactttttc tatatccatc cctccttcac ttgaagcgat
     4621 aagggtaatt tgctctgcca ttctattaaa taaaatagcc aaataatact cttttactat
     4681 attagcacca ctttctatat aaagtttttg cacgagcttg ccttcaggtc ctgtttgatg
     4741 agttactaaa ttcattccta aaattttact cgcgtaatct tttacctcat ctaaattctt
     4801 agcgatttta acaccaccac caagaccacg acctcctgcg tgaatttgag ctttaaccgc
     4861 ccaaacacta ccacctaatt ctttagcatt agacacagct tcatctacgc taaatgcgac
     4921 ttttcccttt aaagtaagga tgccattgtc cgcaaaaatt gcttttgctt gatactcatg
     4981 tatgttcatt tattctcctt tatattgata cttgattaaa gatttttcca atttgtcttt
     5041 ttcttgtgaa ctaagatcca ttttcatgat ttcaatcaca ccttcaagtc ctaatcttgc
     5101 catcactcct aaggctttgt tttgcacccc aaattctcca tgtaaaatca cactcatagg
     5161 taaaaactcg ccacttctta tagactcaat cattcttatg caagcactag caggagctaa
     5221 ataagctgaa gttttaagat gtttgattac tttagctcca cctgttttaa cttcattttc
     5281 caaatcatca aattcttctt catttaaaaa ttcgcttata tttttatttt taacactcgc
     5341 ataagatttt accaaaacca tatcatcatt atgaaaacca ataagtcttg tatctacact
     5401 tgacattttg acattaagtt ttttggcaag ctcgtattta aatcttgcat tatctaaaac
     5461 tcctgccatg gctataattt tctttgatga aaaaatcccg ctttcataaa gagtattaag
     5521 tagaaaatcc acaggattag ttaaaataat aaaaagcgga tcttctgtaa aatctttgat
     5581 tttcttagca caatcaagca taatgcttgt atttaactga agcaattctt ctctactttg
     5641 cccatctttt ctagcaaaac ctgcactaaa aagcactata tctgaatttt tggtatgagt
     5701 ataatcttta gtgcaaagta aatctatatt taaatttaaa gcagctatgc tttgagtaag
     5761 ctctagttct tttgcgtaaa gcaaatcctc gttaatatct actaaaacaa tttcatttgc
     5821 tatttctctt aaaatcaaag cataagctac gcttgaacct acattgccag cccctataac
     5881 agtgattttc atctttgtcc tattttttct aaaatagcgt taaaagttgc acttggacgc
     5941 atgattttat ttgctttttc atcatcaaat ttataatacc cacccaaatc cactttcaca
     6001 ccttgtgcat cgttaaattc ggctctgatt ttttcttcat tagaagaaag ctctagggca
     6061 atatctttaa aaaagctttg aagctccata tcacttgcct gtcttgctaa atgatttgca
     6121 aaatacattg ctaaataaaa atgacttgtt ctattatcat cttctttgac ttttcttgat
     6181 ggagctttat tattttcaag ccattcgcct atagcctcat caagacattc tgctaaaacc
     6241 ttagctttat gattgccaca cttatttgca taaaattcca aacttgcttg caaagccaaa
     6301 aattcaccca aactatccca acgcagatga ttttcttcga ctaattgttc tacttgttta
     6361 ggtgctgaac cccctgctcc tgtttcaaac atagctccac catttaacat aggcacaaca
     6421 gaaagcattt ttgcacttgt tccaagctct aaaataggaa aaagatcggt taaataatcc
     6481 cttaaaacat tacccgtgat agaaataaca tctttacctt ctcggattaa ctctaaactt
     6541 cttaaacaag cttcttttgg agttaaaatg gctacatttt tacccttttc ttttaaacga
     6601 ttttgtacca aagttatcat gattttatta ctagctcttt tgctatctaa ccaaaaaata
     6661 gcttcggctc cactaagttc tgatctttct atacctaaat caatccaatt taacactgca
     6721 tcaaatttag cctgattagc tctataaata tcaccttttc taaccttatg ttctaataaa
     6781 actttaccgt tagaaactat tttaaaagtt ccttcttctt tagccacaaa ggttttatcg
     6841 tgcgatccat attcttgagc ttttttagcc attaaaccta cattagatac actgccaagt
     6901 tttgaaggat ttaaagtacc atttttatgc aaatcttcaa taaccgcctc ataaatagtt
     6961 gcgtaagttt gatcaggaat tacggcattt gtgtcctttt ccttaccttc cttatcccac
     7021 aatcttgcgc catttttaag cattgcaggc atagaagcat caacgataac atcgcttgga
     7081 acatgaagat ttgtaatgcc tttatctgaa tttaccatag aaatatctgc agatttagct
     7141 aaaatttcac tgtatttttt taaaatttca tcttttttgc ttgaattttc gatcttactt
     7201 aaaagctcac ttaaaccatt atttggatta atgcctaatt tttcaaattc atcttgaaat
     7261 tcgataaata attctttaaa aaatactttt accgcataac caaaaagtat aggatcactt
     7321 actttcatca ttgtagcttt taaatgcaaa gaaaaaagca catcatcatc tttgcttgct
     7381 ttaatttctt ttgcataaaa ttcctgaagt ttttgcacat ccataaaagt agcgtctaaa
     7441 atttcatttt tttcaagttt taagccctct tttaaaattt cttttttacc atcaacgctt
     7501 gtaaattcta tattagccac acaatcttga tcgattaaaa ccgctttttc attagagaaa
     7561 aaatcccctt ctttcatgta agaaacacga gtttttgagt ttggattaaa ctcaaccaca
     7621 cgataaggat tgttttttgc atagtctttt accgcttttg ttgaacgacg atctgaattt
     7681 ccttgtctta atacaggatt aaccgctgaa cctaaaactt tttgatattt tgttttaatt
     7741 tgcaattctt catcattttt tggctcatct gggtaatttg gtaacatata acccttatct
     7801 tgcaattctt taatcgccgc cttaagctga ggaatagaag ctgaaatatt tggggtttta
     7861 ataagatttg catccgatct tttgacaagc tcgcctaaaa gctctaaagc atcttcacat
     7921 ctttgttcct cttttaaaca ctcactaaaa gtagctaaaa tccttccaga caaagaaata
     7981 tccgaggttt ttactcctat atgtgcccta cttaaaaaag ctttcactat aggcaaaaac
     8041 gaataagtcg caagagctgg cgactcatct gttaaggtat aagtaatttg catttttagt
     8101 cctttaaaat acttattttt attttcattt ttaagtatat tacaaataaa aaaaaatgca
     8161 agagtaagtt taaagtttgt tttagttttc aaacaaactt taaatatttt taattaagta
     8221 aattagcagg aagttgtatg atatttttaa taagattaaa aggggttttt agggtatctg
     8281 ttaaaatttc ggtatgaaat ttagggtcat ctatgcttcc atctattttt aagtttgtgc
     8341 taatttcttg atttttacct aaaattacat aatttaaaat tggaaccttg gatatagctt
     8401 ctgaagctga ttttaaagtt ttaagctcta aactaaaatc cactgtattt aatcttaaat
     8461 ttgctgatcc taaaccatat atatctacac tatcaccatt taaattaata gccgaaacac
     8521 ttaaaagatc tttttttcta ttaaaaataa tctttccatc atgtaagctt aaaccttttt
     8581 gattaaaagt tggagattta aacatcaata aacttggtac agtatcgata aaggaaataa
     8641 gctgatttat accttttaaa tccttcacat aagtattttt aaaatcgatc tgtccatcaa
     8701 aatactccaa tccacttcct tttatactta agttaaacac tccatcttga acagcttgtt
     8761 tttgtaaaaa ctcatttaaa taattatcat caatattgct aacgtttaaa tttaaatcat
     8821 tagaagaata ataaagatca aattttgcat ttcctctaga acctttaaga tctaaagcat
     8881 tgccttttaa atcagcttct actctatcaa aagccaaagt tttattagaa tctgccaaaa
     8941 ttaaagctac atttgctcca ccaaaactaa tattttgggt attagtagca atatcaaatg
     9001 ttgaatttga agagttggaa tgttttctat aaatataact taaatttttt aaatgaattt
     9061 ctttattatc agaacttatt ttagcacttg ctgtatcact ttgagtatga atttccataa
     9121 tgcccttatt ttttacaata tcaaagctat cattttcata aggagtttga ccgttgataa
     9181 gtaaattatt tttaaaataa gcatcattaa cacttgcatt aaaatcttca aaatttaaag
     9241 ttttataata aacattttta gcattgataa acccaagctt tttaagtaat ggagaaaatg
     9301 aaaataaaat cttaggatta ttaagattag cctcaagtcc atctttaaaa tttaaaatca
     9361 aattccactg aggaatgcta atgttaacat tttgcgaata atctaatttt acttctacat
     9421 tttgattttt taaatctaaa agctccccat tgtcaaaata aagccttgaa atctgagtat
     9481 tgaaatttcc ttgctgtttt tgtaagtcaa atttagcatt aaaatcagct tctaaaaagc
     9541 catttttaac actggcattt tctatattta aatcattttg atttaatttt acaaatgctt
     9601 ttgtaatatt aaaatcagcc aaagaaatac tagcattctc taaagctaaa ataccactat
     9661 aagaaatttc acccttatca tgaaaatcaa ttttaagctc caaatcactt ttaatttttc
     9721 cgcttttttg ataaaaaggt agtgaaaaat gataatcctc taaagcttta gcaagttttt
     9781 cgtcaaattt tagattatca gacttaatgc gcaaataaat cccaactttt ttttcatcaa
     9841 acaaatcata tagataaacc ttactagaac ttaaatcagc accattatag aaagctttat
     9901 taaagacaaa atcgagcttt tgtttgttta aatttaaatc gagttttgga atttcaatag
     9961 cattcatttt atcatccaag cgaactttga cattattaac ataacctgat gcactaatat
    10021 tgtctaaata ataattatct ttagtaaaat ctataaagcc ctgcaaataa tctaaatgat
    10081 aaaattctcc cttagcccta tatgctaccc aaagatttaa actctgcgga agttctattc
    10141 ttttattaac tcttttaaaa atttccgtaa tatttctaat gtttaaatct tctattttat
    10201 aagctaaatt tttatctttg taagagatac ttgcgttaaa gtcaagcaat tctccacttg
    10261 ctctaccttg aaaataataa aactcactct tagtattgat acttaaattt ccatcaatat
    10321 ttaaatcata atcttttaat aaaagttttt taatatcagc tataagttct ttattttgac
    10381 gctgtaatgt taattt
//
LOCUS       DAZAND010000067        10281 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.067, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000067 DAZAND010000000
VERSION     DAZAND010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10281
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.067"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            2..937
                     /gene="rsmH"
                     /locus_tag="ACHDOB_001259"
     CDS             2..937
                     /gene="rsmH"
                     /locus_tag="ACHDOB_001259"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HFN3326182.1"
                     /translation="MLEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNH
                     PDLKFIACDQDQQALEFSKKRLKDFHNRITFIQSNFSEVLEKISYKEELRGILADIGV
                     SSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHF
                     IAEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKDF
                     LGHLENLKPKNCILAIISFHSLEDRIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQI
                     ITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            937..1875
                     /locus_tag="ACHDOB_001260"
     CDS             937..1875
                     /locus_tag="ACHDOB_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326183.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHTKKSNIYLKEDLINVKLEEKQSLAKKFFSKMKER
                     KKEENKKTKKIFSFGRKKINKIKNIQTKPKIQTKNDQNPIQDKKEKKESIKSIEKIQK
                     TEPKIQNSQTIEKRPDIKKQPDIKQSLENLQKKITPQENKQELPKPSNQAQEKQQNDE
                     DAQKAKNVLLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(1863..2354)
                     /locus_tag="ACHDOB_001261"
     CDS             complement(1863..2354)
                     /locus_tag="ACHDOB_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326184.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLVKDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVVLLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYTRKIISKKIIQKAWALHFPYFAYEKYSIMAGEIYKEALKEEIPKANLEQYVLDKII
                     HSK"
     gene            complement(2425..3612)
                     /locus_tag="ACHDOB_001262"
     CDS             complement(2425..3612)
                     /locus_tag="ACHDOB_001262"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HFN3326185.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKVVKASGLVEKIGEQNSKVILKNV
                     LNNESFERELMINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANVAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAFVSSRAASLLEKDKSELNVISAHLGNGASVCAIEKG
                     KSVDTSMGFTPLEGLVMGTRCGDLDPAILPFISHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFELNKQRISGERMINHANSKVKVLVIPTDEELEIARITEEL
                     ISN"
     gene            complement(3626..5131)
                     /gene="pta"
                     /locus_tag="ACHDOB_001263"
     CDS             complement(3626..5131)
                     /gene="pta"
                     /locus_tag="ACHDOB_001263"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HFN3326186.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLEEYDFITPHRFKYELIKQSVKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDAARLSLDLSTIQIMNPLNSEYNQEFTSILYEARKSKGMSLEEA
                     KMLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPTAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            5221..5919
                     /gene="flgH"
                     /locus_tag="ACHDOB_001264"
     CDS             5221..5919
                     /gene="flgH"
                     /locus_tag="ACHDOB_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HFN3326187.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNVE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            complement(5949..7022)
                     /gene="ispG"
                     /locus_tag="ACHDOB_001265"
                     /gene_synonym="gcpE"
     CDS             complement(5949..7022)
                     /gene="ispG"
                     /locus_tag="ACHDOB_001265"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity (ferredoxin) [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HFN3326188.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
     gene            7145..7669
                     /locus_tag="ACHDOB_001266"
     CDS             7145..7669
                     /locus_tag="ACHDOB_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HFN3326189.1"
                     /translation="MDFFKNGGVIWITGLAGSGKSYIAEALYKKLKEKYNNIIYLDGD
                     ELRDLLEHYGYDKQSRIDMSIKRSKFAHFLSSQNMLVIVSAISMWNEIYEHNKKTLKN
                     YFEIYIKCDFEELKKRDKKNLYSKNLKGEISNVVGMDIDFDEPKSNLIIDNTYMTELD
                     NKISYILTALKEKK"
     gene            7680..9071
                     /locus_tag="ACHDOB_001267"
     CDS             7680..9071
                     /locus_tag="ACHDOB_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HFN3326190.1"
                     /translation="MQNLLLYIKNNLTPTLAQILLQALKNSNNEKFFTFVLKNIETIC
                     TWLNSSEFKNRYLSIKHPYPPLINPNFIEIDASRHCAELAWDLNLPLPKHYKFIYISP
                     HGVGAAAFLRYLNQCCDVTCFASWVLPPDAKERYCLNYMCLNDNTITQYAINISEINL
                     PYFDKYLSLLDFNSKIICGVRDPIGILKHNWGRDWSKVLRNYPSEFNLTYDWRYYIDY
                     LTHQNHKIKIDINELQQGVFIISYLLKYFNKDNVYYLDMEEIRQSKAFDTMNLLAINF
                     NFTPPHKDKLDLFKIKEFRGYIRYLFPITLYANSKDINNTFYLNTPKNNKNFNIDKTS
                     SIPIILDRKHINHEKIDIIQEIIKNDLCNDMGVYIDKNDFKQLEQNNLLFSTIKHYLY
                     DFLYQIKITIDETESKMMKEKDVIDYFIKNKSLVYTFFNIFENDLNHLKQKFPNIINS
                     WTYYKEFEKCVKS"
     gene            complement(9986..>10281)
                     /locus_tag="ACHDOB_001268"
     CDS             complement(9986..>10281)
                     /locus_tag="ACHDOB_001268"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326191.1"
                     /translation="ILKNKYFILWMIGFFAIVCLCLYFNLEVKIIASAISAYAVSISL
                     VLNAYSIFEKTRADKFNLTMQLLSKWDEKHFIEARDYTREQQNIKEKKEMKKY"
BASE COUNT         3832 a         1665 c         1302 g         3482 t
ORIGIN      
        1 gattttggaa attcctcata tcccagtttt gcttaatgaa gttcaagaga tttttaaaaa
       61 tcttaaaaca ggttattttt tagactgcac tttaggattt ggcggacata gtgaagcttt
      121 gcttaaaaat catcctgatc ttaaattcat tgcttgtgat caagatcaac aagctttaga
      181 attttctaaa aaacgtctta aagattttca caataggata acttttatac aaagtaattt
      241 tagtgaagtt ttagaaaaaa tttcatataa agaagaatta agaggtattt tagcagacat
      301 tggagtttct tcatttcaac ttgataataa cgaaagaggt tttagtgtaa attctgactt
      361 tttggatatg agaatgaatc aaaactccaa aatatcggct tatgagatta ttaatactta
      421 tacaaaagag caattaactt ccatttttaa agattatgga gaattgcacg atgcacattt
      481 tattgctgaa aaaatttgcc tagaaagaag taaaaatcca atcaaaagcg ccaaggaact
      541 ttatcaaatc ataggaaaag gcaaacaaaa tcatagaaaa atttccaaag ccactttagc
      601 atttcaagcc attagaatag aagtaaatca agaacttaaa gtgcttaaag attttcttgg
      661 gcatttagaa aatttaaaac caaaaaattg cattttagca atcattagtt ttcattcttt
      721 ggaagataga atagtaaaaa attttttcaa aaaatggtca aaaaactgca tttgtgatga
      781 aaaaataatg cgttgcgaat gtggaaataa ccatagccta gggcaaataa taaccaaaaa
      841 agctataagt gcaagcaagg aagaactttt aaaaaattct cgctctagtt gtgctaaaat
      901 gcgggctttt tattttaata atttggacaa taaataatgc tagaagatga ttttataaaa
      961 gaacgccaaa acatacgcca aaaaatgctg aaattttctc gcgctataaa tcaaggcaaa
     1021 ccgcttgatg atgatttaag agatgaaatt tctagcgatg atattttaag acgtcgtttt
     1081 aaaaaaaaga ctcctaataa attcttagaa gaactcgatg aagagtatga gtcaaaacat
     1141 actaaaaaat caaatatata tttaaaagaa gatctgatca atgttaaatt agaagaaaag
     1201 caatctcttg ctaaaaaatt tttttccaaa atgaaagaaa ggaaaaaaga agaaaataaa
     1261 aaaactaaaa agattttttc atttggaaga aaaaaaataa acaagataaa aaatattcaa
     1321 accaaaccaa aaattcaaac aaaaaatgat caaaacccta tccaagataa aaaagaaaaa
     1381 aaagaatcca taaaatctat agaaaaaatt caaaaaaccg aacctaagat acaaaattct
     1441 caaactatag aaaaacgacc tgatattaaa aaacaacccg atattaaaca aagtttggaa
     1501 aatttacaaa aaaaaataac accacaagaa aataaacaag aacttccaaa accatctaat
     1561 caagctcaag aaaaacaaca aaatgatgaa gatgctcaaa aggcaaaaaa tgttttacta
     1621 gaaggcttct ctaatgccac caaagaagat agaaacctaa atttcaatca tcttcttttt
     1681 gcggctttac ttgttagttt tgcgttattt ttatttgctc cacaaattta tattagaaat
     1741 caaatttatt atcttagtag agaaattgct acattaagaa cagaagaaag cgttttaaac
     1801 gaagaaaata aagatttaaa aagaagactt gaaaatatgc gattccaaaa tcaaatttta
     1861 gattatttag aatgaataat cttatctaaa acatactgct ctaaatttgc ttttggaatt
     1921 tcttctttta aggcttcctt ataaatttca cctgccatta tagagtattt ttcataagca
     1981 aaataaggga aatgcaaagc ccaagctttt tgtattattt tttttgagat tattttgcga
     2041 gtataaactt taaaaatatc atatcctata aatacacaag cagtaaccat aacagcactc
     2101 actatgctta tatgaaagtc aagttttgtt aaaaaataat gagtaattaa aagcaatggt
     2161 aacaaaacca cagcacaaaa aacaccaaaa taaatataag aatttagaat tttgaaatta
     2221 aaatttagct tagaaggatc tacaagcata ccgtcattaa aaagtgcatt tgcctctaat
     2281 aaatccttca ctaaaacagg ttgttctgat actttaaata aaaaacgaag gctaaattct
     2341 ttaaattttt tcataatcca cgctttattt tttaattaaa attttatcta aacaaaatta
     2401 atttttacta aatataatcc tctttcaatt gcttattaat tcttctgtga ttctggctat
     2461 ttctaattct tcatctgtag gaataacaag cactttaact ttagaatttg catgatttat
     2521 cattctttcg cccgaaatcc tttgtttgtt aagttcaaaa tctaactcga taccaagatg
     2581 agctaatctc tcacatactt tttgtcgaac caaactatca ttttctccta tgccacctgt
     2641 aaaaataata gcatcggttt ttggcaacac agcaaagtag gatcctatat atttaacaag
     2701 acgataacaa aacatatcaa gagccaagcg tgctttatca ttaccttgtt ctatctctct
     2761 ttctatatct ctaaaatcat tataaccgca aattccatat actccacttt ttttattcat
     2821 cagtgtatct atttcttcta tggttaaacc cttaagatga ctaataaaag gtaaaatagc
     2881 aggatctaaa tctccacaac gcgttcccat aacaagccct tcaagcggag taaatcccat
     2941 agaagtatcc acactcttac ctttttctat agcacataca cttgcaccat ttccaagatg
     3001 agcagagata acatttagtt cacttttatc tttttcaagc aaacttgccg ctctagaact
     3061 gacaaaagca tgagaagtcc catgaaaacc atatcttcta atattatgct tatcataaaa
     3121 atcataaggc aaagcataca tataagcaaa atcaggcata gtacgatgaa aagctgtatc
     3181 gaaaatagcc acatttgcaa cactaggtgc agctttaatc attgttttta tacctgctaa
     3241 atgggcagga ttatgcaaag gagcaaaaat actaacccta tctatctctt taagaacata
     3301 gtcatctact aaacaatgct cacttaaatt tcttcccccg tgaactatac gatgaccaca
     3361 gccatcaaga gcatttaaat ccgctaaaat tcctgattct ttaaaaagct cattgactat
     3421 actaagtcct tcttcgtgat tatttatcat taattctctt tcaaaacttt cattatttaa
     3481 aacatttttt aatataactt ttgaattttg ctctccgatt ttctctacta aaccactcgc
     3541 tttaacgact ttattatcaa aaaatttaaa tttaatcgat gaagaacctg aatttaaaac
     3601 taaaattttc atttattatt cctttctatt gagcttgtat agcacttaaa ataacagtat
     3661 ctacaatatc atctaccaaa catccacgac ttaaatcatt aacaggtttt ttaagacctt
     3721 gcaaaatagg accgattgct aaagcattag cagttctttg aactgctttg taacaaatat
     3781 ttgctgcatt aagatcagga aaaatatata catttgcatg gcctgctatc ttagaatttg
     3841 gcattttctt tgctgcagtc tttggatcat aagcgcaatc aaactgcata ggaccatcta
     3901 tatttaactc agggtatttt tctttagcaa tctttaatgc ttcttttaca agatctacgc
     3961 tttctccctt accgctatca ccactagaat aagaaagcaa agctattctt ggttcaagtc
     4021 caaaagattt agcagtcata gcacttacat aagcactagt tgcaagctgt tcagcagttg
     4081 gacttggatt tacagcacaa tcagcaaaag ctaaaacttg atcttcaagc cccataaaga
     4141 aaattcccga aacagaacta ataccttctt tggttttaat aagctgcaat gcagggcgaa
     4201 tcgtttcagc cgtagtagtt gatgctccac taaccatagc atcagctttt ccagtatgta
     4261 taagcaaagt tccaaaataa gttttatcct gaactagcat cttagcctct tctaaactca
     4321 ttcctttaga ttttcttgcc tcataaagaa tggaagtaaa ttcttgatta tattctgaat
     4381 tgagcggatt cataatttgt atagtactta aatcaagact taatctagca gcatcttgtt
     4441 tgattttttc ctcatcacct aataaaataa gatcaacaac tttacttttt aataaaattt
     4501 cagcagcttt taaaattctc tcatcattac tttctggcaa aacaacagtt tttttatttt
     4561 ttacgctttg tttaatcaat tcatatttaa aacgatgtgg agttataaaa tcatactctt
     4621 caagcttttg cacttcctca aaattaaaat tttcattaat caaaacataa ttacgaccat
     4681 ctagggcatg atcgaaatat ttttgagcta taagtttatc ctcatcgtta ataatagcag
     4741 cgataggggt attaagattt ttagccaatt ttatactaag atcaaatcca tcaagtattc
     4801 caaattcgca aaagctattt acaagcacaa aatcgtattt gcgttttaac tcttcgtatt
     4861 cttctaaaat aacattaaaa aaattatgag gatctttgct aaattcctcc attgcttctc
     4921 taaaggtaaa accataagcg ctttttacag tttgattgat attaaattct tccaaccaac
     4981 cttgcaaaac agggacgcga tgtatgtata ttacagggca ataaattgcg atatttttgt
     5041 aaattttgct ataattttta agcaaatttg tactaataat agtatttaac tcatcacttc
     5101 tagatctcat caaataaaga tttgccatca ttttctcctt gaatttataa atgtggaaca
     5161 ctctttgctt tttctaattt taacaaagaa aaataaaaat tcatatttta aaggacgaaa
     5221 atgaaaaaag ttttatttta tgtgttaccg tttgcgtttt ttggttgttc tgcaacggtt
     5281 gatccgcaaa tttcaatgaa accacctgct tatgtagaag aacttgcacc aaaacaaagt
     5341 aataatgtag aaagtgcacc aggatcgctt tttggcaaag gggataatcc tttattttca
     5401 gataaaaaag ctatgaatgt aaatgattta gttacagttg ttatacaaga aagtaccact
     5461 caaagcacac aagctaataa agcaacaagt agaactaata cctcaaattt aggcggaggt
     5521 gctttaacag gaagttcagg agtggtagct aatgctctta ataaagtcaa tgcttattct
     5581 aatataggct ttcaaaccaa tagttcaaac aactacacag gaacaggctc acaaagcaga
     5641 aatgaaagtt tcaatactac aatttcaacg cgtgtaatta aaattttatc aaatggtaat
     5701 tattttatcg aaggctcaag agagctttta atcaacggag agaaacaaat catacaatta
     5761 agcggtgtta ttcgtcctta tgacatcggt caagacaata ctatagatag taaatatata
     5821 gcagatgcta aaattcttta taaaacagaa ggtgaagtgg atagaagcac aagaaaacct
     5881 tggggtagca aagttataga agcgatatgg ccattctaaa agcaaggtta aaccttgctt
     5941 cttggctttt attcttttac agccctactt ttaacctcat cttcaacttc agctaaaaat
     6001 ctatctacaa gttcactttc ttttaattta gctacaactt caccatgtct tataacaagt
     6061 ccttgatttt tcccaaaggc tatagccaca tcagcgccct tagcttcacc taaagcattt
     6121 actacacaac ccataacact gatatttaaa ggttctttta tatgcttggt tttttcttct
     6181 acgattttaa tcgcgcttaa caaatcactt tgaatcctac cgcaagttgg acatgagatg
     6241 atatttactc cgcttttttg cactccacta tcttgcaaaa tcgctcttgc tacacgaatt
     6301 tcctcttcaa gctcacccgt catagaaaca cgcatagtat cgcctatacc tttaagaagt
     6361 aaatttccta aagctataga actttttaca gtgctatgaa atttagttcc tgcttcagtt
     6421 acccctaagt gaaaaggata atcacaaagc ggtcttaatc tctcataagc ttctatagtt
     6481 ttttgagcat ctgaagtctt catggaaatt ttaatatcaa aaaagtctaa atcctctaaa
     6541 agcttgatat tatacatcgc actttctagc atagcatcga caccatagcc aaatttatca
     6601 ctaaattgtt tttctatgga gccgtgattt acaccgatac gtatagggat accccgttct
     6661 ttacatgctt ttaccacttc tttgatattt tctttagaac ctatattgcc aggatttata
     6721 cgcactccat cgataaattc agcacaatat acagccaaat tatgattaaa atgaatatct
     6781 acgattaaag gtagaggact tttagcttta atctctttta aagcccttgc atcagccata
     6841 tccaagcacg ccaaacgcac tatgtttgct cctgcaaaat aaagacgatt gatttgttct
     6901 aaagaacctt ctatatctct tgttttagta aaaagcatag attgaactga aatgggtgca
     6961 tcaccgccta ttaaaacatt tcctactttg atttgtctgg ttttaaatct tttatactcc
     7021 ataacttcac tctttgaaaa attttaatat caaattttaa ctttttattg ctttaattaa
     7081 agtttatttt tgataatata ggaaaaattt ttacatttat actaaacaaa aaaggaggtt
     7141 atctatggat ttttttaaaa atggtggagt tatttggatt acaggactag caggaagtgg
     7201 caaaagttat attgcagaag cattatacaa aaaattaaaa gaaaaataca ataatattat
     7261 ttatcttgat ggcgatgaac tgagagatct tttagagcat tatggatatg ataaacaaag
     7321 tcgtatcgat atgtcaataa agcgttctaa atttgcacat tttctcagtt ctcaaaatat
     7381 gctagttatc gtaagcgcta tttccatgtg gaatgaaatt tacgaacaca ataaaaaaac
     7441 tttaaaaaat tactttgaaa tttacataaa atgcgatttt gaagaattaa aaaaacgtga
     7501 taaaaaaaac ttatatagca aaaacttaaa aggtgaaatt tcaaatgttg tgggaatgga
     7561 tattgatttt gatgaaccaa aatctaattt aataattgat aatacttata tgacagaact
     7621 tgacaataaa atttcctaca tcttaacagc tctaaaagaa aaaaaataaa gaaaaaagca
     7681 tgcaaaatct tttactctat ataaaaaata acctaactcc aaccctagct caaattcttt
     7741 tacaagcttt aaaaaattcg aataatgaaa aattttttac ctttgttttg aaaaatattg
     7801 aaacaatttg cacttggctc aattctagcg aatttaagaa tagatattta tcaataaaac
     7861 atccttatcc acctttaatc aatcctaatt ttatagaaat agatgctagt cgacattgtg
     7921 cagaattagc ttgggattta aatttacccc tacctaaaca ctataaattt atctatattt
     7981 ctccacatgg cgttggagca gcagcatttt taagatacct taatcaatgt tgcgatgtaa
     8041 cttgttttgc ctcctgggtt ttaccacctg atgccaaaga aagatattgt cttaattaca
     8101 tgtgtctaaa tgacaatacg attactcaat atgctattaa tatatcagaa attaatctac
     8161 cttattttga taaatatcta tctttattgg attttaactc taaaattatt tgcggagttc
     8221 gcgatccaat aggaatttta aagcataact ggggaagaga ttggagtaaa gttttaagaa
     8281 actatccctc tgaatttaat ctaacttatg attggcgtta ttatattgac tatcttactc
     8341 atcaaaatca taaaattaaa atcgatataa acgaactaca acaaggagtt tttatcatct
     8401 cttatttatt aaaatatttt aacaaagaca atgtatacta tcttgatatg gaagaaatcc
     8461 gccaatcaaa ggccttcgat accatgaatt tacttgctat aaattttaat tttacccccc
     8521 cccataaaga taaattagat ttatttaaaa ttaaagaatt tagaggttat attcgctatc
     8581 tttttcctat cacactctat gcaaattcta aagatattaa taacaccttt tatcttaata
     8641 ctcctaaaaa taataaaaat ttcaatattg ataaaacttc tagcattccc ataattttag
     8701 acagaaaaca tatcaatcat gaaaaaatag acataataca agaaattata aaaaacgatc
     8761 tatgtaatga tatgggtgta tatattgata aaaatgattt taaacaatta gaacaaaaca
     8821 atcttttatt ttcaacaatt aaacattatt tgtatgattt tttatatcaa attaaaataa
     8881 ccatagatga aacagaatca aaaatgatga aagaaaaaga tgtaatagat tattttataa
     8941 aaaataaatc acttgtttac acttttttta atatttttga aaatgatcta aatcatttaa
     9001 agcaaaaatt tcccaatata attaactctt ggacatacta taaagaattt gaaaaatgcg
     9061 tcaagagtta gatgacaata ttcagggaaa agatgtaagg ggtattttaa aaagagtatg
     9121 taactatccc taaataattt tagcaaaaaa taccaaataa taggatttta aagcttacaa
     9181 aaatgacttt ttatctttcc tagtttaaag tgtaaaaaat cccaaatatc ccaaaaatcc
     9241 caaaatgtct gttttatccc aaaaaaactg attaaatgct gtttaaaagg cggataaata
     9301 cgagctttga ttttaaattt tatatcccaa aagtgttttt tactctctag gatagttaca
     9361 tttttgctta aaatattctt atatttttta accttgtaac tatctctata aaacactata
     9421 taatcatact ttaaccactt tttatataaa aatagtatgt aactatctat agctttaagg
     9481 tttggaggat agttacatag aaaacttaaa catttagttg gtttttataa tcttataata
     9541 gactaagatt acttcaattt atttaaaaat tatttttatt tttgatttta ttttttaact
     9601 ttgatgataa cttttgccaa ttataatgtt ttttaaaaga taaatataaa gagtgattaa
     9661 cttttataga aatatatagc tatatttagt tttaggtttg taaatatagc tacattattt
     9721 tttaaattaa attatgatat ataggtattg catctatttt ttaattttat aagtttttta
     9781 agccccaagg gattattttt tttgaaatca tcgctattta agtaacaatc atacctttcc
     9841 aagatatctt ttaacatatg tgcaaaatgc tccattataa taccttcatc tatcctatta
     9901 ttttcaataa aagtttgaag tgtttcaaaa taattcatca tcattataat tgatcttttt
     9961 aattctggtt tttctttaat ttcttttaat atttcttcat ttcctttttt tcttttatat
    10021 tttgttgctc tcttgtataa tctcttgcct ctataaaatg tttttcatcc catttagata
    10081 ataactgcat tgttaaatta aatttatccg ctcttgtttt ttcaaaaata gaataagcat
    10141 ttaacaccaa tgagattgac accgcatagg cagaaatggc agatgcaata attttaactt
    10201 ctaaattaaa atataaacat aaacatacga ttgcaaaaaa cccgatcatc cacagaataa
    10261 aatatttatt ttttaatatt t
//
LOCUS       DAZAND010000068        10056 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.068, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000068 DAZAND010000000
VERSION     DAZAND010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10056
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.068"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..859
                     /locus_tag="ACHDOB_001269"
     CDS             <1..859
                     /locus_tag="ACHDOB_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HFN3326192.1"
                     /translation="DKEILHFNSGYHLNISCIAALSSVSKTLFLTDKFIHASMIDGLR
                     LGRADFFRFHHKDMNHLESLIQKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRY
                     DKIKLYIDEAHSVGCFDEEGLGLVKKLALENEVDFLVFTFGKALASMGACIICDEKYK
                     KFFINKARAFIYSTALPPINVAWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHI
                     VLGDAYIICLLLGENKKALEISQKLQKAGFFAPAIKEPTVPKNTARIRFSLHAGLNTE
                     ELERIIELL"
     gene            856..1467
                     /locus_tag="ACHDOB_001270"
     CDS             856..1467
                     /locus_tag="ACHDOB_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl esterase BioG family
                     protein"
                     /protein_id="HFN3326193.1"
                     /translation="MKYEFLCKNPDSKKLIVVFGGFASHPSHFSHLKSDKNVILFYDY
                     ENFDLNFDFKAFDELFLIAFSMGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPT
                     IFKKTLQNFKLEHFKETLFKERKSLAKDFIFKDEKALKIELEKLFDFALTKQEENLLW
                     DKVYSSKEDEIFPPNALKNSFKNLIFLDEPHFAFFHFKTWDEL"
     gene            1464..2150
                     /gene="bioC"
                     /locus_tag="ACHDOB_001271"
     CDS             1464..2150
                     /gene="bioC"
                     /locus_tag="ACHDOB_001271"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010340 - carboxyl-O-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HFN3326194.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKDLKISHFEKVFEFGCG
                     RGEFSKKLQNFITFDEYLKNDILDFKENSNILIFDMNEISKQDLSKEKFDLIVSNATL
                     QWLDLKRILPSLRDMLNQNGILLLSTFAEQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELIKLSFDNALDVFRHLKLSGVNSLGFYPLNKGFLKEFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            2201..2950
                     /gene="modA"
                     /locus_tag="ACHDOB_001272"
     CDS             2201..2950
                     /gene="modA"
                     /locus_tag="ACHDOB_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HFN3326195.1"
                     /translation="MKKFIVFFGILFFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGIENLKEKAGKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAIIIDTKYFSPLEQSYVITKY
                     AKDKKLAFEFSEFIGSSKAKEIFKKYGFSTP"
     gene            2947..3348
                     /locus_tag="ACHDOB_001273"
     CDS             2947..3348
                     /locus_tag="ACHDOB_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HFN3326196.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSILMLELKYLENLKI
                     GASVELLFKEHELCFSTSKTLLSVENSFLAKITKIKKGELLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            3341..4015
                     /gene="modB"
                     /locus_tag="ACHDOB_001274"
     CDS             3341..4015
                     /gene="modB"
                     /locus_tag="ACHDOB_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HFN3326197.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKGKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYNLAHQYAFILFIFSFLVLFSLYFVN
                     KKMSFQ"
     gene            4012..4896
                     /locus_tag="ACHDOB_001275"
     CDS             4012..4896
                     /locus_tag="ACHDOB_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HFN3326198.1"
                     /translation="MIRIDINHPINTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNVKENIA
                     YATSSKAKVSELLALMGLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELAKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSSISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDIKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(4981..5754)
                     /locus_tag="ACHDOB_001276"
     CDS             complement(4981..5754)
                     /locus_tag="ACHDOB_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HFN3326199.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            5974..6798
                     /gene="panB"
                     /locus_tag="ACHDOB_001277"
     CDS             5974..6798
                     /gene="panB"
                     /locus_tag="ACHDOB_001277"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HFN3326200.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            6809..7657
                     /gene="panC"
                     /locus_tag="ACHDOB_001278"
     CDS             6809..7657
                     /gene="panC"
                     /locus_tag="ACHDOB_001278"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HFN3326201.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            7654..8034
                     /gene="panD"
                     /locus_tag="ACHDOB_001279"
     CDS             7654..8034
                     /gene="panD"
                     /locus_tag="ACHDOB_001279"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006523 - alanine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HFN3326202.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(8144..8602)
                     /locus_tag="ACHDOB_001280"
     CDS             complement(8144..8602)
                     /locus_tag="ACHDOB_001280"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFN3326203.1"
                     /translation="MLRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGFELIRENKVIKEGQNLKKFLMKKDVVYKN"
     gene            complement(8586..9245)
                     /locus_tag="ACHDOB_001281"
     CDS             complement(8586..9245)
                     /locus_tag="ACHDOB_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HFN3326204.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     S"
     gene            complement(9235..10011)
                     /gene="surE"
                     /locus_tag="ACHDOB_001282"
     CDS             complement(9235..10011)
                     /gene="surE"
                     /locus_tag="ACHDOB_001282"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HFN3326205.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYEKMKKVKKWLKANDE"
BASE COUNT         3481 a         1405 c         1576 g         3594 t
ORIGIN      
        1 agataaggaa attttacatt ttaatagtgg ctatcattta aatatctctt gtatagcagc
       61 actttctagc gtttctaaga cgctttttct aaccgataaa tttattcatg caagtatgat
      121 tgatggctta agacttggca gggctgattt ttttcgtttt catcataaag atatgaatca
      181 tttagagagt ttaatccaaa aacattatga aaattatgaa aatatcatcg ttttaagcga
      241 agctttgttt agtatggatg gagattttag cgattttaaa actctgtgtg agcttaaaag
      301 gcgttatgat aaaattaagc tttatataga tgaagcacac agcgtgggtt gttttgatga
      361 agagggtttg gggcttgtta aaaaactagc cttagaaaat gaagtggatt ttttggtttt
      421 tacctttgga aaagcccttg cttccatggg tgcttgtata atatgtgatg aaaaatataa
      481 gaaatttttc atcaacaagg ctagagcttt tatttattct acagccttgc cacctattaa
      541 tgtagcttgg acgcaattta tttttaaaaa aatgccttat tttaagaaag aaagagaaaa
      601 attagagctt ttaagcactt tttttaaaag taaattgcaa gaaaaaaatc acatcgtttt
      661 aggcgatgct tatattattt gcttgctttt aggtgaaaat aaaaaagcct tagaaatttc
      721 acaaaaactt caaaaagctg gtttttttgc tcctgcgatc aaagaaccta ccgtgccaaa
      781 aaatacagcc agaattcgtt tttctttgca cgcaggactt aatacagaag aacttgaaag
      841 gataatagag cttttatgaa atatgaattt ttatgcaaaa atcctgattc aaaaaaactt
      901 atagtggtat ttggagggtt tgcttcacat cctagtcatt tttcgcattt aaaaagcgat
      961 aaaaatgtga ttttatttta tgattatgaa aattttgatt taaattttga tttcaaagct
     1021 tttgatgagc tttttttaat cgctttttct atgggagttt gcgtagcaaa tagactttta
     1081 aaagagctta attttaaaca aaaaatagcc ataaatggca caaatttagg catagataaa
     1141 tcaaaaggaa ttcatcctac aatttttaaa aaaaccctgc aaaattttaa attagaacat
     1201 tttaaagaga ctttatttaa agaacgcaaa agcttagcca aagattttat ttttaaagat
     1261 gaaaaagctt tgaaaataga gcttgaaaaa ctttttgact ttgctttaac aaaacaagaa
     1321 gaaaatttgc tttgggataa ggtttattca agtaaagaag atgaaatttt tccgccaaat
     1381 gccttgaaaa atagttttaa aaatttgatt tttttagatg aaccgcattt tgcttttttt
     1441 cattttaaaa cttgggatga gctttgaatt ttttaaaagc aaaagattat gaaaaacatg
     1501 caaaagtgca agatttcatg ggtttaaaac tttgtgaaat tttaaaagat ttaaaaattt
     1561 cacattttga aaaagtgttt gaatttggtt gtggtagggg tgaatttagt aaaaaacttc
     1621 aaaatttcat tacctttgat gagtatttaa aaaacgatat tttagatttt aaagaaaatt
     1681 ctaatatttt aatttttgat atgaacgaaa tttcaaaaca ggatttaagt aaagagaaat
     1741 ttgatcttat tgtttcaaat gcaactttgc aatggcttga tttaaaacgc attttaccaa
     1801 gtcttaggga tatgctaaat caaaatggaa ttttacttct ttctactttt gcagaacaaa
     1861 atttaaaaga aatcaaacaa agcacaggtt ttggtttaaa ttattttagt ttaaatgaat
     1921 tagagcaaat ttttaaagtc tattttaatg aagtaaaaat tactcaagaa ctcataaaat
     1981 taagctttga taatgcttta gatgttttta gacatttaaa attaagcggg gtaaattctt
     2041 taggttttta tcctttaaat aaaggttttt taaaagaatt tgaagaaaaa tttcaaaaca
     2101 aactcactta tcatcctgta tttattttat gcaaaaatga tataaaatga attttttgtg
     2161 ttataatcca aaaattaaat ttttacacaa ggaaaactaa atgaaaaagt ttatagtatt
     2221 ttttgggatt ttgttttttg tttcgtgttt aaatgcacaa aatttaagca tttttgtagc
     2281 ttcttcagct tcaaaggcga tgagtgaagt taaagatgag tttttgaaaa cacatccaga
     2341 agataaaata gaattggttt ttggtgcttc tggaaaatat tatgagcttt taaaacaagg
     2401 aagagaattt gatctctttt tttcagcgga tactaaatat gctaaggcta tttatgatga
     2461 taaaaatgct ttaataaagc caaaagttta tgttttagga gttttggctt tgtatagttt
     2521 ggatgaaaat ttactccaag gaggcattga aaatttaaaa gaaaaggcag gtaaaatcac
     2581 gcatctaagc atagccaatc ctaaagtagc tccttatgga gtagcagcta aagaagtgct
     2641 tgaaaatttg ggtttaaatg agcttcttaa ggataaaatc gttttaggcg aaaatatctc
     2701 agtgcctgtt ttacatgtag atagcaaaaa ttcagatata gctatagtgg cttattcttt
     2761 agtttcttct atcaatcatc ctaagggtaa ggctattata attgatacaa agtattttag
     2821 ccctttagag caaagttatg ttatcacaaa atacgctaag gataaaaaat tagcctttga
     2881 atttagcgaa tttattggct cttcaaaagc aaaagaaatt tttaaaaaat acggatttag
     2941 cacaccatga accttataaa aggacaaatt tgcgagcttt taaatcaaga ggatatagtt
     3001 attgttaaaa tactttccaa agaagtgatt tttagtattt taatgcttga attaaaatac
     3061 ttagaaaatt taaaaattgg tgcgagtgta gaacttcttt ttaaagagca tgagctttgc
     3121 tttagtacaa gtaaaactct tttaagtgtt gaaaattctt ttttagctaa aattacaaaa
     3181 attaaaaaag gcgaactttt gtatcaggta ttttttgatt ttaaaggtaa cgaactttct
     3241 agtattatca ccaaagaaaa agctttagaa cttgaaattt gtgaaaatca agaatggctt
     3301 tgttttgtaa aagcaaatga tattgtatta aggagtcata gtgcttgatc cagctttttt
     3361 acaaactctt tatcttactt ttaaacttgc ttttatcacg acttttattc ttttttttat
     3421 tggtgtattt ttagcttatt tgttaagttt tgtgcgtttt ccttttaaaa caatccttca
     3481 aagctttatt tctttgcctt tgattttacc tcctagcgtt ttgggatttt atttgcttgt
     3541 aactttttcg gctaatagtt ttttagggca agttttaaaa gaatatttta atctttcttt
     3601 ggtttttagt tttgaaggtc ttgtttttgc ttctttgatt ttttctttgc cttttatggt
     3661 aaatcctttg caaagtgcct tttcatcgat caatccaaat ttgctcgatg cttcttatag
     3721 tttaggtaaa ggtaaaattt atactctttt tagagtgatt ttacctaatt ctaaagcagg
     3781 aatttttagt gcttgtgcga tgagttttgc tcatactgtg ggtgaatttg gagtcgtgat
     3841 gatgatagga ggacataaac aaggtgaaac tttagtagct agtatagcta tttacgatga
     3901 acttgaaatc ttaaactata acttagccca tcaatatgct tttatattgt ttattttttc
     3961 ttttttagtg ctttttagtc tttattttgt caataaaaaa atgagttttc aatgataaga
     4021 attgatatca atcatcctat aaatactgct aaaggaagac tggatttaaa ttttaaaaaa
     4081 gatatagaat caggaaaaat tactgcactt tttggcgaaa gtggagcagg aaaaaccact
     4141 cttttaaaaa tcatagcagg acttataaag cctaaattgg ggcgtataga agtagataat
     4201 gaactttggt ttgattcttc aaaaaatttt agcttagctt tacaaaaaag aaaaattggt
     4261 tttgtttttc aagattatgc gctttttcca aatatgaatg taaaagaaaa tattgcctat
     4321 gccactagtt ctaaggcaaa ggttagcgag cttttagcct taatgggact tgaaaatttg
     4381 gctaaaattt atcctaaaca tttaagcgga ggacaagcac aaagggtagc cctagcaaga
     4441 gctttagcaa gggaaccaaa aattttgctt ttagatgagc ctttaagcgc tttggatttt
     4501 aaaatgcgcg ccaatttaca agatgaattg gctaaaattt tagagtattt taagataagt
     4561 actttattag tcagtcatga tttggctgaa atttataagt taagtcatag aattttagag
     4621 cttaaaaatg gaaaaatcat taaggatttt cctaaaaatg aattttttac tcattcaagt
     4681 attagtgcaa aattgcgttt gagtgcaact ttgctagaaa ttaaaaaaag tgatatttta
     4741 gtggttttaa ccttgctttt aaatcaagat attattaaaa tcactcttag tgaagaggaa
     4801 tttctaaaag cttatcaaga tataaaaatc ggcgatacgc ttttgctatc cataaaagcc
     4861 tttaacccta tcatcgtagg aaaacttgat aaataagagc aaaaatttaa ttttttaatg
     4921 agtactttaa gtgtacgcaa atcatacaat taagtatttt tgcattttac gaaatactca
     4981 ctagccatca tttttaactt tttttacaag ttcatctaaa tatttttcta aaattttttc
     5041 tcttttatat aaatcttcaa atttatcaat atctaaattt agcgcgaaag ccttatattt
     5101 attttcatct tttaaataca caaaacctac aatccaagca attttttgct catcattaaa
     5161 acctgttttt ccaaaaagct ctaaattttc catatttttt aaataaatca tttccttaac
     5221 actattcatt gcttcttgag aaaaaggtaa gctattttgt gaaagtctaa aaagcaaaat
     5281 tgcttgttct ttagcgctta tttttagtga gttgtcaagc caaaaagtat cgatcttgga
     5341 aattttagca ttaccataat gaagcttgtt taaatattct tgcatagttt tgataccaat
     5401 tcttcttgcc acttctttaa aagcaagaac attagaatat tttatagctg aacttaaatt
     5461 catatcttgc gcccaagaag ataaaaatac tttttcacct ctatagtgat aaaaaatttc
     5521 ttttttagtt tttatcacac cactatcaag tgcaattaga gcattaaaaa ttttaaaagt
     5581 ggaagcggga gagaaagtct ccatagccct tgaaaagtcg ttactcgccc aagtttttcc
     5641 atcataaaaa acaaaagtgc cgcttgtatt atactcttta aaccaattat ttaatatctt
     5701 atcttgccca aacactaaat ttaagaaaag taaaaataaa gttatttttt tcataaaata
     5761 tctttctatt taaataattt taaacaaaat actttttaaa gctttatttt ctttaaatat
     5821 cctttaacat gaactgaaat tttctaaaat tgtaaccatt aaagcaatcc atcgattaaa
     5881 tataacttac tttatcattc atttactatt tatgaaaaat tatatgctag ttttttgctt
     5941 attattttat agctaaaaat tgaggtatgc aaaatgagaa aaagtatgat tagttttttg
     6001 gaaaaaaagg ccaaaaatga aaaaataacc atggtaagtg cgtatgatta tcatagtgca
     6061 agaattttag acaatagcga tatagatatt atattggttg gagattcatt agccatgacg
     6121 gtacttggta tgcaagatac tttaagtgtt actatggatg aaatgttgat ttttaccaaa
     6181 gctgtttctc gcggagctaa aaagtctttc gtacttgctg atatgccttt tatgtcttat
     6241 caaagttcag atcgtgacgc tatcttaaat gcctcaagat ttatcaaaga aagccacgca
     6301 aatggggtaa aagtggaagg gggtatagaa atcgcaagta agattaaatt gatttcccaa
     6361 tcaggaatac ccgtcgttgc tcacctagga ctaaccccac aagctgtaaa tatgctaggt
     6421 ggctataggg ttcaaggtaa agatttacaa tcagcccaaa aaattataga tgatgcaaaa
     6481 gctgtgcaag atgcgggtgc ttgtatgttg gttttagaat gtgtgcctgt aaaactagca
     6541 caaaaaataa gctctatttt agaaattcca acaatcggca taggttcagg caaatactgc
     6601 gatggacaag ttttagttta tcacgatctt ttgggtttaa ataaagattt taaagcaaaa
     6661 tttgtaaagc attttgataa aattgatcct caagtaggag ttgaaaaata tagagatgaa
     6721 gttaaaagcg gtatttttcc ttcccaagag cacagctttg attatttaga tgatgaatta
     6781 ttagataaat tatactaagg atacaaatat gcaagtcatt acttctgtca aagaagcaaa
     6841 acaaattgta aaagattgga aatcacatca acttagtata ggctatgttc caaccatggg
     6901 ttttttacac gatggacatt taagtttagt caaacatgcc aaaacacaag ataaggttat
     6961 agtaagtatc tttgtaaatc ctatgcaatt tgggcctaat gaagattttt ctagttatcc
     7021 aagagattta gaacgcgaca ttaaaatgtg tcaagataat ggcgttgata tggtttttat
     7081 ccccgatgca actcaaatgt atcttaagaa ttttagcacc tatgtagata tgaatacgat
     7141 cactgataaa ctttgcgggg ctaaaagacc ggggcatttt agaggcgttt gcacggtttt
     7201 aactaaattt tttaatatcc taaaccctga tatagtctat atggggcaaa aagacgcgca
     7261 gcaatgcgta gtcgttaggc atatggttga tgatttaaat tttgatttaa aaattcaaat
     7321 ttgtcctatc attagagaag aagatggctt agctaaaagc tctagaaatg tatatcttag
     7381 caaagaagaa agaaaagcgt cactagctat atctcaaagc atttttttgg ctgaaaaatt
     7441 agtccgagag ggagaaaaaa atacttctaa gatcatccaa gctatgaaag atattttaga
     7501 aaaagaaaaa ctaatcaaaa tcgattatat agaattagtc gattttaaca ccatggaaaa
     7561 tatcgaaaat atcactgata atgttttagg agcggtggct gcttttgttg gaaaaacaag
     7621 actcattgat aattttttag tacaaggatt aaaatgaata tcactttact caaatcaaaa
     7681 atacatcgcg caagcgtaac agaagctagg cttgattata taggaagtat aagtatagat
     7741 gaaaaattat tgcaagcgag tggaatttta gaatacgaaa aagtccaagt agtcaatgtc
     7801 aataatggcg ctagatttga aacctatacc atagccacgc aagaagaagg agttgtatgc
     7861 ttaaatggtg ctgcggctcg tcttgcagaa gtgggagata aggtgatcat catgtcttat
     7921 gctgatttta atgaagaaga agcaaaaaca tttaaaccaa aagttgtttt tgtggatgaa
     7981 aataacactg ctacaaaaat aacaaattat gaaaaacacg gagctatttt ctaacatcta
     8041 gctatttttg taattttttc tatcttagat aaattcattt atctaagata gaaaaaaatg
     8101 atttttatat cttttaatcc attatttttg cttatcttaa cttctagttt ttataaacca
     8161 catctttttt cattaaaaat ttttttaaat tttgtccctc tttgataacc ttgttttccc
     8221 ttataagttc aaaaccattt tttaaaaaaa aatctttagc acttaaggat gcgaaagtgt
     8281 aaatttcatt atgcaaataa gtttttaaaa taaaatcaag taaattttgt gctaaacctt
     8341 gtctaacaaa atcaggatga gtaaaaagca aatcaagcaa tttctgctct tgtttaacac
     8401 ttataaaact tgcgattttt cctctttttt catagacaaa gatctcatca tatttaaatt
     8461 tttcttccca ttgttgtcta tcaattttaa tccaagcaca aatttgatct tttgtataat
     8521 ccttagcaca aagtgttttt acgctttgct caaaaagcga caaacaagca tttaaatctt
     8581 taatatcagc ttttcttagc aagaactttt cttaatgcca agctggctag ggctaaacca
     8641 aaagatgcag tcacacccat aaaagatcca agatctttac aatgcgcttc ctcatctgaa
     8701 aataccacat caaaatttcc cttaaagcct gattttctaa gctcataacg aaattttttc
     8761 gctaaagcat cgccgtgagt tttaaaaata cttgtagttt taatgcgtgt tggatcaagc
     8821 tttctagctc cacctgttga ggagataaaa atttgttttt taaaatctat aagatgagcc
     8881 aaagctactt ttgcaggaat atcatcaatg gcatctatga taagatcaaa ctcgcttaaa
     8941 tcaaaatttt ttaaaaaatt ttcatcgatt ttactgacta tacctttaac cttataaatt
     9001 ctttcaaata ctttagcctt ttcttcgcct atattttcgc tatgaatttg gcgattttga
     9061 ttagtgattt caaatttatc cgcatcgatt aaagtaaggt ttttaaaacc actacgataa
     9121 agcgcatcaa cgcaaattcc acccactcca ccaagtccgc aaaccaaaac ttttgtttgt
     9181 gaaatttttt gaaatttttc ttctccaact agccatttta tacgtgtaaa tctatcattc
     9241 atcatttgcc tttaaccatt ttttaacttt tttcattttt tcataagctg taagatccag
     9301 cattataggt gttattgtag cgtagccttt tttaagtaag gcaatatcgc tatttttctc
     9361 atcttcaaag tctaaattcg ccgctgcaag ccaatagtac tctactcctc tcggattgac
     9421 atttgaatgg gcttcaaaat tataaaccct tttgcctgct ttacaaattt taatgccttt
     9481 gatttttgat tttgcaggaa aattgatatt taaaaattct tttttttcca aaggaaaacc
     9541 tttatcaaaa atattttgaa tgattttttt ggtaatttgt aaagcatttt tatagtctag
     9601 ttctttttcg ctttttttat aaaattgaga aagagcgata gcaggaattc cttgtaaaac
     9661 cgcctccata gctcctgcgc aagttcctga gtaggtaata tcctcgccta cattagcacc
     9721 tttattaatc ccacttatta caagatcagg caaacgcttt ttgtataaag catgcaaagc
     9781 aagataaaca caatctgctg gagtgccatc atcaagtttg taaaatcttt ttcccacttt
     9841 aacaaaacgc aaaggtttgg ttagggttat agagtgcgaa caagctgatt tttcactagc
     9901 aggagctact atggtgatct tggctttaaa ttcttttgtt aacatcttaa tgagtttttt
     9961 aagtccttcg ctttcataac catcgtcatt agtgataaga atttctttca ttgtcttcct
    10021 tgcaaaagat aaaatttgga ttttagcata tttttt
//
LOCUS       DAZAND010000069         9912 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.069, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000069 DAZAND010000000
VERSION     DAZAND010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9912
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.069"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            122..433
                     /gene="rpsJ"
                     /locus_tag="ACHDOB_001283"
     CDS             122..433
                     /gene="rpsJ"
                     /locus_tag="ACHDOB_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HFN3326206.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            443..1018
                     /gene="rplC"
                     /locus_tag="ACHDOB_001284"
     CDS             443..1018
                     /gene="rplC"
                     /locus_tag="ACHDOB_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HFN3326207.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            1015..1629
                     /gene="rplD"
                     /locus_tag="ACHDOB_001285"
     CDS             1015..1629
                     /gene="rplD"
                     /locus_tag="ACHDOB_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HFN3326208.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVSEVNAYLVSVFNAVIIEKSALESITKEG"
     gene            1632..1913
                     /locus_tag="ACHDOB_001286"
     CDS             1632..1913
                     /locus_tag="ACHDOB_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HFN3326209.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKVKRFRGRLGQRNDYKKFYVKLPEGVSLENTEA"
     gene            1915..2745
                     /gene="rplB"
                     /locus_tag="ACHDOB_001287"
     CDS             1915..2745
                     /gene="rplB"
                     /locus_tag="ACHDOB_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HFN3326210.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVAAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            2747..3028
                     /gene="rpsS"
                     /locus_tag="ACHDOB_001288"
     CDS             2747..3028
                     /gene="rpsS"
                     /locus_tag="ACHDOB_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HFN3326211.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            3039..3482
                     /gene="rplV"
                     /locus_tag="ACHDOB_001289"
     CDS             3039..3482
                     /gene="rplV"
                     /locus_tag="ACHDOB_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HFN3326212.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKAEEKKTVAKKAPAAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            3482..4183
                     /gene="rpsC"
                     /locus_tag="ACHDOB_001290"
     CDS             3482..4183
                     /gene="rpsC"
                     /locus_tag="ACHDOB_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HFN3326213.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKVGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            4186..4611
                     /gene="rplP"
                     /locus_tag="ACHDOB_001291"
     CDS             4186..4611
                     /gene="rplP"
                     /locus_tag="ACHDOB_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HFN3326214.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            4598..4783
                     /gene="rpmC"
                     /locus_tag="ACHDOB_001292"
     CDS             4598..4783
                     /gene="rpmC"
                     /locus_tag="ACHDOB_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HFN3326215.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            4793..5044
                     /gene="rpsQ"
                     /locus_tag="ACHDOB_001293"
     CDS             4793..5044
                     /gene="rpsQ"
                     /locus_tag="ACHDOB_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HFN3326216.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            5044..5412
                     /gene="rplN"
                     /locus_tag="ACHDOB_001294"
     CDS             5044..5412
                     /gene="rplN"
                     /locus_tag="ACHDOB_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011567679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HFN3326217.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            5412..5645
                     /gene="rplX"
                     /locus_tag="ACHDOB_001295"
     CDS             5412..5645
                     /gene="rplX"
                     /locus_tag="ACHDOB_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HFN3326218.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            5649..6194
                     /gene="rplE"
                     /locus_tag="ACHDOB_001296"
     CDS             5649..6194
                     /gene="rplE"
                     /locus_tag="ACHDOB_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HFN3326219.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            6196..6381
                     /locus_tag="ACHDOB_001297"
     CDS             6196..6381
                     /locus_tag="ACHDOB_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003948630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HFN3326220.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            6391..6786
                     /gene="rpsH"
                     /locus_tag="ACHDOB_001298"
     CDS             6391..6786
                     /gene="rpsH"
                     /locus_tag="ACHDOB_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HFN3326221.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            6865..7401
                     /gene="rplF"
                     /locus_tag="ACHDOB_001299"
     CDS             6865..7401
                     /gene="rplF"
                     /locus_tag="ACHDOB_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HFN3326222.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            7411..7767
                     /gene="rplR"
                     /locus_tag="ACHDOB_001300"
     CDS             7411..7767
                     /gene="rplR"
                     /locus_tag="ACHDOB_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HFN3326223.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            7779..8222
                     /gene="rpsE"
                     /locus_tag="ACHDOB_001301"
     CDS             7779..8222
                     /gene="rpsE"
                     /locus_tag="ACHDOB_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HFN3326224.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            8227..8619
                     /gene="rplO"
                     /locus_tag="ACHDOB_001302"
     CDS             8227..8619
                     /gene="rplO"
                     /locus_tag="ACHDOB_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HFN3326225.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFDSIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            8619..9884
                     /gene="secY"
                     /locus_tag="ACHDOB_001303"
     CDS             8619..9884
                     /gene="secY"
                     /locus_tag="ACHDOB_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HFN3326226.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYVELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
BASE COUNT         3661 a         1346 c         2084 g         2821 t
ORIGIN      
        1 aaaataatag aaaaatttca tcaaattcct tgactttgaa aacaagattt tatatactct
       61 catttcaatt tttataaatt ggttagtttt taactaacga gttcttttta aaggaaatat
      121 tatggaaaga attaggctta agctaaaagc ttatgaccat cgagtactag acagaacagt
      181 tgcagcaatc gtagaagctg ttaaaagaac aggtgcggat atcagaggtc cgataccaat
      241 gcctactaaa atcaaacgct atacagtttt aaaatctcca cacattaaca aagattctcg
      301 tgagcagttt gaaataagaa ttcacgcgcg tatgctagat atagtagcag cgactccaga
      361 tacagttgat tctttaacta agcttgattt agcgccagaa gtaagcgttg aagtaagagc
      421 tatgggtaag taaggataag atatggaata tattgtagaa aaaatcggaa tgagcagaac
      481 aattactaat ccaagtatcg ctgtaacttt actaagagtt gtaaatgcaa aagtatgtga
      541 agttgaaggc ggaaaggctt tagtagcata tccaaaaggt aaagcaagta ataaatgtgt
      601 cgcaggacaa caaaaaaagt ataatctttc tgcagaatac aatagatttg cgactttaga
      661 agtagcaaac actgaagcag gagatttaga tgaaactcca ttaaatgaag caaaaatttt
      721 aaaagtaagc tttaacacta aaggtagagg ttatagcggt gttatgaaaa gacataactt
      781 cgcagggggt ccagcaagtc acggttctag atttcacaga cgccacggat ctattggtaa
      841 tagagaatgg ccaggtcgtg ttcaaccagg tatgaaaatg gcaggacatt atggaaatac
      901 taaagtaacc gttaaaaacg aagttgtatc ttatgatgct gaaaacaaaa ttttagtagt
      961 taaaggtgca gtaccaggtt ataatggtgc tatgggtaaa ataaggattg caaaatgagt
     1021 aaagtagttg ttttaaatga taaattagaa aaagcaggtg aacttgattt accttcaaaa
     1081 tatgcggaag taaatccaca caatctttac ttgtatgtaa aatcttacct tgcaagttta
     1141 agagcaaata cagctcatac taaaggtaga agtgatgtaa gtggtggtgg taaaaaacct
     1201 tggagacaaa aaggtcgtgg cggtgctaga gcgggttcaa caagaactaa cgtttgggta
     1261 ggcggtgcgg ttgcttttgg tccaacaaat gaaagaaact acttccaaaa agtaaataaa
     1321 aaacaaaaaa gattggcgct tgaaagagct ttagcagata aagcagctaa aggtgcgtta
     1381 tttactgctg attctttggc tattgaaagt ggtaaaacaa aagatgcaaa cgctgtgatt
     1441 aaaaaacttg gcgtcaaaga tgctttaatc gttaaagatt tactagatga aaaaacactt
     1501 ttagcttaca gaaatttagc aaattgctat gtagttgatg taagcgaagt aaatgcttat
     1561 ttagtatctg tatttaatgc tgttatcata gaaaaatcag cgttagaatc tattacaaaa
     1621 gagggataat tatggcagat attactgata taaagactat actttacaca gaaaaaagtt
     1681 tgaatttgca agagcaaggt gtcgtagtta ttcaaacttc accaaagatg actaaaacag
     1741 gcttaaaagc ggttttaaaa gagtattttg gtgtaactcc aaaaagcatc aattcattaa
     1801 gaatggatgg aaaagttaag cgttttagag gtcgtttagg tcaaagaaac gattacaaaa
     1861 aattctatgt taagctacct gaaggtgtta gcttagaaaa tacggaggct taagatggca
     1921 attaaaactt ataaaccata tactccaagt agaagatata tcacaggttt aagttctgaa
     1981 gatattacag ctaaaccaag tgtacgctca ctacttgtta aacttccagc acacgcgggt
     2041 cgtaacagct atggaagaat tacaagtcgt cataaagaag cgggtgctaa aaaactttac
     2101 agaattattg attttaaacg tcgtaaattc ggtatagaag gcaaagtaga agcgatcgag
     2161 tatgatccat atagaaattg tagaattgct ttgattgctt ataaagatgg ggaaaaaaga
     2221 tatattcttc aaccacgtgg attaagcgtt ggagatatcg ttgcagctgc tgaaagcgga
     2281 cttgatatta aaccaggtaa tgcaatgaaa cttaaaaata ttcctgtggg tactattgtt
     2341 cataatgttg agttaaaacc aggtaaaggc ggtcaaatga tccgttctgc gggtgcttat
     2401 gcacaactta tgggtaaaga agaaaaatat gttattttaa gacttgcaag tggcgaaatg
     2461 agacaagttt tagctgaatg tatggcaagt atcggcgaag ttggaaatga agaatgggct
     2521 aacgtaacta tcggtaaagc aggtagaaat cgccatagag gtatccgtcc acaaactcgt
     2581 ggttctgcta tgaacccagt agatcacccg cacggtgggg gtgaaggtaa gaaaaattca
     2641 ggccgtcatc cagtaactcc atggggtaaa ccaactaaag gtgcgaaaac tcgtcgtaaa
     2701 aaagctagcg ataagctaat aatttcaaga agaaaaggaa agtaagatgg ctagatcact
     2761 aaaaaaaggt ccttttgttg atgatcatgt aatgaaaaaa gtcatcgctg ctaaaaaggc
     2821 taatgataat aaaccaatta aaacttggtc aagaagaagc acaattactc ctgatatgat
     2881 aggacttaca tttaatgttc ataatggtaa aagcttcatt ccggtttata ttactgaaaa
     2941 tcacatcggt tataaacttg gtgaatttgc tccaacacgc acattcaaag ggcataaagg
     3001 ctctgtgcaa aagaaaattg gtaagtaagg gataagatat gagtaaagca ttaattaaat
     3061 tcataagatt atctccaact aaagcaagat tgattgctag agaagttcag gggatgaatg
     3121 cagaattagc tatggctagt ttaaaattta tgccaaataa aggtgcaaaa tacatcgcaa
     3181 atgcaatttc aagtgcggta gcaaatggcg gctttgaagc aaatgaagtg attgtaaaaa
     3241 gttgtcgtgt ggatgcagct gcggtattaa aaagatttag accaagagct agaggaagtg
     3301 caagtcgtat tagaaaacca acttcacata ttttagtaga agtggcaaaa gcagaagtga
     3361 aagctgaaga gaaaaaaaca gtagctaaaa aagctccagc agctaaaaaa actactacaa
     3421 caaaagctcc agctaaaaaa acaacaagca ctaaaaaagc aacagcgaaa aaggaaagct
     3481 aatgggacaa aaagttaatc caattggtct aagactagga atcaatagaa actgggaatc
     3541 aagatggttt ccgactaaag caaatttagt agaaaatatc ggtgaagatt acaaaatcag
     3601 agctttctta aaaagaaaac tttattacgc aggaatcagt caaattttag tagaaagaac
     3661 tgctaaaaaa cttcgcgtta ctgtagttgc tgcaagacca ggtatcatca tcggtaaaaa
     3721 aggtagtgat gttgataatt taagaaaaga attgcaagat ttaatcggta aagatgtaaa
     3781 tatcaatatc aaagaagaaa gaaaagtagg agcttcagct caacttgctg ctgaaagtgt
     3841 tgcaactcaa cttgaaaaaa gaattgcttt tagaagagcg atgaaaaaag taattcaagg
     3901 tgcgcaaaaa gcaggtgcta aagggattaa agtttcagtt tctggtcgtt taggtggtgc
     3961 tgaaatggca agaacagaat ggtatcttga aggacgcgtt ccacttcata ctttaagagc
     4021 aaaaatcgat tatggttttg cagaagctag aactacttat ggaaacatag gggttaaagt
     4081 atggatcttt aaaggtgaag tattacacaa aggtatgcaa cctgaaaaaa ctgaagaaag
     4141 tgctccagct aaaaagccaa gacgcacaag aaggggtaaa taatcatgtt aatgccaaaa
     4201 agaactaaat atcgcaaaat gatgaaaggg cgtaacagag gttatgctaa tcgtggaaca
     4261 gaatttactt ttggtgaatt tgcattaaaa gcaactgaag caggacgcat taactcacgc
     4321 caaatcgaag cagcacgtat cgctttaact cgttttgtta aaagacaagg aaaaacttgg
     4381 attagagttt tcccagataa gcctttgaca aaaaaacctt tagaaactcg tatgggtaaa
     4441 ggtaaaggtg ctgttgaaga atgggtaatg aatatcaagc caggccgtat catttatgaa
     4501 atggcaggag taagcgaaga aatggcaaga gaagcattga ctttagctat gcataaactt
     4561 ccatttaaaa ctaagtttgt tacaagagag agccaaaatg aaatatactg agattaaaga
     4621 taaaacagca gctgagcttg caacaatgct aaaagaaaaa aaggtgcttt tattcacttt
     4681 aaaacaaaag ctaaaaacaa tgcaacttac taatccaaaa gagattagcc aagtaaaaaa
     4741 agacattgct agaataaata cagcaattaa cgctttaaga taaggataga aaatggcatt
     4801 taaaagagaa attcaaggcg ttgttgttaa aatcgctggt gaaaaaaccg caagtgtttt
     4861 ggttgaaaga aaagtggttc atccaagata tagaaaaatt gttaaacgct ttaaaaaata
     4921 tctaattcat gatgagagaa atgaagttaa agttggtgat actgttgttg cagtagaatg
     4981 cagaccactt tcaaaaagaa aatcatttcg cttaaaatct gtattagcta caggagttga
     5041 gtaatgattc aaagttttac aagacttgca gttgctgaca atagcggtgc aaaagaatta
     5101 atgtgtatca aggttttagg gggtagtaaa agaagatacg ctaccgtagg tgatgtaatc
     5161 gttgcatctg ttaaaaaagc tttaccaaat ggaaaagtta aaaaaggtca agtggtaaaa
     5221 gcggttatcg ttagaactaa aaaagaaatt catagagata atggttcttt gattcgtttt
     5281 gatgaaaatg ctgcggttat tcttgataac aaaagagagc ctatcggaac tcgtatcttt
     5341 gggccagtgg gcagagaagt tagatatggt ggctttatga aaatcgtttc actagcaccg
     5401 gaggtattat aatggcggtt aaattaaaaa tcaaaaaagg tgatagcgtt aaggttatca
     5461 caggtgatga taagggtaaa acaggtaaag ttttagcggt atatccaaaa acacttaaag
     5521 tggtagttga aggatgcaaa atcgctaaaa aagctattaa gccgagcgag aaaaacccaa
     5581 atggtggttt tatcaataaa gaaatgccaa tggatatttc caatgtggca aaagttcagg
     5641 agtaagcgat gatgagatta aaagaaaaat acaatcaaag cattaaacct gcattggtta
     5701 aagaatttga tattaaaaat cctatgctta tccctgtgat cgaaaaagta gttatcagcg
     5761 taggtgctgg tgagttggct aaagatcaaa aagtattgca aaatgttgca gatactattt
     5821 ctttaattgc aggacaaaag gctgtgatta ctaaagctaa aaaatcagtc gcaggattta
     5881 aagttcgcga aggttttcct gtgggtgtaa tggtaacttt aagaaaagaa aatatgtatg
     5941 cttttcttga taaattaatt tctattgctt tgccaagggt gaaagacttt agaggtttaa
     6001 gtagagatgg ttttgatgga cgcggaaact ataacttcgg tcttgatgag cagttgatgt
     6061 tcccagaagt ggagtatgat aaaattttaa gaactcatgg tatgaacatt tctatagtta
     6121 caacagcaca aaatgataaa caggcacaaa agttattaga acttatcggt gtgccattta
     6181 caaaaggaaa gtaagatggc taaaaaatca atgattgcaa aagcggcacg caagcctaaa
     6241 tttaaggtta gagcttatac aagatgccaa atttgtgggc gtccgcattc ggtttataga
     6301 gattttggaa tttgcagagt ttgcttaaga aaaatgggta acgaaggttt gattccaggt
     6361 cttaagaaag caagttggta aggataaaat atgataaatg atattatttc agattcactc
     6421 actcgtatca gaaatgcagg aatgagaaag cttgaaacaa ccaagctttt acattctaaa
     6481 gttgtagaag ctttagttgg aatttttcaa gctaagggct atattgagag ttttaatgtt
     6541 attgaagaag ataaaaagaa atttatcaat gtagttttaa aatacgatga aaaaggtaag
     6601 agtgttatca atgagcttaa aagaatttct aagcctggtc gtcgtgttta taaaggtaaa
     6661 gatgaaatca agcgttttaa aaatggttat ggtactatcg tagttagcac aagtcatggt
     6721 gttttagcta atgatgaagc ttataaagca ggtgttggcg gcgaaatttt atgtaccatt
     6781 tggtaaaaaa tctgcttttt atggcattgg gtatccattc ttttaaaaaa gtagaaatat
     6841 cctagacaaa taaaaaggaa aaatatgtct cgtataggta aacaaccgat tgctattcca
     6901 gcaggagtag aagtaaaatt agaaggaaat ttgcttaaat ttaaaaaagg aaatttagca
     6961 aaagaacttg atactaaagc aaatgtaaat gttgagatta aagataataa tattcttttt
     7021 tctccaaaag gtgaagacag acaaagtaga gcttattggg gaacttacag agctttagct
     7081 tacaatatcg ttgtaggttt aactcaaggt ttttcaaaaa ctcttgaaat caatggagtt
     7141 ggttataaag cagctttaaa aggtaaagtt ttagaactaa gccttggttt ttctcatcct
     7201 attaattatg atattccaga aggaattgaa attgtagtgg ataaaaatac tattgcagtt
     7261 aaaggaagtg ataaacaagt tgtaggtcaa gttgctgctc aaattcgtga atttagaccg
     7321 ccagagccat ataaaggaaa aggcgttaag tattctgatg aacgcattat ccgcaaagct
     7381 ggtaagacat ctaagaagta agggtagaat atgagagcaa atgtattaaa aagaaaacta
     7441 actttaagaa tcaaaagaaa aaaaagaatt agagcgaaaa tttcaggttg tgaaaatttt
     7501 ccaagaattt ctgtatttaa atcgaacaga actctatata tccaagcgat tgatgatgta
     7561 aaagctgtaa ctttagcagc agttgatgga cgcaaacttg gcgttaaagc aaataaagaa
     7621 ggtgctaaaa aaatcgctgc tgaatttgct aaaactttaa aagctaaaaa gatagaacaa
     7681 gctgtttttg atagaaatgg ttatgtatat catggtgtta tcgcagcatt ggctgaatct
     7741 ttaagagaaa atggcattag gctataaggg gtaaatcgat ggaaaaatat aatagagaag
     7801 aatttgaaga agtaatcgtc gatatcggca gagttactaa ggttgttaaa ggtggtagaa
     7861 gatttagatt tactgcttta gttatcgttg gaaaccgcaa aggtttagta ggtgttggtt
     7921 atggtaaggc taaggaagtt ccagatgcta tccgtaaagc tgttgacgat gcgtttaaaa
     7981 atatcgttga agttaaaact aaaggctcaa ctatcgctca cgatgtagag gtaaaatata
     8041 acgcaagtag aattttactt aaaccagcta gtgaaggtac aggagttatc gcaggtggtt
     8101 ctacacgccc tatcgtggaa cttgcaggta ttaaagacat cttaaccaag tctttgggtt
     8161 caaataattc agctaatgtg gttcgtgcta caatcaaagc tttaacaatg ttaaaaggat
     8221 aagaagatga atttaacaaa agcagcgggt tcaacgcata aaactaaaag aattggccgt
     8281 ggtcaaggtt ctggcatggg taagactgct actaaagggg gtaaaggtca aactgctaga
     8341 aaaggttata atgaaaaaag aggttttgaa gggggtcaac aaccacttca aagaagacta
     8401 ccaaaagtag gttttacttc taaaattcaa aaaccttatg tgatcaatgt tgaaaaaatc
     8461 acagctgtaa aagagcttag tgaaattaca tttgatagca ttaaaagtgt tcacaaaatt
     8521 tcaaaatctg tgaataaaat caaattaatt ggtgcaagtg caaaagactt agtatcaaaa
     8581 atcaaagacg agaatattag cgtcaccgga tcaaaataat gaatagagca ttgacgaata
     8641 agattttaat caccttagca tttttgtttg cttatagggt tctggcttat gtgccagttc
     8701 ctggcgtcaa tgctgatgtg attgcggaat tttttaacaa caatcaaaac aatgctttgg
     8761 gtttatttaa tgtttttagt ggtggagcgg ctgaacgctt ttctattatt tctttaggta
     8821 ttatgcctta tattactgct tctattatta tggagcttct tgcagcaact tttccaaata
     8881 ttggtaagat gaaaaaagag cgtgatagta tgcaaaaata tatgcaaatt atccgttatg
     8941 cgactattgt gattactttg gttcaaagta taggcgttgc tataggtttg caaagcttgc
     9001 acggtcgtgg tggtgcaggg gctataatgg tggaagattt aaatatgttt atcgcacttt
     9061 gtgctatttc tatgcttgca ggaactatgc ttttaatgtg gcttggcgaa caaatcacac
     9121 aaagaggtat aggaaatggt atttctttaa tcatttttgc aggtattgtt tcaggtattc
     9181 caagagcgat ttcaggaact gtagggcaaa tcaattcagg cgagatgaat ttcttaaccg
     9241 cttttgcaat ttttgctttg attttaatca ccataggcgt gattatttat gtagaacttg
     9301 gagaaagaag aattcctatt tcttattctc gtaaagttgt aatgcaaaat caaaacaaac
     9361 gcattatgaa ttatattcct attaaactca atcttagtgg ggttattcca ccgatttttg
     9421 ctagtgcgat tttgatgttt ccaacaacga ttttacaaac tagtacaaat ccttatctac
     9481 aagccattaa tgacttttta aatccaaatg gttatttgtt tcatgtttta actttcttgt
     9541 ttgtaatttt ctttgcttat ttttatgctt ctatcgtatt taatgctaaa gatatagcag
     9601 aaaatttgaa aaaacaaggt ggttttatcc ctggaattcg tccaggtgaa ggaacttcaa
     9661 gttatcttaa cgaagtagct tctcgtttaa ctttatcagg ttctatttat ttagggcttg
     9721 ttgcaacctt accttgggtt ttggtgaaat ttatgggtgt accttttcat tttggcggta
     9781 cttctgtact tattgtagtt caagtagcac ttgatacgat gagaaaaatt gaagctcaaa
     9841 tttatatgag taaataccaa actttaagtg cggtaggttt gtaatttaaa attatccaag
     9901 caggaaaaat tt
//
LOCUS       DAZAND010000070         9783 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.070, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000070 DAZAND010000000
VERSION     DAZAND010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9783
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.070"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            112..3066
                     /gene="cas9"
                     /locus_tag="ACHDOB_001304"
                     /gene_synonym="csn1"
     CDS             112..3066
                     /gene="cas9"
                     /locus_tag="ACHDOB_001304"
                     /gene_synonym="csn1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004520 - DNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HFN3326227.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQ
                     SVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKILNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDA
                     EIECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKLSDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSTKWQKIEVLAKNLPEKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSAKDRNNHLHHAIDAAIIAYANNSIVKAFSDFKKEQESNSVELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTS
                     STVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVT
                     KAEFRQREDFKK"
     gene            3063..3953
                     /gene="cas1"
                     /locus_tag="ACHDOB_001305"
     CDS             3063..3953
                     /gene="cas1"
                     /locus_tag="ACHDOB_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004520 - DNA endonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA];
                     GO_process: GO:0051607 - defense response to virus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HFN3326228.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFVLKKHNKIGQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            3946..4377
                     /gene="cas2"
                     /locus_tag="ACHDOB_001306"
     CDS             3946..4377
                     /gene="cas2"
                     /locus_tag="ACHDOB_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HFN3326229.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF"
     repeat_region   4523..4954
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=4523..4558
                     /rpt_unit_seq="attttaccataaagaaatttaaaaagggactaaaac"
     gene            complement(5070..6260)
                     /locus_tag="ACHDOB_001307"
     CDS             complement(5070..6260)
                     /locus_tag="ACHDOB_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HFN3326230.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNVEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEILENESLVDI
                     IFMP"
     gene            complement(6264..6710)
                     /locus_tag="ACHDOB_001308"
     CDS             complement(6264..6710)
                     /locus_tag="ACHDOB_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HFN3326231.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFDEWQKRVDFDDISLLFAHSIGDVAVHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            complement(6711..6932)
                     /locus_tag="ACHDOB_001309"
     CDS             complement(6711..6932)
                     /locus_tag="ACHDOB_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HFN3326232.1"
                     /translation="MIKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            complement(6934..8475)
                     /gene="cueO"
                     /locus_tag="ACHDOB_001310"
     CDS             complement(6934..8475)
                     /gene="cueO"
                     /locus_tag="ACHDOB_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HFN3326233.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     KERIYRFEIPQDSAGTYWYHPHPHYTTSKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGK
                     SESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            8599..9747
                     /gene="nspC"
                     /locus_tag="ACHDOB_001311"
     CDS             8599..9747
                     /gene="nspC"
                     /locus_tag="ACHDOB_001311"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0045312 - nor-spermidine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HFN3326234.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKVFKEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSLRN"
BASE COUNT         3552 a         1383 c         1584 g         3264 t
ORIGIN      
        1 attataaaat taacatatat agtttggtta ctgaaaagtt tatgtttgtt taaaaaaatg
       61 atttttgtat tataattata cacaaatcat aaatattaaa aaggatctag tgtggcaaga
      121 attttggcat ttgatatagg aataagctct attggctggg catttagtga aaatgatgag
      181 ttaaaagatt gtggagttag gatttttaca aaggctgaaa atcccaaaac aggagaatcc
      241 ttagccttgc caagacgcct tgcaagaagt gctagaaaac gccttgctag acgcaaagca
      301 aggctaaatc acttaaaaca tttaatcgca aatgaattta agttaaatta cgaagattat
      361 caaagctttg atgaaagttt agccaaggct tataaaggat ctttaattag cccttatgag
      421 ttaagattta gagctttaaa cgagctttta agtaagcaag attttgcaag agtgatttta
      481 catattgcaa aaaggcgtgg ctatgatgat attaaaaata gtgatgataa agaaaaaggt
      541 gcgattttaa aagctatcaa gcaaaatgaa gaaaaactag caaattatca aagtgtgggc
      601 gagtatcttt ataaagagta ttttcaaaaa ttcaaagaaa attccaaaga atttacaaat
      661 gttagaaata aaaaagaaag ttatgaacgc tgcatagcgc aaagtttttt aaaagatgaa
      721 ttaaagctta tttttaaaaa acaaagagaa tttggctttt ctttttcaaa aaaatttgaa
      781 gaagaggtgc ttagtgtagc attttataaa agggctttaa aagatttttc tcatttggtg
      841 ggaaattgta gtttttttac cgatgaaaaa agagcgccaa aaaattcgcc cttagctttt
      901 atgtttgtag cacttacaag aattatcaat cttttaaaca atcttaaaaa tactgaagga
      961 attttatata caaaagatga tttaaacgcc cttttgaatg aagttttaaa aaacggcact
     1021 ctaacttata aacaaacaaa aaagcttttg ggcttaagcg atgattatga atttaaaggg
     1081 gaaaaaggaa cttattttat tgagtttaaa aaatataaag aatttataaa agccttaggt
     1141 gatcatagtt taagccaaga tgatttaaat gaaatagcaa aagatatcac tcttataaaa
     1201 gatgagatta aacttaaaaa ggctttagca aaatacgatt taaatcaaaa tcaaattgat
     1261 agcttaagca aattggaatt taaagaccat ttaaatataa gttttaaagc cttaaaactt
     1321 atcactcctt taatgcttga aggtaaaaaa tacgatgaag cttgcaatga gcttaattta
     1381 aaagtagcaa tcaatgaaga taaaaaagac tttttacccg catttaatga aacttattac
     1441 aaagatgaag taactaatcc tgtggtttta agggcgatta aagaatatag aaaaatctta
     1501 aatgccttac ttaaaaaata cggtaaagtg cataaaataa acattgaatt agcaagagaa
     1561 gtaggtaaaa atcacagcca aagagctaaa atagaaaaag agcaaaacga aaactacaag
     1621 gccaaaaaag acgccgaaat tgaatgtgaa aaactaggct taaaaataaa tagcaaaaat
     1681 attttaaaat taagattatt taaagaacaa aaagaatttt gtgcttatag tggagaaaag
     1741 attaaactta gtgatttgca agatgaaaaa atgcttgaaa ttgaccatat ttacccttat
     1801 tctagaagtt ttgatgattc ttatatgaat aaagttttag tttttaccaa gcaaaatcaa
     1861 gaaaagctta ataaaacccc ctttgaagcc tttggcaatg atagtacaaa atggcagaaa
     1921 attgaagttt tggcaaaaaa tttacctgaa aaaaagcaaa aaagaatttt agataaaaat
     1981 tacaaagaca aagagcaaaa agactttaaa gatagaaatc taaacgatac tcgctacatc
     2041 gcaaggcttg ttttaaacta cactaaagat tatttagatt ttttaccttt aagcgatgat
     2101 gaaaatacaa aattaaacga tacgcaaaaa ggctcaaaag tgcatgtaga agcaaaaagc
     2161 ggtatgctaa catcggcttt aaggcacact tggggcttta gcgctaagga tagaaacaac
     2221 catcttcatc acgccatcga tgcagcaatt attgcttatg caaacaattc tatcgtaaag
     2281 gctttttcag attttaaaaa agagcaagaa agcaacagtg tagaacttta tgcaaaaaaa
     2341 attagtgaat tagattataa aaacaaaagg aagttttttg agccttttag tggttttagg
     2401 caaaaggttt tagataaaat tgatgaaatt tttgtctcaa aacctgagag aaaaaagcca
     2461 agtggagctt tacatgaaga aacatttaga aaagaagaag aattctatca atcatacggc
     2521 ggaaaagaag gagttttaaa agccctagag cttggtaaaa tccgcaaagt aaatggtaaa
     2581 attgttaaaa atggcgatat gtttagagtg gatattttta aacacaaaaa gacaaataaa
     2641 ttttatgctg tgccaattta tactatggat tttgctttaa aagtattacc aaataaagct
     2701 gtagcgcgaa gtaaaaaagg tgagataaaa gactggattt taatggatga aaattatgag
     2761 ttttgctttt ctttatacaa agatagtttg attttaattc aaactaaaga tatgcaagag
     2821 ccagaacttg tttattttaa tgcttttaca agctctactg ttagtttgat tgtttcaaaa
     2881 cacgataata aatttgaaac gctaagcaaa aatcaaaaaa tattgtttaa aaatgcaaat
     2941 gaaaaagaag taatcgcaaa aagcatagga attcaaaatc taaaagtatt tgaaaaatac
     3001 atagtttcag cacttggaga agtgacaaag gctgagttta gacaaagaga agattttaaa
     3061 aaatgagtta cgatgaagct tttaaaacac tgcttattag ctctaatgcc aagctaaatt
     3121 tagagctaaa tcatcttgtg attaagcaag atgaaaatat agccaaattg tttttaaagg
     3181 atataaacat catcgtttta gaaagcttac aagtaagcct tagttccgca ctttttaacg
     3241 cttttgcaag gcataaaatt atcttattaa cctgcgatga aactcatagt ataaatggtg
     3301 tttttactcc ttttttaggg cattttcaaa gtgcaaaaat cgcaaaagag caaatgaatg
     3361 taagtgctca aaaaaaggct attttatggc aaaaaatcat taaaaacaaa atcctaaatc
     3421 aagcctttgt tttgaaaaaa cacaataaaa tagggcaaag caatgagctt ataaatttgg
     3481 ctaaaaaagt aagcttaaat gatagtaaaa atatcgaagc tgttgcagcg gcgctttatt
     3541 ttaaaacttt gtttggcgtt tctttttcaa gagatgagct ttgctttgaa aattctgctt
     3601 taaattatgg ctatgcaatc attagggctt gtattattag agcagtttgt ataagtgggc
     3661 ttttgccttg gcttggcata aagcacgata atatttataa ttcttttgca ctttgtgatg
     3721 atttgataga agtgtttagg gctagtgttg atgattgtgt tttaaagctt aagggtgaaa
     3781 gtgagttttt aagcaaagat gacaaaagag cgttgattgg caatttacaa agcaaaatca
     3841 attttgatgg gcaaaattat cctttaaaca gagcgataaa tcattatgtg gcgaatttta
     3901 aaaatgcttt attgtatgaa gatgagctaa agatagtgaa atttgatgat tgaagataaa
     3961 tttatgcgcg tgcttttgat gtttgatgta cctactaaaa gtaaaaaaga gcaaaaacta
     4021 gcaagtaaat ttagaaacaa tcttataaaa ttaggttatt ttatgctgca atttagcgtt
     4081 tatatgcgta tttgcaaggg tttaagttct gcaaaaagtt ctattgaaaa tgtaaaaaag
     4141 attttgccac cttatggaaa tgtaagggct ttaatcatca ctgaaaagca atttgataaa
     4201 atggagcttt tgcttggtgg catagttttt aatgaaaaag ttaataacga aactaattta
     4261 acgctttttg atatagatag tcatggagaa tttaaataca aaaattcaaa taatgaagaa
     4321 atacaactaa acaaaaaaca agaaaaatat catcagcaaa atttatttga attttaaaag
     4381 cggttttagg ggattgtaac cccgcagagt cccgcaaact ctttatttta gtcccttttt
     4441 aaatttctta ttgagattat agcataattt ttgctatttt tcatgaaaaa accccgaaat
     4501 tttcattatc tggtaaatat ctattttacc ataaagaaat ttaaaaaggg actaaaacaa
     4561 aatcttgcaa atatcactta aacaaaatat tttaccataa agaaatttaa aaagggacta
     4621 aaacgaatac aactcgttat ctaacattaa tcttatttta ccataaagaa atttaaaaag
     4681 ggactaaaac cgtcgttatt aaacccgcaa cctcatcttc attttaccat aaagaaattt
     4741 aaaaagggac taaaacatat gattaaagat gttgatgttt caaaaaattt taccataaag
     4801 aaatttaaaa agggactaaa acttattaaa aacaaaaact tgataactca taattttacc
     4861 ataaagaaat ttaaaaaggg actaaaactc caaagcgttt taaagcattt cctaaagcat
     4921 tttaccataa agaaatttaa aaagggacta aaaaccctag tggattgaaa ctctgctagg
     4981 gctaattact tcactaaaag gaggtgcaaa tttgaaactt attgaaattt agggttgatt
     5041 aaaatcgaaa taaaattatt taaataattt taaggcataa agataatatc tactaaactt
     5101 tcattttcta aaatttcaca ttcttttggt actaccataa gggcagcttt attgttaaga
     5161 ttgtttataa tcgcactaga gccttctttc ttaccttcaa gattggctaa aatgcgtcca
     5221 tttttaaatt ccacattaca agcgacaaat tccaaataag gtgttttttt cttgtagctt
     5281 ccttgtaaaa aggctttgca aatatagtct ttaggctgaa gtaaccaaga gtttaaaatc
     5341 tctcttgcgt aaagattaaa cattaccata gccgagtaag gaaaacctgg taaggcgatg
     5401 atgaattttt cattagcctt ggctattttg atatgtctac ctggttttat gtcggcttta
     5461 tcgatgatga tttcgtattc ttttacagct ttttttaaaa agtcaaaatc tcccatagaa
     5521 actccgcctg ttgtaatcaa aatatcacaa ctttgcaaag cactttcaag ggtagaaaaa
     5581 gtggcttttt catcatcttt taaaagtgga aaaacccttg tatcgcaatt taaattttta
     5641 gctaaattag ctatggcgat atgatttgaa gagcggattt gagcaggatt ttccaaggct
     5701 tctcctagat ctttgatctc acttccacta cttaaaaccc ctacaatagg ctttataaac
     5761 acactaatgt gaaaaaatcc aagttcagcc aaaagagcta tttcgctata atttaacttt
     5821 gtgccttttt tgagtaaaat ttcatctttt ttatagtttt ctcctactgc acgcacggca
     5881 aaagcttggg gaactttttt ttctataaaa agagtatcat tttctacgcg tacattttca
     5941 acagggacta aagtatcact tccttcactc ataagtgaac ctgtaaaggt ttttacacaa
     6001 gtaccatttt gcacgctaaa ttgtggcata gtgcctgcag gtgtgaggcc taaaattttt
     6061 aaaggcttat cttgatcttc aaatttgatc gcataaccat ccatagccga agttggaaat
     6121 tcaggctgat ttttaggggc ttttatgtct tgagctaaaa tgcgtcctaa acactctgta
     6181 agagctattt tttcaatctt ttcataagtt ttgatatgag agtgtaaaat ttttaaactt
     6241 tcttcataag acattaacat tttttatcct tttaaaagtc ctgcaccgca aagtttggtt
     6301 gatctttctt tggcataaat tctttctttg tttatcacat catacttcca aataggtgca
     6361 cttgctttaa aatcttcaac aaattcatta agaagtttaa gtcctaattt tctttgtttg
     6421 cttaaaattc ctgcaaaata agagctttca tgaaccgcca catcgcctat agagtgagca
     6481 aaaagcaagc taatatcatc aaaatctact cttttttgcc actcatcaaa ccattttttt
     6541 aaaagcggtt cataaatatc aaaactaagt gcctcaatgc ctccttcttc acgcacaata
     6601 ccacaaaaag tcagcaaagc accgcagttt ttatccttgg caaattcata ccattggcta
     6661 taaattttag gaatatctaa agaaccttga tagagtgtaa aatgtttcat ttaaccccca
     6721 caaactggcg gtaaaagtgc tattttatca ccatctttta acttagtgtt ttcatcaaaa
     6781 atgatttcat cgtttaaaga tacggcacaa agttctagcc attcttttaa actctcatct
     6841 ttttgcaaaa tttcttttaa ttcttttaaa ttttttacct caagctctaa attttcttta
     6901 tttatggggc ctaaaaattc cacttttatc attttattcc tttacttcta aatttcccat
     6961 cattcctaaa tcttcatgtt ctaaaatatg acaatgatac attctaagtc ctttaaaatc
     7021 ttgtttcatt ctaagtctta actcttcatt aggacgcaca tttatagtat ctcttaaggc
     7081 tctaaattcg gctttttgaa ctttgccatt gagttttgat gagatgagtt caaattgcgt
     7141 gccgtgtatg tggaaaggat gatccatgtg agatttgttt atcactatcc agtcttcaac
     7201 tactccaagt ttggagctta aatcaatgcg ttttaaatca tagcttttgc cattgattaa
     7261 aaacatagac gcaagagcga tttttaattc gctttcactt tttcccatca taccatgcat
     7321 ttgcatatga tcttcactca tgattatttc tttaaattcc ttaggttctt ctgaaggttt
     7381 gaaaattttt aaattttttg gaagttctac attttctttt tttagactaa tattagctaa
     7441 aaatagggta ttaggttctt cttttaccat cattttatcc ctatcataat aagcactttc
     7501 tagcttaaaa ttcccatctt ttggagcgtc gattaaaact tctacgcgag aagcaggact
     7561 taagaaaagt tcttctttat aaatagcttt ttctataagt ccaccatcag taccaacaag
     7621 tataaactta gctccttgta tgcgtaaatt taaatatctt gctgcagtag cattataaat
     7681 gcgtatgcgt tcgtttgtgg cgagtttgat tttaggttta aattgtccat taatgagtac
     7741 aaattctcct tctctaccat ttagccaatc atttaggttg ttgttcggaa tttgagcgtt
     7801 ttcatcaaga cgcaaatcgc taatcatcaa atctttttct tttaaatgac ttaaagcatc
     7861 tttttttgct ttgatcacaa aagcccctgc taagcccata aaaacttgtt tagaagtggt
     7921 ataatgaggg tgtggatgat accagtaagt tcctgcgcta tcttgaggaa tttcaaaacg
     7981 atatattctt tcttttcctg ctaagatagg atcatgtggg cttccatctt gatcaggtgg
     8041 cacaggaacg ccatgccaat gtatagttgt agcttccttg agtttgtttt tgactaaaat
     8101 ttcaagttta tctccttcaa aaacttctat ttttggagca ggtactagac cattgtaagt
     8161 ataaaataag gtttttttac ctttgataag ctctatatga ttttctttga tttctagggt
     8221 agcacgaaaa atattttttt ctttactttc atttttgagc aaaggcaagg cttttaaaat
     8281 ttctccttgg gggaattgtt ttggatctaa aagttttaaa ttttttggag caaagttgat
     8341 aaaagaagta tctaagtcat gatttataga atgattttta tgcatagagt gcatatcgtg
     8401 cataggattt gcataggcta cacccatact tgctagagta agtgcattaa attttaaaaa
     8461 atttcttcta ttcattagtt tttccttttg cttgattttt tgtattatag tcattatttt
     8521 tttagtttta gtaaatattt attttgaaaa tttgatttaa ttttgttatg attttagcaa
     8581 tttaatcaag gaaaaataat gttttatgaa aaaattcaaa ctccagctta tattttagaa
     8641 gaagataaat taagaaaaaa ctgtgagctt ttagcaagtg ttggtgaaaa aagtggtgct
     8701 aaagtgcttt tagctttaaa aggttttgct ttttcaggag cgatgaaaat tgttggagaa
     8761 tacctaaaag gttgtacttg tagcggactt tgggaagcaa aatttgctaa agaatacatg
     8821 gataaagaaa ttcatactta ttcacctgct tttaaagaag atgaaatagg tgaaatagcc
     8881 agtttatctc atcatatagt gtttaattct ttagctcaat ttcataaatt tcaaagcaaa
     8941 acacaaaaaa attccttagg tcttcgttgc aatgttgaat tttctctagc cccaaaagaa
     9001 ctttacaatc cttgtggaag atactcaaga cttggaattc gtgctaaaga ttttgaaaat
     9061 gtggatttaa atgctataga aggacttcat tttcacgcac tttgtgaaga aagtgctgac
     9121 gctttagaag ctgttttaaa ggtctttaaa gagaaatttg gtaaatggat agggcaaatg
     9181 aaatgggtga attttggagg aggacatcac atcaccaaaa aaggctatga tgttgaaaaa
     9241 cttattgctt tgtgtaaaaa tttcagcgat aaatatggtg tacaagttta tcttgaacca
     9301 ggtgaagcgg taggttggca aacaggaaat ttggttgcta gtgtagtaga tatcatagaa
     9361 aatgaaaaac aaattgccat tttagatact tcaagcgaag cacatatgcc agatactatc
     9421 atcatgcctt atacaagtga agttttaaat gctagaattt tagccacaag agaaaatgaa
     9481 aaaatttcag acttaaaaga aaacgaattt gcctatttac ttactggaaa tacttgttta
     9541 gcgggtgatg taatgggaga gtacgctttt gataaaaagc ttaaaatcgg cgataaaatt
     9601 gtttttttag atcaaattca ttacaccatt gtgaaaaaca caacttttaa tggtataaga
     9661 cttccaaatc tcatgctttt agaccataaa aatgaacttc aaatgataag agaattttct
     9721 tataaggatt attctttaag aaattagtat tatttataat ttgcataaaa tattaatttt
     9781 act
//
LOCUS       DAZAND010000071         9779 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.071, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000071 DAZAND010000000
VERSION     DAZAND010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9779
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.071"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..134)
                     /locus_tag="ACHDOB_001312"
     CDS             complement(<1..134)
                     /locus_tag="ACHDOB_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326235.1"
                     /translation="MEHKKALFCIFAIIHLFFWIIFSSLNHFKLDTFLSYEIAFFSVL
                     "
     gene            complement(134..463)
                     /locus_tag="ACHDOB_001313"
     CDS             complement(134..463)
                     /locus_tag="ACHDOB_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HFN3326236.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            complement(460..1734)
                     /gene="hemL"
                     /locus_tag="ACHDOB_001314"
     CDS             complement(460..1734)
                     /gene="hemL"
                     /locus_tag="ACHDOB_001314"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HFN3326237.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            complement(1731..2078)
                     /locus_tag="ACHDOB_001315"
     CDS             complement(1731..2078)
                     /locus_tag="ACHDOB_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFN3326238.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            2158..3006
                     /gene="folD"
                     /locus_tag="ACHDOB_001316"
     CDS             2158..3006
                     /gene="folD"
                     /locus_tag="ACHDOB_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HFN3326239.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            3016..3864
                     /gene="lepB"
                     /locus_tag="ACHDOB_001317"
     CDS             3016..3864
                     /gene="lepB"
                     /locus_tag="ACHDOB_001317"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HFN3326240.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPTYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3886..5046)
                     /gene="moeA"
                     /locus_tag="ACHDOB_001318"
     CDS             complement(3886..5046)
                     /gene="moeA"
                     /locus_tag="ACHDOB_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HFN3326241.1"
                     /translation="MKNIFETLKDLEDQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKAPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNTNALSLLTMLQNTSYLGIIKDNF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GKNFVLILPGNPMAAYLSCFIFAKKIIALLSGNLDNPLKFHATMGMDLKLKSGRNNLI
                     LGNLEKDIFTPFNENKFGSGMILPLIKSEFLLISEENTSELKKGDEITLLKI"
     gene            complement(5043..6299)
                     /gene="murA"
                     /locus_tag="ACHDOB_001319"
     CDS             complement(5043..6299)
                     /gene="murA"
                     /locus_tag="ACHDOB_001319"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0019277 - UDP-N-acetylgalactosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HFN3326242.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGTD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     AEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKGLGAKITRLEE"
     gene            complement(6365..6793)
                     /gene="fspA1"
                     /locus_tag="ACHDOB_001320"
     CDS             complement(6365..6793)
                     /gene="fspA1"
                     /locus_tag="ACHDOB_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellum-secreted nonflagellar protein FspA1"
                     /protein_id="HFN3326243.1"
                     /translation="MQINNSLNSLSQYVKVNSNEENQNSKNQEQNALAQDPAVEVNIS
                     KEAKEKSNTSNQNNSQAPAQALNAQNNTQQDSSSDSEDKLTELTQKLAEIQAKIVELT
                     AKMSKANEDQIKSIESQIATLNAQASTIQAQIQELQSQQA"
     gene            6888..7760
                     /locus_tag="ACHDOB_001321"
     CDS             6888..7760
                     /locus_tag="ACHDOB_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFN3326244.1"
                     /translation="MGVFLVLLGGIFWAISGVLAEYLFKNNYSVDWVCFYRLLSTGLI
                     LIFLSFKAQKILVFTNLKESLSICMFGFFGLLLTQFGYFKAIYYTDAGTATMIQYCAP
                     LIIMLYLCFKNKKFPKLIEIFALILIIFALFLLATKGDIEAVVLNYWGIFWAVIGAFG
                     VAFYSLSAREVILKYGLFWIMGWASLFASFVFLLILQFDKGLIHYAFNLKAFFSMGGI
                     VFIGTIGAFCLYLKGVEYIGALRASMIASIEPVAAALMSFLFLKTRYSLLDIFAFVLI
                     ILSVILNAKKTKAS"
     gene            complement(7747..8313)
                     /gene="pabA"
                     /locus_tag="ACHDOB_001322"
     CDS             complement(7747..8313)
                     /gene="pabA"
                     /locus_tag="ACHDOB_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HFN3326245.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKYFKKNKKILGICLGHQCIAEIFGGRVSKMQNP
                     MHGKISKLYFKKDPIFKGIKKEIEICLYHSLHISSMPKKCKILAHNSENIIMAIKHKK
                     YPIYGLQFHPEAVLTQKGKKILKNFMKL"
     gene            complement(8310..>9779)
                     /locus_tag="ACHDOB_001323"
     CDS             complement(8310..>9779)
                     /locus_tag="ACHDOB_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate-binding protein/class IV
                     aminotransferase"
                     /protein_id="HFN3326246.1"
                     /translation="NFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDT
                     EFKAFIKDETREILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKTFLQNDT
                     KNLSENVMICDLLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQ
                     IFKALFPCGSITGAPKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQ
                     DEIYTYSTGSGLVWDSKFKDEFEELKLKSAILNPCDFHLFETIYFKNSQILFLKEHLL
                     RLINSALKFNFNTHKLFKDFYNILNQKSSYKEYQNFTLFKLDEKIFHKKHSLFYNFPL
                     PFKNPHKEGILKLILYKDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRT
                     FYNQHSYKWQQNLCYDIAFFNEKDELCEGSRTNLILEKNTQFYTPQIQSGMLNGVYRN
                     FLINLGLIKEKALFKQDLFEAENIYCINSVRGLKKVKLQ"
BASE COUNT         3069 a         1424 c         1573 g         3713 t
ORIGIN      
        1 aataaaacac taaaaaaagc tatttcatag cttaaaaatg tatctaattt aaaatgattt
       61 aacgatgaaa atatgatcca aaaaaataaa tgaataatgg caaaaataca aaatagagct
      121 tttttatgtt ccattatttg ttcttttctt tttgaatttt ttctttgatc aactcatctc
      181 tttctttaaa ttcttcatag ctttttactt gaactttata agctttgtaa acattaagta
      241 tggcagcact gatcccccaa aaaactccaa gccaaaaaag ccaaggataa ggagtaaatt
      301 ttttaagtaa atatcctatt cccacaccta taaatacagc aacaaccata gagatgccaa
      361 gacttaaacc atccgcagct tcaagagttt tgcgaatgat tttttgtctt ttgctgttgg
      421 aattttctaa gtgatttttt tcttctttta aaatattact catattcttt taaagctttc
      481 cctaacagcc tctagtgttg tatctataat tttatcatcc atttttgaac atataaagcc
      541 tgtttcaaat tgagaaggtg ctaaataaat tccattttca agcatatttt tgtgaaattt
      601 tgaaaataat gctagatcag attttaatgc atcttggtag tttgatacag gatctttggt
      661 gaaaaagtat ccaaacatag aacctacatg acaagcttgc agcggaagtc ctttttcatc
      721 tgctaatttt ttcattcctt gggtaagttt ttttgctaat tttccaagtt tgtcataaag
      781 cttggttttc tttttggctt ttgtaagact tgctatacct gcagccattg ccaaaggatt
      841 tccacttaaa gttcctgctt gataaactcc acccaaagga cttaaaatat ccataatttc
      901 agctctagaa gcaaatgctg ctgcaggtag accgcctcct attaccttac caaaagtaat
      961 tatatctgct tggatatgat tgattccata ggaaccaagg taagatgctc tatatccact
     1021 cattacctca tcaaaaatca gcagagtttg attgttttta cagatcttag caagttcttc
     1081 taaaaaatct tgtttagctg gaactaaccc catatttcca gcaataggct caatgataac
     1141 acatgcaata tctttatttt tttcaaaaag ctctttaacg ctatttatat cattatattt
     1201 agctactaaa gtgtgtttag ctacatcttc taaaacaccc aaagaactag gagagttaaa
     1261 agtagcagca ccacttcctg cactcactaa taatgaatca gaatgcccgt gataacatcc
     1321 ttcaaatttt aaaattttgt cttttttagt aaaaccacgg gcaagacgaa tagcactcat
     1381 ggttgcttct gttccactgc ttacaaagcg gatcttttct aaatgaggaa aatcagataa
     1441 aacaagcttg gcaagttcag tttctaataa agttggagct ccaaaacttg aacctttatg
     1501 aagtgctttt tgacaagctt tttgtatatc tttatcgcaa tgtccaaaaa gtaaaggccc
     1561 ccagctttga acatagtcta tataagaatt tccatctata tcgaaaatat aagcaccttt
     1621 tccatgagaa ataaattttg gctcactttg aacatttgca aaagcacgaa ctggagaatt
     1681 tacaccgcct gcgatgaatt tacacgcttc tttaaaagct tttttgtttg tcatttttct
     1741 tccttgctaa attgcttgat gtaattatat aaagttacaa tttcatcatt tgttaaagag
     1801 taatttggca tgattgattt tgcgtcttta ctctgattaa gagaattttt aaaattctca
     1861 aaactaagat tttgtatact tggaacttta taagctgttt taataccatt tttcatataa
     1921 tatcctaaaa tttgttcgct tccatctgct ccatgacatt ctttacaact aatgcccctt
     1981 ggattttcat aaagcatttt agagtattct ttaagagtga taaaatcagc accaaaaaga
     2041 ctgatactaa ataaaaaaaa cattaaaaca attttcaaag tttcaccttg ttaatgaagt
     2101 tttaatatga tacaattttt actttaaaaa agtgattaaa tttatagaag gaaaataatg
     2161 actttgcttg atggtaaagc tttaagcgca aaaatcaaag aagaattaaa agaaaaaaat
     2221 caatttttga aaagcaaagg gattgaaagc tgtttagctg ttatcttagt tggagataat
     2281 cctgcaagtc aaacttatgt aaaatctaag gctaaagcct gtgaagaatg tggaattaaa
     2341 tctttagttt atcatcttaa tgaaaatact acacaaaatg aacttttggc attgattaat
     2401 accttaaatc acgatgatag tgttcatgga attttggttc agcttccctt acctgatcat
     2461 atttgtaaag atttaatact tgaaagtatt ataagtagta aagatgttga tggctttcat
     2521 cctattaatg taggatattt aaatttaggc ttagaaagtg ggtttttgcc ttgtactcca
     2581 cttggagtta tgaagctttt gaaggcttat gaaattgatt tagaaggaaa agacgctgtt
     2641 attataggtg cttcaaatat agtaggtcgt cctatggcta ctatgctttt aaacgctgga
     2701 gctacagtaa gcgtttgtca tattaaaacc aaagatttga gcctttatac taggcaagct
     2761 gatttgatta tagtagcagc aggttgtgtg aacttacttc gatcggatat ggtaaaagaa
     2821 ggagtgattg ttgttgatgt tggaatcaat cgtcttgaaa gtggaaagat agttggagac
     2881 gtggattttg aagaggtatc taaaaaatct agttatataa ctcctgttcc aggtggagta
     2941 ggtcctatga ctatagccat gcttttagaa aacacagtta aatctgctaa aaatagactt
     3001 aattagggaa aatctatgga aattttaaag aaattatata aattttcaca gtcttggact
     3061 ggaactgtag ttattgttct tttggtgatt tttttcttta tacaagcttt tgttattcct
     3121 tctggttcta tgaaaaacac cttgttggta ggggattttt tatttgttaa aaaatttagc
     3181 tatggtatcc caactcctca tattccttgg ttggaaattc ctgttttgcc tgattttaat
     3241 aaagatgggc atttgataaa agcacaaggg ccacaaagag gagatatagt tgtttttaga
     3301 aatcctagaa atgaaaaaga acactttgta aagcgttgtg taggcacagg aggagatagg
     3361 atagtttatg caaataaaac actttatgta agaatgcatg agggtgatga atttatgaaa
     3421 gaacattatc cgaatgatct tgttactctt ggagggcaaa tttatgtaaa agaaccttat
     3481 aaacaaaaag gtattcatta tgatccaaaa aaagatatag aaagcgatat tttacgcttt
     3541 cttagcatag gtgattttgc catgtctcca acttatatta aagaacttgg aaatcatata
     3601 ggttttagcg gcggaaatgc ttatgttttt gatgtacctg aaaatgagta tttcatgatg
     3661 ggtgataatc gcgattattc ttatgatagt cgtttttggg gttctgttcc ttataggttg
     3721 atagtaggta aaccttggtt tgtatatttc tcttgggata aagataaaaa tgttcgctgg
     3781 gaaaggatag ggcgttttgt tgacaccttg gaaaatgatg aacaatatat ccatgatcat
     3841 gatgatgagg ataaattaag ctaatgtttg tgaaaaacac aaacattata tttttaaaag
     3901 cgtgatttca tcaccttttt ttaattcact tgtattttct tcgcttataa gtaaaaactc
     3961 acttttaata agtggaagta tcataccaga tccaaattta ttttcattaa atggtgtaaa
     4021 aatatctttt tctaaatttc ctaaaatgag attgtttctt ccacttttaa gctttaaatc
     4081 catacccatt gtagcatgaa attttaaagg attgtctagg tttccactta ataaagcaat
     4141 aattttttta gcaaaaataa aacaagaaag ataagctgcc ataggatttc ctggtaaaat
     4201 caatacgaaa tttttaccct ttctataaag tttagtaggt cttgcagggc gtgcttttag
     4261 tcctttaaaa agcggagtaa agcctaattc atctaaagct ttttccataa aatcagcctc
     4321 gccaacgctt gcacctcctg aagtgattaa aagatcaaaa tttgtatttt ctaaagcttc
     4381 tttagtgctt ttaaaattat ctttgatgat gcccaaataa gaagtatttt gaagcatggt
     4441 tagtaaagac aaagcattgg tattataaat actttcttca tcgcattctt gccaaggttc
     4501 ttttagctca tttccacttg aaaaaatacc tatacgaatt tttcttatga cttctatttt
     4561 ataaagccct tgagaagcaa gcagggcgat atgtttatca ttaagtttgg tgcctttttg
     4621 aagtaaaatt tcaccttttt ttaattcttc gcctttatag cgataggcat tgtattgttt
     4681 aggagctttt ttaatgatga gtttattttc ttctatatac tcatcttcta acattaagat
     4741 agtatcagca tttttgggca ttttagcccc tgtcatgatt ttatagcatt catttttagc
     4801 aactgtataa aaatttttat ctcctgcaaa aatagtccct ttaatctcca aagcttcatt
     4861 gatatcagta taattaaaag catagccatc aagagcagca ttgtcaaaac tgggtagatt
     4921 ttttctagcg tataaatctt tagctaaaat tctatctttt gctttttcaa ggctaataag
     4981 ttcactttca tctaagcatg aaatttgatc ttctaagtct tttaaggttt caaagatatt
     5041 tttcattctt caagccttgt gattttagcc cctaagcctt taaatttttc ttctaaattt
     5101 tcataacccc tatcaagatg ataaattcta tggactttgc ttgtgccttt agctgcaaga
     5161 gctgctaaga taagggctga agaagcacgc aaatctgtag ccatgacatc agcagcgtta
     5221 agttcttttc cgcctactat agtagcaata tgaccgttga gtttaatatc cgcacccatt
     5281 cttaaaagtt cacttacatg catgaaacga ttttcaaata gtctttcatc gataatacta
     5341 gttccattag cttttaaggc taatgccata aactgcgctt gcatatcggt tggaaagcct
     5401 ggatattcac ttgtcatgat ttctacaggt ttaatttctt tagcaggaag tagggtgata
     5461 ctatcttctg caatcaaagt ttcaaaaccc atttgatgaa gttttgctaa aactgcacta
     5521 agatgagtgg cattaacttt atctaaagta attttagaat ttgtaatagc cccagcacaa
     5581 agataagttc ctgcctcaat tctatcaggt ataacgctaa attctttaaa ttctaaaagt
     5641 tctccatcag tgccataaat ttcaagttca tctgtaccta tgcctttaat ttcaagtcct
     5701 gcgtctttta aaacttcgca aagttgaact acttcgggtt cttttgcaac atttaagagt
     5761 ttggttttac ctttagctag agctgctgcc atgatgatgt tttcactacc tgtaaccgtg
     5821 attttatcaa aaagaatttc attgcctttt aaatttccac tagctacgac atagccttgt
     5881 ttgatttgta tatttgcccc cattttttcc aaggctaaaa gatgtaaatc aataggtctt
     5941 tgtcctatgg cacatccacc aggcaaagat acttcacaat gcccaaaacg agcaagtaaa
     6001 ggccctagag taagtatgga agcacgcatt ttacgcacaa tgtcatactt ggctatggtt
     6061 tgattaagag tgtttgtgtt taataaagca ctattgtttt gaaaattgac cttagcgcct
     6121 aaattttcta gcaaagatat aagagttttt atatcagcaa cattaggaac attgttgatt
     6181 tttacttcat ttttagcaag tatacttgaa acgatcaagg gtagggcagc attttttgct
     6241 ccgcttattg taacatttcc gcttagatga tttgtgcctt cgatttctag ataagtcata
     6301 tttttccttg aaaaagttta aaaatgcatc attatagcat tcttaaactt ttgaaaaaat
     6361 ataatcaagc ttgttggctt tggagttctt gaatttgagc ttgaatagtt gaagcttggg
     6421 catttaatgt tgctatttga ctttcaatac ttttgatttg atcctcatta gctttagaca
     6481 ttttcgcagt tagttcaaca atttttgctt gaatttctgc aagcttttgt gttaattctg
     6541 taagtttatc ttcactatcg ctgctactat cttgttgtgt gttgttttgt gcgtttaaag
     6601 cttgagctgg agcttgagaa ttgttttgat tagaagtatt tgatttttct ttggcttctt
     6661 tgctgatatt tacctctaca gctggatctt gcgctaaagc gttttgttct tgatttttag
     6721 agttttgatt ttcttcgttt gagttgactt taacatattg acttaagcta tttaaggaat
     6781 tgttaatttg catattttct ccttaattta taatatatat tacactaaat cgacattatt
     6841 taaaaaaaat atactataat ttaaaataat ttttattaag gtttgcaatg ggcgtatttt
     6901 tagttctttt gggaggtatt ttttgggcta ttagcggtgt tttagctgaa taccttttta
     6961 aaaataatta tagcgtagat tgggtttgtt tttataggct tttatctaca gggttgattt
     7021 tgattttttt aagttttaaa gctcaaaaga ttttagtttt tacaaattta aaagaaagct
     7081 taagtatttg tatgtttgga ttttttgggc ttttgctaac acaatttggt tattttaagg
     7141 ctatttatta taccgatgct ggaactgcaa ctatgataca atattgtgca cctttaatta
     7201 taatgcttta tttgtgcttt aaaaataaaa aatttcctaa attgatagaa atttttgctt
     7261 tgattttgat tatttttgct ttgtttttgc ttgcaactaa aggagatatt gaagcggtgg
     7321 ttttaaatta ttggggtatt ttttgggctg ttataggagc ttttggagtt gctttttatt
     7381 ctttaagtgc tagagaagtg atattaaaat atggtctttt ttggataatg ggttgggcga
     7441 gtctttttgc ttcttttgta tttttattaa tcttgcaatt tgataagggt ttaattcact
     7501 atgcttttaa cttaaaagca tttttttcta tgggcgggat tgtctttatc ggaactatag
     7561 gggctttttg tttgtattta aaaggagtgg aatatatagg cgctctaaga gctagtatga
     7621 ttgcttccat agaacctgta gcagctgctt taatgagttt tttattttta aaaacccgtt
     7681 atagcttgct tgatattttt gcttttgttt tgattatatt gagtgttatt ttaaatgcaa
     7741 aaaagactaa agcttcataa agtttttaag tatttttttg cctttttgag ttaaaaccgc
     7801 ttcagggtga aattgcaatc cataaatagg atatttttta tgtttaattg ccataataat
     7861 attttctgaa ttatgagcta aaattttgca ttttttaggc atagaactaa tgtgtaaaga
     7921 atgatataag caaatttcaa tttctttttt aataccctta aaaataggat cttttttaaa
     7981 ataaagttta gaaattttgc catgcatggg attttgcatt ttagaaaccc taccgccaaa
     8041 aatttcagct atacactgat gtcctaaaca tatacctaaa atttttttat tttttttaaa
     8101 atatttgatt gcttttaagc ttaatttaga ttccttagga gaatgagggc caggagagat
     8161 gataagatga gtgaaatcaa atttttctaa ttctttagct tttttaaagg catcattttt
     8221 tatcacttta cattcaaaac caagttcttt aagataatag atgatggtat aactaaaaga
     8281 atcataatta tctataaata aaattttctt cattgcaatt ttaccttttt taaaccacgc
     8341 acggaattaa tacaataaat attttctgct tcaaataaat cttgtttaaa taatgctttt
     8401 tcttttatca aaccaagatt gattaagaaa tttctatata cgccatttaa cataccgctt
     8461 tgaatttgtg gagtataaaa ttgagtgttt ttttctaaga tgagattggt tcttgagcct
     8521 tcgcaaagtt catctttttc gttaaaaaaa gctatgtcat aacacaagtt ttgttgccat
     8581 ttgtatgagt gttgattata aaaagtacgc aacgagcttt tgtgatagag attgtcactt
     8641 tttgagttaa ttttatcatc acttaaaagc agaatatcgt ttgaattttg ttttaaggca
     8701 ctttgttgaa attcgtatct tccgtctttg tataaaataa gctttaaaat tccttctttg
     8761 tgtggatttt taaagggtag gggaaaatta taaaataaag agtgtttttt gtggaaaatt
     8821 ttttcatcga gtttaaaaag tgtaaaattt tgatattctt tataagaact tttttgattt
     8881 aaaatattat aaaaatcttt aaagagcttg tgagtattaa aattaaattt aagagctgaa
     8941 tttataagcc ttaataaatg ttcttttaaa aataaaattt gagaattttt aaaatatatg
     9001 gtttcaaaaa gatgaaaatc acaaggattt aaaatcgcac ttttaagttt taattcttca
     9061 aattcatctt tgaattttga gtcccaaacc aagccactac ccgtgctata agtataaatt
     9121 tcatcttgtt tttctaaggt gcgtatggct acgctaaatt tatttttatt tttgtgtatt
     9181 aaacctatag ttccgcagta aataccacga tctctttgtt ctaattcttc aataaattta
     9241 atgctttcaa gctttggagc acctgtaata gaaccacaag gaaagagagc tttaaaaatt
     9301 tgatataaag aaatattttt tttaagtttt ccttgtacgc ttgaagtcat ttgatgtaaa
     9361 gtagggtgac tttgaatttc aaaaagtttg gtttttaagc ttttttttgt gatgattttt
     9421 gaaagatcgt tgcgtaaaag atcgcaaatc ataacatttt cacttagatt ttttgtatca
     9481 ttttgcaaga aggttttatt ttcttcatct tttataggat ctttatcacg cttaattgtg
     9541 cctttcatag gttttgtaaa tatttttctt tttttggtct tgaagaaaag ttcaggtgag
     9601 aaggacaaaa tttctcttgt ttcatctttt ataaaagctt taaattcagt atcttgtcta
     9661 gaaagtaaaa gtttaaaaag ttcaaaagaa tccattttgc tatgaaattt aaaattttga
     9721 gtgaggttga tttgataaac tcttcctttg gagattgcct ctttaacctt gatgaaatt
//
LOCUS       DAZAND010000072         9584 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.072, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000072 DAZAND010000000
VERSION     DAZAND010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9584
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.072"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            42..737
                     /locus_tag="ACHDOB_001324"
     CDS             42..737
                     /locus_tag="ACHDOB_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HFN3326247.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEALELNNQAKKSSKQIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            734..1987
                     /locus_tag="ACHDOB_001325"
     CDS             734..1987
                     /locus_tag="ACHDOB_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase U32 family protein"
                     /protein_id="HFN3326248.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGS
                     FFKCKGKIVLNTPYEILAPLGDVIQTCDNELGKIYQKEDRYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            1988..2482
                     /gene="purE"
                     /locus_tag="ACHDOB_001326"
     CDS             1988..2482
                     /gene="purE"
                     /locus_tag="ACHDOB_001326"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HFN3326249.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGAKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMPGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2492..3028
                     /locus_tag="ACHDOB_001327"
     CDS             2492..3028
                     /locus_tag="ACHDOB_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HFN3326250.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3040..3903
                     /gene="glyQ"
                     /locus_tag="ACHDOB_001328"
     CDS             3040..3903
                     /gene="glyQ"
                     /locus_tag="ACHDOB_001328"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HFN3326251.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNETE"
     gene            3890..4615
                     /locus_tag="ACHDOB_001329"
     CDS             3890..4615
                     /locus_tag="ACHDOB_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HFN3326252.1"
                     /translation="MKLSEIYNFLDQLSPFDIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMICKNISLISMHTNYDL
                     SHLNTYFTEEILGFKISFKDEFLIYVENSMSFEALCDWVKKKLNLQILRVSDCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQAIITVSKNPFQYF"
     gene            4625..5341
                     /locus_tag="ACHDOB_001330"
     CDS             4625..5341
                     /locus_tag="ACHDOB_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HFN3326253.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINRTLKDAELKIGKINT
                     DLEKIDEEIKDIENQKVQNNAHISEFSAKIKELSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVGEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            5338..6495
                     /gene="waaA"
                     /locus_tag="ACHDOB_001331"
     CDS             5338..6495
                     /gene="waaA"
                     /locus_tag="ACHDOB_001331"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HFN3326254.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLLSFLKSKYKTSLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKTLVLKFDSRITTITQTGFEYAKEFCKKVNYLAFENFL
                     PFWFKPCKVLVIFEAEYWLMLVFMAHIYKTKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSELDKVRLESLGAKNVKIFKNIKANLEIKNNKIYAKPKEKLIIFASTHK
                     DEEELLLDHFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSLKDENKKFAKK
                     ILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEVAYFDNVLISGKFIHNQKALF
                     EEVENVYFCENLKDLNDKIHYLNLKVKISKKENLDLIIQTIQKGIDARKSL"
     gene            6476..7228
                     /locus_tag="ACHDOB_001332"
     CDS             6476..7228
                     /locus_tag="ACHDOB_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFN3326255.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKTKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKAKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFDYYFKAELDNSFAKVGFEIKNLDF"
     gene            7296..8633
                     /gene="ffh"
                     /locus_tag="ACHDOB_001333"
     CDS             7296..8633
                     /gene="ffh"
                     /locus_tag="ACHDOB_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HFN3326256.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEALDISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            8698..8925
                     /gene="rpsP"
                     /locus_tag="ACHDOB_001334"
     CDS             8698..8925
                     /gene="rpsP"
                     /locus_tag="ACHDOB_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HFN3326257.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            8928..9170
                     /locus_tag="ACHDOB_001335"
     CDS             8928..9170
                     /locus_tag="ACHDOB_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HFN3326258.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            9163..>9584
                     /gene="rimM"
                     /locus_tag="ACHDOB_001336"
     CDS             9163..>9584
                     /gene="rimM"
                     /locus_tag="ACHDOB_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HFN3326259.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNASNSTVLFENYEDIEKAKELINLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVIDILETGASYLFEIQSDEKWVE"
BASE COUNT         3584 a         1070 c         1840 g         3090 t
ORIGIN      
        1 tgagcaatta ttgaaaatct agatttaaaa aagggaaaaa aatgactcaa gaagagcttg
       61 atgctttgat gaatggtgat gttgatcttg attcagagac agaagcagag gtaaaaaccg
      121 aagaatcaaa taccgaagaa gatgctttga tgttagaaga tgtcaaaata gctgattaca
      181 aacctaatcc tagtgtagta tggccaccac ccccaccaaa tcaggagcat aaagttgtac
      241 atcagttaga tgatgttaca aaagatagcg agcttaaagc aacggaaatg atggataagc
      301 ttgaaagtat taataatttt tttgcggatt ctgaaagttt actcaaagaa ataaataaag
      361 caatagaaaa aaatattgat attttttcta aacttaatga aaaatttcct aatgtggaaa
      421 gtttcagtga agctttagaa ttaaacaatc aagctaaaaa aagttctaag cagattgtcg
      481 gaaatcttca aagcggacaa gatgaagtga tgatggcaat ggatgcaatg cagtatcaag
      541 atatacatcg tcaaaaaatc gaacgtgtta ttaatgtaat gcgtgcttta agccgttata
      601 tgagttcttt atttgaaggt aaaattgatg ataaaaaacg tgtaagttct gcagtgcata
      661 ttgaaggtga tagtactgct gatgttgtaa gtaatgatga tatagaagct ttaattgcaa
      721 gtttagggca aaaatgatca ttcctgaaat agtagctcct gcaggaaatt tcacaaaatt
      781 aaaaattgct ttagcttatg gcgcagatgc ggtttatgcg ggtgtgaata atttttcttt
      841 aagatcacgc actgcaagag aatttaatta tgaaagtttt gaagaggcta tcaaatatac
      901 tcatgagcgt ggtaagaaaa tttatgttac tttaaatggt tttcatttga gttctcaaat
      961 tgaaggttta aaaagacata ttttaaaatt gcgtgagatg aagcctgatg cttttatcgt
     1021 agcttctgtt ggagctatgc gtcttgttaa agaacttgca cctgaaattt ctttacatgt
     1081 ttctactcag gcaaatattt taaattattt agatgctcaa gtttataagg atatgggtgc
     1141 taaaagggtt gtaattgcga gagaattggg acttaaagat gctaaagctt taaaagaaaa
     1201 ttgcgatatt gaacttgaag cttttgtgca tggttctatg tgttttgctt attcagggcg
     1261 ttgtttaata agctctgtgc aaagtggaag aatgagcaat cgtggatctt gtgcaaatga
     1321 ttgcagattt aattatgagc tttatgctaa aaatccagaa aatggtactt tatttcgttt
     1381 agaagaagat gaaaatggta ctcatgtgtt taattctaag gatttaaatc tttgttctta
     1441 tatagaaaaa atcatgcaag aaaattgtat cagtgctttt aaaatagaag ggcgtactaa
     1501 aagcgaatat tatgttgcgc ttacaacaag gacttataaa atggccatac aagatgcttt
     1561 agagggtaaa tttgagtcaa gtaagtatga aaaagagatt gctacgctta agaatcgtgg
     1621 ttttacagat ggctatcttg tttcgcgtcc tttagaaaaa accgacacgc aaaatcataa
     1681 tacaagcata gaagaaggtt ctcatcaagt acatgctata agcgaagatg gaagcttttt
     1741 taaatgtaaa gggaaaatcg ttttaaacac gccttatgaa attttagctc ctttaggcga
     1801 tgtgattcaa acttgcgata atgaactagg taaaatttat caaaaagagg atagatattt
     1861 tatagagttt aaaaaactca ttgctaaaaa caataaagaa tttagcgaaa ttcatagcgg
     1921 taatgaacat gaaatccaat taccaaataa aatcagtgca ttaagttttt taagaaagga
     1981 aatatagatg aattttgttt ctattttaat gggaagcaag agtgattatg agactatgaa
     2041 agaggctgct aaaactttag aaagttttgg ggtaaagtat gaacttatca tttcatcagc
     2101 tcatcgtagt ccaaaaagaa caaaagagta tattgcaaat gctgaagaaa aaggtgcgaa
     2161 ggtttttata gcagcagctg gaatggcagc gcatttagct ggagctgttg cagcttatac
     2221 aacaaaacct gttttaggag tgcctatgcc aggaagtaat cttgcaagta tggattcttt
     2281 gttttctacg gtgcaaatgc ctagtggaat tcctgtagga actttagcta ttggtaaggc
     2341 tggagcgatc aatgctgctt atttggctat gcaaatttta gctatttatg atgttgattt
     2401 agcacaaaag cttaaagaag atcgtcttga aaaagaaaaa aaacttgtat ctgattcaaa
     2461 agaagtagaa gttttattat aagggataaa aatgcaaacc tatcttgaac ttgaagaatt
     2521 ttgtaaactt gtgcatttaa atgaagatgt ggttaagggt atgatggcca atggggcttt
     2581 aaattttaaa gaagaagagg gtaaaattta catcgaagct catcaaggta cttttagtgt
     2641 agtacctagt tctgcaaaat ctcaaactgc aatggtaaat tcaatgactt tagcaggaga
     2701 aagttttgtt gaaaaaacaa taggaactat tttaaatttg catgaaaaag ttttagatgc
     2761 taaagatgaa acacttgaag cattaaaaaa tgagaataaa tttttaaaag acgcccttta
     2821 ttctatgcaa gaactttatg atgaagatag aaaaactata gaaaccttaa acaatgagct
     2881 aaaacatgcg cgtgaagaga tagaatttct caagcgtaaa tataaattaa tgtggagtaa
     2941 aaccgcagaa atttttggag ctaagacaga gcctgatttg gaaatgaata aaaatttaga
     3001 aaaacctatt gaaaatatgg aacaataaag agagatacaa tgactttttc acaaatgata
     3061 cttaatttgc aaaattattg gcaagagcaa ggttgtgcga ttatgcaacc ttatgatatg
     3121 ccagcaggtg caggaacctt tcatccagca acttttttaa gaagtttagg aaaaaaacct
     3181 tgggcagctg cttatgtggc tccaagtaga aggcctactg atggacgtta tggtgaaaat
     3241 cctaatcgct taggtgctta ttatcaattt caagttttga ttaaacctag tcctgataat
     3301 atccaagaat tatatcttaa aagtcttgaa aatttgggtt ttgatttaaa aagtcatgat
     3361 attcgttttg ttgaagataa ttgggagagt ccaagtttgg gtgcttgggg tttaggctgg
     3421 gaagtatggc ttgatggtat ggaagtcact caatttactt attttcagca agttggcggt
     3481 atagcagtag atttagtaag tgctgaaatt acctatggtc ttgaaagaat agctatgtat
     3541 cttcaaaatg ttgataatgt ttatgatata gtttggagtg aatttaatgg agaaaaaatt
     3601 aaatacgcag atgtgcataa gcaaagtgaa tatgaattta gtaaatacaa ttttgaagta
     3661 agtgatgtta agatcttaaa tgagcagttt gaaaattctt acaaagaatg taaaaatatt
     3721 ttagaacaag gactagcttt acctgcttat gattattgta tgcttgctgc acatactttt
     3781 aatcttttag atgcaagagg agcaatttct gtagcacaaa gacaagatta tatgttaaaa
     3841 attcgtgagc tttcgaaaaa ttgtgctgaa atttataaga aaaatttaaa tgaaactgag
     3901 tgaaatttat aattttttag atcaattaag tccctttgat atccaagaat catgggataa
     3961 tagtggaatt ttgcttggag atagggatag tgaaatttca actgtttatt taagcttaga
     4021 tattgatgaa aatatcatta aagaagcgag tgaaaattct ttaattatca cacaccatcc
     4081 tttgatattt aaaggtttaa aagatttata tgacaagact tatcctagag cttttattaa
     4141 agaaatgatt tgtaaaaata tttctttaat cagtatgcat acaaattacg atttaagtca
     4201 tttaaacact tattttacgg aagaaatttt aggttttaaa atttctttta aagacgaatt
     4261 tttaatttat gtggaaaatt ctatgtcttt tgaagctttg tgtgactggg tgaaaaaaaa
     4321 gttaaattta caaattttac gtgtaagtga ttgtggtaaa aaagacatta agcgtattgc
     4381 tatatgtact ggaagtggcg gggatttaat ttctaaagta gatgcggatt gttttttaag
     4441 cggagatttt aaatatcatc aagctttaga ggcacttagt aatcaaatta gtcttattga
     4501 tttgggtcat tttgaaagtg agagatattt ttctcaatgt ttagcaaaag acttgaaaaa
     4561 tttgccgcta caagctataa taacagtttc aaaaaatcca tttcaatatt tttaaggaaa
     4621 ataaatgaat aaatatctcg aacaattagt gcttttatca aaaatagatc aagaaattga
     4681 tagttatgaa ccaaaaatag acagtattaa taggacttta aaagatgctg agttaaaaat
     4741 aggaaaaatc aacacagatt tagaaaaaat cgatgaagaa atcaaagata tagaaaatca
     4801 aaaagtacaa aataatgctc atatttctga gttttcggca aaaattaaag agctttctaa
     4861 aaaaagtggt gcagtaaaaa cagaaaaaga agctaatgct ttaaaaattg aagaagatat
     4921 tgcaaaagag caattagacg ctgcaaatga tgaaattgta agactggata aaattttaga
     4981 gaataaagaa acttataaaa aagaacttga agaagaaaaa atcaaacaag agcaaaatat
     5041 taatgagatt agagtaagca ttaaatctga aatggaagtt cttgaaaaag atagaatgag
     5101 tgtttatgat aaaaaaacca aacttgtggg cgagatgaat caaaaagttt taagttttta
     5161 tgaaaaaatt cgcaaatggg cgaaaaatac tgctgtagtt cctgttaaaa aacaagcatg
     5221 ctatggatgt tttatgaaaa tttacgataa gacttatctg tctgttgtaa aaggtgaaga
     5281 gattgtaact tgtcctcatt gtggaagaat tctttataaa gagcaagaag aacaaaattg
     5341 atcttttttt attatttttt aacttggacg gcatttttat tttgtgccgt ctttattctt
     5401 ttgctttctt ttttaaaatc caaatacaaa actagtttaa aatcccgatt ttttctttat
     5461 aaaaatttac atcaagaaaa agctgatgta cattttcatg cttgttctta cggggaggta
     5521 agaagtatta aaactttggt tttgaaattt gattcaagaa taactactat tactcaaaca
     5581 ggttttgaat atgcaaaaga attttgtaaa aaggtaaatt atcttgcttt tgaaaatttt
     5641 ttgccttttt ggtttaagcc ttgtaaggtt ttggtaattt ttgaagcaga atattggctt
     5701 atgcttgttt tcatggcaca catttataaa actaagatta ttttgcttaa tgcgagaata
     5761 tctgataaat cttatcattc ttatcaaaga ttttcttttt tttataaaaa aattttttct
     5821 tatattgatg aagtttttgc tcaaagtgaa ttagataaag taagacttga aagtttggga
     5881 gctaaaaatg ttaaaatttt taaaaatatt aaggcaaatt tagaaattaa aaataataaa
     5941 atttatgcca aacctaagga aaagcttatc atttttgcta gtacgcataa agatgaagaa
     6001 gagcttttgc ttgatcattt taaactagaa gaaaatgaaa aactcattat cgccccacga
     6061 caccctgagc gttttaaaga agttgaaaat ttgcttttaa acaaaggttt ggaatttgaa
     6121 aaatttagtt ctttaaaaga tgaaaataag aaatttgcta aaaaaatttt gcttttagat
     6181 gctttaggag agcttgtaaa tttttatgca atttctgatg ttgttgtgct tggaggttct
     6241 ttcatagaag gcataggagg acacaatcct atagaagtgg catattttga caatgtatta
     6301 atcagtggga aatttattca taatcaaaag gctttatttg aagaagtaga aaatgtatat
     6361 ttttgcgaaa atttaaaaga tttaaatgat aaaattcatt atttaaattt aaaagttaaa
     6421 atttccaaaa aagaaaattt agatcttatt atacagacca tacaaaaggg aattgatgca
     6481 agaaaaagct tataaactct tagctttgca agaaaaaatt tcaaatcgtg aagctaaaga
     6541 tttgattgat aagggttgtg ttttttcgca tggaaaaaaa gttgtggttg ctagagcttt
     6601 gatgagcgat aaggcaagat ttaatgtgat aaaaaccaaa aatcctcaaa ttatttttga
     6661 agatgataag attattgcta ttaataaacc ttatgcttat gtgagtgaag acttggagaa
     6721 aaaatttaat gccaagcttt taaatcgttt agacaaagaa acaagcggtg tgattttgct
     6781 ttgcaaagat gaagatttta gaaagctttg tatagaagaa tttaaaaaac atagagttta
     6841 taaaagttat attgcggttt tagatggggt tttggctgaa gaggttgaag tgaatgagcc
     6901 tatttttacc ataaaagcaa aaggcggggc gttaagtaaa gtttcaaaag atggtttaag
     6961 tgccttaagc atcattactc ctattatgat gcagtcaaaa aaaaccttag caaaaatagt
     7021 cattcaaaca ggtagaactc atcaaatcag agtgcatgct aaatttataa aacatggcgt
     7081 tgtaggtgat gaaaaatatg ctaaaatttc aagcgataga atgtatttac atagttatga
     7141 aattaaaatt tttgattatt attttaaggc tgagctagat aatagttttg caaaagttgg
     7201 ctttgagata aaaaatttag atttttaaag ccatttaaga aaaaattttg tataatgcaa
     7261 ggtttaattt aaaaatttta tagaaaggtg ataaagtgtt tgagttagtt agcgaatctt
     7321 ttaaatcagc gattaataaa ttacgttttg ttgatgatga aaaagcactt aagaacgctt
     7381 tagaaacctt aaaaaaagct cttttaaaag cagatgttca ccataaggta actaaagagc
     7441 ttttgacttt gatagaagaa gatgtaaagc aaaacggaat aggtcaaaaa caatttttaa
     7501 atgccattaa agtaaattta gaaaatattt taagtgtcaa tggcaaaaat caaggttttg
     7561 tttttgcttc taaaccccca acagtagttc taatggcagg tttacaaggg ggcggtaaga
     7621 ctacaagcac tattaaactt gcaaattatt taaaattacg caataaaaaa gttttagttg
     7681 cagcttgtga tttacagcgt ttagcagcag tggagcagct aagacaactt tgtgaagcta
     7741 atgaaattga acttttcttc atagaaaatg aaaaagatcc tattagagtt gctaaagagg
     7801 ctttaaaaaa ggctgaaagt tctatggtgg atgttttgct tgtggatact gctggacgtt
     7861 tggctataga tgaagctttg atgaatgaat taaaagcagt taaggatgtt ttaaatcctg
     7921 atgagatttt ctatgttgct gatgcaatga gtggtcaaga tggggtcaag actgcggcta
     7981 gttttaatga agctttggat atcagcgggg taattttatc aaaatttgat gcagatacta
     8041 aaggtggagt agccttaggt atagcaaaac aaatcggtat tcctttaaga tttattggtg
     8101 tgggtgaaaa agtagcagat ttagaagttt ttataccaga tcgtatagta agtcgtatta
     8161 tgggtgaggg tgatttggca actttagctg aaaaaactgc tgcgattatt gatgaaaaag
     8221 aggctaaaaa actcaatcaa aaaattaaaa aaggtgaatt taattttaat gattttctta
     8281 atcaaatgga aagtattaaa aaattaggaa gcatgaagtc tttaatcggc atgataccag
     8341 gacttggcgg aatggcaaat gcggtaaaag atatagattt ggataattct aaagaaatca
     8401 tacgcattaa agcaatgatt tcttcaatga ctccaaaaga aagagaaaat cctgatttat
     8461 taaataatgc tagaaagcgt cgtatagcag agggagcagg tctttctcag gtagaagtca
     8521 atcgtttttt aaaacaattt agcaatgcag caaagcttgc aaaaagattt tcaggtaaaa
     8581 aaggaatgga aagtttaaca cagatgatga gtcaagctag aaggcaattt taaattttat
     8641 ttataaatac tttttatagt atctataaat aaaattttta atttttaagg agtataaatg
     8701 acagttatta gacttacaag aatgggtaga actaaaagac cattttatcg tattgtagtt
     8761 acagacagta gaaaacgtcg tgatggtggt tggatagaaa gtattgggta ttataatcct
     8821 atggtagaac ctgaggtaat taaagttgat gcagagcgtt tagcttattg gaaaagtgtt
     8881 ggtgcaaaac ttagcgataa agttgcttct atcactagca aataatcatg gtagagaatt
     8941 ttcttagaga atacgcaaaa ttaattgcag attatcctga acagattgat actcaaaaaa
     9001 ttgaattaag tgaaaatttt tttgagattg ttctttttgc acataaggtt gatacaggta
     9061 agcttatagg taaaaatgga aaaatgatca atgctataaa aaccgtaatc tctgcttata
     9121 agagcaagga tgcaagttct tatagagtaa cggtaaaagc acttgagtga aaaagatttt
     9181 gttcaagttg caaaacttgg taaaactgtg ggtcttaagg gttatgtaaa attgcataac
     9241 ctgagcgact tttcttctca atttaaaaaa gatgctactt tttttataaa aaacaccaaa
     9301 gaaatgttaa agattaagca ttataatgca agcaattcta ctgttttatt tgaaaattat
     9361 gaagatatag aaaaggccaa agaattaatt aatcttattc tttttcagag tatcgagaaa
     9421 agcagacaaa cttgtaaatt aaaaaaagat gagttttttt attttgatat tttagagtgt
     9481 gaagtttttg aagaagataa aagattaggt aaagtgattg atatcttgga aactggagct
     9541 tcttatttat ttgaaattca aagtgatgaa aaatgggttg aaaa
//
LOCUS       DAZAND010000073         9561 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.073, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000073 DAZAND010000000
VERSION     DAZAND010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9561
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.073"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            106..981
                     /gene="zupT"
                     /locus_tag="ACHDOB_001337"
     CDS             106..981
                     /gene="zupT"
                     /locus_tag="ACHDOB_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HFN3326260.1"
                     /translation="MQFTFEQIFIAMLLTLFAGFSTAIGSIIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNHYDSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGFA
                     EPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     AGMAIMALSLNLLGQ"
     gene            complement(1006..3521)
                     /locus_tag="ACHDOB_001338"
                     /pseudo
     CDS             complement(1006..3521)
                     /locus_tag="ACHDOB_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343706.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
     gene            complement(3532..4106)
                     /locus_tag="ACHDOB_001339"
                     /pseudo
     CDS             complement(3532..4106)
                     /locus_tag="ACHDOB_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343707.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
     gene            complement(4588..5097)
                     /locus_tag="ACHDOB_001340"
     CDS             complement(4588..5097)
                     /locus_tag="ACHDOB_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HFN3326261.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIRKCYLILS
                     ILNQKQVGGEIFNDKNVRNAKMQNTSVSYTIEIIDTLPGNTYKEFRANVPFPPSFNNP
                     EFYHTLKCI"
     gene            complement(5097..5627)
                     /locus_tag="ACHDOB_001341"
     CDS             complement(5097..5627)
                     /locus_tag="ACHDOB_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HFN3326262.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKTAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQVQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(5640..6728)
                     /locus_tag="ACHDOB_001342"
     CDS             complement(5640..6728)
                     /locus_tag="ACHDOB_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HFN3326263.1"
                     /translation="MPADLNDYFNKKNGNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(6741..7655)
                     /gene="ilvE"
                     /locus_tag="ACHDOB_001343"
     CDS             complement(6741..7655)
                     /gene="ilvE"
                     /locus_tag="ACHDOB_001343"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HFN3326264.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKDLENAQIELLKANNFQSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
     gene            7832..8038
                     /locus_tag="ACHDOB_001344"
     CDS             7832..8038
                     /locus_tag="ACHDOB_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HFN3326265.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITELLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKANK"
     gene            8035..8490
                     /gene="bcp"
                     /locus_tag="ACHDOB_001345"
     CDS             8035..8490
                     /gene="bcp"
                     /locus_tag="ACHDOB_001345"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HFN3326266.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVTSHEKFISKFNLKHILLSDSEKEVVKAY
                     RAWGLKKNYGKEYEGIIRSTFVIDETGKIAQIYSNVRVKDHALKVLESL"
     gene            8490..>9561
                     /locus_tag="ACHDOB_001346"
     CDS             8490..>9561
                     /locus_tag="ACHDOB_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HFN3326267.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSSVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLNEESLKQNLKEG
                     FYRSTKDEMVFVEFWRFNTFFKNKWKNFEDFLKRPLSVQAEIKWRNKLFGTYNLSPII
                     ILENILPSRYEVIAKSEIYHDNQ"
BASE COUNT         3018 a         1489 c         1533 g         3521 t
ORIGIN      
        1 atattcttaa aaattttaat atcttttgta tttttaccat atgttaactt tttataaata
       61 taagtattta aaatattgaa attttattga agttaagaat tattaatgca atttaccttt
      121 gaacagattt ttatcgcaat gctactgact ctttttgcag gtttttctac agctataggt
      181 tctataatag cctttttttc tagaaaagat gatttaaggg tgctttcttt aggacttggt
      241 ttttcagctg gggtaatgat atatatttct ttcatggaaa ttttacccac tgcactgaaa
      301 gattttaaaa atcactatga ttcacattgg gctgagcttt tgggattggc ttgttttttt
      361 ggtggaattt taatatcttt attgattgat aaattaatcc ccgaagatgt caatcctcac
      421 gagcctaaag aggatttaag cgagttaaaa atttgtccct tacctcaaaa aggacaaaat
      481 cctccgaaat ttcatcctgg agaaaaatta catcagatca atactaaagc tttaaaacgc
      541 acagggattt ttacagcttt agctattgct atacataatt tcccagaagg ttttgctact
      601 tttatttcga gtcttgataa tcttacttta ggaattgcta tagctatagc tgtggctata
      661 cacaatatcc ctgaaggttt ggccgtgagt ttgccaattt accatgctac aggagataag
      721 aaaaaggctt ttatttattc agctctttcg ggttttgcag agcctttggg tgcttttgtt
      781 ggagctttga ttttattacc ttttataggc gatcttactt tagctataag ttttgctgtg
      841 attgcaggaa ttatggtttt tatatctctt gatgaacttt tgcccgctgc aaaaacttat
      901 gataaggccc atgatagttt atatggactt atcgcaggaa tggcaataat ggctttaagt
      961 ttaaatttgc ttggacaata gaaagccttg cggctttctt gcaatttaat tcacaccttt
     1021 tggcgcatta aaggcagtaa gttttggtgg ttcaccttta aatttttcta tgtttacgag
     1081 ccctgtgtga gagatattgc cattggcaag ttttgaagtt ggcatatcca tggttaaaac
     1141 atttgcattt ccacatttgc aaagtccgtt ttcattagga tcatactaag caccttcaca
     1201 aagccttaca accccttgca tgatttcatc gcttacaaca gcacctgcta aaacttcacc
     1261 gcgtttgtta aacacgcgta ctacatcgcc attttttata ccaagttttt ttgcatcttt
     1321 aaaattgatt aaaataggct ctctatcttt tattgcataa gtatctctta agcttgtgtg
     1381 gcaaagttga gagtgcaagc gatctcttgg gtgatttgta agtaagtgga aaggtgcttc
     1441 tttgattgca tttccaagcc attcaatagg ctcaaaccaa gtaggatggg ctttgcaatc
     1501 atcataatta taatttttaa tcgcttctga gtaaatttca ataagtcctg aatctgtacc
     1561 cagagcattt aagataggat cttctataaa ttctgaaaaa cgagtccatt ctaaactttc
     1621 agctgttagt tcaaaagtga ttggttcatt tttagcccaa aattcttcaa aacttggcat
     1681 aggaatagca aaagcttcgc caaaactttg agtttgtttt agggcactgt tgtagtattc
     1741 tttgatgaaa tctttagctt ttttgccatt ttctgtgtag gcattaaaga cactttttcc
     1801 ataaatttta caaatatcag agaaaattac ataatcatct ttgctttcac ccacaggctc
     1861 aactgcttgt ttcataggag ctatatgcat atttgaataa tctcctgtca tggcaatatc
     1921 atctctttca taagatgaag ttacaggcat aacaatatct gccattttag ctgttggggt
     1981 ccagcaaatt tcatttacca caacggtgcg tggttttctc catgctttta cgttagtgtt
     2041 agtatcttga tggtgtacta aaggatttcc gcctacccag taaatgaaat caatatcagg
     2101 ataggtaagc ttagagccgt tgtgatctat ggtttttcca gggtgaagta aagcatcagc
     2161 gattcttgct acagggaaag aataactcgc tgcattttga agccattctg cgccttcgtt
     2221 tgaagtttcg ctttttgcta aacctttaaa tttaccattt ttccaaatcc ctaaactacc
     2281 tgccgtcata ccgccgataa ctccgccttt gcaagttgga acaccgccat tgctgtaatg
     2341 atagcttagt ccaaaaccac ctccttttgt gccgatttgt cctaacattg cacaaagagt
     2401 aactagtatc cagtgaggct gttcgccatg atgtgctctt tgcatacccc aaccactcat
     2461 aatcatagta ggattatcat aaaaagtttc agctaatttt ttgatagttt tttcatcgat
     2521 accgcaaatt ttacttgccc atttggtatc ttttttcact ccatcttctt taccttctaa
     2581 ataatcttta aatttatcaa agcctgtagt gtaagtgtct aaaaactcgt aattaacttt
     2641 tttcttagca attaaatggc ttgccatacc catcattaaa gctacatcgg tatttgggcg
     2701 tggagctatc catttggcat ttaaaaattt tgctgtagtg gtttttatag gatctataca
     2761 aattattttg attttactgt ctttaagttt ttcaaaatac gccaaacctc tttgttcgtt
     2821 tgaagtccaa gctatgcgta aagtagaaag cggatcagca ccccaaatca caacatattt
     2881 agaatcactt aagatatttt cccacgaggt ttgttgctca taaacttcaa tcgatcctac
     2941 aacataaggc ataatcactt gagaagctcc tgtagaatag tctcctgtag ctcctacaaa
     3001 tccacctgtt acatttaaaa atctatgaag taagatgcgt gagttttaca tatttccact
     3061 tgatttccag ccatagcttc caccaaaaat cgcacttgca tctttactat ctcttgtttt
     3121 ttaagctctt tggcgataag cttgatcgct tcatcataac ttacgcgaac aaactcatct
     3181 tttccgcgaa gctcaggctt aggattgtca ggattttcaa ggtaagattt acgtacataa
     3241 gggtacttca cacgagattt ataaaccata tcggcagtat agtgttgtaa aggattatcc
     3301 atttttgtaa ctttttccta aggttcactt tttactatct tgccatcttt tatagtgagt
     3361 tttaaaatct cccagtgtgc tgcggtaatc acttctccat tttttacaag tccaaggcta
     3421 acttttgaag cttctaaggt ttttcctgca cttaagcttg gaatgagagg taaagcactt
     3481 aagctcgctc caatttttaa aaattttctt ctatctagca tgcttttctc cttattttgt
     3541 tttaaaatct tttgcgtttt tttgtaagta ttctaaacta gccatctgtc ttttttatca
     3601 atgcctgttc tatcagccat agaacggaaa attgcaggcc aagtattagc tgtaaattct
     3661 ttttctttgt ggatagcatg acaaattccg cagttattta caaaaagctc tttagctcga
     3721 tttaacattt ctttattgtc tttgacaaat tctttttgtt ctgcccaaat ttcaaggctt
     3781 accttatccc attttccatc ttttccagtt attctttgag agaaatttaa ttttgtattt
     3841 ttagaaaaag ctgcaacaat aattctttga gagtcattga aataaatcac agaagttgct
     3901 ttaggattta cataaccatc aatttttagc aaaaccctgt tattttcgct ttttaacact
     3961 tcaaaaggat ttgtaggtaa aagtcttcct atgactttag tatcatcttt attaagataa
     4021 agtgatacaa cttcatcggc atagacggta ttttctgccc ataaatatgt cgctaggaca
     4081 acaaaagaaa tgaaaatctt tttcattgct attccttaat ataaatttga tgtaaatgta
     4141 ttttaatact atgcaattta attattactt aattgtataa tttttactaa gattacttat
     4201 ttttagtgct ttaatattat tctttattga tataataaat tttgagttaa ttatatttta
     4261 cttattgttt tttagaaaag ataaaacttc aattataaaa aaaaagtttg ttttgagctc
     4321 agattaatac ttctgagccc attttgatct cgttgagttt taaggtataa gctttttata
     4381 gctttatttt ccctcccatt tttactctca tttagtaaag tgcttataga tttaaaggtt
     4441 gattgactcc ttatcttgca tattaataaa tattatatta ataaaactta aattattatt
     4501 aatatttata taatttatag tggaattatt gttttgttat gtgaataatt aatgtatttt
     4561 agaatttttg ctagttgatt tcttgaatca aatacatttt aaggtgtgat aaaattcagg
     4621 attattaaaa cttggaggaa aaggaacatt agctctaaat tctttatagg tattacctgg
     4681 gagtgtgtct atgatttcta tagtataaga aacacttgta ttttgcattt tagcgttacg
     4741 gacattttta tcattgaaaa tttctcctcc tacttgtttt tggtttaata tgctaagtat
     4801 caaatagcat tttctgattt caaatttagt aagattttga acttttccac ttactataac
     4861 gctctcatgt cttagatctc ttgtgtaggt tagtttgcta agatcggctt gagtggtgaa
     4921 ttgattgatt gtcagaaaaa tagaatatat caaaagtgcg gtaaaaatag tagctatggt
     4981 ataagaaatc aaagccattt ctttctgttt gacttttaga aagattaaaa tacaaatcaa
     5041 ggcaaagcaa ataagtaaaa tgataaaagc tataatatga aaaatcgtaa aatgcattaa
     5101 aaacactccg aaactaagcg tatggtatag ttattttcat agttaaaatt ttcaaaagca
     5161 attctttgaa cttgggttgc gtttttcttt agatctttaa tttctctact tttttgtcta
     5221 aaagggataa atttcttttt atattcttct atgatattat cattaggtat tttatctgca
     5281 aaaattttag ctgtaatttt acattcttta aaattatttt ttgaattatt tgtaatgtta
     5341 aaatcaacaa ttaaatcatt tgagctttgt atcatttttt gatctgtaat agcggttttt
     5401 cgagttctta cttcattgtc tattagttta tacccataga tataaactaa aaaacaaata
     5461 ataatatcaa atgcgataat aaaaagtgcc gctataggcc tatggcgtaa aaatacacaa
     5521 agaagtaaaa cacaagtgaa gagaaaaaaa actaataaaa tcagcatata atctactaaa
     5581 tataaatgag tagtgtaaaa aagcacgatt tctcttagtt tttccacttg tgtatccttt
     5641 tagttcatgt tggcagcact ttgcttttta gcatctttgg tatcaaccca aatgtttggc
     5701 actgctccac ctggagttaa gaaaatttta gcatcttgat tgacttttaa ggcttcatta
     5761 aattcttttt gagtttcaat ttgttttaaa tttagcaaag gggtgtttaa gctgtttgca
     5821 atttctttat tagaataagc ttgtgcatct gcttctatct taacagccat agctttacct
     5881 ttggcactga ttatggttgc atttgcttcc ccttcagcta aagcagcttt ttttaaggct
     5941 tcttgattag ctctttctac ttcatattta gttctttcag cctcttgttt tgcaatttgc
     6001 acgcgttcga tttgttcttt tacttttgaa ggtaaaataa tttctctaag ttgtacagcg
     6061 cgaagttcta caggttcgtt tggttgggct tctatggttt ttcttatacc ttcttctatt
     6121 tgagcggcta ttgtattacg attagtagga agttcttcgg ctgtatattt tcctacaaca
     6181 cttcgcacta catcacgaac aactggatcg ataattttat tttcccaatt taagctccaa
     6241 gtagctatgg tttgaggaac ttgcaaagga tttaaacggt attgtactgt aacatcaata
     6301 gatacaggca atccacgaga atcaagtaca gaaatactat ttttattaat aacacctgaa
     6361 cctgaagata aattttcatt acttccctct atagaagcat agttgatttg tcttactcta
     6421 gtatcgatta tggttatttt ttgtacaaaa ggtaagaaaa agtgaagtcc tggttctaat
     6481 ggatttgggt catatttacc tgttgttgat ttaatcccca tttccccaga atttatcacc
     6541 ataaaaggtt ttgcaacgat taaaaataag ataataataa tcaccccata aacaaatgga
     6601 gagaatttcc caaaaccttt aaaattaaat tctggtgctt tgaaattgaa attttgacgg
     6661 ttgttgtttc cgttattgtt agaatttcca ttttttttat tgaaataatc attcaaatca
     6721 gctggcattt atttcctttt ttaaatataa gttagcatag atgcgtattt ttcattgcgt
     6781 ccataaacta catcaaaata agcatcttga agttttttag ttacagatcc tcttaaacca
     6841 tttcctatta ttcttgcatc aatattgtta ataggtgtga tttcagcggc tgttccggta
     6901 aaaaatgctt catcagcagt ataaacttca tctcttgaaa ttctttggcg aagcacggtg
     6961 ataccaagat catgagcgat tttaagcact gtatcttgag taatgctttt taaagaaaaa
     7021 tcatttggag gtgtgattaa aaccccatct tttacaataa agaaacattc tcctgttcct
     7081 tctgcgataa aaccttcttc atcaagcatt aaagcttctt catatcctgc ttcaatagct
     7141 tcaaattttg caatttgaga gttaagataa tttgcacttg ctttagcttt tcccatgcat
     7201 gatttaacac tatttcttgc aaaagacgaa atttttactt ttatgccttt ttctaaacct
     7261 tcttctccaa ggtaagcacc ccattcccaa gctgcaattc caactcttac aggagctttt
     7321 atatgataaa gtcccataac tccatcgcct aagaaaatca gagggcggat atagacattg
     7381 ctttgaaaat tgtttgcttt taagagttca atttgtgcat tttcaagatc tttttgagaa
     7441 aaaggacaat ttaaaagagt aatttttgca gactctaaaa gtcttttggt gtgatcttca
     7501 agtctgaaaa ttgctaagcc tttatctgtt ttataggctc tagttccttc aaaaacagca
     7561 ttgccataat gcaaagaatg ggttaaaaag tgcaaagttg catctttaaa atcaactaat
     7621 tttccatcca tccaaatttt atctgctgag atcatttttt taccttttat agttgtttat
     7681 ttcttaaaaa atattatttt aagaataaat cgggatttta tcaaaaatat actaacaata
     7741 agcttttatt aaattaaggt tttttgttaa aaaaaatatt aggtattttt tgaaataatt
     7801 atgaaaaatt atcgttaaaa aaggagaaat tatgccatta gtaaatatca aattagcaaa
     7861 gccgtcttta agcaaggaac aaaaagcgga acttatagct gatattactg aacttttaag
     7921 cacgaaatat aataaaagta aagaaagagt tgttgtggtt ttagaagatg tggaaaatta
     7981 tgacataggc tttggcggag aaagtgtaga agctatcaaa gcaaaggcaa ataaatgagt
     8041 ttaaatatag gagataaggc acctcaattt gagcttttaa atcaagatgg ggtaaaaata
     8101 gcattaaaag attttattgg caaaaaggtg attttgtatt tttatccaaa agataatacc
     8161 ccaggttgta ctacagaagc ttgtgatttt agtgcaaatt atgataaatt tggtggtaaa
     8221 aatgcagtga ttattggtat tagtcctgat agtgtgacaa gtcatgaaaa atttatttct
     8281 aaatttaatt taaagcatat tttacttagt gatagcgaaa aagaagttgt taaagcttat
     8341 agagcttggg ggcttaagaa aaattacgga aaagaatatg aaggcatcat tcgttctact
     8401 tttgttatcg atgaaacagg taagattgct caaatttata gtaatgttcg tgtaaaagat
     8461 catgctttaa aagtgcttga aagtctttaa tgctggtgca tatttgttgt agtgtagata
     8521 gtcattattt tattgaagaa cttagaaaga cttatcctga tgaaaaaatc ataggatatt
     8581 tttatgatcc aaatatccat cctttaagcg aatacgaact aagattttta gatgtaaaaa
     8641 gatcttgtga taaacttggc atcaagcttt ataaaggtga gtatgagtat gaaaaatggc
     8701 ttaatgctgt gcgtggttat gaagatgagc ctgaaaaagg tgcaaggtgt gaaatttgct
     8761 ttgatgtaag aatgggatct agtgttaaat ttgctgctaa aataggagaa aaaaagctta
     8821 ctactacgct tttaaccagc cctaaaaaag atttagaaca gttaaaaaat gctttacaaa
     8881 aagaatgtga gccttatggg gtggagtttt tagctcctga ttttcgtaaa aatggtggca
     8941 ctcaaaggca gtttgcttta gcaaaaaaag aaatgctcta tcatcaaaac tattgtggtt
     9001 gtatttatgg gcttaaaaaa caaaaacaag ataagaattt cattgatgaa ttaatgtctt
     9061 ctgtaaataa gcaaatttta cctgcaagta tagaagcaag aatagctctt tataaaaaag
     9121 tagttttatg ggaaaaaaag ggtataaaat ttgaaatttt aagagagaaa tttttaaatt
     9181 atcgtctttt aagcgctttg ataaaattag ataaaaagcc tgttaaatct catattttat
     9241 tttattcgca ttttaaaaac gcttatacaa gattttcttt aaatgaagaa agcttaaaac
     9301 agaatttaaa agaaggtttt tatagaagca ccaaagatga aatggttttt gtagaatttt
     9361 ggcgttttaa tacatttttt aaaaataaat ggaaaaattt tgaagatttt ttaaaaagac
     9421 ctttgagtgt gcaagcagaa attaaatggc gcaataaatt gtttggaact tataatctta
     9481 gccctattat catccttgaa aatattttac cttcaagata tgaagtgata gcaaaaagtg
     9541 aaatttatca tgataatcaa g
//
LOCUS       DAZAND010000074         9533 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.074, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000074 DAZAND010000000
VERSION     DAZAND010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9533
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.074"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            66..821
                     /locus_tag="ACHDOB_001347"
     CDS             66..821
                     /locus_tag="ACHDOB_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HFN3326268.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKDIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(845..1483)
                     /locus_tag="ACHDOB_001348"
     CDS             complement(845..1483)
                     /locus_tag="ACHDOB_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFN3326269.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1480..2469)
                     /locus_tag="ACHDOB_001349"
     CDS             complement(1480..2469)
                     /locus_tag="ACHDOB_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN3326270.1"
                     /translation="MAYLKIKNFKKAYGGKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEVGDKIALKFNLSLAKELK"
     gene            complement(2473..3252)
                     /locus_tag="ACHDOB_001350"
     CDS             complement(2473..3252)
                     /locus_tag="ACHDOB_001350"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3326271.1"
                     /translation="MNENLSLKAKIYHYVVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3253..4092)
                     /locus_tag="ACHDOB_001351"
     CDS             complement(3253..4092)
                     /locus_tag="ACHDOB_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3326272.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFILAPSKICNFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPTLFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            complement(4089..4898)
                     /locus_tag="ACHDOB_001352"
     CDS             complement(4089..4898)
                     /locus_tag="ACHDOB_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HFN3326273.1"
                     /translation="MMSKVILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKLSFSKQTSIFDLCKEQGLKAGSAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYTNKTKKVDVLISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSICEILGLKHDKRYNDEILKAKK"
     gene            complement(4895..6220)
                     /locus_tag="ACHDOB_001353"
     CDS             complement(4895..6220)
                     /locus_tag="ACHDOB_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HFN3326274.1"
                     /translation="MKKVILTSAMLCSVLFGIQEHEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDAMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQLINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPNL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKSDDNEFILLEVKDFLKSK"
     gene            complement(6231..7277)
                     /locus_tag="ACHDOB_001354"
     CDS             complement(6231..7277)
                     /locus_tag="ACHDOB_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HFN3326275.1"
                     /translation="MSKKFFLSLGLVVLLFSNSQAIDENLIKAVQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALSGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYENARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7394..8377
                     /gene="corA"
                     /locus_tag="ACHDOB_001355"
     CDS             7394..8377
                     /gene="corA"
                     /locus_tag="ACHDOB_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HFN3326276.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8398..8940
                     /gene="mog"
                     /locus_tag="ACHDOB_001356"
     CDS             8398..8940
                     /gene="mog"
                     /locus_tag="ACHDOB_001356"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HFN3326277.1"
                     /translation="MDTINIGVLTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(8937..9122)
                     /locus_tag="ACHDOB_001357"
     CDS             complement(8937..9122)
                     /locus_tag="ACHDOB_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HFN3326278.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLVRANKF"
     gene            9249..>9533
                     /locus_tag="ACHDOB_001358"
     CDS             9249..>9533
                     /locus_tag="ACHDOB_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family peptidase"
                     /protein_id="HFN3326279.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLISSNTRFENTLFLL"
BASE COUNT         3466 a         1589 c         1262 g         3216 t
ORIGIN      
        1 agacttaatt aaatataaat ttaaaataag tataatttta aaacatttta tatcaaagga
       61 aaaaaatgaa aaaaatatta agcattgctc tagttgcttt agttggttta tttttaggtg
      121 cttgtagtga ttctaaaaat aaagaatcaa atgcaagtgt agaattaaag gttggaactg
      181 ctccaaatta taaacctttt aattataaag aaaactcaaa acttacaggt tttgatactg
      241 atttggttga agagattgcc aaaaaaaatg gtattaaaat tgtttgggtt gaaaccaatt
      301 tcgatggatt gattcctgct ttaaaagctg gcaaaatcga tatgattgcc tcagctatga
      361 gcgcaactga tgaaagaaga caaagtgttg attttacgaa accttactat atgagtaaaa
      421 atctttatct taagctaaaa aacaacgact ctcttcaaac aaaaaatgat ttagaaggca
      481 aaaaaatagg agttcaatta ggaactttac aagaaaatac tgcaaaagct atcaaaaatg
      541 cacaagtaca aagcaataaa gatttaaaca tagctgtttt agcactaaaa aacaacaaaa
      601 tcgatgctat tgtagctgat caagatactg ctaaaggttt tttagctgaa aatccagaat
      661 tggtaagttt ctaccaagaa acagatggag gagaaggctt tagttttgct tttgataaaa
      721 ataaacaaaa agatattatt gaaatattta acaaaggcat agatgaagca aaaactgatg
      781 gattttatga tactttaatt aaaaaatatg aattagaata agcgtgaatt ttcacgctta
      841 tagcttaaaa agttaaaatt tcatattttc tctcttttgc aatttttaaa attttttcat
      901 caccattaca tacaaaggct ttgctaacag actctagtaa aggtaaatca ttgatagaat
      961 cactaaaaaa ataagaatct ttcatccatt tttcataatc tttacccaaa tattccttaa
     1021 gtcttaaaac cttgccttcc ttaaagctat aaatcccata agcttttcca ctaaatttat
     1081 cacccacacg ctcgcatttt atggctatgc tttctctcac tcccaaaaaa gaggcgattt
     1141 ttctaactaa aaattcagcc gtagctgaaa ttataataca cctttgatct tgatatttga
     1201 ttataagttc tttagctttt tcataaggtt ttatataaat ttttataaat tcatctacta
     1261 aagatgaaat tctatcttca tttttaccct taacactttg aagaaaaaaa gtcataaatt
     1321 catccatatc aagctttttt tcttgatatt gtttttgata aaaaacaatt ttttctaaat
     1381 attcttgagg taaaaaacct ttttcaacac aaaatttaag ccaaagttta gcactatcgc
     1441 cttgtattaa agtatcatct aaatcaaata aaacaagctt cattttaact cttttgctaa
     1501 agaaagattg aattttaaag cgattttatc acctacttca taagtactat gagtgctaaa
     1561 atttaaagta tctaccttaa attcaatttc ttgcactcta accctatagc gtatgatatt
     1621 acctagcaat gatttttctt tgatcttagc ctctaagcct tcgttagaaa tttctatggt
     1681 ttcaggacgc aaggctatat cttttttaaa atcgtgtttt aaacccaagc tatcaagctc
     1741 tttagggctt aaaatattgt aatttcctat aaagctagcc acaaaatgag attctggcaa
     1801 aagataaaga ttgtttgcgt tggaattttg tatgatttta ccctcattca ttaaaataat
     1861 cctatcggat aactctaaag cttcttcttg atcatgcgtt acaaaaatag tggtgagttc
     1921 aagttctttt tgaatttctt taatttgcac ccttaaatgc ttacgaattt tagcatcaag
     1981 tgccgataaa ggctcatcaa gcaaaagtaa atcaggttta gtcaccaaag atcttgctaa
     2041 agccactctt tgcatttgtc cgcctgaaag cttatgtgga taagttttag cgtattcttc
     2101 aagctcgacg agttttaaca tttttttcac tcttttttct atgtcctttt tatccatttt
     2161 tttgatcttt aaaccaaaag ctacattttc aaaaacgtta agatttggaa aaagagcgta
     2221 attttgaaaa accataccta tatttctttt ttgaggactt aatttagtaa gatctttatc
     2281 atttaaagaa atttttcctc cattaatttg gctaagccct gctatacacc ttaaaagagt
     2341 ggattttcca cagccacttg ggcccaaaag ggttataaac tcaccctttt tagcactaaa
     2401 attaatatct tcaaaaataa ttttaccccc ataagctttt ttaaaatttt taatctttaa
     2461 ataagccatt ttttactcct taatcaaact agctataaaa gttgttataa aaattaacac
     2521 aaaataaact attaccaaag cactagaata atgcccactt tgatttttga tattataaag
     2581 ataaacttgc aaagtctcat aagcacttcc tacaagaata tttgcgtata aaaattcgcc
     2641 tattaaaaaa gaaaaactta aaaaaactgc caccaaaatt ccatttctta aattaggcaa
     2701 gacaagctta aaaatcgctc ccattaaaga acctccaagc atagcattag atgcgatgag
     2761 ttcatttaaa ttgacattag acatagcatt atctaaagcc ctatatataa aaggcaaagc
     2821 tatagtaaaa taagtaaaaa tgagtatcca agctgtgcct cctatattgt cagcataaag
     2881 ttgcaaaagc cccacacagc taactatagg aggtacagca aaaggcatga taataagtat
     2941 atttacaaag gcttttaatt ttaaaaaata ataatttagc acaaaaacca aaggaaaaac
     3001 aagaatcaca gaaagtaaaa tactgcccac acaaacaagc aaagaatgcc aaagagcaag
     3061 taaaaatctt tcgtcatgaa aaagttcttg ataccattta agcgtaagat catcaggcaa
     3121 aacacttaca ccccaagaag tggaaataga atataaaaaa gtagccatta aaggcaaagc
     3181 taaaaacaaa aaaaccaaaa acaaaactac ataatgataa attttagctt ttaaactcaa
     3241 attttcattc atttaaagca ccttaaaatt atatttttta gaaaggaaat tggctataaa
     3301 ggtaacaaca agcatgataa tagttataat gatacttaaa gcactagcca tataaggatc
     3361 aagattgata tcgcctgcga ttaaagcagc gattcttaca ggagcgacat taaaatttcc
     3421 cgaacttaaa gcataaatag tcgcataagc tccaaaagca ttggcaaata aaatcacaaa
     3481 aacaccaaac aaagtaggag cgagcaaagg caaagctatt tttaaccaat ataaaaaatt
     3541 gcctccacct aacattttac aagcatttaa atgtgaattt tcaagacttt taaaagctgg
     3601 aagcaaaagc aagatcgcca aaggaatttg aaaatacaca taaacaatat ttaccccgaa
     3661 attagcataa acactaacaa aaggctctat acctaaattc ttcaaaaaca cattaactac
     3721 accattgctt ccaagaacta taatgaaagc aaaagctaaa ggaactcctg aaaaattact
     3781 tatcatagta tttaaagaaa agagaaaatt acatattttt gatggagcta aaataaataa
     3841 agaatagctc gccaaaagcc ctattaaaag tccaaaaata ctagaaataa aactgatttg
     3901 taaagaattt ataatgcttt gtagatagaa tttggactca aaaatatgta taaaattggc
     3961 taaagaataa atttcatcct cttctacata aaaagcatta aaaacaatcc aaatcaaagg
     4021 tgctatcata aaaaaagtaa aaactataaa aaaaggtaaa atacttaaaa aggctagaaa
     4081 tttttctttc attttttggc ctttaaaatt tcatcattat atctcttatc gtgtttaagt
     4141 cctaaaattt cacagatact gccacaaatt tcatcctgtt ttatcttggc attttcatac
     4201 gaaaaagcac taccaaaagt gaaaaaaggc actaaaattt catcttcgct taagcctcca
     4261 tgacttttac cctctgtcat accatgatcg cttgtgatga ttacattaat accttgttct
     4321 aaccaagtgg gcaaatactc agaaatcaaa acatcaactt ttttggtttt attagtatac
     4381 tcaatagagt gtgagccaaa tttatgtcct gcatcatcta tattcataga atgtataaga
     4441 gtaaaatcta aattatattt gtttcttaaa tgctccccat ctgcaaataa atgagaatct
     4501 aaataatcat cttcataata aaaatgtcca taaggcaaag ttaaattttc atcttctata
     4561 tggcgatgta aagaaggaat aaattctttt ttattataaa gctcaaaaac ccaatgataa
     4621 gccgcacttc cagcttttaa gccttgttct ttgcaaaggt caaaaatgct tgtttgtttt
     4681 gaaaaactca atttattatt aattatccca cttaaaacag gctttacgcc tgttaataag
     4741 cactcgtata aaggacgaga catactagga agttcgcatt ctaaagaata aaatttgccc
     4801 aaattctctt tgcaaagcgc atttaaatat cccatattta tactagcgct tttacaattt
     4861 aagccatcaa gcacaactaa aataactttg gacatcattt actctttaaa aaatctttta
     4921 cttcaagtaa aataaattca ttatcatcac tcttattagg ttctctgctt gaagaataag
     4981 gaaagttatt gtcattttct acaactatat gagagtcatc tactatatcc acaccttcta
     5041 tggtttcaaa aggaaaaaca aatttatcat ttactaaagg ctttttagaa attttatttc
     5101 tatccttaat atttaaaaga tctatataag aaattttttg agcttcatga gttttatcat
     5161 ctaatttaac cttataaatt cttttaaatt gagctacatt attaaaacaa tgcttagtat
     5221 cttcaccttc tttgcaagcc ttatctttag tgccttcttt ttgatctctt tctatgatga
     5281 tgccgtattt atcatctatc atattaaaat cacctatgga atggctttta tcttctaaga
     5341 aatatttata agtttttccg gtgaattttt tattttttac atcaaattct atgattctta
     5401 gatattcttt acctttttca ttctcataag cgttgttatt gtaaatgctt ccttctaaaa
     5461 gcaaataaag tttagaacca tctttagagc ttgccatagc ttcaaagcct ttagaacgct
     5521 tgatattaaa tttctcattt tctccatcag gcttatcgct aaattttaaa tttggattat
     5581 caggagaaat aagtttttta ccctccacat acacatcaaa aacttctttt aaattcccat
     5641 tcttatcaaa atgaagcaaa taaggaccaa attcatcacc tatataaaat tcatcattga
     5701 taagctgtat actctcagta tcaaaatcag ccccacttaa atacctttct ttggttgttt
     5761 cggtggttat aggataaggg tattttttat cactatcttt aaaaaaaact gtttttaaaa
     5821 gttcgtattt tgagttttta aaatcaaatt taaactcgtg agcataaagc atagcatcat
     5881 aagaattata ctttttaccc aagccattat cactaatcac ccaaaaaaca tctttttttg
     5941 gaatatattt tatcccacta tgtccttgta taggttgatt tttaaaaggt aaataaaaat
     6001 ctgtttccct gtttccctta gatttaaaag ttccaatttt ttcttctcta gtgatatttg
     6061 caaatttccc ataagtttta aaaaaatcag gagcatcctt aggaggtttt actgtacttt
     6121 tagaatctat gataatatgc cctgctaaat tggcctcatg ctcttgaatt ccaaataaaa
     6181 cactgcaaag catagcactt gttaaaataa cctttttcat ccaatctcct ttatttcata
     6241 tccactataa ctttttcttg ccaaagttgt ggcaattctt tagcgctttt ttcccaagct
     6301 ttttgatctt tgattgctct tgcattttcg tattgctcac ttggtaaaag tttagctttt
     6361 atatcatctg gcaaggtaat atgatcaatt cttattggcc ttgcataacc ttttgctaga
     6421 ttgatttgtc ctttatcaga aagtataaac tcacgagcta atttagccgc atttggatgt
     6481 tttgcgtatt tattgataat agttgtatag cccgaaataa cactaccatc agcagggatt
     6541 aaaacttcat aacgatcttt gcccacttta tctctatagc ctaaaccatt aaaatcccaa
     6601 actaaaccca cttcaacttc acctttttca agattagcta tgcttacatc attatttaca
     6661 agtcttcctt gtttggctaa agtattaaaa aaagctaaag caggacttaa atctttttca
     6721 tccccactta aggcataatt agctgccaaa actgcactca cagcttgagc tgctacactt
     6781 acatcaccca cggtaatttt ataatttccc ttaagcaaat cttgccaagt tttaggtata
     6841 tcttttacta catctttatt gactataaaa gctatggttc ctgtataagc taaaagccaa
     6901 tttccatctt tatctttagc ccaagttgga atttgatccc agtagcttgt cttaaaaggc
     6961 tgagctactc cttgtttaac cgctatctct ccaaaagaag ctcctacatc ccctatatca
     7021 ccgcttgcat ttttcttttc ggctttaaat ttagcaattt cttgagctga actcatatct
     7081 gtatcactat gttctatgcc ataaagattt ttaagatctg cccaagtatc cttccagttt
     7141 gcccaagtat caggcatagc taaagaattt accctacctt ctgcttgcac agctttaatc
     7201 aaattctcat caatagcttg tgaatttgaa aacaataaga caacaagacc taaacttaag
     7261 aaaaatttct tactcatttt tttcctttca aaaaatattt tggaaattta atgagtttta
     7321 gaaacatttt agaaacaagt taatttttaa gcaaacaagg ttataatttt aaagtcataa
     7381 acaaggagcg atcatgcttt atatttatat caaaactcaa aatgctttag ttcaaagaat
     7441 caattttaat ctcgatagtc aagaactacc acaaaatatt ttatggattg atttacttca
     7501 tccaagtgca gcagaaattg cttttatatc aagtgaattt aatcttgagt ttcctacaaa
     7561 agaagaaagg gaagaaatag agcttagcgc aaaatattgg gaagataatg cgacaataac
     7621 catcaatgct cattttttag taagagatct taaaagcgat gaagaagata ggaatttaat
     7681 caagcttcgc acagaaattg ttacttttgc taccgctaaa aatatcttat ttactataag
     7741 atataacgaa tttagcactt ttgaagaaat tcaagcaagg attttagcta gtccgaagaa
     7801 ttttgaagat ggttttgata ttattgataa aatgtttgaa gtgcgtgttg aaaaagatgc
     7861 ggatttacta gaatggatag ataaagaagc aagacgctta agaacaagtg ttttagaaaa
     7921 aaaagatgaa tatagttatg atgaaatgct aaaggatatt tcaagtttac aagagcttaa
     7981 tatgcgggta agagattctt tgtttgataa gcgtcgcgct atgacttctt tgctaaaaag
     8041 cgataaaatc gataaagata taaaacaaaa tctcactata gttttaaaag acttaaattc
     8101 tttggttgaa tttagtgttt cacaacttaa tatcttagat aatatccaaa ccattttagc
     8161 cagccaaatc aacatagaac aaaacaaaat cattaaaatt ttcaccgttg caactgttgc
     8221 catgatgcca cctactttaa taggaactgt ttatggtatg aattttaaat tcatgcccga
     8281 acttgaactt cactatgctt atcccatagt gcttggcgtg atggtaattt ctatcatttt
     8341 acctttggtt gttttcaaga aaaaaggatg gttataaaaa tttattaagg agaaacaatg
     8401 gatacaataa acataggagt tttgacccta agcgatagag caagtagtgg tatatacgaa
     8461 gataaagcca ctgctgaaat tgaaagagtg ttaaattcat atataaaaaa tgatattatt
     8521 tatcataaag aattaatccc tgatgattat gatttgatca ttaaaaaatt actttatcta
     8581 gcagatgaaa aaaaatgcga tttgattgtt acaagcggag gtacaggtcc agcacttcgt
     8641 gatgtaaccc cagaagccac ggaagccgtg tgtgataaaa tgatgccagg ttttggagaa
     8701 cttatgcgct tagaaagttt aaaatatgtc ccaacagcta tactttcaag acagagtgca
     8761 ggaattcgca ataaatcttt tatcattaat ttaccaggaa atcctaaggc tataaaagaa
     8821 tgcctagagc ctgtttttcc agctatacct tactgtatcg atttgataga aggtgcttat
     8881 atagaagcaa atgatgaagt tattaaggtt tttcgtccta agaaaaaatg tcaaaattaa
     8941 aatttattag ccctaacaag tctgcttaat tgtctagcaa gtagacttgc tgaagcttca
     9001 tctttgctta tcttttgtac tttattttta aacttacaaa gcctgtcatc taaaatcaca
     9061 tcattgatcg gaattttagg cttttctttt tgcttttgtg aaatcttttt cttaaaaaac
     9121 attctttaat ccttttttat aaatatacat caacttagtt gaaaagaata ttattttaga
     9181 ttttaaacta ttaactttat ttcattattt taagctagaa ttcgaaaaaa accaatcaag
     9241 gaaaaataat gactttaatt gcaattttat gtctttacac agcgctttta tcttggattt
     9301 cctatgctca aattcgtttc ttagaaagag aaaaagacaa acaagctcaa attttaagcg
     9361 aaaaagacta tcaaaatgca gcagatattg ccatcgaaaa tgaaaaattt aaactatttt
     9421 ccaattttta taatttaatc atcaatattg catggatagg ttttggattt ttatatctta
     9481 aagaattgct tatctcaagc aacactcgtt ttgaaaatac tttattttta tta
//
LOCUS       DAZAND010000075         9493 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.075, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000075 DAZAND010000000
VERSION     DAZAND010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9493)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9493)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9493
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.075"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..355
                     /locus_tag="ACHDOB_001359"
     CDS             <1..355
                     /locus_tag="ACHDOB_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HFN3326280.1"
                     /translation="KKEEILKDYFFEKLKTIPNLILYAKNLKTRLPIFAFNIKGISPF
                     DIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYTHEKEDID
                     YFFNALNKTIVKLSH"
     gene            complement(352..1176)
                     /gene="purU"
                     /locus_tag="ACHDOB_001360"
     CDS             complement(352..1176)
                     /gene="purU"
                     /locus_tag="ACHDOB_001360"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HFN3326281.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVLPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIHNNKTIIF"
     gene            complement(1173..2291)
                     /locus_tag="ACHDOB_001361"
     CDS             complement(1173..2291)
                     /locus_tag="ACHDOB_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HFN3326282.1"
                     /translation="MQISKISLKNNSDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKLKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELGLEKQVFGFESVFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     KKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLVK"
     gene            complement(2260..2751)
                     /locus_tag="ACHDOB_001362"
     CDS             complement(2260..2751)
                     /locus_tag="ACHDOB_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HFN3326283.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQSEILNP
                     SVITEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(2748..2996)
                     /locus_tag="ACHDOB_001363"
     CDS             complement(2748..2996)
                     /locus_tag="ACHDOB_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFN3326284.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(3075..3248)
                     /gene="tatA2"
                     /locus_tag="ACHDOB_001364"
     CDS             complement(3075..3248)
                     /gene="tatA2"
                     /locus_tag="ACHDOB_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HFN3326285.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKAQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(3258..3596)
                     /locus_tag="ACHDOB_001365"
     CDS             complement(3258..3596)
                     /locus_tag="ACHDOB_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HFN3326286.1"
                     /translation="MNNLSSVLILVKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENIR
                     YYGSVFNQFS"
     gene            complement(3589..4503)
                     /locus_tag="ACHDOB_001366"
     CDS             complement(3589..4503)
                     /locus_tag="ACHDOB_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HFN3326287.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDVFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLVAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPNGELAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIISGFGDSIMFRSIDE"
     gene            complement(4508..5032)
                     /locus_tag="ACHDOB_001367"
     CDS             complement(4508..5032)
                     /locus_tag="ACHDOB_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HFN3326288.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(5029..5811)
                     /gene="napH"
                     /locus_tag="ACHDOB_001368"
     CDS             complement(5029..5811)
                     /gene="napH"
                     /locus_tag="ACHDOB_001368"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HFN3326289.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRFFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(5808..6548)
                     /gene="napG"
                     /locus_tag="ACHDOB_001369"
     CDS             complement(5808..6548)
                     /gene="napG"
                     /locus_tag="ACHDOB_001369"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HFN3326290.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFDAKKATNYLNDGEL"
     gene            complement(6566..9340)
                     /gene="napA"
                     /locus_tag="ACHDOB_001370"
     CDS             complement(6566..9340)
                     /gene="napA"
                     /locus_tag="ACHDOB_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009325 - nitrate reductase complex
                     [Evidence IEA];
                     GO_function: GO:0008940 - nitrate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_process: GO:0042126 - nitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HFN3326291.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFEEFKKGLAPYTLEYTAKVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKIADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFAGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
BASE COUNT         3173 a         1827 c         1129 g         3364 t
ORIGIN      
        1 aaaaaaagaa gaaattttaa aagattattt ttttgaaaaa ctaaaaacta tacctaattt
       61 aattttatat gcaaagaatt taaaaacccg attgcctatt tttgctttca atatcaaagg
      121 aatttctcct tttgatatcg cttacgaact tagtaaaaaa taccacatag aaacacgcgc
      181 tggatgtgct tgcgctgggc cttatggtca tgatttgcta ggcttaaaag acaatcaaaa
      241 acttaaaaca aaaccaggtt ggttaagaat aagcttgcat tatacacatg aaaaagagga
      301 tattgattat ttttttaatg ctttaaataa aactatagta aaattatcgc attaaaatat
      361 tatagtttta ttattatgta taaaaattct atcttcaaaa gccaaatcaa gtgcttttga
      421 aagaacatct ttttctatat ttctacctgc ttgttgcata tcttgccaag taaattcatg
      481 gtttacaggt aaaacagctt gagtgataat aggaccttca tcaagattat tatttacaaa
      541 atgtgccgta gctccaatta ttttaacccc tctttcaaag gcttgtttat aaggatttgc
      601 tcctataaat gcaggtaaga aagaatggtg aatatttata atcttacctt caaaatgcct
      661 aacaaaatca ggagataaaa ttcgcatata ttttgccaaa accaaataat caaatttata
      721 ttgttcaaga cattttaaaa tctgattttc ttgctctttt cgatctaaat tttcagcgct
      781 gataaaatga taaggaattt caaatttctc aactaaatcc tttaaagagt tgtgatttga
      841 aatcacagct ttgatatttg cttcaagttc gttactataa tgctttatta gcaaatctcc
      901 caaacaatga ctttctttag tagcaaaaac aacaatatct ttttttctct tctcgcaaag
      961 ctctatcaag gcttcttgtc caagcatagc ctcaagcgtt cctataaaag cttctttatc
     1021 aaactcacct tctaaaagag cacgaaaaaa aaacattcct tcgcctacaa attcatcgtt
     1081 ttttactata ttgatatgat atttaaaaat aacatcagaa attctataaa ttaaaccttt
     1141 ttgatctttg gtgcaaattt ttaatacaga aatcatttaa ctaaaccttt tatatattct
     1201 tttaattcat tctctcttgc ttcttgaagc tttagaccaa gaattttacc acaaaatcca
     1261 gcatttatga aatcttttgc taaaatttta ctttcaaact tattctcata aagccctaat
     1321 cttttagctt gctcaatacg ctttttactc caaagtccaa gccattcctt caatggcatt
     1381 tcaaaagcaa tttttgctag ttcaaaatca cttatatcat caagataaaa agcttgattt
     1441 gcgtatttta ggtattcttt tttaagttta gttcttttaa aaaatatatc tttttctaaa
     1501 ttaaaaaaat tcaaatacaa atacaagaat aaagcatcgc tttttacaaa ttctctactt
     1561 tgtctgagta aattttgaaa ttccaaactc ttaaaaacac tctcaaagcc gaaaacctgt
     1621 ttctctaagc caagttcttg taaatatcta tagccgacat caagtctagg acttttaaag
     1681 aatttataaa gctccgcatt gatcctatct ttactaagat cagttatatc catactttgc
     1741 atcaatttca agctttcact agttatctta aagttaaacc ttgaggcaaa tactactgct
     1801 cttaataccc ttaaactatc ctcttgaaag ctttgtttgt caatatgcct taaaaagcct
     1861 gctcctagat cttttaatcc tccgtaaaaa tctaaaaact catcgttaaa aagattaatc
     1921 atcatagaat ttatggtaaa atcgcgtctt ttggcgccaa gtttttcatc attgcaaatt
     1981 tgaacttcaa aacctttatg tccatagctt attttgtttt cggttctagc aagagctaaa
     2041 tcataatttt taaacttata cacaaaaaaa ctttttccaa agccttgtgc gcccaatttt
     2101 tgcataatct tttcaaaatc tttaagtttt atatcataaa gctctatatc atagtcacaa
     2161 atttttaaac ctaaaaacaa atccctaaca ctacctccaa ccaaatacgc tcgtttggta
     2221 taaggcttta aaaactcagc aataaactgt aaatcggaat tattttttaa gcttatcttc
     2281 gatatttgca agtaaaaact ctaaaaaatt tatggtcaag tttaacctat tttcaagatc
     2341 atcttttttt atactattta aaccttcaaa aagaactaaa attctctctc taagatgttt
     2401 taaaaaaata tcctcattaa gcgtttgaac ctctgttata acactaggat ttaaaatttc
     2461 actttgtaaa aaaggctctt cttttttaaa ctctttattt tcctgagtag aaatttcaat
     2521 attattttgt attttttgct cttcttcaaa ttttgccata gaaattttat cttctaagtc
     2581 ttgcggagta tcgagctctt cgcatacaaa ctccataggc ggtaattcat cttttatttc
     2641 agtttttcta tttaattctt gttcttttaa aatttcattt tgtcttcttt gctcttccat
     2701 gatagagcta acttcgctaa tggttttttt agctaaatct tccaaattca tatttttatc
     2761 aaccaccttt taaattcatt aatttcttca tcgcttttca tattaataaa aaaatccaac
     2821 atttgagtgt ttaaatcttt atgcttggat ctaaaaccac taagacgacg aaccgcatcg
     2881 atagcgtttt ggttatctgg atcttctttt aagatatttt tataaatttc taaagcttcg
     2941 tcttttaacc cttgagcctc atagatagaa gcttcagtga ctgtattttt catcactgtt
     3001 tcctaaaatt tttctttaat tctagcaaaa agctttttaa tttatcttta agaaaataag
     3061 atgtttttta atgtctattt tgttttaaac aatttttcta tatattcttt tttttctttc
     3121 tctaagctag aatttaattc tttttgttct tttttaactt gcgcttttaa atcttgattt
     3181 ttaaaataca cataatcaat tccaaaaata acaccaatta taataagcaa tgggattaaa
     3241 aataccatct ttacacttta agaaaattga ttaaacacac taccatagta gcgaatattc
     3301 tcagcatttt catttttttc tatcgtttct attgcgccac tattgattgc tttttggata
     3361 tcatcattta aatcttgata agaaaaaacc atattaatac tgataatatt tggcaatttc
     3421 tcaagcattt tataagagtt taactcatct tctaaatttt cactttcaat cacaactata
     3481 atcttttcat tttcacaaag ttctacagaa caaaaaggaa tttcagatat agcctttttt
     3541 aaatcattta tatattcttc ttttactaaa atcagaacac tagaaagatt attcatcaat
     3601 actcctaaac attatactat caccaaagcc tgaaatgata aaatctttat tgtttaaaaa
     3661 aataataaac tcactcatca aattttcatt attaaaagtt ttaacaggct taaaatcact
     3721 tgtactaaaa acttcactaa ctccagcttc attatcgcta taaacagcca attctccatt
     3781 aggacttaaa gcgcaagtat atatcaaaaa atctttttgt aaaaaatttt gctcttcatt
     3841 ttttacaact cctatacgcc tatccgttcc acaacttaaa ataacattat ttttaaaatc
     3901 tacttgatag atattatctt tatgcatttt atcatagttt tttaacatct tccaattttt
     3961 caaatcaaaa agttctactt cgccactctc aaaacctgca actagtctac tcttatcttc
     4021 atttaaaact gcatcattaa gactagaatg ggaaaaatta aattttttta tattttttaa
     4081 acttttatca atcaattcta tttcagaacc aatagaaatc aaaagataag tattttcatt
     4141 gataaaaaat gcttttatta tgctattttc ttcgagcttt ttgatttgta aattttcctt
     4201 ataaaaactt aaatttttag caccaaaatc accctcgcta agtattaaaa gtgtatgttt
     4261 aaaaacatca atgttgtaaa ttttagcaaa atcatcacca taataatttt taatctttgg
     4321 caaagataaa agttctttta aacttttatc tttaatgtta tattgtaaaa tttcaccttt
     4381 atcagtgcct atatataagt tttgcttatc aagctttaaa gctgttatat tggcatttaa
     4441 tttcagctca taagcataag acaaaacaca aaaaagactc aaaataaaaa gaaatttttt
     4501 catttattta ctttacaccc tcattaatca catcaattaa atttgaacga ctttttaatt
     4561 gttcattttt aaattcaggt ttaaagctat ttcccactaa aggttttgca tcgctttgtg
     4621 gaacatgaca ctgagtacaa ttaaaacgac tatcgctaat catatctcct gtggttttat
     4681 tgtgtctaaa atcataataa tgactagcag gaagtggagt tgcaccagca tctgctgcta
     4741 tagccttatc atggcagctt aagcacatat tgttatcttt agttataggt aacaaatctt
     4801 caatagcatg cggaattaat ggtggtgcat tttcataaga acgctcaaaa cgagtagatt
     4861 ccccaggttg taaagttgtg aaatttgctt ccactaaatt tactttattt tcattttcta
     4921 aacttgcttt tctaagtcca atttgttccg aacttacccc actattcatt gcacaagcgg
     4981 caaaaaatac cactgcagca cttcctaata aaaccaattt cttcttcatc atttattcct
     5041 taaatcaaaa atattaaaat tcaaagcatc atcattacaa acttctatac atcttgcaca
     5101 ccttatacac tctcctgatt tcacgctagt actttctttt ccaaccatcc acaaaacctg
     5161 tttttcagga caaatacgga tacattcata acatttagtg catttatcac tatcatgctt
     5221 tattttaagc aaagcaaaac gagaaataaa agcataaaaa gctcctagtg gacaaaaatg
     5281 tgaacaaatt gccctagggc ttaaaaaagt atcgatacaa aaaagtataa aggctacaaa
     5341 aatccaagaa cttgtagcaa aaataatccc tctatgtatc attcctatat aagaaaaact
     5401 ttcaaacaca ggcaatgaaa atacaaaaga aaggactaaa accaagacca acacaaaata
     5461 gcgtaaattt ttaggtaaaa ttaaaaattt attattaagg gttaatttat ttcgcacaaa
     5521 agcagcaaaa tctgtgatta aattaacagg acaaacccaa gagcaaaaaa cccttcctaa
     5581 aagcaaacca tagataaaaa atataatcaa agctcctatt aaagccatta aatctatact
     5641 ccagcttgct aaaatgattt gcaaaaccgc aaaaggatcg cttaaaggta tggtattaaa
     5701 aaatctagaa gaacttaaat ttccctgcag gataaaatct gtagctttaa aactaaaaag
     5761 cgctaaaatt ccaagctgaa cgatgcgtct agcaattaaa tacttcatca cagttctcca
     5821 tcatttaaat aattggttgc ttttttagca tcaaaatgtt ttgaagtatc tgcatttttt
     5881 atacgtcctt catctttttc atcccagcct tttacataat gagatcctgc ttttcccaat
     5941 acatactccc ttggcaaaac acgaatggct ggtttttcag taatacaagc aagttcacaa
     6001 agcccacaac ctacacacac ttcatgatcc acactaggta gtaaaaaagc gtgcttggcg
     6061 gtgcgttcat tgcgtttaag ctcaagtttt aaagccctat ctatcaaagg acaagctcta
     6121 taacaagcat cacattgaat tccccagtgt gccacacaag aagcactatc aacaatagca
     6181 atacccattt tcaaagattc tataccctgt tctaaatgct ttttatctaa agcatcagtt
     6241 ggacattctc taatgcaagg aatatcctta caaagataac aaggaatttc tcttgcctta
     6301 aaaaaaggtg taccattttt tggactatct aacaagctag caagctttaa agtatcataa
     6361 ggacaggctt ttacacaaag cccacaacga atacatttgc ttaaaaatct agcttcatct
     6421 tcagccccag gaggacgcaa ggcataatta tcatcggctt ttaaagccaa attagccaaa
     6481 aatccacctc ctgtacataa acatgcagcc ttaaaggcac taacgaaaaa ttctcttcta
     6541 cctttcattt aatcaaaacc ctaaatcaag ccttataaat ttttacagca cattttttaa
     6601 agtcagtttg ttttgaaagc ggacaagtcg catccaaagt aactttattg atatatacat
     6661 tctcatcaaa ccacggcaca tatacaagtc ctacaggcgg tttgtttctt ccacgcatat
     6721 ctactcttgc ttttacttta ccacgacgag attccaccca aactaaatca ccttgattta
     6781 agcctaattt ctctccatct ttctcactca tatagcaaag tgcttcaggc acagcacggt
     6841 aaagctcagg cacacgcata gtcatagttc cactatgcca atgctctaaa acccttcctg
     6901 ttgcaagcca gaatggatac tctttacttg gtctttcagg tgctttcata aatggcctaa
     6961 agaaaatttt agccttattt ttaatactgt gctctttttc atctttagga gctattaaat
     7021 ccccatttgt aagcattttg ttaaaatcac cataaaaagc aaaatctgaa tttggagccg
     7081 cttttttagc ataataatca aatttagtat taaatctcca ttgtgtttcc ttgccattaa
     7141 ccacaggcca tcttaaaccc cttactttat gataggtatc gaaatccgct aaatcatgtc
     7201 cgtgtcctaa gccaaattta cgatattctt cccaaaggta tttttgaacg aaaaagccat
     7261 aacctgcaaa ttcttttcca tcactgcctt gaatttttct ctcatcacct ttaacatcag
     7321 tattatcaaa gccttttgcg atagcatcgt ttggattaaa gctttttgct tctttattgg
     7381 caaatagtac atcaaaaagt gtatcatctt cgctataacc catagctttt gcctcttcta
     7441 aaacacttgg caaggtaagc ttattatcca ctttttgctc tttccaaact tctttaagct
     7501 taaagcgttt tgcaaattct aaaatttgcc aagtatcact catggcagca cctacaggta
     7561 aaacttgttg tttccaatgt tgagttcttc tttcagcatt accataagca ccccattttt
     7621 cataaatcat agcacttggt aaaataagat cagctatttt tgctgaaatt ccaggataac
     7681 aatcacttac aacaataaaa ttatccattt ctcttgctgc tgcgatccag tgatttgcat
     7741 ttgcagtgtt ttgccatgga ttattcactt gcacccatgc aaatttaatt tttccatctt
     7801 ctaaatctct catgatatta agataaggag agcctggttt tgggttgatg gtctttgcag
     7861 gaactttcca aattttttca gaaatttctc tgtgttttgg attggctaca accatatctg
     7921 caggcaaacg atgcgagaaa gttcctactt ctctagctgt tccacaggca cttggctgtc
     7981 ctgttaaaga aaaggctcca ctacctggtt tagcttgctt tcctagtaaa aaatgcacca
     8041 tataagcttg ttcatttacc caagaacctc ttgtgtgttg attaaagccc atagtccaaa
     8101 aacttacgac tttgcgattt ttttctatgt aaagattagc taattcttga agttttttct
     8161 taaaatcctc caaagattca ttatcatcgc ctttggctac ttttgcagtg tattccaaag
     8221 tataaggggc taaacctttt ttaaattctt caaaagaaat ttcccagttt ttatcagcca
     8281 caccttgatg tttcatttca aatttatcac ccgctttaac gccaagataa gataaagaag
     8341 tagcctcttc atcgtctaaa gtgattacat tttctttttc aactgtatct ttttcacttt
     8401 ctttaaattt tggatgattt ggattatttc tcataccata accaatatca gcataaccag
     8461 ttgcaaatac gcagtgatct ttgataaatt tcatatccat agcctctgga tgattataaa
     8521 caatctctct tgctatgtag ttccaaatag ccaaatctgt atttggttta aaaataattt
     8581 caatatcagc aatatttgaa gtacggttag aaaaagtgct tagattaaca actttgactt
     8641 tatcaagatt acttagtttt ctatcactta ctcttgacca aaggattggg tgcatttcag
     8701 ccatattagc tccccaagtg atgatagtat ctgtaagttc tatatcatca taacagcctg
     8761 atggttcatc tacaccaaaa gtttgcataa aaccaaccac tgcagaggcc atacaatgtc
     8821 ttgcatttgg atcgatatta tttgttctaa agcccgcttt tgcaagtttt aaagcagcat
     8881 aaccttcttg gatggtgtat tgcccactac caaaaatccc tatacctgta acgccgagtt
     8941 cattgtaggc ttttttaaat tgtttttcca tttcatcaaa ggctctttgc caagaaactt
     9001 gttgaaattt gcctttttta tcaaattcgc ctttttcatt catgcgaagc aaaggcataa
     9061 caagacgatc ttcaccatac atgatcttag cattaaaata acctttgata caattaagtc
     9121 cgcgatttac gggtgctgca ggatcacctt ttgttgctac gattttgcca tcttttctgg
     9181 ctatcataat tccacagcca gttccacaaa atctacaaac agctttatcc catttccaat
     9241 cttcttcttg tgcaccaagc atagagcttg gaacactaag tcctgcaaca ctagcagcac
     9301 ttgcaatagc ggtattttta ataaaatccc ttctattcat ccttattcct ccaaaataaa
     9361 aaaatcatct tattataaaa aatggagtat aaaaatctct tgaaatttta ataaaaataa
     9421 taattttaaa gctctatttt ataggagttt tattgtcctt tttatattat tcttacacaa
     9481 aataaatatt aaa
//
LOCUS       DAZAND010000076         9392 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.076, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000076 DAZAND010000000
VERSION     DAZAND010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9392
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.076"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            115..3384
                     /gene="carB"
                     /locus_tag="ACHDOB_001371"
     CDS             115..3384
                     /gene="carB"
                     /locus_tag="ACHDOB_001371"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HFN3326292.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTVPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDNHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            3381..3803
                     /locus_tag="ACHDOB_001372"
     CDS             3381..3803
                     /locus_tag="ACHDOB_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HFN3326293.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(3804..4781)
                     /locus_tag="ACHDOB_001373"
     CDS             complement(3804..4781)
                     /locus_tag="ACHDOB_001373"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HFN3326294.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKGKRTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMD
                     FKKPLMNFEIYTELNQIISQSEREKACNDLLSDGIEQFCIAFEDILKAL"
     gene            complement(4781..5404)
                     /gene="serB"
                     /locus_tag="ACHDOB_001374"
     CDS             complement(4781..5404)
                     /gene="serB"
                     /locus_tag="ACHDOB_001374"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HFN3326295.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMAGEL
                     DFFESLQKRVSLLKGMSYKKVLELGSTLPLMHGAHELIQYLKSKNIQIVIFSGGFHEG
                     IDPAMQKLGINLSFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            complement(5404..5925)
                     /locus_tag="ACHDOB_001375"
     CDS             complement(5404..5925)
                     /locus_tag="ACHDOB_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HFN3326296.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            complement(5930..8239)
                     /locus_tag="ACHDOB_001376"
     CDS             complement(5930..8239)
                     /locus_tag="ACHDOB_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HFN3326297.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVAATDSNEKSTPQAEPEAPKQETTTPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPAESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLVEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            complement(8243..9199)
                     /locus_tag="ACHDOB_001377"
     CDS             complement(8243..9199)
                     /locus_tag="ACHDOB_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HFN3326298.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQVYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            complement(9192..>9392)
                     /locus_tag="ACHDOB_001378"
     CDS             complement(9192..>9392)
                     /locus_tag="ACHDOB_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HFN3326299.1"
                     /translation="AKKRYERYENLGFWVCEGHYHQNHQINKENIKYLNLASFAYERS
                     FFVVEYQQEIKFREQKLRGQNV"
BASE COUNT         3000 a         1566 c         1548 g         3278 t
ORIGIN      
        1 tatttcctag attaaaagca gagtgtttat tttttaaatt atatcgataa tttcaaagtt
       61 tataaaacta atttttgtta taatcagccc aaatttatgc tcttaggaaa atttatgcca
      121 aaacgaacag atattaaaag cattttactt ataggaagtg gtcctattgt gataggacaa
      181 gcttgtgaat ttgattattc tggaactcaa gccgcaaaga ctttaaaaga attaggatat
      241 cgtgtagtat taatcaactc aaatcctgca accatcatga cagatcccga atttgcagat
      301 gcgacttata tagaacccat aacaaaagaa agtattttaa gtattattaa aaaagaaaaa
      361 attgatgcaa ttttaccaac catgggtgga caagtagcgt taaatgttgc tatggaagtt
      421 tatgaaagtg gacttttagg agatgtgaaa tttttaggtg caaaccctga ggcgattaaa
      481 aaaggtgaag atcgtcaggt ctttaaagaa tgtatgaaaa aaatcggcat ggatttgcca
      541 aaatcgatgt atgcgtataa ttatgatgaa gctttaaaag ctgtagatga aattggcttt
      601 cctttgatga tccgtgcttc ttatacttta ggaggtgctg gaagtggtgt ggtttataat
      661 atggacgaat ttaaagaact tgccaatact gctttagctt tatcgcctat ccatgaaatt
      721 ttgattgaag aaagtttgtt gggttggaaa gaatatgaaa tggaagttat acgcgataga
      781 gcggataatt gtatcatagt ttgtagtata gaaaatatcg atcctatggg agttcataca
      841 ggagatagta ttacaatagc tccagcatta actttgacgg ataaagaata tcaagttatg
      901 cgtaatgctt cttttgctat tttgcgtgaa attggcgtag atacaggcgg aagtaatgtg
      961 cagtttgcta tcaacccaaa aaatggaaga atgatagtta tagaaatgaa tccaagagtt
     1021 tcaagatcaa gtgctttagc ttctaaggca acgggctatc ctatagcaaa ggttgcgaca
     1081 cttttggcag taggctttag tttagatgag attaaaaatg atattacagg aactcctgca
     1141 tcttttgagc ctgtgattga ttatattgta acaaaaattc ctcgctttac ttttgaaaaa
     1201 tttccagggg caaacacaac tttaggtaca gctatgaaaa gtgtgggtga ggtgatggct
     1261 ataggacgta cttttaaaga aagtatacaa aaagcacttt gttctcttga gcgttctttg
     1321 agtggttttg atagagtaaa atttgaagat agaaatgatc ttgtttttaa aattcgcaat
     1381 gccaatgaaa agcgtttgct ttatgttgct caagctttta gagaaggttt tagcgtagaa
     1441 gaactttatg agctttgtaa aatagatcct tggtttttaa cacagattaa agaaattgta
     1501 gattttgaag agcaaattga tatggatatt ttaaacaata aagctctttt gagaaaagca
     1561 aaaactatgg gtttttcaga taaaatgata gccttgcttg taaatttgaa agataattta
     1621 gaattaagcc aaaatgatat ttattatgca agaatgaagc aaaaaatcat tgcagaattt
     1681 agcgaagtgg atacttgtgc gggtgaattt gaagctttaa ctccttatct ttattcaagt
     1741 attaatgtaa gcgaacttac tcaaagtaaa aacgatgcta aggataaaaa agaaaaaaaa
     1801 gtgatgatta taggcggggg gccaaaccgc ataggacaag gtatagaatt tgactatgct
     1861 tgcgtacatg cttcttttgc gcttaaagat atgggtatta aaactattat gtataattgt
     1921 aatcctgaaa ccgtttcgac tgactatgat acaagtgata ttttgtattt cgagcctatt
     1981 gattttgaac atttaagagc ggtgattgag cgtgaaaaac ctgatggagt gattgtgcat
     2041 tttggcggac aaactccttt gaaatttgct aagcgtttaa gcgcttttgg agctaaaatt
     2101 ataggtacta gtgcaagagt aattgatatg gcagaagata gaaagaaatt tgctgaattt
     2161 attacaaagc taggtattaa tcagccaaaa aattccactg caacaagtgt ggaagaagcg
     2221 gtgcttaaag ctagtgatat aggatatcct gtgcttgtaa gaccaagtta tgttttaggt
     2281 gggcgtgcga tgcgtgtggt aaatgatgag gccgaactta gactctatat gcaagaagct
     2341 gtggatgtga gtgataaaag tcctgttttg atcgatcagt ttttagacaa tgctacagaa
     2401 attgatgttg atgcgatttg tgatggcaaa gatgtttatg tggcaggaat tatggagcat
     2461 atagaagaag caggaattca ttcaggcgat agtgcttgtt ctttaccacc ttgtaatatc
     2521 gatgaaaaaa tgcaagaatt tattgcacaa aaaaccgcag atattgcttt aaatttagga
     2581 gttgtagggc ttttaaatat acaatttgct ttacataata atgagcttta tatgatagaa
     2641 gtaaatccta gagctagtcg tactgtgcct tttgttagta aagctacggg tattccttta
     2701 gcaaaagtgg caacgcgtgt gatgtggcaa ggaaatttaa aagaagcttt aaaattttat
     2761 gatactttca aagtggttaa ttttgatact aaaattttac gccctaaaac tccaaaatat
     2821 atgagcgtaa aagaagcagt atttccattt gcaaaactta gcggaagtga tttagaatta
     2881 ggccctgaaa tgcgttcaac gggtgaagtt atgggtataa gtaaggattt tgcaaattct
     2941 tacgcaaaaa gtcaaatcgc atcgtttaat catctgccag agcaaggcgt ggtatttatc
     3001 tccttaaaag ataaggataa aaaatatacc aaaaaaatcg ctgcagaata tgtaaagctt
     3061 ggctttaagc ttatggcaac agggggaact tgtaaggaaa ttttagaaag tggttttgag
     3121 tgcgaacttg tacataaaat ttcagaagga cgccccaatg ttgaagataa attgaaaaat
     3181 ggagaaattc acttagttat caatacaagt gataatcaca gttttaaagg tgatacgaaa
     3241 aaaattcgtg aaaatattat tcgttttaaa ataccttatt ttacaaattt acgatcagct
     3301 ttagcaggtg caaaatcgat taaagctata cagagtaaat cttgcctaga tgtaaagagt
     3361 ttgcaagagt ggcttaaatc ttgatttatt tagctcaaac agatactacg gtaggatttt
     3421 taagtaaaaa tttagaagag attaatgctt taaaaggtag agataaaaat caaccttgct
     3481 taatcacttc tgcgaaattt tgcgagttaa aaagtttagc aagaattcca aaatctttta
     3541 aaaatttagt acgtcgttct aaaaaaacaa cttttattta tccaaataat caggccattc
     3601 gtattgtgaa agagtgtaaa catgcgaatt ttttaagtaa aaatggctat ttttattcat
     3661 cttcggcaaa caagcatgga aaagaatttg atgaagaatg ggctagaagt gttgctgata
     3721 taatacttga tgagaaattt ttcgaaaata tcccatcaaa aatattaaaa ctttcaaaga
     3781 ataaaatgat aaaaatacgt taattaaaga gcttttaaaa tatcttcaaa agcaatacaa
     3841 aattgctcta tgccatcgct taacaaatca ttgcaagctt tttctcgttc actttgagaa
     3901 atgatttgat taagttctgt ataaatttca aaattcatta aaggtttttt aaaatccatt
     3961 tttcctttaa atgcctctat tgcatcaaga ggagcagtat taacagaatt ctcaaaaaga
     4021 agttctttga tataatagtc ttttggcaga tcatctcctt taactccagt gcttgcaaac
     4081 aaggcgcgaa tattaggttc attttttgag tagatattgt tataagctaa atttgcattt
     4141 aaaattccaa tacgattttg ctctttggct ttaggattta aaagtctatc aaaacgactt
     4201 acaaaaatac ttataacagc ttgtggtgtt ctagtatttt gttcttttaa ggctatattg
     4261 ttttttctaa attcgactaa acctgcattt aaagcttcaa aacatttttg actttgttca
     4321 agagaaaaaa ttaaggtagc attgacgcta ataccatttt tcataagttc atacattact
     4381 tcataagaag cttttgtagc tggaatttta atcattacat tttctttgct aatagcacta
     4441 taaagtcttt tagcttcgcc taaactaaga gtcgtgttat catgaagtct tggatctatt
     4501 tcaatactta taaatccatc atttttttga taaaaaagag gggctaattt atcagctgct
     4561 ttttgaatat cagaaattgc taattcttca taaatatctt ttgttctttt tccttttaat
     4621 ttaagaattt tatctttata aattggagaa tttaaaatag catttttaaa aatagcagga
     4681 tttgaagtag caccattaat tccatgtgat aataaattta aaaattcatt atctaaaaaa
     4741 ctattttcta taaaatcaca ccaaagagaa aaatttttca ttatattacc tttattattt
     4801 cttttaagtc ttttatatct atgcaaatat cagcttggga acgtaaaatt tctttagcac
     4861 aaaatgcaat ctttaatcca ctttcgttaa acattgccaa atcatttgcc ccatcgccaa
     4921 cacacatcac ttcatctgtt ttcaaattta aaaagctttt taatcgttgt agcattaagc
     4981 cttttgaatt tgaaaacatc atttccccac caactagccc tgttaaaatg tcatttttat
     5041 gatgcagata atttgcaaaa ctaaggttaa ttccaagttt ttgcatagca ggatctatgc
     5101 cttcatgaaa accaccgcta aaaataacaa tttgtatatt tttagatttt aaatattgga
     5161 taagttcatg tgctccatgc attagtggaa gtgtgctacc taattctaaa acttttttat
     5221 aagacatacc ttttaaaagg cttactcgtt tttgaagact ttcgaaaaaa tcaagctctc
     5281 cagccatggc atggcgggta atttcgcttg tttgattacc cttgccatgc gctgtagcta
     5341 aaatatcgat ggtttcacca tccattaaag tagcgtcaaa gtcaaaaaca caaagtttaa
     5401 tcattaaaat tcgcgcttaa gtaaagcttc tactttgagt atagttaaga tattttcatc
     5461 tctttttcct ataccataaa tcataccttt gtctttaact aaagtttcag gtggtggatc
     5521 gattctgttt ctgtgaattt taattgcttc agttaatcta tctataacaa aaccagcatt
     5581 tcctccaact ccagttccat ttgtctcacc tcttaaaaca atatatcttg tttgaggtgt
     5641 cattttagaa cttcctaaat gaaagcgttg agctagatca atgagtggca taacattacc
     5701 acgcatatta aaaaccccta gaacataatc aggtacacta ggaactctag tatattctat
     5761 aggtttaatg atttcttgta tattaagaat tggaatcgca tattcctcat ctccaactac
     5821 aaagccgaca agttggatga tatcatcttc tctttgatcg acatcaggac cagccatctg
     5881 agtttgctgt ttttgcaaaa tttgctctaa tttttcatta ctcatattct tatcctagtt
     5941 tcaaattttt tctaaccaca ttttccaagt attctggaga ataaggttta gtgatatatt
     6001 cagtcatacc cacttcaaca cctcttaagc ggtcagtttt acttgttctt gaagtaactg
     6061 caatgagtgg taggttacga tatttagaat actttctaat ttcaccagct aaggtgtatc
     6121 catccattct tggcatttcg atatctataa gcattgcatc aatatcatgt tcgccagatt
     6181 ttataatatt caatgcttca acaccatttg ttgcttcaac taaactaact cctagcggtt
     6241 ctaaagcttt ttgcattaag gttctatcca ttttagaatc atctacaatt aagactttat
     6301 aatcacttgg ttgttcttta ggttttttcg cgcttgattc taattgcgct ttaatatcaa
     6361 ctttaatttc tttggccata tccatcatag cacctacatc aatgattaat gtcactctac
     6421 catcaccacg gattgtagct cctgctatgc cttggatatt ttgtaaataa tcacccatgg
     6481 atttaataac tatttcttct tgtcctacaa gagtatctac tataatacca agcttgcttt
     6541 ctgctacccc tataacaacg acataagttt gatcaccgct ttcaaggact tgtttaactc
     6601 caaatacatc tgaaagtctc acaagggaaa gcacttcatc tcttaagcgt aatacatttt
     6661 taccttcgat agtatagata tcatcaattg gtactctaac tgtttcaaga acgcttgcaa
     6721 gtggaattgc ataaaattct tcttgagttc ctacaagtaa agattgaatg attgccaagg
     6781 taagaggaat tttaagttta aacgaacttc ctttacctaa ctcactatca atttcaatta
     6841 ccccatttag tttttcgatg ttggttttaa caacatccat tcctacgcca cgacctgaaa
     6901 catttgttac tttagccgca gttgaaaaac caggtttgaa aatcaaagca aaagcttctt
     6961 tgtctgtcat ttgatctgct tctctttcgg taatcaaatt tttctctata gcttttgctt
     7021 ttaagccatt tggatcaagt cctttaccgt cgtctgtaat ttctacaacg atgtgattgc
     7081 cttcattata agctttaagt tgaactatac ctttttcagg ttttccatta gctgcacgag
     7141 ttgctggatc ctcaacacca tggtcacatg aatttctaat catatgcatg ataggatcgc
     7201 caatttcctc tacgatagat ttatcaagtt cagtttcttc acctgtaatt tcaagttcta
     7261 tttgctttcc taattcacga ctcaaatcac gaacaactct tgggaattta ttgaaaactt
     7321 ttgctatagg ttgcattctt gttttcatta cagcaagctg aacatcagtt gtaataatac
     7381 ttaattgact tacaacctga ttaagttctt caaggaattt ttctccttca taacgctctt
     7441 caacatcatc gtaaatttta agcaaacggt ttttacctaa aacaagctcc ccaattagat
     7501 tcattaagtg atctaatctt tttacctcca cgcgtatggt ttgatccata ctgctagcat
     7561 tgctacctga agcaggaact tttttctctc cactttccgc aggtttattt gctgtattgt
     7621 tagtcggttt aggtgccgca tttgttgttt gtttcttttg tgcgcgacga gcttgatctt
     7681 cagcttttct aacttttaaa agtctttcta tttcagcttc aacttcagaa tcacttaatt
     7741 gattaacatc tacttcaggt tcaggagtag ttgtttcttg ttttggtgct tctggttctg
     7801 cttgtggagt agatttttca tttgaatctg ttgccgcaac aggagactct ccttctgaaa
     7861 tagctgttaa tcttgcgcaa attggttcta tatccatacc aatagcagta tcgttgccat
     7921 tatcacgaat ggaattaagc aaagttttca ttctatcaat agactctaaa accacatcca
     7981 tgatatctgg agttattttt aactcgccat gtcttgcttt gtttaaaaca tcttccatgt
     8041 ggtgagttaa cttcgttaaa acatcaaaat ttaagaaact tgatgatcct ttaaccgtat
     8101 gtgcaacacg gaaaattcta tttaataatt ctaaatcttc tggatttgat tcaagctcta
     8161 ctaaatcatg gtcgatttgc tcaacaagct caaaagcttc aaccaaaaag tcttcaagta
     8221 tttcttgcat atcttccata ttttacccct gttcttgaga ttgatgtttt ttgataacct
     8281 ttgcaatttc attgaagaaa tcgctagcgt taaatttgac aagatagcct tctccaccag
     8341 cttcttgaac acctttctca ttcataaatt catttgataa agacgagtta aagactatag
     8401 gaatatcttt aaatcttgga tcttctttaa tgcgtgcagc aaagtggaaa ccatccattt
     8461 gtggcatttc gacatcgctt actataattt ttaaagtatc atttaaactt tcaccataaa
     8521 cttggcttaa ttcttctaat ttgtttatgc cctctacgcc gtccttagct tcaacaactt
     8581 gaaagcccat ctgttgcatc atttctttga cgcgttttct agcagtcatg ctgtcatcaa
     8641 gtataagtgc tgttccagta aatttttcta tttttccaaa atctatatct gtttttggag
     8701 cgtaaattcc taaatcttca acaacacttt caagatctaa aattagcaac acttcatcat
     8761 tttcaatgcg tgttacacct gtgattttac ctttatctaa agcacctgat cctgtagaaa
     8821 aagttgctgg ttctatatct ttccagttta ttctacgaat tctttttgct tcgtgaacta
     8881 taaaaccaat aaggatattg ctaaattcag taataataac cctaggtttt aacatagtgc
     8941 tttctggctc agtgatttgc atccatttgg caagattgac tacaggtata accactccac
     9001 gaagatcaaa gataccttcg atgtaatcag gtacacctgg aagttctgta aggcttggga
     9061 tttttataat ctcccttacc ttagaaacat ttacaccata aattccttca tagactttat
     9121 cgtgtccttg cttaaagata cggaaatcga caagctccat ttcatttgaa cccgttttca
     9181 cgatattttc atcaaacatt ttgacccctc aatttctgtt ctcgaaattt gatttcttgc
     9241 tgatattcta ctacaaaaaa acttctctca tatgcaaaac tagctaagtt aagatattta
     9301 atgttttctt tgttgatttg atgattttga tgatagtgtc cttcacatac ccaaaatcct
     9361 aaattttcat atctttcata tctttttttc gc
//
LOCUS       DAZAND010000077         9302 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.077, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000077 DAZAND010000000
VERSION     DAZAND010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9302
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.077"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1140
                     /locus_tag="ACHDOB_001379"
     CDS             <1..1140
                     /locus_tag="ACHDOB_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030420 - establishment of competence for
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HFN3326300.1"
                     /translation="NQKHYFINNALLTHQYTKYNKKNKKYWVLKLQTENFTFYTTSFK
                     DLNLSKNQLLSLRIITHNINFKDYLSKSFYAPSYDFEKLKEKEYNPIISYFLNQHTNE
                     KIKEFYGALFFALPISLELRNDVNYYGIAHLIAISGYHIGLLFSLIFFILAPIYSFFQ
                     KIYFPYRNLRLDLSILIFTLLLAYACLIGFIPSFVRSLIMAFWVFYLLCKNIKIINFF
                     TLFCSILLCISLYPRLLFSIGFLFSILGVFYIFLYMHHFANKFNNLINIILLNIWTFF
                     AMVLPVLYFFPLISYQQILGIILSGIFVIFYPLVLFLHLINYGDLLNFILDEFFKFKI
                     YGTNIYIPFWIFISYLIASLISVRFKYLAFLCIFANFIPFIMIVI"
     gene            complement(1084..1890)
                     /locus_tag="ACHDOB_001380"
     CDS             complement(1084..1890)
                     /locus_tag="ACHDOB_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HFN3326301.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGAIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNYNHNEGNKIRKNTKKS"
     gene            complement(1894..3276)
                     /locus_tag="ACHDOB_001381"
     CDS             complement(1894..3276)
                     /locus_tag="ACHDOB_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HFN3326302.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLSSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVNPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVREAIDEDLRNLEHYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPALLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            complement(3279..4004)
                     /locus_tag="ACHDOB_001382"
     CDS             complement(3279..4004)
                     /locus_tag="ACHDOB_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HFN3326303.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDFR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPTSVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            4126..5286
                     /locus_tag="ACHDOB_001383"
     CDS             4126..5286
                     /locus_tag="ACHDOB_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HFN3326304.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            complement(5283..5486)
                     /locus_tag="ACHDOB_001384"
     CDS             complement(5283..5486)
                     /locus_tag="ACHDOB_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326305.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLNSLINAKDKALLSN"
     gene            complement(5488..6168)
                     /locus_tag="ACHDOB_001385"
     CDS             complement(5488..6168)
                     /locus_tag="ACHDOB_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HFN3326306.1"
                     /translation="MGRSRKNFLSLLENDKVVIFCAFDKDYNVFRAKVYSENLFYHLG
                     FKDIKKCVFMDQIHSHKVIIYEKNLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            complement(6132..6743)
                     /locus_tag="ACHDOB_001386"
     CDS             complement(6132..6743)
                     /locus_tag="ACHDOB_001386"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HFN3326307.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGACLSVT
                     KLYEGGFEVELSRESRTHIAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFYISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            complement(6752..9292)
                     /locus_tag="ACHDOB_001387"
     CDS             complement(6752..9292)
                     /locus_tag="ACHDOB_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326308.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLKGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFVGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTNYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDISKNALSTDFNLSIPSLVKLET
                     LTKTRLNGNLGVIGQTSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKLNTNELKKIAKIELPNTIFS
                     FDAKANAKNSNIAYNALLASNLLNIKKLQGSYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLAAKAHIIGTQIQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     AGMPNYASGIVNAKINLDNIDFNNLNGKANLEAKGILNATTLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGRLQSTLKDNLLLADLNGVDLSSLAQGLD
                     FMDVYQGKADVKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTA
                     NAKALIKKENIKLDLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
BASE COUNT         3262 a         1583 c         1121 g         3336 t
ORIGIN      
        1 aaccaaaaac attactttat aaataacgct ctattaacgc accaatatac aaaatataat
       61 aaaaaaaata aaaaatactg ggttttaaag ttacaaactg aaaacttcac tttttatact
      121 acaagtttta aggatttaaa tttaagcaag aatcaacttt taagccttag aattatcacc
      181 cataatatta actttaaaga ctatctgagc aaaagttttt atgcaccttc ttatgatttt
      241 gaaaaattaa aagaaaaaga atacaatccc attatatctt acttcttaaa tcaacataca
      301 aatgaaaaaa ttaaagaatt ttatggtgct ttattttttg cactgcccat atctttagag
      361 cttagaaacg atgtaaatta ctatggcata gcacacctta tagcaattag cggttatcac
      421 ataggcttgc tttttagttt aattttcttt attttagctc caatttatag ttttttccaa
      481 aaaatatatt ttccttatag aaatttacgt ttagatttaa gtattttaat ttttacacta
      541 cttttagctt atgcttgttt aataggattt atcccttctt ttgtgcgctc cttgattatg
      601 gctttttggg ttttttatct attgtgcaaa aatataaaaa ttattaattt ctttacgctt
      661 ttttgtagta ttttattgtg catttctctt taccctagac ttttatttag tattggattt
      721 ttattttcta ttttaggtgt tttttatatt tttttatata tgcatcattt tgcaaataaa
      781 tttaataatc ttataaatat tattttgctt aatatttgga ctttttttgc tatggtttta
      841 cctgtgcttt atttttttcc acttataagc taccaacaaa ttttaggtat tattttgagt
      901 ggaatttttg taatatttta tcctttagta ttatttttgc atcttataaa ctatggagat
      961 ttgctcaatt ttatcttaga tgaatttttt aaatttaaaa tttatggaac taatatctat
     1021 atcccatttt ggatttttat aagttatctt attgcttctt taatctctgt acgatttaaa
     1081 tatctagctt ttctttgtat ttttgcgaat tttattccct tcattatgat tgtaatttag
     1141 aaaataatag agtttaagcc caaaaagata aataatccaa gaaatataaa tccaaataaa
     1201 aaagaataaa atagtagaaa aagatccata aacactagcg tatgttttat tatataccac
     1261 ataatataca aataaatttt ttcctatata ccaaatagca cccgctccaa aagatactaa
     1321 agctaaactt ttaagagttc ccttatgaac agaacttgaa taagatataa aaaataaacc
     1381 ccaaataatt acaaagggta aaatttcaaa aaaattaaac cctattttat aatcatctaa
     1441 agtttgttgg ataaaacctg aaatataaaa actaagccca agccccaaag gaacaagagt
     1501 taaaagagtc caataagaac taatgctttg ccaaagtcct ttaggttcat ttttagtaat
     1561 acgattgatt acaaaatcat agcctgaaaa aaaagctaaa gaagtaaatg ccatagcaat
     1621 aagacctaca atacccaaat ttacactatt ttttaaaaaa gtatcgatgt aggtagcaac
     1681 aacatcttgt tgcgttggta ttaaaaaagc aaaaattact tgctttgctt tttcataata
     1741 agctttaaaa ctagaaattt gcgtaaaaac agaaaaacat acaaataaaa taggtattaa
     1801 agataataca gtataaaaac taagcgctgc tgcataattt aaaatttcct tatcacgcaa
     1861 atttagcaaa atagtaaaaa aatttttcac cttctaaagt cccattttaa aaggatttag
     1921 tatattattt ggatcaaaag cttttttaat atttctcatt aaattcattt cggcttcaga
     1981 aaaagctaaa ttcataaaag gtgctttaga gagtccgata ccatgctctc cgcttaaagt
     2041 tcctccaagt ttcactgtta atttaaaaat ttcttccaca gcttcatagc cttttttcac
     2101 ctgctcttta tcatttttat caggaaccat aacattagta tgcacatttc catcccctgt
     2161 atgtccaaaa caaggaattt taaaaccata ttttttagaa atctcatcta taccttcaag
     2221 caaagcaggt agtttagaac gcggaactgt aatatcttca ttaagtttta aagttccata
     2281 catggcaatg ctttgagaac aatttcttct agcaaaccaa atatctgcgg tttcttgttc
     2341 atcttttgct attttaaatt cactagctcc agcttctaaa aaataatgtt ctaaatttct
     2401 taaatcctca tcaatagcct ctctaacatt accatccaca tcagcaatca aaatagctcc
     2461 agcttctata ggcaaacctt tgttaaattt actctcaacc gctctaatgc taagattatc
     2521 taaaaattcc atagacacag gatttacgcc actagcaaga cttttataaa ccgcattcat
     2581 agcacttttt acacttggaa aaatagcaaa agcagttttt ttgaatttag gtaaaggtat
     2641 taattttaaa gtaagctcac ttaaaactgc caaagaacct tcactagcga ttaaaattcc
     2701 tgccaaatta taacctgcta catctttaat agtgcgtttt cctgcacgaa tgatttctcc
     2761 gctagacaaa acagccctta aagccatcac ataatctttt gtaatgccat attttgcagc
     2821 tctcattccc ccagcatttt cgcttacatt accccctaag ctagaatact ccatgctagc
     2881 agggtcaggc ggataaaaaa gtccgtattt agccacttct ttttgtaaat gtatattaat
     2941 aaccccaggt tgcacaacag ccactaaatt ttcaagatca atttccaaaa ttttattcat
     3001 atgcttttca aaagcaagca ccacaccgcc attaacagct aaagctcctc ctgtaaaacc
     3061 agatcctgag cctcgtggta tgactatgat attattttca ttgcaaaatt ttaaaatttg
     3121 agcaatatct tcttcatttc ttggaaaaag aaccccatcg ggtaaataat gtttttttgt
     3181 cgcatcatag ctataagctc ttttgtgaat ttcatcaaaa taagcgtttt cttctcctaa
     3241 aaatcgttta aaatattgtt caaattcttt tttcatgttt attgcacctt aggaagatta
     3301 atcaaagcat cataatatct ataataattc cctatttctt gagagttaaa atcaaaaaaa
     3361 ttacttttat atccacctat acgagaataa aaaggaacct gaacgctagt tggcttgctt
     3421 ataggcactt cataaagctt attaaaatct tgacaatcca caacttctgc ctgattttcc
     3481 aaagccacaa ccaaaatgcc aaccgcatta tcatcacaaa attgcctaaa atctgaacgc
     3541 ttaggagaaa gagtggccgt tctaattaat tgtgctccaa aaatgtcaat atgggtaaaa
     3601 tatatctgcg gaaattctct aacaagttca ttataagttt gttcatcagg agcaattacc
     3661 aatcctctat cataaagaaa atttaaaaca acctcatcac ctactttagg taaaacattt
     3721 ggtaaaggca aagcatcttg cttaagagct gaaaaaacac taaattctaa ttttgccaaa
     3781 ccattttttt tatctataac acttgctcta gcgatgatac tttgcgaatt gctaaaatgt
     3841 tgcactacta cgccacttga ataaagtttt atatcatcac tatctttaat ataaccataa
     3901 atatcatcaa cttttacaag ttcacttttt ataggtttta aatcaaatcc aaccgcaaag
     3961 aggctaaggt ttaaagctaa aaaacacact atagttttaa acaaatttgc tccttaaata
     4021 aaaatttata gaattataat ccttttttgt taagcaattg taagaaaaat aaagtaaaat
     4081 atagctttca aatttcaaaa ttcttttaaa aattaaggtt atctcatgaa aaaattattg
     4141 cttttattta tttttgttgt tcaaagtttt gcagctttaa gtgttgaaga gctaacttgg
     4201 gataatggag ataccttgct taaattctta caaagaaatt ccatacctat gtcgctttat
     4261 tatggacttg atagagaaga tcaagaactt gcttctgata tagcctataa aataaaatat
     4321 caagttttaa aagatgaaaa caacaacata gaacaagttt taattccaat tagtgatgat
     4381 ttacaaattc atatctataa agataaagat ggacaataca ctcttgcttt tactcctgta
     4441 tcttatcaaa aagaagatag aattttacat ttaaccatta aaagctctgc ttatcaagat
     4501 gtctatgaag aaagtggtag cagtacttta gctcgtgcta tggttcgtgc ttttcgagga
     4561 agtataaatt ttcgcaatat ccaaaaaggt gatgaagtaa ccctatatta tgaacaaaaa
     4621 agacgcatgg gtaaactttg gggcgatata aatataaaaa tggcaatggt agaaattaat
     4681 aaaagcgcta gagaagtctt ttcttataat gatatattct atgatcgcga tggcaaagaa
     4741 ttagaatctt ttttacttac aaaacctgtg aactacacta gaatttcctc tccttttaca
     4801 acagcaagat atcatcctat attaaaacgc tatcgcgccc atcttggtat agactatgct
     4861 gcacctactg gaactcctgt aaaaagtgct ggcaaaggag tagtaacctt tataggcaca
     4921 aaaggtggtt atggaaatgt aattcaaatc aagcatgact caggttatat gactttatat
     4981 gctcatctta gtcgttttgc aaaaattaaa aacggacaaa aggtaaatca aggacaagta
     5041 attgcatatg ttggttcaac aggtatgagc acaggtcctc atttgcattt tggagtatat
     5101 ttaaataata aagctataaa tcctgcatct gttgtaaaaa tcgccaaatc agaacttagt
     5161 ggaaaagcaa aagagaattt taaacatatc atagctggat acgagcaggt tgttaaagaa
     5221 gccctagcct cgaatcaacc taatcctcca aaagaagaag attttgaaaa ctatatagaa
     5281 ttttaattac tcaacaacgc tttatctttt gcattgatta aagaatttag aagagttgca
     5341 agctcttctt tttctttttc attaatttca caaaaatctg catcaatcaa ttgttttacc
     5401 aaagcttcat ttaacaaatc tccatcgcca aattctctag ctttttgaat gatttttaac
     5461 actcttaaat cttttctttc atacatttta atcctttaaa taaaccacac tcacaaaacg
     5521 cttaggcgtt ttatcacgac gataagaaaa aaaactctca tcatcaaaac tacaaattcc
     5581 acaatcttta atattttcaa tgcctaaatt ttgagcttga aattttacta aagcttttaa
     5641 atcaagttta tcatcttgaa caaattcttt aaattctttt ttagcaaatt ctaaaatttc
     5701 tccatctatt tcataatttt tagcacaaat tccaggcagg ataaaaagat gaaatttatt
     5761 cttatctaaa tgtgaatttt gcatagtaat ttgatcaacg cattctttta ggatattttc
     5821 aaagcttcct tttctacctg aatgcaaagc tgctataatg ccgctttcat gatataagat
     5881 caaaggcaga caatccgcac ttaaaacaca aagagcgata tttttttctt tacttataag
     5941 cccatcacag ctaagatttt ttaaattttt ttcataaatg ataactttat gagagtgaat
     6001 ttgatccata aaaacacatt ttttaatatc tttaaaacct aaatgataaa ataaattctc
     6061 actataaacc ttagctctaa aaacattata atccttatca aaagcacaaa aaataacgac
     6121 tttatcattt tctaataaag ataagaaatt ctttcgactt cttcccatga taatcctttg
     6181 tttttacctt gcaattgtgc ataaatataa cgagcaagta aatcactttc tatatttatt
     6241 tttctaccta cttgatagtc tttaaaaagc gtttctttaa aagtaatagg aataatagta
     6301 agcctaatac cattttttaa aatttcattg atagtaagac ttactccatc aacagctata
     6361 cttccttttt ctgccataaa tttcatagct tctttaggta aagatatata aaaatccact
     6421 ccattttcat ctttttgaat cttttcaagt gtgccgataa aatcaatatg tccttgcata
     6481 agatgcccat caattctatc gccatatctt aaagcaggtt ctatatgaac tttatctttt
     6541 aaattctcta tagctatatg agtgcgactt tcacgagaaa gctccacttc aaaaccccct
     6601 tcataaagtt ttgttacact taaacaagct ccatttacgg ctatgctatc gccaagattt
     6661 gggcgatatt ttgcttttaa gcttaaagta ttgttttgat aagattgaac tttagcaatt
     6721 tctcttatga gtccattaaa cattttttac cttaaaaaat cttatttaat aatttattca
     6781 ccgctttatc aactttatcg cccgtacttt tagcaccatc actcacaccg ccacctacta
     6841 catttttaat agaatttaac acacttcctg catttaaatt cactttagga ttttccgtag
     6901 ttcctgtaat acttccttta aaattggctc tatcgagttt aatatcaaaa ggcaaattta
     6961 aagctccgct tttagaattt aaagctcctg attgtactaa aatataagaa cgatctgctt
     7021 gcatattaag atcaagtttg atattttctt ttttaatcaa agctttagca ttagcagtgc
     7081 gataaacatc attggtaata tcttttagtg ttaaaatttt taaagcattg gtaataagat
     7141 ttggttttaa tttaccctct ttcatatcca aattaacctc tccttcttca cttaaaagat
     7201 tgtaatttgc cttcacatct gccttacctt gataaacatc cataaaatct aaaccttgag
     7261 ctagactact taaatccact ccatttaaat cagcaagcaa aaggttatct ttaagtgtgc
     7321 tttgaagcct cccttcaaat aaatttggac tatttacaac aaaatttaaa ctcttatcaa
     7381 aacctacctt tccattaaat tctgccttac ctttaagttt tctatccaac aaaaagccta
     7441 gttttgaaaa atcatttatc tttagattaa aatccgaatt taaaagcatt ttgcttatgt
     7501 caaaacttcc ttgtagcttt gtaagatcag ctaaagatga atttaaaaca gaatcaaatt
     7561 gagcgatatt gtttttaaaa ttaattttgg tatttaaatc ataacttgta ttgtttggaa
     7621 aatttttatt taaaatttta cttaaagttg tagcatttaa aataccttta gcttctaaat
     7681 ttgctttacc attaaggttg ttaaaatcga tattatctaa attaattttt gcattaacaa
     7741 tcccactggc ataatttggc atacctgcta taacaaaaag tttagataaa tcaagtttat
     7801 caatgtttaa atcaagtttt ttaccatttg aatcagcctt gattacacca tctgccaaat
     7861 ttgcatttgc atttaaattt tgtatttgag tgcctataat atgagctttt gcagcaagat
     7921 ctgccttgcc ttgtaatttt tgtcctgcta tagcactaaa ctgagataaa tcatcgataa
     7981 aagcatttaa atctgtattt aactcactat tttttaaatt ataacttcct tgaagttttt
     8041 tgatattaag caaatttgaa gcaagcaaag cattgtaagc aatattgcta ttttttgcat
     8101 ttgctttagc gtcaaaacta aaaattgtat ttggaagctc tattttagct atttttttaa
     8161 gctcattggt gttaagtttt gcattgttta tttttgcttc aagatcaaaa ttagaaaaat
     8221 ccaaatctgc atttagaagt ttagcattta aatttccaga aaccaaagct ccatatcctg
     8281 caagagctaa taatttttcc aaacttgctt cattaatatc tgcaaaaatt ttattatttt
     8341 tcaaacttgc ctttacctct ccaccaagtc cgataacttg agcatttaaa cttgataagg
     8401 cattatttac aacacttgtt tgacctatca cacccaaatt accatttagt ctagtttttg
     8461 taagtgtttc aagctttaca agagaaggaa tacttaaatt aaaatcagta cttaaagcat
     8521 tcttgctaat atcataaaga gttttttggg tttgtaagtt aagataatca ttgtaaattt
     8581 tacttacagc ataaatctta tcttctttaa cattggccaa aatttctgct ttaggattag
     8641 aatttaaagg caagtctaaa gaaaaatctt tttttatcgc ctcatagttt atataatttg
     8701 tatcaagttt tatgatgata ttcccatcag gttttaaatt ctgtgctgaa atttttgctt
     8761 gagcatttaa aaaaccttta gcgtaactag ggtaagataa aagatgaagt atttcttcta
     8821 tcttaagatt ttgcgcatct aaatttaaag caatagggct ataattatac attcttgcat
     8881 ttaaaagtac atttgaacct aacaaataac cctttccatc taaagtaaaa tcacttgctt
     8941 taccttgaat cttaccgaca aaagaaaggt tttgatttaa atttaaacct aaatttttag
     9001 cataattttg atttaaagaa ataagatagt caagatcaaa tccaagctta aaaggactca
     9061 aagctccctt aagattaaaa tctgccatat ttgcgatatt tgcttgcaat tcaagacttg
     9121 aaaaacgtaa attaaaatgc gtgatattta catctaatcc cgcactttct ttgatctttt
     9181 tttgcgctat atttgccact atattattac caaaacttgt gaaaagtatg gtataaatag
     9241 caattaaaag cacaacaaca aaagctataa ctccataaaa aatctttttc atttttatcc
     9301 tt
//
LOCUS       DAZAND010000078         9218 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.078, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000078 DAZAND010000000
VERSION     DAZAND010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9218
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.078"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(56..583)
                     /gene="tpx"
                     /locus_tag="ACHDOB_001388"
     CDS             complement(56..583)
                     /gene="tpx"
                     /locus_tag="ACHDOB_001388"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0016684 - oxidoreductase activity, acting
                     on peroxide as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HFN3326309.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLVNEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(681..1421)
                     /gene="peb2"
                     /locus_tag="ACHDOB_001389"
     CDS             complement(681..1421)
                     /gene="peb2"
                     /locus_tag="ACHDOB_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HFN3326310.1"
                     /translation="MKKILILSLVAASFLNAEILVYGPGGPAPVLKELALKFEEKTKE
                     KVIVTAGPTPAWIDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIV
                     RPNNPKNIKNFEDILKDGVNVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAK
                     NSKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLEN
                     KKALEFVDFIKSKEAQKVWKKYTWKEVK"
     gene            complement(1470..3500)
                     /locus_tag="ACHDOB_001390"
     CDS             complement(1470..3500)
                     /locus_tag="ACHDOB_001390"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HFN3326311.1"
                     /translation="MPLSELNNEQYLAATADFGRNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKELLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKGENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
     gene            3629..4648
                     /locus_tag="ACHDOB_001391"
     CDS             3629..4648
                     /locus_tag="ACHDOB_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326312.1"
                     /translation="MNLKIFSIIVSILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSDININNNTIQKQETNLLDENQSLNNDTFNTSISE
                     NNQSLNNDTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERER
                     AVKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRINL
                     LKDMLSVIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSPY
                     LNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEIIE
                     ISSIK"
     gene            4671..7283
                     /gene="valS"
                     /locus_tag="ACHDOB_001392"
     CDS             4671..7283
                     /gene="valS"
                     /locus_tag="ACHDOB_001392"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HFN3326313.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREKFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYTKFVGKEVILPISKKAIKIIADEHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFNEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEH
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSENDLEDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVGIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIMMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            7288..8298
                     /locus_tag="ACHDOB_001393"
     CDS             7288..8298
                     /locus_tag="ACHDOB_001393"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HFN3326314.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRVLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            8295..9206
                     /locus_tag="ACHDOB_001394"
     CDS             8295..9206
                     /locus_tag="ACHDOB_001394"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease"
                     /protein_id="HFN3326315.1"
                     /translation="MNEENISIISAFFSRISQFFNEFSWQDIKEVSLSSITSFSENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGISIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFEK"
BASE COUNT         3389 a         1438 c         1350 g         3041 t
ORIGIN      
        1 ataataaaaa aatgaagatg taaaaattaa gccctaagaa tgggcttaat caaaattaat
       61 ggcaaccaca accaccgcag cagctagaac caccaaaaaa tgcatcaagt tttgcaatat
      121 ctggcatttc tgtgatttca tttacaagtt ctttatatgc cactttaccc tctttaatca
      181 caaatacggc acgagctaaa agcccttcta aagcaccttc atttaccaaa acaccatatt
      241 tttcaccaaa ttcttttgcc acaaaatcac ttgcaacact taaattttca ataccttctg
      301 tactgcaaaa tcttcccata gcaaaaggta agtccatact tactacaatc acttcagcac
      361 cattgtaact ggctactttt ttattaaatt ctctagcttc tgtagcacaa actggtgtat
      421 ctaagcttgg aacacttaaa atgatttgag ttttacccgc tgcaccgatt tcaatcacgc
      481 ttaaatcttt agctttaaga tttaccttag gagcatctgc tccaacttct actgaatttc
      541 ctttaagttt tacaggattt cctttaaaat ttactgtact catttaattt ccttttttga
      601 tattttaaac attattgcaa ttaatgtttt aggagtgatt atatcctata aatattaatt
      661 atttttaatt tcactgaaaa ttattttact tctttccaag tatatttttt ccacactttt
      721 tgagcttctt tactcttaat aaaatcgaca aattctaaag cttttttatt ttctaaacct
      781 ttttttgtag gagctatttc agctgcacga taaatcactg catttttatc tttgataaat
      841 aaagctttat catcgcctaa agcctttgcc caatgagacc aaatgattaa agcatcaata
      901 tttggattgt tattccactc atctacagca gctttggaat ttttagcata aatttttata
      961 tttttacgta attttaccaa attttctctt tttgcacttt ttaaagccat atcttcataa
     1021 agtccaactt gtcctgcacc atcaaccacc ataacattta cgccatcttt taaaatatct
     1081 tcaaaatttt taatattttt tggattattt ggacgcacga taatacctga tggacgcaca
     1141 tttaaaacgc ttaaattttc caaacttaaa cttggaattt ttttagcaaa atcatccatc
     1201 attgaagtat tgcctgaaaa aatcaaatct gcattttctt ttgctttatc tatccaagct
     1261 ggagttggac ctgcggttac aatcaccttt tcttttgttt tttcctcaaa ttttaaagca
     1321 agctctttta gcacaggagc aggaccacct ggaccataaa ctaaaatttc agcatttaaa
     1381 aaacttgctg ctactaaact taaaattaat atttttttca taaaataaac ctttctttaa
     1441 taatataact tacttgaaag gaaattttat caatctatag ttaactctcc cttgcaaagc
     1501 cctgcttcta taagaaaacg agaaggagca aaagaagttt ttttgttttt atcatattta
     1561 gcatagctta aataaagtat attttttgcc ctagttaccg caacataaaa aagtcttctt
     1621 tcttcttcta agcttccacc cattcccata agcttttgat taggaaagcg accttgtgca
     1681 agatcaatca caaaaacaag atcaaattcc aagcctttac tcgcatgcac gctaagcaaa
     1741 ttaactcctt tgccgctact catttcgctt gcacctaaag ttagaaaatt ataatacttg
     1801 taaatatcgc tataattttt tgtaagctct tttaaaacat tgaattttgt ttctattttt
     1861 tctaaatttt caccctttct taataaatcc acctgccctg ctttatttgt cgctcttttg
     1921 gttgcaagtt cttcgcaaat ttctctataa aaagaatttt cacaaattaa attgactaaa
     1981 gtcaaagaat gttttatttc catagctttt tttaaaaaaa gatagatttt ttccaaattt
     2041 ctagcgcaca aatcattgat ttttgaaagt cttaaaatag gatgtgcatc aaattcactc
     2101 tcaaatttaa aacgagtttc gctggctaat tcttccaaat ctgcaaaaag cccaagttga
     2161 taatttcttt tttgatgatt ttgcaaattt acatttttat caggatctaa aaaacctttt
     2221 attaaatttc catgccctaa ttttaaaagt gcgtcaaaaa tttcttttgc taaaactcca
     2281 cccacacctt tggtgtattg aaccaaatga ataaaagcca taatatcctt aggatttacc
     2341 acaagagcaa gcatagagct aaaagcttta acttctaaac tttcaaaaaa acttccactt
     2401 ccctttctca cacttgcaat gccctgctcc cttaaagcta cttcaacccc atcagcactt
     2461 gagttgttgc gaaaaatcac ggcaatttct tccaaactta ctccgcttgt aagtatcatt
     2521 ttggctatat tttgatactg atcaaataat tcttcaaaag taagcaaaga tggggcttta
     2581 aactcatcat ttcttgtaac aataagttct tttggatata atctttcgtt atttaaaatc
     2641 actttattag ccaaagctaa aatacttctt gatgaacggt agtttttatt taaagaaaaa
     2701 atttttgcat ctttaaaacg atctttaaac ccacctatga tattaatatc cgctccatta
     2761 aaagcataaa tactttgatc ataatcccct acacaaaaca aacttttact atgaaaagcc
     2821 tctattaagg aactttgcaa agtgtttgtg tcttgatatt catctactaa aatttcatca
     2881 aattcatatt tttcttcttt taaaagctct tttagattga taagtaagtc attaaaatct
     2941 acataattaa aacgcttttt ttcattatca tattctttta aaatatcttc ataaatttca
     3001 gcataaatac tttgatcttc gtagttttga caaaaccaag tataaaaatc ttgattgtgt
     3061 gctttgtttt gaaacaaaga ataaagatca tataaataac ttgattgata aggttttata
     3121 tcacttaaat gcctaaaagt tcttttttca tagacacttt taagtagagt ttttaactcg
     3181 cttgcttgct ttaaggctat atttttatcc gcatttctaa gtaaggtata agccgtacta
     3241 tgaaaagttc ctgcaagtat tttactggta atatttttat caaaaaattt ccctaaacgc
     3301 cctatcattt ctttactagc tttatttgtg aaagtcaaaa gcataatttt ttgaggtgcc
     3361 actcccttgc ttaaaagata agaaattctt gcaacaatag tagaagtttt tcccgtccct
     3421 gcacttgcaa taacaagatt gcgtccaaaa tcagcagtag cggcaagata ttgttcatta
     3481 tttaattctg aaagtggcat tattttcctt ataaaagtta aaattataaa aaaaaattac
     3541 ttaaaaatat aaaaatttaa aattacttta tattagatta tagtacaatg ctaaaattat
     3601 ttaactttct gtttttaagg gatagcaaat gaatttgaaa attttttcta ttattgttag
     3661 catattaatt gctgttattg tgatattagg tggaacatat tattatcttt ttgaatattc
     3721 aaaaccaaag aattacacct taaataccaa cacttacacc gaacaaaaat cgtataccaa
     3781 taactacgat aattcctatt caccttcgat ccaaaccaac aatagttcat cagatataaa
     3841 tattaataac aataccatcc aaaagcaaga aacaaaccta ttagatgaaa atcaaagctt
     3901 aaataacgat acatttaata catcaataag cgaaaacaat caaagcttaa ataatgacac
     3961 caatacaagt aataatatta atacaaatga aaataagcaa attttagata cggataaaga
     4021 aaaattaaaa caagaaaata aacaagccaa aatagaagct cttaaaaaag aaatcagcaa
     4081 acaacaaaag atcttagaaa gagaaagagc tgtaaaaaaa gaacttcaat caaacaaatc
     4141 aaacaaaaat aaatatctaa ataccgctag agaatatcta agcataggaa aaaacagtcg
     4201 tttagaacct gagcttagca cagaaaatat gaaagtttac attttagatg gaaaattttt
     4261 aagccaatac agaatcaatc tgttaaaaga tatgctaagc gttatacaag ataatgcaaa
     4321 agattattat ctaagtattt ttgttaaaat gctaccaaaa ggggaaatga aattaactat
     4381 ctataacaaa gaaattatct tttcagatat gaaaaaagct tataaatata ttagtttaga
     4441 tagattaagc ccatatttaa acaatccaaa agaattaaat gaacatgtag cacgtgaaga
     4501 aattttagaa agacttaaac ttcaaattaa aaaagacggc aaaggaagtg atttttctaa
     4561 acatatcaaa agtttgaaaa ctggacttaa tacagcacaa tatttcttcc cgttttgtga
     4621 aattatagaa attagctcta ttaaataagc taaaacaata aaggcaaata atgtatgata
     4681 aaaatttaga aaaagagtat tatcaaattt gcgaagaacg cggatatttt gaaatcgatg
     4741 gcaataaaac catacaagaa aaagataaaa atttctgcat tatgatgcct cctcctaatg
     4801 tcactggagt tttacacata ggacatgctt taaccttcac tctacaagac attatgacgc
     4861 gttataaaag aatggacggt tataaggttc tttatcaacc aggacttgat cacgcaggta
     4921 ttgccactca aaatgttgta gaaaaacaac tccttgctca aggcattaaa aaagaagaac
     4981 taggtagaga aaaatttata gaaaaagtat gggagtggaa agagcaaagc ggtggaaaaa
     5041 ttttagacca aatgagaaca ctaggcatca ctcctgcatg gagtcgcttg cgttttacta
     5101 tggatgaagg tttggttaat gccgtaaaaa aagcctttgt agaactttat gataaaagac
     5161 ttattgtacg cggaaactat atgatcaatt ggtgtactca cgatggcgct ttaagtgata
     5221 tagaagttga atacaaagaa aacaaaggaa aactttatca tattaaatac tttttaaaag
     5281 atagcgatga atttttagta gtagccacaa cgcgtcctga aacttttttt ggcgatactg
     5341 cagttatggt acatcctgat gatgaacgct atactaaatt tgtgggtaaa gaagtgattt
     5401 tgcctataag caaaaaagcc attaaaatca tagccgatga acatgtagaa aaagaatttg
     5461 gaacaggagt tgtaaaagtt actcccgctc atgacatgaa cgattatgaa gtaggactta
     5521 gacataattt agattttata agtgttttta atgaaaaagg aattttaaac gagcattgtt
     5581 tagagtttca aggtttagaa cgcttagaag caagagaaaa aatcgtagcc aaacttgaaa
     5641 gtcttggctt tatagaaaaa atagaagagc ataacaatca aataggatat tgttatcgtt
     5701 gcaacaatat agttgaacct tatatctcca agcaatggtt tgtaaaaaaa gaaatcgccc
     5761 aagaaagtat agaaaaagtt gcacttggcg aaagtaaatt ttacccaaat cactggataa
     5821 atagctttaa tgcttggatg aaagatttaa gagattggtg tatttcaaga caactttggt
     5881 gggggcatca aattcctgtg tattattgcg aatgctctca tgaatgggca agccaacata
     5941 cgcctaaaac ttgtccaaaa tgtcaaagtc aaaatttcaa acaagatgaa gatgtacttg
     6001 atacttggtt ttcttcagga ctttgggcta tgagtactct aggctgggga aatgaaaatt
     6061 ggggcaaaga taaaatttgg tctgaaaatg atttagaaga tttttatccc aattctttac
     6121 tcattacagg ttttgatatt ttatttttct gggtggctag aatgatgttt caaagcacta
     6181 atgctttaca tcaactgcct tttaaagata tttatttaca tgctcttgtg aaagatgagc
     6241 aaggtagaaa aatgagtaaa agtcttggaa atgtcatcga tccaaatgaa agtattaaag
     6301 aatatagtgc tgatatttta cgctttactt tagcacttct tgctatacaa ggacgagata
     6361 ttaaacttag caatgataaa cttttacaag ttagaaattt tacaaataaa atttataatg
     6421 ctacaaatta tctgctttta aatgaaagta aatttgaaga tttggaaaat atcacacttc
     6481 attcagaatt agcaaaatat atctatgcca aatttcaaac ttgtgttaag gatgtaagag
     6541 aaaatttaga caattatcgc tttaatgatg cagctaatac tctatataaa ttcttttggg
     6601 atgatttttg cgattggggt atagagctta gcaaagccga aaaatcaagc gttaaagaac
     6661 ttggtagtat tttcaaagaa gctttaaaac ttttaaatcc tttcatgcct tttatcagcg
     6721 agtatttata ccacaaacta agcgatacag aacttaaaac aagcccttct attatgataa
     6781 gcaaatatcc aaaatttaaa gaacaagata aaaatataga aaaaatcttt tctttgctca
     6841 tagaaagcat agttggtatc cgccgtgcta aaagtttaat cgatcttgga aattctaaaa
     6901 tagaaaaagc ttatatcaaa tttaacgata aaaaaatcaa agatgaaatc aaagcttata
     6961 tgaattttat catgatgctc gcaaagtgcg agcaaataga atttagtgaa gaaaaattac
     7021 caaaggcaat atgtgatgtt agcgagaatt tagaaatttt tattacgctt gaaaatgttg
     7081 atttaagtgg tattttaaca agacttgaaa atcaaaaaaa taagcttgaa aaagaaagtt
     7141 tcaagcttaa ctccatgctt tcaaatgaaa aattcatcgc taacgcacct aaagaggtgg
     7201 ttgagcaaaa taaagaagct ctagaaaatt taaaaattca acttgaaaaa atatcagttg
     7261 aacttcaaaa tctaagaggt taaaaatttg ataaaaataa aaaatttaaa aaaatattat
     7321 ggcaaggaac tcgtgataaa cgatgtttct ttggagatta aaaagggtga aatttacgcc
     7381 atagtaggtc atagtggagc tggaaaatcc actcttttaa gatgtattaa tggacttgag
     7441 aattatcaag aaggaagttt aaaagtcttt gatcaagaaa ttaaagattt aagtcaaaaa
     7501 aaatcaaaag agctaagagt gcttagaaaa gatataggga tgatctttca aaattttgcc
     7561 ctaatggaac gcaaaaatgt atttgaaaat gttgctatgc ctttaagaac acactatact
     7621 cagtgtaaat ttcatgccaa gctttttaat aaagaataca tgagcgaaaa agaaattgcc
     7681 caaaaagtca attccttact tgaaatcgta gggcttgatc ataaaaataa atcctatcca
     7741 agagaactga gcggggggca aaaacaacgc gttgctattg ctagagcctt agctttaaac
     7801 ccaaaaattt tacttagtga tgaagctact tcggctcttg atccaaacac tacaaaaaat
     7861 attttagagc ttatatctaa aatcaatgct gaatttggga ttactgttgt tttagtaact
     7921 cacgaaatgg atgtagtaaa agacatagct caaaaagctt tattacttga acatggacaa
     7981 atcataggaa gtggagcaat tgatgagctt tttttaaggc ctaatgccaa aatgaaagaa
     8041 tttttaggag aaagcgactt cttgcctgag cacggactta atatcaaact ttactttcca
     8101 aaagaagttg cccaaaatag tgtcatcact catatggcaa gaactctaaa tatagacttt
     8161 aacatagttt ggggtaaaat agaaaaactt aatggaaaag ccttgggaaa tttagttata
     8221 aatataaatg aaaaggataa agacaaggtt cttgattaca tagaaaaaag tggagtatta
     8281 tgggaggtgg catcatgaat gaagaaaaca tctctatcat cagtgctttt tttagtagaa
     8341 tttctcaatt ttttaatgaa ttttcttggc aggatattaa agaagtgagt ttaagttcta
     8401 ttacaagttt cagtgaaaat tatgaaaaca ttttaaaacc tgcgcttaat gaaacaattt
     8461 atatgagttt aatggctgta ctatttggat ttttattggc tatcattcct ggaattttac
     8521 ttgctatttg ggataaaaac ggaattaaag aaaataaaat cgcttatagc attttagatt
     8581 ttattacaaa tatactgcgt gcctttccat ttttaattct tatagttgtt cttttaccac
     8641 tttctaaaat catagtaggc acaagcatag gtacaaatgc tgccatagtt cctttagcta
     8701 tcggaatagc tccttatttg gcaaagatgc ttgaaagcgc ttttaaagaa atagacaaag
     8761 gaatcataga agcagcaaaa agttatggtg ctagcaatat tcaaattatc ttcaaggtta
     8821 tctttagtga ggcccttcct gctataatta gcggaattac tctaactttg atctttacca
     8881 ttggtttttc tgctcttgct ggaactgtcg gtggtggagg tttgggagat gtcgctattc
     8941 gctatggtta tgaaagattt aacaaagaag ttatgattca aactgtagtt attttactta
     9001 tattagttca gttagttcaa attctaggta atttatttta tacttgggct aaaaatagta
     9061 aaactacata tattattgcc actctattga ttttacttgg aattagcata gttatcaata
     9121 taaacaatga tgaaaatttc ttttggcaag taattgtttt tatcttattt ttgggaagtt
     9181 tgctttataa aggtttcgaa aaataaggag attatatc
//
LOCUS       DAZAND010000079         9020 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.079, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000079 DAZAND010000000
VERSION     DAZAND010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9020)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9020)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9020
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.079"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..324
                     /locus_tag="ACHDOB_001395"
     CDS             <1..324
                     /locus_tag="ACHDOB_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HFN3326316.1"
                     /translation="FIFDRNAQISRLFDDISHRLLEASGFIAFLIIFLMLLSSFEIFK
                     KLSKIRKLGYLCLVLASYHYFLTPKVPMFWEWSALIVALFYFIVRYTKTLKKLKSNNL
                     TFIKT"
     gene            complement(289..2001)
                     /locus_tag="ACHDOB_001396"
     CDS             complement(289..2001)
                     /locus_tag="ACHDOB_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN3326317.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFVRIQLYERLSFIQKSAYNS
                     EIKNQIKLYEKHIKERLKKSKFYNVLADIFKEYNLEHKEQIIFLALLKEEYALSNESS
                     ISREMNSLLSLISENDLERHKNKKLLQENAPLLNLIEYDEYLNAFGDISKSFFIIDEI
                     LQRIINFEPKQSKKIKIESVLKDQDIFELIEPSTDINDIIMPENTKELLENILKQQDK
                     KVLERLHSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKW
                     VGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIF
                     LEQIERFSGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFE
                     KDFDINILSNYELSGAQILMVVKNTALKVAVSQDGVFKMQDFIESIQKELNSSFDKSK
                     IVGF"
     gene            complement(2001..2825)
                     /locus_tag="ACHDOB_001397"
     CDS             complement(2001..2825)
                     /locus_tag="ACHDOB_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326318.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIVDDINGNLEIPLVKTNDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKGVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
     gene            complement(2836..3312)
                     /locus_tag="ACHDOB_001398"
     CDS             complement(2836..3312)
                     /locus_tag="ACHDOB_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326319.1"
                     /translation="MKHCLALCFIFFLCACSVKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKKVFNQKFFKNVYYDDILSDIL
                     KANALWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(3321..3812)
                     /locus_tag="ACHDOB_001399"
     CDS             complement(3321..3812)
                     /locus_tag="ACHDOB_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HFN3326320.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(3802..4737)
                     /locus_tag="ACHDOB_001400"
     CDS             complement(3802..4737)
                     /locus_tag="ACHDOB_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HFN3326321.1"
                     /translation="MKIVCLDAATLGDYDLSIFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGINNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQIPYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGSIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKHLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(4740..5909)
                     /locus_tag="ACHDOB_001401"
     CDS             complement(4740..5909)
                     /locus_tag="ACHDOB_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HFN3326322.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVIDNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLSHIANEAGFQTNFSFVDEVEFS
                     EEGVFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKVIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(5919..6524)
                     /locus_tag="ACHDOB_001402"
     CDS             complement(5919..6524)
                     /locus_tag="ACHDOB_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HFN3326323.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSTSSAKKSGFFGGGSKAASSSSSFGS"
     gene            complement(6647..6859)
                     /gene="rpsU"
                     /locus_tag="ACHDOB_001403"
     CDS             complement(6647..6859)
                     /gene="rpsU"
                     /locus_tag="ACHDOB_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HFN3326324.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            7019..8395
                     /gene="ccoG"
                     /locus_tag="ACHDOB_001404"
     CDS             7019..8395
                     /gene="ccoG"
                     /locus_tag="ACHDOB_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HFN3326325.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFALPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYGGQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            8382..9014
                     /gene="cmeR"
                     /locus_tag="ACHDOB_001405"
     CDS             8382..9014
                     /gene="cmeR"
                     /locus_tag="ACHDOB_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HFN3326326.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINGSKA"
BASE COUNT         3101 a         1497 c         1045 g         3377 t
ORIGIN      
        1 tttatttttg atagaaatgc tcaaatttca aggcttttcg atgatatttc acatcgttta
       61 ttagaagcaa gtggatttat cgcattttta atcatatttt taatgctttt aagttctttt
      121 gaaatcttta aaaaacttag taaaatcaga aaactaggat atttatgctt agttttggca
      181 agttatcatt attttttaac cccaaaagtt cctatgtttt gggaatggag tgctttaatt
      241 gtagctttgt tttattttat agttcgctat acaaaaacat taaaaaagtt aaaatccaac
      301 aatcttactt ttatcaaaac ttgaatttaa ttctttttgt atgctttcta taaaatcttg
      361 cattttaaaa accccatctt gtgatacagc tactttcaaa gctgtattct ttactaccat
      421 taaaatttgt gctccactta attcataatt tgataaaata tttatatcaa aatctttttc
      481 aaataatgct tttttaggta gaaatttttc ccaaatttta agcctatctt taaaatcagg
      541 ttttttaaat tctatcttat aatcaaatct tcttgaaaat gcactatcta agctttctaa
      601 aaaatttgtc gtagcgataa tcacaccact aaaacgctca atttgctcta agaatatatt
      661 ttgcatttga ttatgcattt tatcactacc actacttcca tctacacgcg tacttaaaaa
      721 ctgatcagct tcattgagaa gtaaaatagg actttgttta caagtttgca cgatattttt
      781 ataagtatca aaaatttttc ttacattttg ctcactctct ccaacccatt tgctcaaaat
      841 tttagaacag tcaaaactaa gaacagattt tttcattgat ttagccatag ctaaagctga
      901 catagttttt ccagtaccag caggaccata aaaaataatt ttagcttcta tatttttatt
      961 actctttata ccccaagaat gaagtctttc taggactttt ttatcttgtt gttttaaaat
     1021 attttctaaa agctcttttg tattttcagg cataataata tcattgatgt cagtgcttgg
     1081 ttctataagc tcgaaaatat cttgatcttt taaaacactt tcaattttga tttttttact
     1141 ttgttttggt tcaaaattta taattctttg taaaatttca tcgataataa aaaaactttt
     1201 agaaatatct ccaaaagcat ttaaatattc atcatactcg attaagttta aaagaggagc
     1261 attttcttgt aatagttttt tatttttatg cctttctaaa tcattttcac tgattaaaga
     1321 aagtaaagaa ttcatttctc tagaaatcga actttcatta cttaaggcgt attcttcttt
     1381 taaaagtgct agaaaaataa tttgttcttt atgttcaaga ttgtattctt taaaaatatc
     1441 agccaataca ttataaaatt tacttttttt tagtctttct ttgatatgtt tttcataaag
     1501 tttaatttga ttttttattt cactattata agcacttttt tgtataaaac ttaatctttc
     1561 gtataattga atacgcacaa attcatcttt taaatattct aaataatctg cataagcctc
     1621 ttgtttctca aagtttaaac gaggttttgc ttctaaaaat tctaaaaaat attcacttag
     1681 actaagctca ctttgcaata aggcaagagt taatgtttga gttttattat tttctaaact
     1741 tttaaaaaaa ctcgaatttt gatttacaaa acctctttcg ataagttttt ttaaatcctc
     1801 caaagcatca agataaagat acttatcatt tccaaaaatt gtcgataata aagtaaaggc
     1861 attgatagaa gaaatagaaa cgacataatt tctacaaagc tctctaagaa tcaaagcttc
     1921 atttttagca cacttaagct ctttataaat ttgagtatct tctatatttt tcaaacttaa
     1981 aaaatttttt aatttttcca ttatttttta aattccttaa gctcatcttc attaaattct
     2041 acgcaaatat tttcatctaa aaaatgacct tcaaaaggta gataacaaat ttttagtttt
     2101 ccattattaa gcaaaaaatt attattaaat tgtaaatttt gcagatcttc aaaacactca
     2161 tcacatgtat ttttaagctt ctcatgtaaa agattttgaa atttttgatt ttcagtatta
     2221 tacaaatcat ttagttttac aaatgcgtga gcattaatat cataaacaaa attatttaac
     2281 tctaaaatag cacgactcat accatcttca taaaaataat accattcttc aaaactaatt
     2341 tttccatctt gtaaaaaaat aggtttttgg cgaatttgct caaagctaaa tacaccctta
     2401 tgaacaggat gaaattcttt aaaatcatca ttaaaaccta taaaatcaag actacgcttt
     2461 atacgaatgc catcttgcgt ttcgacaagt tctaaagtag ttgttcctaa attttctcct
     2521 tgaaaatttt tattatcata cgtaagcatt ttagaagaat tgattttata ttttttacgc
     2581 tcatcctgcc aaaaatcatt tgtcttaacg agcggaatct ctaaatttcc atttatatca
     2641 tcaacaatta aaaaactaga acttgtttga tttttatccc tgtcaaaaag tggggtcata
     2701 ggtgcattat cataaactat ggcaaaaatt tctttatcct gcaaatgata aaaatacaat
     2761 tcacctttat aaacttgcgc taaagctaga tttacaaagc aaaataccag taaaaaaaat
     2821 ttcaaactct atccttcaat tttgaatatg cgttaagata attttagtat gtgaaatttt
     2881 atcaaaaaaa cttactttat tatcacaaac ttgataaaaa atttcataat tttttgcttt
     2941 taaattttgc tcaaaaccac aatcagtttt ttctaaattt ttaccctgcc ataaagcatt
     3001 tgcctttaaa atatcactta aaatatcatc ataatataca tttttaaaaa atttttgatt
     3061 aaacactttt ttatcataac acactgcatt gatacaaatt ttatctttga ttttgagttc
     3121 aaaaaaagct tgccctagtt tataaacttc caaatttaaa gcattatttt ctttttttaa
     3181 aaaagctgcg tcattgattt ttatcatagg agaagcaatc aaaaccatca agctttgact
     3241 tgaaaaattt tgatttttca cactacaagc acaaagaaaa aaaataaaac acagagctaa
     3301 acaatgcttc aaatttgacc ttatttaaga tttttaaaac tgatatttaa ctctaaatca
     3361 agctctttta caagcttcat tacagcttgt aaatcatcaa tttgttttgc tacaacacga
     3421 atttcttcac cacgaatcga agaattaact ttaagtttgc tatctttgat agctttattg
     3481 atttttttgg cattttcact atcaatagca tcgtttgctt tcaaatttaa acgaaacatt
     3541 gctccacttt cacgagaaag ctctttaata gcattaggat taattcctct tttgataagt
     3601 ttagaaatca ctatatcttt taaaacatca agctttcctt cactagaaga actgagttta
     3661 aaaatactct ctttttcgct taaatcaatc tcacacttaa ttccttttaa gtcataacga
     3721 ctatcaagtt cttttttagc ttgttcaaaa gcatttttta actcttgttt atccaaagct
     3781 gctgaaatat caaaactatg ttcacttgcc attttctatc cattctttta aattattata
     3841 aactatatcc attaaagcat ttaaagcctc cttgctcgcc cacgcaacat gaggagtgat
     3901 aataagattt tctttatttt taatgcttaa aagtggatga tttttcatca taggttcaat
     3961 ttctaaaaca tcaagcccta cacgaatatt tttttcatct atgattttag ctaaatcatt
     4021 ttcattgaca atcccacctc ttcctacatt aatcaaaatc gcattatctt ttaaatgctt
     4081 taattcttca aaggcgagta aatttttggt tttttcattt aaaggtgcgt ggatacttat
     4141 aatatcgcaa gtttttaata aatcttttaa ttccaaatgt acaaaatctg cgtttttatt
     4201 agctccactc gtagaataat aataaatttc ggctccaaaa gcctttgaaa tttttgccac
     4261 ttctttacct atgcttccta aacctataat accatgtttt ttaccactta aggtgtttaa
     4321 aattctacta taatctgtaa aaataggact ttcacaccat ttaccctctt tgctccattt
     4381 gtcataataa ggtatttgat ttaaaaaagc aaacataaac gcaaaagtat gttgcaccac
     4441 actcatagta gaatacccag cagcattttt tacaataata cctttttctt tagcatactc
     4501 aatatcgata ttattaatcc ctgttgcagt ttctaaaatg agttttaaat ttttacaagc
     4561 atcaatcaca tctttatcaa ttacaacctt gtttgtcatg gcgacattag catcttttaa
     4621 acgctctatg gtttgctctt tatttgttgt agtataaatt tgcaaagaac caaatttttc
     4681 aaaaatactt aaatcataat cccctaaagt tgccgcatct aaacaaacaa ttttcatttc
     4741 taatccttta taatatgtcc tacaaattta gaataattat caagcacaag tcctcctttt
     4801 ctaaatccta agccacaccc ttcataagca aagaaaacac ctgcttgata gtattcgttt
     4861 tcacatgaat taaactctac atattcttga taaataacct tattattccc ataaggacct
     4921 acattctcat gtaaagtttt tccatcttta attatactga tatttgcgcc ttctctacca
     4981 aaaacaggtt ttttaacata gtttttacct tccaaaggag tatcttttgt ttctaaaagt
     5041 aatggatgat ttggataaag ttcccataga atttttaaaa ttcccttaga ttgaaataaa
     5101 agcgtataag caggatttaa aataattgct ctttgattac gcataatttg agttaaaagc
     5161 atggcaagtt caccctcttc tatggctata tcttcccaag gaataagctt aaaccaatac
     5221 tcataatttt caccctcttt aaaaacaccc tcttcactaa attccacctc atctacaaag
     5281 gaaaaattag tttgaaaacc tgcttcattg gctatatgag aaagcaattt tgtagtgatt
     5341 tcttcttctt tacttcctgc aacacttgaa aaaagaattt tccatccttg ataatgctct
     5401 tcaaaccctt caacactttc atcaagggta ataagtcttt taaaattatc catcaaactt
     5461 tcataaatgc tgttaaattg tgcactttca tccattccat tttgttttaa aagcgcccat
     5521 tgtaaaatcg cactttcaaa aagagcagta ggggtatcag cattaaattc tataagtttt
     5581 ataggcttgc catcaagtcc acccgctaaa tcaaaacgcc catataaatg ccaatgcact
     5641 tcattttccc aactcatctt aatcgcatca ataagattaa aaggaattcc aagctcatca
     5701 aaacgatcat tatcaatcac ttcttgcgct gcagcaataa acatatcata aagttcattt
     5761 actgcttcat aataagcatt agcttcgctt tctttaacac aaactaactt attgctaata
     5821 taatcacttc catcttcatc tgtatgccaa gaaaaaccta tattttctaa ataatctttt
     5881 tgaagtttat ctacttgtag taattgcatt atttatcctt aagagccaaa agaggaacta
     5941 gaacttgcag ctttagagcc tccaccaaaa aaacctgatt ttttagcact tgaagtagaa
     6001 cttgttgtgc ctgctttatt aaaactattg acacttcttt gataagcact ttgatttgaa
     6061 aaagcaccgc gttgttgatt agcaaaattt tgattattga aaagttttga acctatccaa
     6121 cttcccaaaa tagcacctgc agcacttgcg agtaaagttt ctcctaaact caatccccca
     6181 ctactgattt gcccattatc tttagttaaa tttgaagttc cattgtcaat tttagctgct
     6241 tcttctttaa tcaaagcatc catttcttct ttggataaaa ttctttctgt accattaaga
     6301 tcttttaaaa ctacccttgt ttcatcactt ggatattgat ctttgatttt atactgccct
     6361 ggagctgttt cttcgataat tacaaaagct ccttgagcat tagctgcttg atttaaagta
     6421 tctgcattgt cattattact tccacaacct gctaaagcac ctccagcaac agctgctaaa
     6481 ccacctatca taccaatttg aatgattttt ttgatttttt tcatagagtt tatcctaaaa
     6541 acagaaaatt taaatttaga aattttaaca aaaaataata aatacttttt aatttaatac
     6601 caaatgaagt tcgtagatat aaaaaaagcc ctttcgggct tttgggttag agtcttgact
     6661 cgtagcgtct aagcatataa agtcttttaa gcattttttt gcgtgctgaa attttttgtt
     6721 ttttgcgaat ttcagtcata ggctcgaaaa atcttcttgc tcttacttca gttacaacta
     6781 gatttctatc tacttgtttt ttgaatttac gatacgcttc atcaaaagac tcgttaggat
     6841 gcaccttgat tcctggcaca gtcctcacca cctttctgtg taaatttttg ttgtgaaata
     6901 taattataaa acacttctta ttaattctaa cttagaaagc atttaaaaat tgttttagtt
     6961 tttatcggtt ataatcctta attacaaagt gctaaaaaat tataattaag gtctaaaaat
     7021 gcaaggacac attacaaact atacaaaaaa acgatatttt gtatatttaa ttgcaagtat
     7081 tatcatattt gccctacctt tcataagaat taatgagaat catttttttc ttttaagttt
     7141 tgatcattct aaattaaacc tattttttat ttctttttca acacaagaat tttatctcat
     7201 gccttttgtt cttatatttc tttttttatt tatttttttt attacaactt taggtggaag
     7261 aatttggtgt gcttggagtt gtccacaaac gatttttaga gttatatata gagatatcat
     7321 acaaactaaa tttcttaaaa ttcgcaaaaa tatcaataac aaacaaaaag aatatggggg
     7381 gcaatatttt aaaaaatttc ttggagtaat aattttttat tttatatctt tagttgctgt
     7441 tagtaattta ctttggtact ttattcctcc tgaagatttt ttcaattata ttcaaaatcc
     7501 tggcgagcat ctacttttac ttggaatttt attttgtgct agcttacttt ttactttgga
     7561 tattacctat ttacaagaaa aattttgtgt ttatgtctgt ccttatgcaa gaatacaatc
     7621 tgtaatgttc gatcatgata caatgcaagt gatctacgat gaaaaacgcg ggggcttgat
     7681 ctatgatgga cacaccaaac ttcataaaaa accgcctgag ggagaatgca taggttgtga
     7741 agcctgtgtt agcatctgtc caactcatat tgacatacgc aaaggaatgc aacttgaatg
     7801 tattaattgt cttgaatgtg ccgatgcttg ctctaaggta caaagcaaat ttaatcgtcc
     7861 aagtttgatc aattggacaa gtgcaaaagc tattgaaacg cgttctaagg ttcattattt
     7921 aagatttaga acgatagcat attttatagt tcttttaatt gctttattgg ctttaatcat
     7981 catgggaagc aaaaaagaaa gcatgctttt aaatatcaat cgtagtagtg aattatataa
     8041 tatttcaaat gttaaaggtg aattagtcat ttcaaatgct tatacctttt tgtttcaaaa
     8101 tacagattct aaacctcatg aatattattt tacagcaaat ttagaaggaa taaatgatgg
     8161 aattgaaatc ataagaccaa acaaaccttt taaattaaaa gcaggagaac aagtcaaaaa
     8221 aatagttgtt atcagggcta caaaaaattt agcaaataat gataaaaaag atgtaatctt
     8281 tcctttacat ataaaagctt acgcaaagga taatgaaaaa atttcggttt ttagaaaaag
     8341 tatatttgta taccctaaaa gcactcttat aaaggataaa aatgaactca aatagaacac
     8401 catcacaaaa agttttagcc agacaagaaa aaatcaaagc agtggcctta gagctttttt
     8461 taacaaaagg ataccaagaa acaagtttga gtgatattat taaattatcc ggaggatctt
     8521 attctaatat ttatgatggt tttaaaagta aagaagggct attctttgaa attttagatg
     8581 acatatgtaa aaaacacttt catcttattt attccaaaac acaagaaatt gaaaatggca
     8641 ctttaaaaga aattttaact tcttttggtt tagcttttat agaaattttc aatcaaccag
     8701 aagctgtagc ttttggtaaa attatctatt ctcaagttta tgacaaagat agacatcttg
     8761 ccaattggat agaaaataat caacaaaatt tttcctataa catacttatg gattttttca
     8821 agcaacaaaa taattcttat atgaaaaaaa atgcagaaaa acttgctgtt cttttttgta
     8881 ctatgttaaa agaaccttat catcatctta atgttttaat taatgctcct ttgaaaaata
     8941 aaaaagaaca aaaagaacat gttgaatttg ttgtaaacgt ttttctaaat gggatcaatg
     9001 gctccaaagc ttaaaaataa
//
LOCUS       DAZAND010000080         8656 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.080, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000080 DAZAND010000000
VERSION     DAZAND010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8656
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.080"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            104..877
                     /locus_tag="ACHDOB_001406"
     CDS             104..877
                     /locus_tag="ACHDOB_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFN3326327.1"
                     /translation="MKIKSLFIVSILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYVNILV
                     VRVGHENDPKIKALTQALQSDKIKQFIIEKYNGSVLPAF"
     gene            926..1696
                     /locus_tag="ACHDOB_001407"
     CDS             926..1696
                     /locus_tag="ACHDOB_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFN3326328.1"
                     /translation="MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     RSEDKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            1706..2482
                     /locus_tag="ACHDOB_001408"
     CDS             1706..2482
                     /locus_tag="ACHDOB_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFN3326329.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTNLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAVITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATIKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            2566..3228
                     /gene="flgA"
                     /locus_tag="ACHDOB_001409"
     CDS             2566..3228
                     /gene="flgA"
                     /locus_tag="ACHDOB_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HFN3326330.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERTIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGVLSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            3225..3788
                     /locus_tag="ACHDOB_001410"
     CDS             3225..3788
                     /locus_tag="ACHDOB_001410"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0106141 - flavin prenyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HFN3326331.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKAE
                     NEVNLEEICQENFKYTHFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIVGKWLDLLEIKHNLYEKWQNF"
     gene            3828..4304
                     /gene="coaD"
                     /locus_tag="ACHDOB_001411"
     CDS             3828..4304
                     /gene="coaD"
                     /locus_tag="ACHDOB_001411"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HFN3326332.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            4295..4873
                     /gene="tmk"
                     /locus_tag="ACHDOB_001412"
     CDS             4295..4873
                     /gene="tmk"
                     /locus_tag="ACHDOB_001412"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006233 - dTDP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HFN3326333.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPISKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISIEILTLDAKESKEKLHQQIKEFLQ"
     gene            4870..6096
                     /gene="hisS"
                     /locus_tag="ACHDOB_001413"
     CDS             4870..6096
                     /gene="hisS"
                     /locus_tag="ACHDOB_001413"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HFN3326334.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKTCEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESFGNASVYEDASIILMLVEIFSRLDIKFKLL
                     INSLGCLKCMPKYRENLIHFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQSLLNDAP
                     LLNQNLCSSCQKDFEILQSVLKENGVDFEVDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLDGKSGFGVGFAMGIERIIAILEQKEEKVQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEHKVLLSYEARKLAKHLENADKNNAEIFLCMGENEAQNESLFYKNLV
                     KKEEKMIKISDLKKVL"
     gene            6093..7928
                     /gene="speA"
                     /locus_tag="ACHDOB_001414"
     CDS             6093..7928
                     /gene="speA"
                     /locus_tag="ACHDOB_001414"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HFN3326335.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINHEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSI
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDALEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            7929..8567
                     /gene="cysE"
                     /locus_tag="ACHDOB_001415"
     CDS             7929..8567
                     /gene="cysE"
                     /locus_tag="ACHDOB_001415"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HFN3326336.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRVFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGAKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
BASE COUNT         3287 a         1231 c         1429 g         2709 t
ORIGIN      
        1 tgcgttaatc tgactatcaa caagttttta tatgcttctt cctgatagtc agagtgaatt
       61 tattaagatt aaagcaagca caaaatgact aaaaaggaaa aaaatgaaaa tcaaatcttt
      121 atttatagta agtattttaa cattaagtct taatgcaaat gcattagaaa ccatcacagt
      181 tgcagcaact cccgtccctc atgctgaaat cctagagcaa gtaaaacctg atttagaaaa
      241 acaaggctat aaacttgaaa tcaaagaatt tacagattat gttttaccta atctagctgt
      301 tgataacgga gaagccgatg caaatttttt ccaacatact ccttatttgg aagaatttaa
      361 taaaaacaaa ggcaccaaac ttatcaaagt agccgccata cacatagaac ctatggctgt
      421 ttactccaag aaatataaaa gtctagatga tattaaagaa ggggttaaaa tcgccattcc
      481 aaatgatcca accaatgaaa gtagagcttt agatattatt gcaaaaaaag gtttggtaaa
      541 atttaaagat aaggctttaa aaacacctct tgatattata gacaatccta aaaaaattaa
      601 atttgtagaa ttaaagcccg cacaacttcc aagagcttta gatgatgttg attttgctgt
      661 aattaattcc aactacgctc tctctgcaaa tctaaatcct gcaaaagata gcgtatttat
      721 cgaagataaa gaaagcccgt atgtaaacat tcttgttgta agagtgggac atgaaaacga
      781 tccaaaaatc aaagccttaa cccaagctct acaaagtgat aaaatcaaac aatttatcat
      841 agaaaaatac aacggatctg ttttacctgc tttttaattt tgtcccttac ctggggactt
      901 ttttcttaaa tacaaaggag tttttatgaa tttatttaaa attattatac tcgcttgcat
      961 tctaaattta tctagtctat ttgcacaaaa cattactata ggagccactc caaatccttt
     1021 tggtagctta ctagaactaa tgaaagatga ttttaaaaac aaagggtatg agcttaaaat
     1081 agtagaattt tcagactata ttttgcccaa tcgtgcatta gaggaaaaag aacttgatgc
     1141 aaatttatat caacacaaac cttttttaga agaatacaac ctaaagaaag gttcaaattt
     1201 aattgcaaca acgcctgtac ttatagctcc agtaggagtt tatagtaaaa aaatcaaaaa
     1261 tttagaaaat cttaaagaag gtgctagagt tgctatacct aatgatgcca ccaatgaaag
     1321 tagagcttta gagcttttag agaaagcaaa attaatagag cttaacaaaa atactctaaa
     1381 aaccccattg gacataaaca aaaatccaaa aaaacttaaa tttatagagc ttaaagctgc
     1441 acaacttcca agagctttag atgatgttga tattgctata attaattcta atttcgcact
     1501 tggagccggt ctgaatccaa gtaaagatac tatttttagg gaagataaaa atagccctta
     1561 tgtaaattat gttgtggtac gctcagaaga taaaaatagc gaaaagacca aagtaattga
     1621 tgaaatttta agaagcgata aatttaaagc catcattaat gaacattata aagatatatt
     1681 aatcccagct ttttaggagt ataacatgaa tattaaaaaa atatttttaa gtgttttatt
     1741 tacaattagc cttagttttg gagcagataa aaccataatc ataggtgcaa caccaacgcc
     1801 ttatgctgaa attttaaatt tctccaaacc cttatttcaa gaaaaaggtt ggaagttaat
     1861 agttaaggaa tttaatgact ataatatacc taatatcgct ttaaatgaaa aagatttaga
     1921 tgcaaattta tatcagcata aacctttttt agatgatttt aatacccaca aaggaacaaa
     1981 tttaagttct ttaggtgcta ttgttttagt tcctatggct atatattcta actccataaa
     2041 agatataaaa gatattccta atggtgctaa aatcgctata cctaatgatg ctaccaatga
     2101 aagcagagct cttgatttac tagctaaagc aaatttaata gagtttaaaa gtcaaagcac
     2161 ccttaaaacc cctattgaca taagtaaaaa tccaaaaaaa cttaaattta tagagcttaa
     2221 agccgcacaa cttccaagag ccctaaatga tactgatttg gctgttatta ccacaaacta
     2281 tgctcttgga gcaggtttaa accctttaaa agatggtatt tttatggaag ataaagatag
     2341 tttatatgct attgttttag ctacaataaa aggtgaagaa acaagtcaaa aaagtcttgt
     2401 tattaaagaa attttaacaa gcgataaaat taaaaatttt atcatagaaa aatataaagg
     2461 ctctgttatc cctacttttt aactctatac aaagccttct aaaggctttg ttaaacttat
     2521 aaaagctaaa atactattta ttgcattata attcttagga taaaaatgaa aattattttt
     2581 ttaacttttt ttattgtgat aaattatatc caagcagcta gtttagaaga aatcaaaaca
     2641 gcactagcta aagaatttag aaataatttt cctaaaatta taatttctca aattgattta
     2701 aaaataacat cattgcctaa agattttgat caatatgaat ttctaagaat cgctaatgga
     2761 cgttttaatc aagcacaagg ctttttaagg gctgaattta aaactccgca aaatatacaa
     2821 aaaaatgtat tttttagata tttcattcaa gcaaatttag aagttttaaa aagcgaacgc
     2881 actataaaaa gaggagataa acttggagct tttgactata aaagcgtatt gattgatttt
     2941 gataaagttc ctttaaatgc cttaacctta gatgatgtag ataatcttgt agctaaaagc
     3001 aatattaaca aaaacgctat tttaagagca aatatgttta aaaccacagc tttaatacgc
     3061 cgaaatgatc ctataatcgg ggttttaagc gaagcaaatg ttgatgtttt aatcgaactt
     3121 gtggctttgc aaagtgcaaa tatgggcgaa aggattcgtg caaaaaacaa agaaggtaaa
     3181 gttatgcaag gcatcgtagt gggtaaaaat aggatgatta tacaatgaag gttttattag
     3241 gaatttctgg ttcaagcagt gtcaatttag gcttaaaatt attaaaaaat ttagaaaatc
     3301 aatgcgaact ttattgtatt ttaactcaag gtgcaaaact tagtttcaaa gctgaaaatg
     3361 aagtaaattt agaagaaatt tgtcaagaaa attttaaata cactcatttt ttagatgata
     3421 aaaatttaag tctaagtgta gcaagtggat cttttggaat agaaaaaact atcattgctc
     3481 cttgttcgat ttcaagttta gcaaaaattc acgctggttt tgcagacact cttttaatgc
     3541 gtgctgcagc agtagcccta aaagaaagaa aaaaactcat cttaggcgta cgtgaaatgc
     3601 ctttttctac tttaaattta gaacatatgt taaaacttag ccaaatggga gttatcatcg
     3661 cacctcctat tatcgcaagt tattctaaag caaacaatct agagcaaatg gaaaatttta
     3721 tcgtaggtaa atggttagat cttttagaaa taaaacacaa tttatatgaa aaatggcaaa
     3781 atttttagtt taaatttgtt atatttttaa aaaaaattgg agcaaaaatg acttgtttat
     3841 atcctgggac ttttgatcct attaccaacg ggcatttaga tgttataaaa cgggctttaa
     3901 aaatttttga tgaagtcatc gttgccatag caaaaagtga acataaaaaa ccttgctatg
     3961 atttagaaaa acgcaaagaa ctagccctgc ttgcaacaca aaatttaaaa aatgttaaaa
     4021 tcattgcttt tgataattta cttgtagatt tagccaaaga attaaaagtt aatactataa
     4081 tccgtggact tagagcagtg agtgattttg aatacgaatt gcaaattggc tatgcaaatc
     4141 acgcactttg ggaagatatg gaaaccattt atcttatgcc aagtctaaaa catgctttta
     4201 tttcaagttc tattgttcgc tctatagtag cacatggggg cgatgtaagt tctcttgttc
     4261 caaaagaaat tctacctttt ttaaaggatc aatcttgtat gtagtttttg aaggtattga
     4321 ctgcgtagga aaaagtacgc aaatttcact tttaaaagaa atttacaaag acgccatttt
     4381 tacactcgaa cctggcggaa cagaacttgg aaaacattta agagaaattt tacttaataa
     4441 aactcatcct attagcaaaa gagctgaact cttgcttttt ttagctgatc gtgctcaaca
     4501 ttttgaagaa atcttaaaaa ccaatcaaaa caaactcatt attagcgata gaagttttat
     4561 ttcaggcatg gcttatgcca aagattttga aaacgatttg ctttttgctt taaatagttt
     4621 tgctttagaa aatttttttc cacaaaaaat tatcttttta aaaggagatg caaaccttat
     4681 ccaagaacgc ctcagtcaaa aagaactaga tagcatagaa aaacgtggca ttgagtattt
     4741 tttaagtgtg caagataaac tcgaaaaagt gcttcatttt ttaaaagaaa aaatttctat
     4801 agaaatttta acacttgacg caaaagaaag taaagaaaaa ttacaccaac aaataaagga
     4861 atttttacaa tgattaacgc tttaaaagga atgaaagatt tattagataa agatgcatat
     4921 tattatgaaa aagtgattaa aacctgcgaa gaagtagcta aaaactatgg ctttactttt
     4981 atcaatacac cgcatttaga actttgcacc ctttttaaaa gaagcgtagg agaaagttct
     5041 gatatagtag gtaaagaaat gtatgaattt atcgataaag gcgaaaatca tgtttgcatg
     5101 cgtcctgaag gaactgctgg ggtggtgcgt gcctatatag aaaaaaaact cgataaaaac
     5161 actagtgtga aaagatggtt ttatcatggc tctatgttcc gctatgaaag accccaaaag
     5221 ggacgcttaa gagaatttca tcaatttggc gttgaaagtt ttggaaatgc aagcgtttat
     5281 gaagatgcaa gtattatttt aatgttagta gaaatttttt cacgcttgga tattaaattt
     5341 aaattactga ttaactcttt aggctgttta aaatgtatgc caaaatatcg tgaaaattta
     5401 atacattttt tagatagcaa agaaggtttt tgcgaggatt gtttgcgtag aaaaaactta
     5461 aatcctattc gtgttttaga ctgcaaaaat gagcattgcc aaagcttact taacgatgct
     5521 ccgcttttaa atcaaaattt atgctcatct tgtcaaaaag actttgaaat tttacaaagc
     5581 gttttaaaag aaaatggagt ggattttgaa gtggattcta agcttgttag agggcttgat
     5641 tactactcta aaacggcttt tgaattcatt agtgatgaaa ttggtgcaaa agctgctatt
     5701 gctgggggcg gaagatatga tagacttatt gaatatcttg atggaaaaag tggttttggt
     5761 gtaggttttg ccatgggcat agaaagaatt atagccattt tagaacaaaa agaagaaaag
     5821 gttcaaagag aaggaattta tctttgtgct atggatgaaa tttatatcca aaaacttttg
     5881 catatcgcta caaatttaag aaaagaacat aaagtgcttt taagctatga agcaagaaaa
     5941 ctagctaaac atctcgaaaa cgcggataaa aataatgctg aaatttttct ttgcatggga
     6001 gaaaatgaag cacaaaatga aagtttgttt tataaaaatt tagtaaaaaa agaagaaaaa
     6061 atgattaaaa tttcagactt aaagaaggtt ttatgatgga ttatggtatt gatatttggg
     6121 gaaatgaaaa tttcattatc aaaaatggta aagtttgtat caatcacgag aaaaaacctg
     6181 ctattattga tatagttaaa gaattaagag atgatggata taagggacct ttacttttaa
     6241 gatttcctca tctcatccaa aaacaaattg aaaatattta cggaaatttc aataaagcaa
     6301 gaaaggaatt tggctataaa ggaggattta acgctgttta tcctttaaag gtaaatcaat
     6361 accctggttt tgtaaaaaat cttgtaaagc ttggaaaaga ctataactac ggacttgaag
     6421 caggttctaa agcagagctt ttactcgcta tggcttataa taacgaaggt gcacctatta
     6481 ccgtaaatgg ctttaaagat agagaactta tcaacatagg ctttatcgca gctgaaatgg
     6541 gacataatat cactttaact atagaaggac ttaatgagct tgaagctatc atagacatag
     6601 ctaaagaacg ctttaaacct aaaccaaata taggcttacg tgtgcgttta cattctgctg
     6661 gagttggaat ttgggcaaaa agcggtggga ttaattctaa atttggactt acatccactg
     6721 aacttataga agcggtaaat ttactcaaag aaaacaaact tttagaacaa tttaccatga
     6781 ttcactttca tctaggctca caaattaccg aaattcatcc cttgaaaaaa gccttaaatg
     6841 aagcaggaaa tatttacaca gaacttagaa aaatgggagc taaaaatcta aaagctatca
     6901 atcttggtgg cggtttagct gtagaatact cacaatttaa aaatgaaaaa agtagaaatt
     6961 ataccttaag ggaatacgct aacgatgtag tttttatcct aaaaaatata gctgaacaaa
     7021 aaaaagattt agagcctgat attttcatag aaagtggacg ttttgtagca gctaatcacg
     7081 ctgttttaat tgctcctgta ttagaacttt tttctcaaga atacgcagaa aacaaactca
     7141 tacttaaaaa acaaaatcca aaacttatcg atgagcttta tgatctttat aaaagcataa
     7201 aaccttccaa tgcattagaa tacttgcacg atagcataga tcatttagag agtattttaa
     7261 ctctttttga tttgggctat gtggatttac aagatcgttc caatgctgaa attttaactc
     7321 atttgattac aaaaaaagcc atcttgcttt taggtgataa gcaaaatcct gcggatttac
     7381 ttgctataca agatgaagta caagaaaggt atttggtaaa tttttcactc tttcaaagca
     7441 tacccgattt ttggggctta gaacaaaatt tccctatcat gccacttgat cgcttagatg
     7501 aagaaccgac tcgaagtgca agtatttggg atataacctg cgatagtgat ggagaaattt
     7561 catactctaa agataaacct ttatttttac acgatgtaga tgtagaaaaa gaaaattatt
     7621 ttctagggtt ttttcttgta ggtgcctatc aagaagtact tggaatgaaa cacaatcttt
     7681 ttactcatcc tactgaagct attataagta tcaatgaaaa aggctatgaa gttgagggga
     7741 ttatagaagc acaatccata cttgatgcct tagaagattt agactatgat atacacgcta
     7801 tcatggatat acttaatgaa cgcataagta attctaagct tgtaaatgac aagcaaaaaa
     7861 agcatatttt aggggagctt tatcttttct taaatgataa tggttattta aaaagcatag
     7921 gagtttagat gaatttttgg ggtattataa aagaagattt ttctcagcca aaggcacaag
     7981 atccagcttt taattcttgt atagaacttt tttttaatta ccctggagtg tgggctgtag
     8041 taaattaccg ctttgcacat tttttttata taagaaattt taaacgcatt gctagaatga
     8101 ttagtggaat ttcacaattc ttaactgggg tagatttaca ccctggcgca gaacttggaa
     8161 ggcgtgtttt tatagatcac gccaatggag tggttatagg tcaaacagca attatagaag
     8221 atgatgtttt aatttatcaa ggcgttactt taggtggaac aagcctagaa aaaggtgcta
     8281 aacgccatcc aaccataaaa aaaggagtga tcataggctc aggcgcaaaa gtacttggca
     8341 atatcaccat aggagaaaat gccaaaatag gctcaaatgc tgtagtagtt aaagatgtag
     8401 gtgcaaattt aactgccgtt ggcattcctg cttatattat cgaagagcgt aaaaataaaa
     8461 acattagagc catagatgca aattgcgatg acaaactaga aaagttagaa aagaaaattt
     8521 tagaacttga aaatcttata ttaaaacaac ctgaatcaca aaaataataa ttttttataa
     8581 tacataaaat tatatgtatt attatgcgta ttaatttttc ctaaaaaatt aatacaaatt
     8641 ttcacattta ttgaaa
//
LOCUS       DAZAND010000081         8306 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.081, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000081 DAZAND010000000
VERSION     DAZAND010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8306
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.081"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            21..1118
                     /locus_tag="ACHDOB_001416"
     CDS             21..1118
                     /locus_tag="ACHDOB_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HFN3326337.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFMIALFVGMKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
     gene            1208..1780
                     /locus_tag="ACHDOB_001417"
     CDS             1208..1780
                     /locus_tag="ACHDOB_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326338.1"
                     /translation="MKKILVSVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNTKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(1796..2362)
                     /gene="rsmG"
                     /locus_tag="ACHDOB_001418"
     CDS             complement(1796..2362)
                     /gene="rsmG"
                     /locus_tag="ACHDOB_001418"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HFN3326339.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADIGSGAGFPAVFLAFLLQNNFHLFEPNPKKAAFLRT
                     LKIECELSNLHIYKEKVQEYQNIFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRKYCILK"
     gene            complement(2363..2923)
                     /gene="ribA"
                     /locus_tag="ACHDOB_001419"
     CDS             complement(2363..2923)
                     /gene="ribA"
                     /locus_tag="ACHDOB_001419"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HFN3326340.1"
                     /translation="MKIKISEIANLPSKWGNFQIQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLESIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            2980..3963
                     /gene="hemB"
                     /locus_tag="ACHDOB_001420"
     CDS             2980..3963
                     /gene="hemB"
                     /locus_tag="ACHDOB_001420"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HFN3326341.1"
                     /translation="MFKRFRRLRLNENLRAMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDKGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDATLEISAKQALVHARAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            3960..4880
                     /gene="argF"
                     /locus_tag="ACHDOB_001421"
     CDS             3960..4880
                     /gene="argF"
                     /locus_tag="ACHDOB_001421"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HFN3326342.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGTMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSEFYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIVAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            4877..5368
                     /locus_tag="ACHDOB_001422"
     CDS             4877..5368
                     /locus_tag="ACHDOB_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HFN3326343.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            5355..6710
                     /gene="hemN"
                     /locus_tag="ACHDOB_001423"
     CDS             5355..6710
                     /gene="hemN"
                     /locus_tag="ACHDOB_001423"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HFN3326344.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILNTILDTKREVVQM
                     HFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDAEISCEIDPRFLNEEQATVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQPFELTQNALNLVRSKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGVGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            6712..7977
                     /locus_tag="ACHDOB_001424"
     CDS             6712..7977
                     /locus_tag="ACHDOB_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HFN3326345.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIAKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKIEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVSMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFVSPLELIAKAL"
     gene            7974..>8306
                     /locus_tag="ACHDOB_001425"
     CDS             7974..>8306
                     /locus_tag="ACHDOB_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5416 family protein"
                     /protein_id="HFN3326346.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDTEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQT"
BASE COUNT         2878 a         1003 c         1563 g         2862 t
ORIGIN      
        1 tttacaaaaa aggaaaataa atgaaaacaa gttttttagc acatagcgtg gctatagtgc
       61 gatcaaattt taagggtttg ctttttactg cttgtatagt gatttttgct atgtatcttt
      121 ctagtgttca aagtatcaaa gatactaccc atttagcagc gactgccttt gctatcatca
      181 taggagtgtt gctttctcct tggtttttta aataccaaca tcattttcaa gctggagtgc
      241 attttagcgc gaaaaagctt ttaagactcg gtattgtttt atatggtttt aatatcactt
      301 taactgagct tttaagtgta gggttgaaag ggtttttgct ttctgctata gtgatatttt
      361 ttgtttttat gattgcttta tttgtaggaa tgaaaatttt taaactcgat aaagaaactt
      421 ctatgcttgt tggagccgga agtgcgattt gcggtgcggc agcggtttta gcactagagt
      481 caagtttgaa aagtgatcct tttaagggaa ttttagccgt aggtacggtg gtgatttttg
      541 gacttgtgtt tatgttctta tatcccatag ctttttcttt aaatcttttt cctttttttg
      601 atcaaaatgc tatgggggtt tttatgggag ctactttgca tgaggtggca aatgttgcag
      661 gtgctgctga aatggcaaaa gatatggcag gatttgagca aggtgcttct aatgttgcag
      721 tgattataaa aatgatgaga gtgattttgc ttgttccttt tttgcttata gtgacttatt
      781 ttttcgctaa aaatcagcat tcaagcagtg gaaaaactgc aaaaagtatc actatacctt
      841 attttgcttt tgcattttta ggtatgatag ttttaaatac ttatctagca agtaaagaaa
      901 gtattttagg tattgctacg agtgatatta tttctttagg taaaacactt tgtaccttat
      961 gtatcgtttt tgctatggca gctttaggct tgcaaattga ctttaaaaaa tttttaaaaa
     1021 gtggctctag ggtatttggc ttggcttttg ttttagggct tgttttgatt tttggaggat
     1081 attttttaac cttagctttt aaaggtatac tttggtaata aaaattattt tttagaaaat
     1141 tttattttat taatcaacta agaatataat ttaattcatt aattaaattt attaaaaagg
     1201 aataaagatg aaaaaaattc ttgtaagtgt tttaagttct tgcttgttag cttcggcttt
     1261 aagtgctgta tcttttaaag aagatagttt aaaggtttct tttgaaggat ataaaactaa
     1321 agatatgata ggaacaaaag gtgaatttaa aaatgtagaa tataaatttt ctaaaaatac
     1381 aaaggatttg gcaagttatc ttaaaggcgc taaagctacc ataaagccaa gtaatgcttt
     1441 tatgggtgaa ggcaatgata ttataaccaa taatatcaca aaagtatttt tccctgcttt
     1501 attgggagat acggatatta aagttgtttt tcaagatgtg attgcgggtg aaaataaagg
     1561 cgttatttca gcaaaaatta ctatggataa aaaaagtact attgtgcctt taacttatac
     1621 catcaaagat aataaatttg aagctaaagg acaacttgat ttgcatactt ttaaaaatgg
     1681 ttctaaagca ttaaaagcat taagcgatgt ggctgcagga catggtggaa tttcttggcc
     1741 tttagtggat atcagtttta atgctgattt agcagaataa aaagtagcct tagggctact
     1801 ttaaaataca atattttctt aaattatttt caaaaatttc ataatctttt atattttcaa
     1861 gttcttgata aatttcacta cctttccata aaataaaaac cgtattttca tcttttagat
     1921 ttttgcaaat ttcaagcaaa ggcttgacat ccattaaggc tcttgaagtg atgatatcgg
     1981 ctttaaagat attttggtat tcttgaactt tttctttgta aatatgtaaa tttgaaagtt
     2041 cgcattctat ttttagtgtc cgcaaaaagg cagctttttt gggattgggt tcgaaaagat
     2101 gaaaattgtt ttgcagtaaa aaagctaaaa atacagctgg aaatcctgcg ccacttccta
     2161 tatcggcaat attttttgct ttagaaaaat cataaaaatc taaaatttta atactatcaa
     2221 agatattttc atctatattt tttaaatgag taagattgtg aatgcgatta aatttagata
     2281 ataattcttt ataaattttt accttttctt caaagttttt taaatcgtag ttttgcaaaa
     2341 aatcataatc tttaaaaatc atttatttaa gatgtcccat ttgagtttgt tttatgttta
     2401 aatactctac attaaaacga ttaggttcta ttaaaatcgg tatgcgtgtg atgatttttt
     2461 ccttaatgga ctctagtttc tcgggattat ttgtgagtaa attaacctta gaaatttcat
     2521 agtgtttgag tataaattct acaatttcat aagttctctc atcggcttta aagccaagct
     2581 gatgatttgc tttaatcgta tcaaaacctt tatcttgtaa agcataagca ttaaccttgt
     2641 taaaaagccc tatacccctt ccttcttgcc taagataaat caccattccg ccattctttt
     2701 ctatatattt tagtgaaaat tcaagctgtt ccccacaatc acactttaaa cttcctaaag
     2761 catctcctgt taagcactct gaatgaattc ttagattgag tgtgtctttt ggagtatttt
     2821 taaatataca taaatgttct ttatcatttt ctttgaaact ttgtatttgg aaatttcccc
     2881 atttgctagg caaattcgca atttctgaaa tttttatttt catttactac tctctataat
     2941 caaatttatg ttaagatttt agcaaaaaaa ggacaaaaaa tgtttaaaag atttagaaga
     3001 ttaaggctta atgaaaactt aagagccatg gtaagggaaa attctttaag tgtaaatgat
     3061 ttgatttatc cgctttttgt ggttaatgga acggggataa aaaaagaaat ttcttctatg
     3121 cctgatgtgt ttcaaatgag tttagatgaa attttaaaag agtgtcaaaa tgtagttaat
     3181 ttaggcatta aagccattat actttttggc gttttggaaa atgagaaaaa agacagctgt
     3241 ggaagcgatg ctttagatga taaagggctt gttgcaagaa gtataagaga gattaagaaa
     3301 aattttccag atctttttat aatcagcgat ctttgttttt gtgaatacac agatcacggg
     3361 cattgtggga ttatcgatcc aaaaacaaaa agcgtggata atgatgcaac tttagaaatt
     3421 tcagccaagc aagccttagt tcatgcaaga gcaggggtag atatgatagc acctagtgga
     3481 atgatggatg gtattatcac tactttgcgc aaagctttag ataaggaagg ttttgaaaat
     3541 ttgcctataa tggcgtattc tactaaattt gcttcaagtt attatggtcc atttcgagat
     3601 gtagcagaat cagctccaag ttatggagat agaaaaagct atcaaatgga ttttgctaat
     3661 ggtaaagaag ctttagaaga aagcttagaa gatgaagcgc aaggagctga tattttgatg
     3721 gtaaaacccg ctcttgctta tcttgatgtg gttaaagaaa tatcccttca ttctaacttg
     3781 cctttgtgtg tttataatgt aagcggagag tatgctatgt taaaggcagc taaaaatgct
     3841 ggagtgattg attatgaaaa agttttatat gaaactatga tagcttttaa aagagcagga
     3901 gcaaagctta tcatcactta tcatgccaaa gaattagcta aaatgttaaa aggagaaaaa
     3961 tgaaacattt tttaacttta agagattttt ccaaggaaga aattttaagt cttgtaaatc
     4021 acgctagtga gcttaaaaaa gagcctaaaa aacttttaca agataaaact ttggcaatga
     4081 tttttgagaa aaactctaca agaacaagaa tggcttttga attagcaata acagagcttg
     4141 gcggaaaggc tttgttttta agcagtaatg atttacaact tagtcgtggc gagcctgtaa
     4201 aggatacagc tagggtgata ggaacgatgg ttgattttgt aatgatgaga gtcaataaac
     4261 acgaaacttt actcgaattt gcaagatact ccaaagctcc tgtgatcaat gctttaagtg
     4321 agttttatca ccctactcag gttttaggag atttgcttac tattaaagaa tggaataaaa
     4381 tgcaaaatgg tatagcaaaa gttgctttta tcggagatag taacaatatg tgcaattctt
     4441 ggcttattgt ggctgcgatt ttgggctttg aatttagtat agctatacca aaaaactata
     4501 aaattagccc tgaaatttgg gaatttgcta tgaaacaggc tttgatttca ggagctaaaa
     4561 tttccttaag tcatgataaa tttgaagcct taaaggataa agatgtagtc attaccgata
     4621 cttgggtttc tatgggtgaa gagaatgaaa aagaacgcaa gattaaagaa tttgaaggat
     4681 ttatgattga tgaaaaggct atgagcgttg ccaataaaga cgcgatattg cttcattgtt
     4741 tgcctgctta taggggttat gaagtgagtg aagaaatttt tgaaaaacat gcagatgtga
     4801 tttttgaaga agcaagaaat cgcctttatg tggtaaaagc cttgctttgc tttttggata
     4861 atcagagagg aagagaatga aagagctaga aaagtatagc acttgcttaa aacgcattga
     4921 tgaatttagt caaaatctag gaataaagaa aaaagataga acgattttta aaatgaagca
     4981 aagcgagaat gaaaacgaaa aatgtttagt tcttgaaaat ggaagttttg attctcctga
     5041 gccttggttt gtgatcgatg aaaacgatga aattcacact ttgctttctt tacaaagtct
     5101 taagaatata cttgaaagtt taaaacaaag tcaaaaagag aattttgaat tgcgtttaga
     5161 aaaggcgatt tatcaacaaa ttcctgtaga ttttaacgat gtttggacgg ttgccatgga
     5221 tgagatcaag caaaaggcac aaaatggcac catggaagtt agtattgatc ttgaaaaatt
     5281 aatttctaaa atcaaacaag agcatccaaa tttatttgta gatatgcaag cgatgataga
     5341 aagggtaaat caaaatgaga gattataaag cttttgtaaa atactctaaa gcaggaccac
     5401 gttatacttc ttatcctaca gcagtagagt ttaatacaaa tttcaaatac gaagaatata
     5461 tagaaatttt aaaaaagcaa gatagatctt tatcgcttta ttttcattta ccattttgta
     5521 ggagtgcctg ttatttttgt ggttgcaatg ttatttatac agccaaagaa gagagtaaag
     5581 aaaggtattt aacttatatt tttaaagagc ttgatatttt aaatactatt ttagatacta
     5641 aaagagaagt agtgcaaatg cactttgggg gcggaactcc aacttttttt agtgctaaac
     5701 aacttcaaaa tttgatttta aaaatcagat ctgtttttgg aaatttttct aaagatgcag
     5761 agattagctg tgagatcgat ccgcgttttt taaatgagga acaagccaca gttttaacgc
     5821 aaaatggctt taatcgtatc agctttggag tgcaggattt tgatgaaaaa gttcaaaaag
     5881 aaattcatcg catccagcct tttgaattaa cacaaaatgc tttaaatctt gtaagaagta
     5941 aaggcataaa gtctgtaaat atggatttaa tttatggttt gccttatcaa aatttacaaa
     6001 gctttacaca aactttagaa aaagttatgc ttttaaaccc tgatcgtttg gcgattttta
     6061 attacgctca tgtgccttgg cttaagaaaa atatgagaaa atttgatgaa aataccttgc
     6121 caagtcctga tgttaagctt gaaattttag aattttgtga gaaattttta agcaaaaatg
     6181 gctataaaat gataggaatg gatcattttg caaaagaaaa tgatgagctt tttaaagctt
     6241 tagaaaatgg aactttgcat agaaatttcc aaggttatac tactaaaggc ggtgctgatt
     6301 tagtcggtgt tgggcttaca agtataggtg aaggacaaag acattatgcg caaaatttta
     6361 aagatatgtc aagttatgaa gctgcattag atagaggagt tttacctttt gaaagaggcg
     6421 tagctttaag cgatgatgat gagcttagaa aagcagtgat tatggagtta atggcaaatt
     6481 ttaagcttga tattaagtca atagaaaaag aattttgcat tgattttcag gagtatttta
     6541 aagaggattt aaaagcttta gaagaataca aagattttat taattttgat gaaaatttta
     6601 tcaaagtcaa tgaaacaggt gttttgctta taagaaatat tgctatgtgt tttgatgctt
     6661 atatgaaaaa cattagtgaa gataaaaaag tattctcaaa aacggtgtaa gatgaaattt
     6721 agtcaaataa gtgatgcttg tgttaaatgt ggcaaatgta tacctgtttg tactatacat
     6781 gaagaaaatc gcgatgaaat tactagtcca agagggtttt tagatctttt agctgcttat
     6841 aaagagggaa gtctagaact tgataaagaa gctaagaaag tttttgaatc ttgtttttta
     6901 tgcaccaatt gtgttgaagt atgtccaagt aaattaagag tagataatgc catagaagaa
     6961 gttcgttatg atatagctaa aaaatttggt atagcttggt ataaaaaact tatttttttc
     7021 tttttaagaa gacgcaaaat tttagatttg gtagctaagc ttggctatgt gtttcaaagt
     7081 tgtgcgttta aaattcaaaa tgagaatgaa aatacaggta tgaaggcaag attttccatg
     7141 ccttttgtta aaaagggaag attacttaca agttttaata aaaaaagttt cttaaattct
     7201 aatccaaaat ttatcaataa tgatggagaa aaaaccatag gtttttttgt aggttgtttg
     7261 gcgaattatt tttacataga tacggctaat gcagtgctta aaatcgctaa ggaattaaaa
     7321 atcaatgtgg atttgatgaa agaacaagtg tgttgtggag cgccgcaatt ttttacgggt
     7381 gattttaaaa gtgttgaagt tttggctaaa aaaaatattg agtattttga aaaaaaaata
     7441 gaaaaattag atgctattat agttcctgag gccacttgtt cggctatgtt aaagatagat
     7501 tatgaacatt tttttataat gcaaaatgat ttagactggg caaaacgcgc aaaatgtgtg
     7561 tcatctaaga tatatatggc tagcgagtat ttttataaat ttacttcttt ggaagaaatt
     7621 ttaaaaacaa aaaataaatt taattatagt attacttatc acgatccttg ccatgcaaga
     7681 aaaatgcaag gagtttttaa agagccaaga gaacttttaa aaacaaatta tcattttgta
     7741 gaaatgagta attctaatac ttgttgcggt tttggcgggg tgagtatgca aacggattat
     7801 tatgatagag ctttaagtgt agggcttaaa aaagcacaaa tgatcgatga aagtaaggct
     7861 agtgtggtaa gcgccgagtg ttcagcttgc agaatgcaaa tttcaaatgc attagaacaa
     7921 aattcaagca aggttgtttt tgttagtcct ttagaactta tagcaaaagc tttgtgatga
     7981 tgaagatagt atttaaaggc aaaagttctg aatacgaaat tcaaagatcg tgcttttgtg
     8041 ttgatgcttt tgtgattaaa gataagattg aagaacgaga tggcgttgat tttatcactt
     8101 caaatgtaga tcttttggaa tttagtgatg acagttttac ttttgaagaa attgtaaaac
     8161 attttaatat ttgtgatact gaagatatga ttatcgttga agattttgac atgaaatcaa
     8221 acaaagataa tcaaaaccaa gaagatgata tagaacacaa catcttaaaa tccgaaaaaa
     8281 taatacatga aaacacaaaa caaaca
//
LOCUS       DAZAND010000082         7938 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.082, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000082 DAZAND010000000
VERSION     DAZAND010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7938
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.082"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..822
                     /locus_tag="ACHDOB_001426"
     CDS             <1..822
                     /locus_tag="ACHDOB_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 90"
                     /protein_id="HFN3326347.1"
                     /translation="QTRVKYYNQIDEFFTPTAKEKIGKFPFKSTSYAFDAYEISKYFK
                     DEFLWNKEFGDVRHTFKEATICKSRSLENNINNILLKLDKNRHFCFLKDNINYENKKD
                     IAIFRGAVYQKYRKEFFDSYFGRTFCDIGDTSKQPSQWKKNFLNKKEQMKYKFIISLE
                     GNDVASNLKWAMNSNSLVLAPKITCETWFMEGTLKPNYHFALIDNENLSAVIEYFKSR
                     PKDALEIINNAHQYIKKFLDKKKEFHIGILVLTKYFYYSRQLELNKKRDILELIK"
     gene            962..1037
                     /locus_tag="ACHDOB_001427"
     tRNA            962..1037
                     /locus_tag="ACHDOB_001427"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:995..997,aa:Ala,seq:ggc)
     gene            1041..1116
                     /locus_tag="ACHDOB_001428"
     tRNA            1041..1116
                     /locus_tag="ACHDOB_001428"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1074..1076,aa:Val,seq:gac)
     gene            1144..1674
                     /locus_tag="ACHDOB_001429"
     CDS             1144..1674
                     /locus_tag="ACHDOB_001429"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFN3326348.1"
                     /translation="MQNTIIQKAVHKDLNSILEITKDALNAMKAMNFHQWDENYPNEI
                     VFKEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDEKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(1654..2256)
                     /gene="leuD"
                     /locus_tag="ACHDOB_001430"
     CDS             complement(1654..2256)
                     /gene="leuD"
                     /locus_tag="ACHDOB_001430"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HFN3326349.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(2258..3670)
                     /gene="leuC"
                     /locus_tag="ACHDOB_001431"
     CDS             complement(2258..3670)
                     /gene="leuC"
                     /locus_tag="ACHDOB_001431"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HFN3326350.1"
                     /translation="MTMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSIDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIRKLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGHKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(3657..4733)
                     /gene="leuB"
                     /locus_tag="ACHDOB_001432"
     CDS             complement(3657..4733)
                     /gene="leuB"
                     /locus_tag="ACHDOB_001432"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HFN3326351.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAHGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHTSPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIAHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENDNG"
     gene            complement(4730..6265)
                     /gene="leuA"
                     /locus_tag="ACHDOB_001433"
     CDS             complement(4730..6265)
                     /gene="leuA"
                     /locus_tag="ACHDOB_001433"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HFN3326352.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRVLDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENK
                     FILEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPALKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGISTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            6585..7214
                     /locus_tag="ACHDOB_001434"
     CDS             6585..7214
                     /locus_tag="ACHDOB_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326353.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(7250..7894)
                     /locus_tag="ACHDOB_001435"
     CDS             complement(7250..7894)
                     /locus_tag="ACHDOB_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HFN3326354.1"
                     /translation="MNKKLLSIIASATLFSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FTTHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIG
                     ALYDLTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
BASE COUNT         2732 a         1450 c         1056 g         2700 t
ORIGIN      
        1 caaactcgag ttaaatatta taatcaaata gatgaatttt ttacacctac agcaaaggaa
       61 aaaataggaa aatttccttt taaaagcacc tcttatgctt ttgatgctta tgaaatcagt
      121 aaatacttta aagatgaatt tttatggaat aaagaatttg gcgatgtaag acatactttt
      181 aaagaagcaa ctatttgcaa atcgagatct ttggaaaata atataaataa tattttatta
      241 aaacttgata aaaataggca cttttgcttt ttaaaagata acataaacta tgaaaataaa
      301 aaggatatag cgatatttag aggagcagta tatcaaaaat atcgaaaaga attttttgat
      361 tcttattttg gtagaacttt ttgcgatata ggagatactt caaaacaacc tagccaatgg
      421 aaaaaaaact ttttaaacaa aaaagaacaa atgaaatata aatttataat ttctttagag
      481 ggtaacgatg tagcaagcaa cttaaaatgg gctatgaatt ctaattcttt agttttagct
      541 ccaaaaataa cttgcgaaac ttggtttatg gaaggaactt taaaaccaaa ttatcacttt
      601 gctttgattg ataatgagaa tttgtcagca gtaattgaat attttaaaag tcgcccaaaa
      661 gatgcattgg aaattattaa taatgctcat caatatatta agaaattttt agataagaaa
      721 aaagaattcc atataggaat tttggttttg accaaatatt tttattattc tagacaactt
      781 gaacttaaca aaaaaagaga tattttagaa ttaatcaaat agtaaaatta ctctcattaa
      841 ttctctaatt tttcataaaa aataaatctt tttatacata tattacatca taaattaaaa
      901 atttgatttt agttttcagc caaaaacaag taatattgcg ataaaatctc agacttataa
      961 aggggcatta gctcagctgg gagagcacaa cgctggcagc gttggggtca gcggttcgaa
     1021 cccgctatgc tccaccatat ggttccgtag ctcagctggt agagcactac cttgacatgg
     1081 tagtggccgt tggttcaagt ccaatcggag ccaccatcac ccttccttat acaaaggatt
     1141 atcatgcaaa acactatcat acaaaaagcc gtccataaag atttaaattc tatacttgaa
     1201 atcacaaaag atgctttaaa tgctatgaaa gctatgaatt ttcatcaatg ggatgagaat
     1261 tatcccaatg aaatagtttt taaagaagat atacaagcac aagaacttta tgtgtttaaa
     1321 gaaaatgatg aaattttagg ctttatctgt atcaatgaaa aatttgaacc tgaattttac
     1381 aaacaagtta tttttaacaa aaattatgat gagaaagcct tttatctaca ccgtttagcc
     1441 gtcaaacaaa atgcaaaagg caaaggcgta gcacaaaaac ttttaaattt ttgcgaaaat
     1501 tttgccttgg aaaatcacaa ggcaagttta agagcagata ctcatagtaa aaattttcct
     1561 atgaattcgc tttttaaaaa gcttgatttt aatttttgtg gaaactttga catacctaat
     1621 taccaagatc cttttttagc ttatgaaaaa attctaaacc aaaaagcttt ttgagttttt
     1681 ttcataggct ttgatttgtg cttcatgttt taaagttaaa gctatattat caagcccttc
     1741 caaaagacaa attctgtgaa aatcatctaa atcaaaagaa aaaatcttat ctttaaaaaa
     1801 tactcttttt tccaacaaag aaatttctat atttttatct tgggattttt ttaactcatc
     1861 aactatttcc aaaacctcat ctttagcaag ttctatagtg agcaaaccgt ttcctaaggc
     1921 attgttttta aaaatatccg caaaagaagg tgcgataata gctctaatac cataatcaac
     1981 caaagcccaa ggcgcatgct ctcttgaaga gccactacca aaattttcaa aactcaccaa
     2041 aatagagcta ttttgatatt cttttttatt gagattaaaa tccatattta aaacactttc
     2101 tttatcatct aaataacgca aatcatggaa caaatgcttg ccaaaacctt gcttagacac
     2161 tgcaagtaaa aattgcttag gtataatttg atctgtgtct atattggcat attctaaagg
     2221 acaagctata cctttgtgta taataaattt ttgcatatta aactcctaaa tactttctat
     2281 tatcacaaat aacaccttct atggcacaag ctgctgcact tgcaggactc atcaaatgag
     2341 tgatagaacc tttgccttgt ctgcctacaa agttacgatt tgaagttgaa gcaactcttt
     2401 gacctgaatt tgctttgtca tcattcatac caagacacat agaacaccct gcatatctcc
     2461 actcacaccc tgcctcgata aaaatcttat cgagtcctaa attttcagct tcttttctta
     2521 cttgcattga accaggcacg attaaagctt taacattttt atgaattttg tgccctttta
     2581 agatatcagc ggctatttta agatcttcta aacgcccatt tgtgcaagat cctataaata
     2641 caatgtcgat ttttacccct tctataactt gatcttgctc taaatttaca taagataaag
     2701 catcaagcaa agatttttgc tcactttgat ttttaaaatc acttattttt ggaatttttt
     2761 catctatgcc aatcacttgc gaaggatttg ttccatagct aatttgtggt tttatcttgc
     2821 ttacatctag agtaatactc tcatcatatt ttgctccttc atcgcttctt aaactcttcc
     2881 aatactcaca atacttttga aattcttctc ctttaggtgc aaattccttt cccttaatat
     2941 actcaaaagt gatctcatca ggagctatca tacctacttt cgctccaaat tctatagcca
     3001 tattacaaag agtcattcta gcttccatac ttagttttct tataagttct ccgcaaaatt
     3061 ctatagcata acctgtgcct tttgccgtgc cgtattgtgc gatcaaatat aaaatcaaat
     3121 ccttagcata aacgcctttt tgaaactgcc ctttacattc gattttcata gttttaagtt
     3181 tggcttgttt taaagtttgc gttgccatga catgctctac ttcactcgtg cctataccaa
     3241 aggctaaagc tccaaaagct ccatgtgttg ccgtatgaga atccccacaa actaaagtaa
     3301 ccccaggtaa agtaaagcca agctcaggac ctactatatg aactatgcct tgatttttat
     3361 ctccaagtcc taaaagcctt actccaaatt ccttagtatt ttgcatcaaa gttgtaattt
     3421 gctcttttgc catatcagaa caagcattta aatctatact tttagttgaa acatcatgat
     3481 ctatagtagc caaagttaaa tccgctcttg ccattctacg cttagccatt ttaagccctg
     3541 aaaatgcttg agggcttgtt acttcatgga ttaaatgtct atcgatataa agtataggaa
     3601 gttcgttttt gccttcataa accacatgag catcaaagac tttttcatat aaagttttag
     3661 ccattgtcat tctcctttaa aatttctaaa atacaatccc ccatttcatc ggtatttaaa
     3721 tacgacttag catttaaatc cttagtcatt tttccttgtg ccaatgccaa agatatagca
     3781 ttttctatat cctgtgcggc ttgttcttct ttgaaactat actttaacat caaagccgca
     3841 cttaaaattt gagctatggg attggctata tttaaatgag ctatatcagg cgcacttcca
     3901 cctgctggct cataaagtcc aaaaccttta tcattcaaac ttgctgaact taacaaaccc
     3961 aaagatccat taatggcagc taactcatca ctcaaaatat caccaaaaag atttgaacaa
     4021 agcataacat caaaaatgct aggatttttt acaatctgca tcgcagcatt atccacatac
     4081 atgtactcta agtttatatc ttgataatct tttgcaacat ttgccaccac ttctcgccac
     4141 aaaatagaac ttgctaaaac attcgccttg tcgattaaat gcactttttt ctttcttatt
     4201 cttgcacttt caaaagcgat atgagctatc ctttctatct cttttttagt gtaaatttca
     4261 gtatcatacg cactttcttt acctaaatct tgcttaccaa aataaatccc acctgtaagc
     4321 tctctaacac ataaaatatc cactcctttt tggataatct cattttttaa aggtgaagta
     4381 tgagttaaac tttcataaat tttacaagga cgcaaatttg caaacaaatt aaaatgcttt
     4441 cttaaaggca aaagcgaggc tctttcaggt ctttgatcta tgggcaaatt atcccactta
     4501 ggccctccaa cagagccaaa taaaatcgca tcactttgct cacaaagctt taaagtttca
     4561 tcacttaaag ccactccatg agcatctata cttgcaccgc ctattttagc ttcattaaat
     4621 tcaaaactaa aattgtattt ttgcgcgata aaagttaaaa tttttaaagc ctctttcatt
     4681 accaaaggcc ctataccatc tcctgctaag acagctactt tataagtttt catgccattt
     4741 tcctttcttc tacttttaaa gagcgataaa tcgcattgta agcactcaca aaagcttgtg
     4801 ctgaagcttc tataacatct gttgaaattc cttttccatg gaattttctc cctttaaatt
     4861 ccaaatccac atccacttgt ccttgagcat ctacccctga actttttgca ttgatactat
     4921 aagcttttag cgcaggcttt aaattcgtta tcctagcaat gcagttaaaa actgcttcaa
     4981 caggaccatt tcctgtgcaa gcttcagttt ttaactcttc tttaatacgc atacaaacac
     5041 aagcagttgg gatattgcca ctaatcacgc ttaatttttc aagtataaat ttattttctt
     5101 cttcattttc atagcttaaa aacatcaaag cttccaaatc ataatcatac acttgaccct
     5161 ttttatccgc aaggcgtaaa aaacgctcat aaacatcatc taaattataa gtattttcat
     5221 catagcctaa attttcaagg caagttttta tcatagccct tccacttctt gccgtcatta
     5281 acatacgatt ttcatgaatt cctatggcac tagggcttat gatctcgtaa gtttgcctat
     5341 ttttaagcac tccatcttga tgaatgcctg aactatgaga aaacgcattg ctacccacta
     5401 tagctttatg cgaaggtata ctttcattag tgatagctga aactaatttt gaagttttaa
     5461 agatattttc acatttaata tcagtataaa aaccttttaa ataatctttc ctagttttta
     5521 tcgccataac cacttcttct aaagcacaat tacccgccct ttcgccaagt ccatttatag
     5581 tgcactctat ctgtcttgca ccttgtaaaa tagcacttaa actattgccc gttgccatac
     5641 ctaagtcatt gtgacaatgc acagaaatga tagctttgtc tatatttggc actttgttaa
     5701 ataaaatttt gatgatatta gcaaattcac ttggcaaggt atagcctacg gtatctggga
     5761 tatttatagt tttagcgcct gcttttatcg cattttccac cataaaacaa agattatcta
     5821 tcggagttct tcctgcatct tcgcatgaga attctacatc atcagtataa gatcttgctc
     5881 ttataatcgc tctttttgcc atagacaaaa tttcatcaaa atcttttttt aatttatctt
     5941 gcatatgcaa agtcgaagtg gctataaaag tatgaattct aaaatgcttt gccactttta
     6001 aagcttcata agccatatct atatctttat ccaatactct agaaagtgcg caaatagttg
     6061 agtttttcac cttagaagcg atcttttgca ccgctttaaa atccccttgt gaagataccg
     6121 gaaaacctgc ttctataaca tctacgccta aattttcaag cgctaatgca atttgtaatt
     6181 tttgattgat acctaaagaa ctacctaaag cttgttctcc atcacgtaaa gtggtatcaa
     6241 agattatgat tttattatct ttcatgattt aatcctttaa aaccaaacag actgaatgaa
     6301 ttaaaaattc aaaaacttaa caacaatgat aaaaaattaa aaatgtaaaa aatgattaaa
     6361 aataaaattg agttttagag tgagagttgc agtagcagat taaaagtatt gtctttactt
     6421 ttttgttgga ctgaatttaa aatttcaaaa atttgtttca tcttttcctc ctttgttaaa
     6481 attaatactt aatgtatcat atttttagta aatgtgtttg taaaattctt aaattaagaa
     6541 aattattgat ataattgtaa ttttaagtaa caaaaaggaa gttgatgtta aaagaactct
     6601 tagagattaa aaaagaaatg gaacctgtta tccacgaagc caatgtgaaa ttaaatgtcc
     6661 tagctcgtga agtcatagtc cgaaaaaaag aatacgaaat ttatgggcct atggtagatc
     6721 gtgtttatct tgataatgcc atttatgtta aagttatgtc aagtggacgc gatgtaaaaa
     6781 cagacaatgt gactataaaa aatggttttt atatggtttt tgttgcccct gaaaaagaaa
     6841 gtacaaaaga tatcaaaaat aaactcaaag tagcttatga aggacttgat aacaaattta
     6901 tcgctacact tatacgatct tgccaacgct ttaaagagat cataaacaaa acccaagcta
     6961 cacttgctaa agcttctaaa atgaatgtag tagtaaaaac aaatttaggc gaagcaagtg
     7021 ctgctctaaa atttaacatc actatagaat atactaaaga gaatcaaaaa ctcactcgtg
     7081 aaaattcaaa atcagcagga agtttcagag atactaaaac ttatatcaat cttgtagtag
     7141 aaaaaaatac agattctcaa atttgtgaaa aactacttga tgatgttgaa aaatacttta
     7201 tcggtggagg ttgatttcat taatgcaagt tataaaaact tgcattagat taaaatttat
     7261 aattatatcc taaatataca ccataatttg tttgtttagg atcgtaaaag tttgaaccca
     7321 ctttattttg ataaaaattt ctagaattat aatgaatttg ctctgcttta aagcctaatt
     7381 ctatttcatt atgtggtgtc aaatcatata aagcacctat tttcgctcca taaaaataac
     7441 cgtcaaaatt ttgcgacaaa gataaaaagc ttgtttttaa ggtaagatct gttcttgcat
     7501 atcctccata cacacctaaa acagctctgg ttttttcaaa aagcttagga gtaaaatcat
     7561 aacctgttaa aaatttatgt gtagtaaaat caccttcgat ttgaatttta ggagttttga
     7621 taaaatcact aaattcatca gaataattat aaccagcata aattctatga ttttcattta
     7681 aacgatatcc aagttttaga ccaaacgatg gtatattacc tgaaatatct ccattaaaat
     7741 tttgctttgt attcttatgt tttaactcac tttttacttg agcatgcatc caagctgcat
     7801 cagcacctat aaaaaaacca gaattctcat ctgctaaagc caaatttgaa aacaaagtag
     7861 cacttgcgat aatgcttaat aattttttat tcataaccta actccttata ataaaattcg
     7921 atctaaaaaa tttagatc
//
LOCUS       DAZAND010000083         7807 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.083, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000083 DAZAND010000000
VERSION     DAZAND010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7807
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.083"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            109..2669
                     /locus_tag="ACHDOB_001436"
                     /pseudo
     CDS             109..2669
                     /locus_tag="ACHDOB_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344364.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2766..4469
                     /locus_tag="ACHDOB_001437"
     CDS             2766..4469
                     /locus_tag="ACHDOB_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HFN3326355.1"
                     /translation="MKKLNKLSLSLVVGSLLFTQSYALPSGGKFTHGTSGSISVSGGT
                     MNISGSKTNSVIQWGGGFNIANGETVNFKGNGYNYLNIVYGSKSSHIDGTLEGGTNNI
                     FLINPNGIVVGKDGSINANRVFLSASSIGDKEMKEFAKDGKISAFEGNPLTTASPVIK
                     SNAGNVINLGTITAGERVVMVGNQVSNMKYGSTDYGKFIFTNKKEQSNTVYLDVYSND
                     IFVIRGPASNTIKKEDSVMLSIRPNKGSTGPGGDPTDTIGYKETSDLVAKDNISNEVL
                     NSIFNDLKFNSSVDISDLSKFYKDGKILTADELTSINQSMDFITALYGQTQDSNNATF
                     ANALKEVLGNSYGNLGKANQAIIKTKEILSQIPKITEQQKNIQKAYDQAVDAYNEAVK
                     KYNAALSGVTGSNASETITALKTVLDKAYNDLKNAEANLESTTASNNSSLKSSNETLA
                     SVSIDGYKLTVNGEYLADYKTVNKPNDNNSGSNNGNDGTDSGDINNGNNNGSNNNPND
                     TIGQQEPDIATALLMQTTDEDPNINEDDKQASIDEASTQESGNACIVSDNFKAGNPCS
                     R"
     gene            4793..6523
                     /locus_tag="ACHDOB_001438"
     CDS             4793..6523
                     /locus_tag="ACHDOB_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0046930 - pore complex [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HFN3326356.1"
                     /translation="MLEQSPYKEDANLKNYNNTLKVKDGVIIIDHSNTSDDNNSKTIN
                     TKKNTQKDNNNTQKNQPNLSNDNTLKTKTPNSNTPSLKNTSKEESIHKVSFSFHITNK
                     NINFKDLGLDEQVLQEALNDYKKESISVQDLQDIANIISYYVQVSGYPAATAYIPQQE
                     LKDQIQINITLGVLGKYVVQNNSSVRDYAIESKLPNHKGEIITTKLVEDAVYKVNEMY
                     GIQTLASLKAGDNPGETDVVIETTPSDSFVSVLFYGDNYGIKESGRYRGGASMSFNNI
                     AHQGDSLNAYLQRSDEAQTNYGISYTTFLGNLKITPSYSKGNYTLGGIWREFDFIGTS
                     ENLGIDLKYPLWITTYNSFYLTSSYYHKKLSDSKFDILTFDKSSDTISFGIEGVYNGI
                     SNDSFSYSANVSYGNVKDEGMTIVGIGTSKVGGVEFGKFAKLNVNLNNAYFFNDTFTH
                     LFSLNYQQVINGATLDSSETISLGGPYGVRAYNNGDGEGDNAVVASFGLRMATPLKDF
                     YITPFYDIGYSWYENDSYTNYMDAYGLQLLYNKTGNFYVKLDLARALKKYKLDDDYSS
                     KAYVSFGKYF"
     gene            6578..7177
                     /locus_tag="ACHDOB_001439"
     CDS             6578..7177
                     /locus_tag="ACHDOB_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HFN3326357.1"
                     /translation="MDKLITWNEKYSIHDTMIDIQHQKLFELAGKVESAVYKFVKREE
                     LKEILTELFNYMKEHFDNEEQYMQEIHYPYLNEHKIMHKNIIRDMSYLIQNIKTTNDL
                     KEKLYTIMSEWLLEHILHHDVMIGKWIKAHNKNTKEEETKQEELTEDSQEKLEFIYSC
                     PCKTTHALSYNEHLDILYHNKNLKCKNCQQTLFYFKNPI"
     gene            7187..7794
                     /locus_tag="ACHDOB_001440"
                     /pseudo
     CDS             7187..7794
                     /locus_tag="ACHDOB_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854639.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
BASE COUNT         3112 a         1084 c         1198 g         2413 t
ORIGIN      
        1 agaattgcac tcgttttttg cgatgttaca aaacattgtt attttaattt tattttccaa
       61 ggacatctat gccagctatt aagcttttta acttcacggg ggcggggtat agagaaattt
      121 tgttttaaac tttctattgt taccttctta agtatcaacg cttttgcagc cactcaagca
      181 aatactacag acaatcgaaa tttcaatatt ccagagcatt attttaatga taacgaactt
      241 tatgataaaa gcaattctac ttataaaaaa ctccaaggta taaattatta tgctaagagt
      301 tctaaacaag atattaacaa tattacttta atttataaca atcctaaacc aaatattaca
      361 aatataaacg atttaaattt taaacattat ttacttactc ctgatatgag agaagatgaa
      421 gttctttctt ttaaagcaag gcatggtgtt aatacagccg atcatagtat aaaaacagtt
      481 aaagtgcttc cttttttaat cacagcaaaa accgatcatg ctgatgcaag ttataataaa
      541 cttatattag aacaaggaga acttagttcg gttttttatc ttaaacctaa agatactcat
      601 ataaaaaacc ctagtaattc taaaagcaat caacgcatga atttcttaat gagttctacc
      661 tttactcatt atggtaatgc aagctataac caaaccatac ttcaaaaaga tgctcatatt
      721 agtatgggag ttgagaacac ttatgattta gccttaaatg gtgctcctta tttaatcgga
      781 gctatagcca cttatggaga ttctacaaat aatagtttaa atatagaagc aggtagcagt
      841 gtagagtttt ttacttcctt acctaaaaaa gataaaaatg gtaataatac ctttgatgaa
      901 agaatcactc accttgtagg tggtttagct tatcaaggta atgtaaaaaa caataaaatc
      961 tttatcaaag atgctaatat gattatccat ggtccaagca aagcttatgc tagttcagct
     1021 gctgctcata ttagcgcagg ttatatagat agtggaacag ataaaaactt tcaagccagt
     1081 aaaaaccttt tagacataga tggttttaat cttgatatgt atatgaacca tgataaacaa
     1141 cccctagctt ataattctgt tttatttgct gatttttggg gtggaaaaac cgaacaagga
     1201 caagccttag ataatactat caatttaaaa gatattaaaa acctaaaaaa agataaaaac
     1261 aatgagaaca tttttgctca agctttgttt aacttctatg caggagcttc taataatgga
     1321 gaagcaaatt ataatacctt aaacatagaa ttaaaacatc ctttagaaat cgctaataac
     1381 ttcttaggtt ataaccaaca ttctttttat ggtggctttg caactaaagg agctaatcat
     1441 aataccatta acattaaaaa cgatcttacc acaaccgatc tttctcaaag ctataaagat
     1501 gctttaaata ttgtagctgc tagaacctta gaaggcagtg cggattataa taaagtttat
     1561 atcaataatt ctatgtcaac cttacctgta tacatttata cagctaagaa aaacattctt
     1621 aataatcaag acttttatcc tagtggtgct aataacaatg aagtagtgat taaagacttt
     1681 gcttctttta gaaatctaac tgtattaaca gaagctaaag aagcctctta taatactata
     1741 aattacaaca atgttcaaag cattaccgat gcaagtaata tagataaagg ttctaaaatc
     1801 atcataagag ctttagataa agccaatcat aataccatag atataaaaaa ctattcttct
     1861 aatgcagctg ataatgctta tttgattatg gcttacaatg aagcagctta taataaaatc
     1921 attatcaatg atactttatt tggtgtagct tcagataaaa gagaaggaat tttaagtatt
     1981 atagctggac tttcaaacaa tgcccatgat aataccttaa tcataaacaa tcttaatctt
     2041 gatgagtata aaaataacaa ttctattttt atagctcctt cagccattac aggtttaagt
     2101 gaagctaaat cttataataa taccttatat ataggcggga atttaaatat atttaaaaac
     2161 actttcatag atatattagc aggggcttta gtgcattatg aagatagcaa tagtgcttct
     2221 aatgctgtag ctccttcaga tatcagttta agtaaaaaca atagactgat ttaaatacta
     2281 aagttgaagc tagaattatt aataactttg agcattatta tcttattgta tccaataaaa
     2341 tcaacacaac cccccttttg aagtcatacg atgctcctat taatatttct agcgagggag
     2401 tattagctct ttacaccctc aaagagcaat acccctacct taaaaataaa gaaatcttaa
     2461 tcttacaaag tgagcaaggt tttatagatg aaaattctaa tactttaaat caagaagaac
     2521 ttcaaagctt tattgaaaaa atgcaaaaaa acaaagaaga ttttaaacta agttctatag
     2581 atagattaaa aaagatgaat ttacaaaaac tttcttatga agtaagaata tcccaagatg
     2641 gtaaaagcat ttacgcaaag ataaaataaa tcattcctat cttaaagata ggaatctttt
     2701 gcttgtattt ttataaatat aaacaaaaga ttcttaaatc ttaatcttac aaaaaggagc
     2761 aagtcatgaa aaagttaaat aaactttctt tgtctttagt tgtaggttct ttacttttta
     2821 cacaaagcta tgctttacca agtgggggta agttcactca tggaacaagt ggaagtataa
     2881 gtgttagtgg tggcactatg aatatctcag gaagtaaaac aaactctgtt atccaatggg
     2941 gtggtggttt taatatagca aatggtgaaa ctgtaaattt taaaggtaat ggctataact
     3001 acttaaatat tgtctatggt tctaaaagct ctcatataga tggaacacta gaaggtggta
     3061 caaacaatat ctttttaatc aatcctaatg gtatagtagt gggtaaagat ggaagtatta
     3121 atgcaaatag agtgttttta tctgcttcat cgatagggga taaagagatg aaggagtttg
     3181 caaaagatgg aaaaatttca gcatttgaag gaaatcctct gacaacagca tcacctgtaa
     3241 ttaaatccaa tgcaggaaat gttataaatt taggaactat aacagcagga gaaagagttg
     3301 ttatggtagg caatcaagtt tcaaatatga aatatggtag cactgattat ggtaaattca
     3361 tttttacaaa taaaaaagaa caatccaata ccgtctatct tgatgtctat agtaatgata
     3421 tatttgtcat tcgtggtcct gcatcaaata caataaaaaa agaagactct gtaatgttga
     3481 gtataagacc taataaaggc tcaactggac caggaggaga tccgacagac acaataggtt
     3541 ataaagaaac tagtgatctt gttgctaaag ataacatctc aaatgaagtt ttaaattcta
     3601 tatttaatga cttgaaattt aattctagtg ttgatattag cgacttaagt aaattttata
     3661 aagatggaaa aatattaaca gctgatgaat taacaagtat taatcaaagt atggatttta
     3721 ttactgcttt atatggacaa actcaagata gcaataatgc aacatttgca aacgctttaa
     3781 aggaagtatt gggaaattct tatggtaatc taggaaaagc taatcaagcc attattaaaa
     3841 caaaggaaat tctttctcaa attcctaaaa taaccgaaca acaaaaaaat attcaaaaag
     3901 cttacgatca agctgtagat gcttacaatg aagcagtgaa aaaatacaat gctgctttaa
     3961 gtggagtaac gggtagcaat gctagtgaaa ctataactgc tttaaaaact gttttagata
     4021 aagcatataa tgatttaaaa aatgctgaag ctaaccttga aagcactaca gcaagcaata
     4081 attctagctt aaaaagttct aatgaaactt tagcaagtgt aagcatagat ggttataaac
     4141 tcacagttaa tggagaatat cttgcagatt ataaaactgt taacaagcct aatgataaca
     4201 atagtggttc caacaacgga aacgatggaa ccgattcagg tgatattaac aatggtaata
     4261 acaacggttc taataacaat ccaaatgata ccataggaca acaagaacct gacattgcta
     4321 cagctttgct tatgcaaact acagatgaag atccaaatat caatgaagat gataaacaag
     4381 caagtataga tgaagccagt actcaagaaa gtggtaatgc ttgtatagta tcggataatt
     4441 ttaaagcagg aaatccttgc tcaagatgat taaaatccaa aaggttaaaa gccttttgga
     4501 tcttgttaaa aattaataaa acaaacaaaa tttaaagatt aaaaatcaaa aaagattgat
     4561 aatcaatcaa acaaatacaa aaaataaaga aaaataaaaa gataaaaaga aagaaaaaat
     4621 aaaaacagaa aaagcaaaaa ataaaaaaga ttaaaaacta aatctataaa acaagctctt
     4681 atgaaatcat taaaaaggaa aaacacaaat gaaacgcatt atcttactat ctagtttagc
     4741 tatcttaagc ctttatgcta gtgatactaa agataataaa aaaaccatac aaatgttaga
     4801 acaatctcct tataaagaag atgctaactt aaaaaactac aataacactt taaaagtaaa
     4861 agatggagtg attatcatag atcattctaa tactagtgat gataataatt caaaaaccat
     4921 caacacaaag aaaaacactc aaaaagataa taacaacact caaaaaaatc aacctaattt
     4981 gtctaatgat aatactttaa aaactaaaac cccaaattca aacactcctt ctttaaaaaa
     5041 tacttctaaa gaagaatcaa ttcataaagt tagctttagc tttcatatta ccaataaaaa
     5101 cataaacttt aaagatctag gtttagatga gcaagtttta caagaagcct taaacgatta
     5161 caaaaaagaa agtatttcag ttcaagactt acaagatata gccaatatta tttcttatta
     5221 tgttcaagtt agtggctatc ctgctgctac agcttatatc ccacaacaag aactaaaaga
     5281 tcaaattcaa atcaatatca ccttaggtgt tttaggtaaa tatgtggttc aaaacaattc
     5341 tagtgtaaga gattatgcta tagaaagtaa attacctaat cacaaaggtg aaatcatcac
     5401 tactaaatta gtagaagatg cggtttataa agtcaatgaa atgtatggca tacaaaccct
     5461 tgcttcttta aaagcaggag ataatccagg tgaaacagat gtagtgatag aaactacccc
     5521 tagtgatagc tttgtttctg tattgtttta tggggataat tacggtataa aagaatcagg
     5581 cagatatagg ggtggtgcta gtatgagttt taataacata gctcatcaag gagatagtct
     5641 taatgcttat ttgcaaagaa gcgatgaagc acaaactaac tatggtataa gctatactac
     5701 tttcttaggg aatttaaaaa tcactccaag ttattctaaa ggaaactata ctttaggggg
     5761 aatttggaga gaatttgact ttataggaac ttctgaaaat ctaggtatag atttaaaata
     5821 tcctttgtgg attacgactt ataattcttt ttatttaact tcaagctatt atcataaaaa
     5881 acttagtgat tctaaatttg atattttaac ctttgataaa agctctgata cgataagctt
     5941 tggtatagaa ggagtttata atggcattag caatgatagt ttttcttata gtgctaatgt
     6001 aagctatggt aatgttaaag atgaaggtat gactatagta ggtataggaa caagcaaagt
     6061 aggtggagta gaatttggaa aatttgctaa acttaatgtc aatcttaaca atgcttattt
     6121 ctttaatgac acctttactc atctttttag cttaaattat caacaagtta tcaatggagc
     6181 tacattagat agtagtgaaa ccatatcttt aggaggtcct tatggagtaa gggcttataa
     6241 taatggagat ggagaaggag ataatgctgt agtggctagc tttggactta gaatggccac
     6301 tcctttaaaa gatttttata tcactccttt ttatgatata ggttattctt ggtatgagaa
     6361 tgattcttat acaaactata tggatgctta tggtttacaa ctactttata ataaaacagg
     6421 gaatttttat gttaagcttg atttagctag agctttaaag aaatataaac tagatgatga
     6481 ttatagttct aaagcttatg taagctttgg gaagtatttt tgagttttag caagaagttt
     6541 ttcttgctaa gggtgtaagg ggtggatagg agaaattttg gacaaactaa tcacttggaa
     6601 tgaaaaatac agtattcatg atacaatgat tgacattcaa caccaaaaac tttttgaact
     6661 tgcaggcaag gttgaaagtg ctgtttataa atttgtaaaa cgagaagaac tcaaagaaat
     6721 tttaacagaa ctttttaact acatgaaaga acattttgac aatgaagaac aatacatgca
     6781 agaaattcat tatccttatt taaatgaaca caaaatcatg cataaaaata tcattcgcga
     6841 tatgtcttat cttatacaaa acataaaaac tactaatgat ttaaaagaaa aactttatac
     6901 tataatgtca gagtggcttt tagaacacat attacatcat gatgttatga taggcaaatg
     6961 gattaaagct cacaataaaa acactaaaga agaagaaaca aaacaagaag aattaacaga
     7021 ggattctcaa gaaaaattag aatttatata ttcttgtcct tgtaaaacca ctcatgcttt
     7081 atcatacaat gaacacttag atattttata tcacaataaa aatttaaagt gcaaaaattg
     7141 ccaacaaacc ttattttatt ttaaaaatcc aatataaagg aataaaatgc taccaaaatg
     7201 ggataaaacc tttagtgtcc ataatgccaa aatagatgaa cagcacaaaa agctttttga
     7261 acttgcaggt aaagtagagt ttatgtttga taaacctgtt tacaaggatg atgtaaaagc
     7321 tttattggct gaatttttta actacatgaa agatcatttt tatgaagaag agcgatacat
     7381 ggaactgatt aaatatccag atattgaaac acataaaaaa ttcataaaca tattatccaa
     7441 tccatgatag atcttattaa aaatataaag tccactaatg atttaaaaga gaagctttac
     7501 acagtttcta aaaaatggct tttagaacat atactctatg aagatatgaa agttgaacaa
     7561 tacagaagat cttctttagc ttctgaagat gatggggaag taagctttga agaagtcaaa
     7621 gaagaaaaag atgatgaaaa tgcagtttat ctttatacat gtgaatgcgt aggacaaatg
     7681 catgatgtac cttttggaat tcatcaaaaa attcaactta agggtgtaaa atttaaatgt
     7741 aaaaaatgta aagaagccat acagttttat aaaaaatatt cagaaaattt ctaattaact
     7801 atttatg
//
LOCUS       DAZAND010000084         7366 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.084, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000084 DAZAND010000000
VERSION     DAZAND010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7366
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.084"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            83..1573
                     /locus_tag="ACHDOB_001441"
     CDS             83..1573
                     /locus_tag="ACHDOB_001441"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFN3326358.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLSVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALIQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKLSDKILNDSEFAYFLMNVFNTDQNSSYVIINDNKAILYKINKQKLD
                     MNSDKFEQYKTMLEQNLRNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            1570..2958
                     /gene="ftsA"
                     /locus_tag="ACHDOB_001442"
     CDS             1570..2958
                     /gene="ftsA"
                     /locus_tag="ACHDOB_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HFN3326359.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDKVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDAESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            2974..4086
                     /gene="ftsZ"
                     /locus_tag="ACHDOB_001443"
     CDS             2974..4086
                     /gene="ftsZ"
                     /locus_tag="ACHDOB_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HFN3326360.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            4241..5053
                     /locus_tag="ACHDOB_001444"
     CDS             4241..5053
                     /locus_tag="ACHDOB_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HFN3326361.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLENSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            5082..5873
                     /gene="flgG"
                     /locus_tag="ACHDOB_001445"
     CDS             5082..5873
                     /gene="flgG"
                     /locus_tag="ACHDOB_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009426 - bacterial-type flagellum basal
                     body, distal rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HFN3326362.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(5939..>7366)
                     /gene="glnA"
                     /locus_tag="ACHDOB_001446"
     CDS             complement(5939..>7366)
                     /gene="glnA"
                     /locus_tag="ACHDOB_001446"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HFN3326363.1"
                     /translation="GKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAIN
                     EETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYKG
                     QMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTEE
                     GEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHHE
                     VAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHVH
                     MSLWKDGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFEA
                     PCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNKT
                     IPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQH
                     LKFETQVWPVEARPTAYEFKTCYSC"
BASE COUNT         2633 a         1009 c         1361 g         2363 t
ORIGIN      
        1 ttttggtaaa aattttataa ttaaactcca cttaaacact tctacgatac aatatctagt
       61 ttaaatttaa tcaaggaatg atatgcttac ttggatgcaa catcacaaaa aatatcttgt
      121 tgttactata tgggttagta ctatagcttt tgttggcgct ggctttttag gttggggtgc
      181 ttatgatttt aatctcaata gaagttcgag tgttgcaacc gtaggaaatg aaaagatagg
      241 ttttagcgaa tttgatacta gatatagaca aattttaagt tattataatc aaattagcaa
      301 tggtgcttta actccagaaa atgctgagca actaggcatt aaaaatatag ctttaagctc
      361 ccttgttgaa gataagcttt tgttaaattt tgccaaagat ttgggtattg gcgtaaacga
      421 gaatgaaatt ttacaaaaac ttgcaaatac tagagaattt caagatccta caggggattt
      481 taacaaaaca atttattatg aacttttaaa tgccaataat ttaactccaa aagattatga
      541 aacacaactt gcaaatgaag taattaccga taaacttaat caaattttta atattcctag
      601 caaagatgaa gaattaaaaa tgttagcttc tagttatttc atgcaagatg ctttaagtat
      661 tgcaaaaatt gattatgaca aaaaaaatat taagattaat gaagaggatt taaaaaagct
      721 ttggaatgaa cataaagaag attataaaac taaaaaaata tatgaaattt caacttattt
      781 tttgtcagtt agcaatgaga aaattgacga caaagaatta gaaaaatttt ataatcaaga
      841 tgaaaataaa ctaaaatata aagattttgc aggtaaagtg atggattttc agtctgctaa
      901 aaatgaagtt gctaaagatt acgccttaat acaactaaag aatgtggcta atgctaaatt
      961 tttagattta aaaaacggga aagataattt tcaaaaagat caaaatatta gtgaatctga
     1021 tgtttattat ccaattgatc ttttgaataa agctaaaaat ggagatgttt tacgaccagc
     1081 accttataat aacggatata tcatagttaa actaaataaa gtagatccta taagaaataa
     1141 aacttttgaa gaagctagag aagaagtttt acctatgtat ttaagcgaac aagctagaaa
     1201 aaatttagaa gaaaaagcta aaaatagttt agtaaatttt aaaggcgatg atataggctt
     1261 tgtaagtcga gatagttctc gcgagagtgt aaagcttagt gataagatat taaatgattc
     1321 tgaatttgct tattttttga tgaatgtatt taataccgat caaaatagtt cttatgtgat
     1381 cattaatgac aataaagcaa tattatataa aataaataaa caaaaattag atatgaactc
     1441 cgataaattt gaacaataca aaactatgct tgaacaaaat ttgcgaaatt taaaagcaaa
     1501 tgagcttaag caagaacttg ttgatgaact taaaaagata tatccgataa aaatttatta
     1561 taaagggaat tgattttgaa tatattagga attgacttag gctcaaccca gacttgtgcc
     1621 attattgctc aaaaagatga agatggatta aaaattattg gtttttccaa gtcgaaaacc
     1681 aacggggtta aaaaaggtgc cattaccaat atagagcttg cttctaaatc tattgaagaa
     1741 gctgttagaa gtgctgagat gatgagcgga gttcattatg ataaggttgt ggtgtctata
     1801 tcaggtgctt atactaaaag cgttgatagc ataggtgttg ttaatattcc aaatcatgaa
     1861 ataggcatta aagaaattca tcgtgctgta agtacagcta agcatactgc caatctacca
     1921 agtggttatg aaattatcca tgttttgcct tataatttta aggttaatga tcttgaacat
     1981 gttgatgatc ctttgggaat gagtggtaat cgtttggaag tttcaaccca tatagtgatt
     2041 tcacaagaat ctcatattaa aaatcttaag aaagcagttg aattagctga tttaagagtg
     2101 gataatatag ttctttcagg atatgcttca gctatagctt gtttagatga tagcgaaaag
     2161 gaattaggtg ctgttttgat tgatatgggt ggagcgattt gtgatatggt tgttcatact
     2221 ggaaattcaa ttagatataa tgattgtttg caaattggct cgattaatat tacccaagat
     2281 ttatcaatgg cattgcatac acctttaaaa gaagcagaaa aaatcaagct taattatgca
     2341 gctctttcac aacagcctaa tacccttata caaattcctt caatgggtga tgaaagaaag
     2401 gttaatgaag tttctttgga tattatttca aacgtaattt atgcaagagc ggaagaaact
     2461 ttgatgattt tggcaaaaat cttaagtgat aatcgttatg ccaatgctat aggcggtgga
     2521 gttgttttaa caggtggaat gactaagtta gcaggtattg atgagctagc tcctgcaaca
     2581 tttgataatc gctcagttag actagctact gcaagaaaag atttgattac tggttttagt
     2641 gaaattttta atgatcctga aaatacttgt gctataggac tttgtttata tggagcgggg
     2701 tattttacgc cttatgaact tgattctaat gaaaaattaa gatataaagg ggaaattgaa
     2761 aattttaatc gtcaaattaa acaagatatt gttttgcaaa aagatgcaga aagtgaaata
     2821 aaatctgatt tttttgatga aaatttgcaa gaaaatgata caattgcaat acaagaacaa
     2881 ttagatttta aagagccaaa agaaaaaaaa cctagcgttt tttcaaatat ctggcataaa
     2941 attatgaatc aattttaaca aggagaaatt tttatgagtg aatttttagt agaagaaatg
     3001 caacataata aaggtgcaaa aattaaggtt ataggctgcg gtggcggtgg cggtaatatg
     3061 atcaaccata tggttaaaat gggattaaat gatcttgatt taattgcagc aaatactgat
     3121 gcacaagcta tttcaatttc attagcaaaa actaaaattc aacttggcga gaaaaaaact
     3181 aaaggtttag gcgctggtat gcttcctgag gtaggtgcag aaagtgctag agaaagtttt
     3241 gaagaaataa aagcaagtct tagtcaaagt gatattgtat ttattgcttc aggttttggt
     3301 ggaggtactg gaacgggtgc cactccagtt attgcacaag cagctaaaga gattggagct
     3361 ttaactgttt ctgttgtaac tatgcctttt gcattcgaag gaaaacaaag aaaaaaactt
     3421 gctgaaagcg gtctccttga gcttaaaaaa gaaagtgatt ctattcttgt aattcaaaat
     3481 gaaaaattat tgagcattat tgataaaaaa gcaggcatta aagatgcttt tagattggtt
     3541 gatgatattt tagctcgtgc tgtaaaaggt atggtgtcta tcttgcttga taatggagat
     3601 attaatgttg actttgcaga tgtaagaacc atcatgagtc atcgcggact cgcacttatg
     3661 ggcgttggta gtgctagtgg tgaaaatgct atagaagagg ctctttcaaa cgctatagaa
     3721 tctcctttgc ttgatggaat ggatattaaa ggtgccaagg gagttatttt acattttaaa
     3781 acaagttcta attgctcttt gtttgaaatt tcagcagcag caaatagtat acaagaaatt
     3841 gttgatgaaa atgctaagat tatttttggt tctactacag atgatagcat ggaagataga
     3901 gttgaagtga ctattattgc gacagggttt gaagacaaag atacagtagc taaaaaatct
     3961 accgaagaag ctcaagcttc taagaaaaat ccttatttaa gtcttaaaaa ggtaagcggt
     4021 ggttacgatg aagagataat ggcgcaaatt gaaacaccga ctttcttgcg tcgtcaaatg
     4081 gattaaaatt gattttaaag caagattgag tcaaatcttg ctttttatag tttaaaattc
     4141 tctcctaata atctttcaaa tatttatttt tctttgtttt taaaagttgg aacactcttt
     4201 gcttttatag ctataaaatc ttaattttat aggtgaaaat atgcaaaatg gatattatca
     4261 agcaactggc ggaatggtaa ctcagtttaa taaacttgat gtgattacta ataatcttgc
     4321 caatattaat acaagtggat acaaaagaga tgatgtggtt attgcagatt ttaaaaggat
     4381 ttttaaagaa actcaggatg agttgcctat agaaaatcac acaagagatg catctcgttt
     4441 tgtaaatact acaatagatg gaatcccgca agtttctcaa gaatatacgg attttagtct
     4501 aggttcttta aaggccacaa acaatccttt ggatttggca atgactagag aagatgcttt
     4561 ttatttggtt caaaccaaag atggagaagt aagattaacc aaagatggaa attttcaact
     4621 tgatgatgag ggttatttgg taaataagca aggatacaag gtattaagta gtgattattt
     4681 taataatcct cagaatgctg gcatacgcat tcctaatggt gctgttcaaa ttagcgttga
     4741 taaaaacgga agcattgagg ttgatggagc tcaaaatgca agattatttg tagcacaagt
     4801 agatgatata agagctttgc aaaaagatgg ggataatgtc tataaaatag atgatctaac
     4861 ccgcattaga gatttggaaa actccaatgc tattcgccaa ggtttttctc agggatcaaa
     4921 tgttaatcca gttactgaaa tggtaggact gattgaagca aacagaatgg tagaaatgta
     4981 tcaaaaagtt atgacagctc atatggatga cttaaatcaa gaagctatca ataagcttgc
     5041 agctgttaaa taatttaaaa taaaataaaa aaggattaaa aatgatgaga tcacttcata
     5101 ctgctgctac gggaatggta gcgcagcaaa cacaaattga tgttacttca aataacatcg
     5161 ccaatgttaa tacagcaggt tttaagaaaa gtcgcgcaga atttgctgat cttatgtatc
     5221 aagttatgaa gtatgcagga acttcaactt cagctactac tctttctcct tcgggtatag
     5281 aagtgggtgt gggtgtgcgt ccaacagcgg taactaaagt ttttactgaa ggaaatttaa
     5341 aatcaacaag tactgatggt cttgatatgg ctattgcagg taatggtttt tttcaaatac
     5401 aacttcctga tggcactata ggatatacta gaaatgggca atttacaaaa gataatgaag
     5461 gtaatattgt aaattcagat ggttatagac ttttacctga aatgacaata cctgaaggcg
     5521 caacagcaat taatgttgct acagatggaa ccgtttctgt aatgctacca ggggagcaac
     5581 aagaaactca aattggccaa gtggagctag ttcagtttat aaatccagcg ggtcttcatt
     5641 ctatgggtga taatctttat cttgaaacag gagcaagtgg tgcacctgtt gcgggtatag
     5701 caggacaaga tggacttgga acaataagac atggatttat agaacttagt aatgttcagc
     5761 ttgttgaaga aatgacagat cttatcacag gacaaagggc ttatgaagcg ggttctaagg
     5821 caattacaac aagtgatgat atgctaggaa ttgtaaatca gcttaagcga tagttgatat
     5881 aaaataaata atttttaatt cttttttatt taatggcgtg ttaaacgcca ttaaattttt
     5941 agcaagagta gcaagtttta aattcataag cagttggacg agcttctact ggccaaactt
     6001 gtgtttcaaa ttttaaatgc tgatagtcat cgataaaaat atcgctcatt acaggtttta
     6061 aataagaatt atgtcggatt aaagcttcta aacttcctct tagagtatgt ggtaattgct
     6121 ctatcccttt ttcacgtatt tcatccaaag taagatcaaa taaattttca tccataggac
     6181 ccacaggaat ggttttattt ttgattccat caagacctgc cattaaaaga ctaacaaaag
     6241 ctaaataagg attagcagtg ctatcaggga agcgaatttc tatacgagct gaatttttac
     6301 ctatgccata aggaacgcga caacttgctg atctgttttg acaagaataa gttaaaatac
     6361 aaggagcttc aaaaccagga actattcttt tgtaagaatt ggaacttgga tttgtaaaag
     6421 ctgcgacact tctagcattt tttaaaattc cacctatata atttatagca gtttgactaa
     6481 gtccactgta tccatcttta tcgtaaaata aatttacccc atctttccat aagctcatat
     6541 gaacatgcat accattgcca ttatctccgt ataaaggttt tggcataaaa gtggcagttt
     6601 tgccatttaa atgagctacc atttttacaa catatttata aatttgaaca ttgtcagctg
     6661 cttctacaag cgtgccaaaa tttactccta tttcagcttg tccttgtgca acttcatgat
     6721 gatgaacaaa agttttaaga cctacttttt caagagtttg aaccatttca gaacgaatat
     6781 ctactaaaga atcaattggc tgaactggaa aatatccacc tttgtttctt ggcctgtgtc
     6841 cagtattgta gctatcggta aattctctat catcattcca ctctccttct tcggtatcaa
     6901 cttcatactt agaacaatga gtagtatcaa ctatttttac actatcaaaa acaaagaatt
     6961 cattttctgg tccaaagtaa gcagtatcag caatgccact atttttaagg tgttccattg
     7021 ctttttttgc tatgcttctt ggacattttt catacatttg tcctttgtaa atatcataca
     7081 catcacaaaa tactatgata gtaggatcag ctgtaaaagg atctaaaaaa gcactttgtg
     7141 catcaggttt taaaatcata tctgattttt ctataggttg ccatccatgg attgagcttc
     7201 catcaaatgg aatgccagtt tgaaatgttt cttcattgat tgcatggaga ttataggtaa
     7261 tatgatgcca agttcctatc atatctgtaa aacgaaaatc aacaaaaagc acttcatttt
     7321 gtttgcaaaa tttgaaaaaa tcatctatat tattaacaaa ttttcc
//
LOCUS       DAZAND010000085         7333 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.085, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000085 DAZAND010000000
VERSION     DAZAND010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7333
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.085"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            9..737
                     /gene="pebC"
                     /locus_tag="ACHDOB_001447"
     CDS             9..737
                     /gene="pebC"
                     /locus_tag="ACHDOB_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFN3326364.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            759..1538
                     /gene="peb1A"
                     /locus_tag="ACHDOB_001448"
     CDS             759..1538
                     /gene="peb1A"
                     /locus_tag="ACHDOB_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HFN3326365.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            1540..2292
                     /locus_tag="ACHDOB_001449"
     CDS             1540..2292
                     /locus_tag="ACHDOB_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN3326366.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            2303..2962
                     /locus_tag="ACHDOB_001450"
     CDS             2303..2962
                     /locus_tag="ACHDOB_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN3326367.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGIVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3070..3999
                     /gene="prsA"
                     /locus_tag="ACHDOB_001451"
     CDS             3070..3999
                     /gene="prsA"
                     /locus_tag="ACHDOB_001451"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HFN3326368.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDSGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQASGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAHERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVAPVFAEVIRRVYHNESVNSLFI"
     gene            4165..6276
                     /gene="cstA"
                     /locus_tag="ACHDOB_001452"
     CDS             4165..6276
                     /gene="cstA"
                     /locus_tag="ACHDOB_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HFN3326369.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHALAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKIANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIKKEISIATQSKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            6257..6454
                     /gene="kcuS"
                     /locus_tag="ACHDOB_001453"
     CDS             6257..6454
                     /gene="kcuS"
                     /locus_tag="ACHDOB_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HFN3326370.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     REEFFKECLDKKYNSGGLNKC"
     gene            complement(6494..6907)
                     /locus_tag="ACHDOB_001454"
     CDS             complement(6494..6907)
                     /locus_tag="ACHDOB_001454"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - fatty acyl-CoA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HFN3326371.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            6969..>7333
                     /locus_tag="ACHDOB_001455"
     CDS             6969..>7333
                     /locus_tag="ACHDOB_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326372.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLVDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGV"
BASE COUNT         2394 a          945 c         1401 g         2593 t
ORIGIN      
        1 gaaaaaactt gattgaatta aaaaatgtaa acaaatacta cggaactcat catgttctaa
       61 agaatattaa tctttctgtt aaagaaggtg agaagcttgt tattataggt ccaagtggaa
      121 gtggaaaaag tacaactatc cgttgcatga atgggcttga agaagttagt tcaggagagg
      181 tcgtagttaa caatcttgtt ttaaatcata aaaataaaat tgaaatttgc cgaaaatatt
      241 gtgcaatggt ttttcagcat tttaatttat atccacatat gacggttttg caaaatttga
      301 ccttagctcc aatgaaactt caaaaaaaat ctaaaaaaga agctgaagaa acagctttta
      361 agtatttaaa agttgtaggt ttgctggata aagcaaatgt ttatccagca accctttcag
      421 gtggacaaca acaacgcgtt gctatagcaa gatcactttg tactaaaaaa ccctatattt
      481 tatttgatga acctacttca gcccttgatc cagaaaccat acaagaggtt ttagatgtaa
      541 tgaaagaaat ttcacatcaa agcaatacta ccatggtggt tgttacacac gaaatgggtt
      601 ttgcaaaaga agtagcagat aggattattt ttatggaaga tggtgctatt gtggaagaaa
      661 atattcctag tgaatttttc tcaaatccaa aaactgaaag agcgcgactc tttttaggga
      721 aaattcttaa aaattaacca aaattgaaag gagaaaaaat ggtttttaga aaatctttgt
      781 taaagttggc agtttttgct ctaggtgctt gtgttgcatt tagcaatgct aatgcagcag
      841 aaggtaaact tgagtctatt aaatctaaag gacaattaat agttggtgtt aaaaatgatg
      901 ttccgcatta tgctttactt gatcaagcaa caggtgaaat taaaggtttc gaagtagatg
      961 ttgccaaatt gctagctaaa agtatattgg gtgatgataa aaaaataaaa ctagttgcag
     1021 ttaatgctaa aacaagaggc cctttgcttg ataatggtag tgtagatgcg gtgatagcaa
     1081 cttttactat tactccagag agaaaaagaa tttataattt ctcagagcct tattatcaag
     1141 atgctatagg gcttttggtt ttaaaagaaa aaaaatataa atctttagct gatatgaaag
     1201 gtgcaaatat tggagtggct caagctgcaa ctacaaaaaa agctataggt gaagctgcta
     1261 aaaaaattgg cattgatgtt aaatttagtg aatttcctga ttatccaagt ataaaagctg
     1321 ctttagatgc taaaagagtt gatgcgtttt ctgtagacaa atcaatattg ttaggttatg
     1381 tggatgataa aagtgaaatt ttgccagata gttttgaacc acaaagttat ggtattgtaa
     1441 ccaaaaaaga tgatccagct tttgcaaaat atgttgatga ttttgtaaaa gaacataaaa
     1501 atgaaattga tgctttagcg aaaaaatggg gtttataata tgaatgaaag tgtaggtttt
     1561 gttgaacatt taagacaaat tcttacttct tggggtttat atgatgaaaa tagtataagc
     1621 ccttttgcgg tatggaaatt tttagatgct ttggataata aagatgcttt tattaatggt
     1681 tttatttata ctttagaagt aagcattctt gctttgctta tagctacaat ttttggaact
     1741 ataggtggag ttatggctac aagtagattt aaaattatca gagcctacac tagaatttac
     1801 gtagagcttt ttcaaaatgt tcctttggta atacaaattt tctttttatt ttatgccttg
     1861 cctgttttag gtataaggct tgatatattt actattggtg tattgggtgt tggggcttat
     1921 cacggagctt atgtaagcga ggtggttaga agtggaattt tggctgtgcc aagaggtcag
     1981 tttgaagctt ctgcttctca agggtttact tatattcaac aaatgcgtta tattatagta
     2041 cctcaaacta ttagaattat tttaccaccg atgacaaatc aaatggtaaa tttaatcaaa
     2101 aatacctctg tattgcttat tgtaggtgga gctgagttaa tgcattctgc tgatagttat
     2161 gcagctgatt atggaaatta tgcgccagct tatatatttg cagcggtttt atattttata
     2221 atttgctatc ctttggctta ttttgcaaag gcttatgaaa ataaattaaa aaaagcacat
     2281 ttaacgagat aaagggttgt taatggaaaa tgtttttaat gcacaaaata ttgaattttt
     2341 aatgcaaggt ttatttctga cattaaaaat agccttggca acttgtatta tttcgattgt
     2401 ttttggaact tttttagcca taactaaaaa ttatggagat agattaagta aatttttagc
     2461 agcttgctat atagatattt ttagaaatac tcctttatta ctatggatgc tcgcagcttg
     2521 ttttgttttg cctgtatttt ttggacaatt tcctcaagct ttttggggta ctataggatt
     2581 ttcactttac acgagttcgg ttatggctga aattattaga ggcggattaa attctatacc
     2641 aaaaggtcag tttgaagcag cttattctca aggttttggt aaatttttta ctctttttta
     2701 tattatttta ccacaaactt ttagaaaaat aatacctgca ttattatctc aaattgtaac
     2761 cactgtaaag gatacagctt atttagcagg tctaggtata gctgaactta cttataattc
     2821 taaaactata ttggctaaac taacaagttt tgaagaaatt ttagcgatga taggtattgt
     2881 tgcgggaatt tattttataa tatgtttttc actttctatg ttggtaagat attatgctaa
     2941 aaagacagct tatatttctt aaaaaagctt atatttttat ataagctttt taaatttaca
     3001 gcagttttta acattttttt tattaaaatc ttttgtataa attcataatt ttattgatta
     3061 aggtttttta tgcgaggtta taaaattttt tcaggctcag ctaatgtgga atttgcaaga
     3121 caagtttcta agtatctttc cctaccttta agcgattctg gagtaaaacg ttttagtgat
     3181 ggagagatta gtgttcaaat tgatgagagt gtacgcggaa aggatgtttt tattattcaa
     3241 agtacttgtg ctcctacaaa cgataattta atggaacttt taattcttac agatgcttta
     3301 cgtcgctcaa gtgcaaattc aattacggct attataccat attttggcta tgcgagacaa
     3361 gatagaaaag caaatcctag agtaccaatt actgctaaac ttgtggctaa tttgattcaa
     3421 gcatctggga ttgatcgtgt agctacgata gatttgcatg caggccaaat tcagggtttt
     3481 tttgatattc cagtagataa tctttatgga agtatagttt ttaatgatta tattaaagcc
     3541 aaacatttta aaaatgctat tataggaagt ccggatatag gtggtgtcgc aagagctagg
     3601 agtgttgcaa agcatttagg acttgatata gttatagttg ataagcgtcg cgaaaaagcc
     3661 aatgaaagtg aagtaatgaa tattattgga gatgtaaaag ataaagaagt tatcttagtg
     3721 gatgatatta ttgatactgc tggcactata gttaaagctg cagaagcttt aaaagaaaaa
     3781 ggtgcaaaat ctgttatggc ttgctgtact catgcagttt taagtggaaa agcccacgag
     3841 agaatagcaa gcggagtttt agatgagctt gtggtaacag atactatacc tttaaaagag
     3901 caattaccaa atattaaagt attaagcgtt gcacctgttt ttgctgaagt aatacgtcgt
     3961 gtttatcata acgaaagtgt aaattctctt tttatttaga ttaaaaaagc ttaaagatta
     4021 tttttaagct tttcgttttt atgctactta aagaaacaaa aaacatatat ttttttaaaa
     4081 tgtgaaaaaa ctaaacatct ttctacataa tttaatttat aaatctgcta ttctttgaaa
     4141 atattttatt ttcttaggag aaatatgact cagttaagta ctaaaatttt atggttattt
     4201 gttgcaactt taggcgctat ttgttttggt tatttagctt tacaaaatgg cgaaagtgta
     4261 tcagcgattt atttggtggt tgctgctgta tgtatttata tgataggata tagattttat
     4321 gggcgttttg tagcttataa ggttttagaa cttgataaaa atcgtgcaac accagcactt
     4381 gtagaaaatg atggacgtga ttttgtgcct acaaataaag ctgtattatt tggacatcat
     4441 tttgctgcta ttgcaggagc aggtccattg gtaggaccta tcttggctgc tcaaatggga
     4501 tatttgcctt ctatgctttg gattttagta ggaggagttt tagcaggtgc tgtacatgat
     4561 tttgttgttc tttttatatc tactcgcaga aaaggtagaa gtcttggcga gatgattaag
     4621 gatgagatgg gtaaatttac aggtggagtt gctatggtgg cgatttttgg cattatgctt
     4681 attattattg ccattttagc tatggtggtt gtaaaagctt tagcagaatc tccatggggt
     4741 ttatttacta tcgcaatgac tattcctata gcaatattta tgggaattta tatgcgtttt
     4801 atccgtccag gtagagtagg ggaggcttct ataataggtt ttgtgctttt aattttggct
     4861 attcattatg gtagcgttat agctgctgat ccttattggg ctaaaatatt tactttagaa
     4921 gctccaactt tggcaattgt tatgatggct tatggtttta ttgcttctgt tttacctgtg
     4981 tggtttttac ttgctccaag agattatctt tcaacttttt tgaaaatcgg tgttattgtg
     5041 gtaatggctg tagctattgt tttggttgct cctgatttac aaatgccaaa agcaaatact
     5101 cagtattttg atggaacagg tccagtattt gcaggtggag tgtttccatt tttatttatt
     5161 accattgctt gtggtgcgat cagtggtttt catgctttga tttctagtgg aactactcct
     5221 aaaatgcttg aaaacgaaac tcatgctttg gctgttggat atggctctat gcttgctgag
     5281 agtgctgtgg cgattatggc tttaatttgt gcttgtattt tacatccggg tctttatttt
     5341 gctataaatt caagctctgc tttgatagga acagatgttg taaatgtagc acaaaccatt
     5401 tcaagttggg gatttagtat tactcctgaa gaaattacta ctttaaccac aaatatagga
     5461 gagcatacta tactttcaag gacaggtgga gctccaactt ttgctatagg tgtagctttg
     5521 atcttgcatg aactttttgg cggcgtggat ttgatggctt tttggtatca ttttgctata
     5581 ttgtttgaag ctttatttat tttaacagcg gtggatgctg ggacaagggc ttgtcgtttt
     5641 atggtgcaag atatattggg taatgtttat aaacctttag gagatattca taattatcca
     5701 gctggacttt tggctacggc tttaagtgtt gcaggttggg gatattttct ttatcaaggt
     5761 gccattgatc ctaagggagg aatttatacg ctttggcctc tttttggcgt gagtaatcaa
     5821 atgcttgcgg gtatggcttt acttcttgct acaactatac ttgtaaaaat gggcaaggca
     5881 agatatactt gggttacttt agtacctgcg gtatttgtct tagtggcaac tctgtatgga
     5941 ggaattcaaa aaattatgcc ttatgaggaa ggcaataaaa tagcaaatgc ggtaagtcat
     6001 gtagccgccg ttagcataca aagtcaaaaa attaaagatt tagaatttaa attaaataat
     6061 actaaagatg aaaaagaaat ttctacaatt aaaaaagaaa tttcaatagc cactcaaagt
     6121 aaagttggaa atttgcttaa tgcaattctt tgtgtgttct ttatgatagc taccttgctt
     6181 gttataattt cttgcatagg aatttgttta ggtaaaatta aaattcctct taaagaaact
     6241 aagtatatta agattgatga atttcaaaaa atttaagtat tattatgaaa aagccgaaag
     6301 gttttttcat cccttggtgg gactttctag ttatgataag tatttagaac acatgaaaca
     6361 aaaacatcca ggaaaaattc caaaaaccag agaggaattt ttcaaagaat gtctagataa
     6421 aaaatacaat agtggcggtt taaataaatg ctgataagct taaaggataa agttttatca
     6481 tacaaaataa gctttaagca tttaaaaagc catgaattct tttaagttct tcactaatag
     6541 gctttttctt tccatctctt gtaacactta cataagttac taaagccgaa gttacattaa
     6601 tgcaagaagt acaaccttga gaatccactc tttgagctgt gacttctact tcaacgctga
     6661 ttgaagtgtt gcccacattt acaactttag agtaacaaga aattatatcg cctataaaaa
     6721 caggttcttt aaaaactact ttatccatag agatggttac aacgcgttca ggagaaagtt
     6781 ctcttgctgc gatagctcct gctaaatcga tttgtgaaag tatccatccg ccaaaaatat
     6841 ttcccgctgg atttgtgtca cttggcatag ctacaatttt taattttggt tctcccatat
     6901 ctctcatttt tactccttat tttaaaaaat gaattataat taaaaaagtt aaaaaggaga
     6961 ataaaagtat gaataatttt aaagaaatag ctaaattggt tagaaaatac aaagaaagaa
     7021 ataatgcgtt atatgagttt ttagacaaag aagatgtggg cgagtatttt agatctttga
     7081 tttctttaag cgaattaaaa caagataaaa caactatgct agccatactt aggcgtttgg
     7141 ttgatttaaa ggaagaaaat ttagttcaag agtggaaaaa aaacaatttt aaggaagata
     7201 agattataga gctaaaacat aagttctatg aagaggttag aaagttttat gaaaaagaac
     7261 atcaaaattt aattaatgaa ataaaagaga aaaaactttt aaataatttt tatcagtctt
     7321 taatacaagg agt
//
LOCUS       DAZAND010000086         7027 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.086, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000086 DAZAND010000000
VERSION     DAZAND010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7027
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.086"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..184
                     /locus_tag="ACHDOB_001456"
     CDS             <1..184
                     /locus_tag="ACHDOB_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326373.1"
                     /translation="EFLNDKLKHYEKNQKSKLESLEKVLQSLKNQDANILNSFEENLE
                     KIEKLKQLEMGLLNAD"
     gene            174..2003
                     /locus_tag="ACHDOB_001457"
     CDS             174..2003
                     /locus_tag="ACHDOB_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HFN3326374.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGCDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSTEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     ALKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQNYEKHLLLAYENFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFEALLINKPILTKI
                     AKNFLEQSQNLIQEKNKFLDLKKAELQKRRAQILNVRESIKED"
     gene            2003..2707
                     /locus_tag="ACHDOB_001458"
     CDS             2003..2707
                     /locus_tag="ACHDOB_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFN3326375.1"
                     /translation="MRIFLALFLFFNSLFALSELEEGLKLYEANKFDKAYEIFKNLCE
                     KDISKACFSLAFMHESAKGVSKDLNQAYKFYDKACKLGLANACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            2843..3571
                     /locus_tag="ACHDOB_001459"
     CDS             2843..3571
                     /locus_tag="ACHDOB_001459"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HFN3326376.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKVRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFMEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMSLADMES"
     gene            3573..5294
                     /locus_tag="ACHDOB_001460"
     CDS             3573..5294
                     /locus_tag="ACHDOB_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HFN3326377.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNFIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVGGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            5465..5551
                     /locus_tag="ACHDOB_001461"
                     /pseudo
     CDS             5465..5551
                     /locus_tag="ACHDOB_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5583..5789
                     /locus_tag="ACHDOB_001462"
                     /pseudo
     CDS             5583..5789
                     /locus_tag="ACHDOB_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866324.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(5852..6556)
                     /locus_tag="ACHDOB_001463"
     CDS             complement(5852..6556)
                     /locus_tag="ACHDOB_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative metalloprotease CJM1_0395 family
                     protein"
                     /protein_id="HFN3326378.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFNIAS"
     gene            6663..7025
                     /locus_tag="ACHDOB_001464"
     CDS             6663..7025
                     /locus_tag="ACHDOB_001464"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HFN3326379.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILLCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQREAIK
                     LDLPKFEEFVKFLNSKIF"
BASE COUNT         2483 a          877 c         1276 g         2391 t
ORIGIN      
        1 tgagttttta aatgataaat taaaacatta tgaaaaaaat caaaaatcaa aattagaaag
       61 tcttgaaaaa gttttacaga gtctgaaaaa tcaagatgct aatattttaa attcttttga
      121 agaaaattta gaaaaaattg aaaaattaaa acaacttgaa atggggcttt taaatgcaga
      181 ttaatctttt aaatgatttt ataaaagcct atgaaaatac ctatagtgtg agttttgatg
      241 atagttttaa agggcgtatt caagagcttt gtaaggaact taacgagcct tttatgcacg
      301 caagttatgc tttagaaaat gaattaaaag agcttgtgtt ttctttggat aagaatgtta
      361 atatcgctat tatagggcag ttttcaagtg gtaaatcaag tttgctaaat ttgatattag
      421 ggtgtgattg tttgcctacg ggtgttgttc ctgttacttt taaacctact tttttacgct
      481 atgcaaaaga atatttttta agagtagaat ttgaagatgg aagtgatatt atcacaaata
      541 tagaaaaatt agccttttat acggatcaaa gaaatgaagt aaaacaagca aaaagtttgc
      601 atatttttgc acctattcct ttacttgaaa aaattactct tgtagatact ccaggtttaa
      661 atgcaaatga aaatgatact ttaacaactc ttgatgagct taaaaatatt catggggcga
      721 tttggttaag tttgattgat aatgcaggta aaaaaagtga agaagatgcc ataaaagcaa
      781 atttggaact tttaggagaa aatagcattt gtgtattaaa tcaaaaagat aaattaagca
      841 cagaagaact agataatgtt ttaaattatg caaaaagtgt gtttttaaaa tattttaatg
      901 agcttattgc tatttcttgc aaagaagcta aagatgagca aagctatgaa aaatctaatt
      961 ttcaatcttt gcttgatttt ttaactcagc tagatacaac agctttaaaa gaaaaatttg
     1021 ttaaaagaaa aattttaaat ttatgcgaaa ttttagaaga tgaaaatcaa ctttttgtag
     1081 gtatttttga tcgtttatta aatcaatttc aaaattatga aaagcattta cttttagcgt
     1141 atgaaaattt tttaaaagag attgaaattt taaatcatca gattttagaa cagcttaaaa
     1201 gcattagcga aagaatttct agtgaaattt ttgcaagtgt taaggaaaaa gatgcttatt
     1261 tttacaaaga aagcaaagga tttttaaaga aagatttata tacaagatat gattataaag
     1321 cgccttatat ttcaagtgac gatgcttttt tggcgatgtt ttataatagt gatgtgatga
     1381 gtaaagagtt taaaaaaatc aaaaatgaac tttataaatc ttttgaagaa attaagatga
     1441 aattaaaaga ttttataaac atacttgaaa gagaaatttt gctttttaaa gcagaatttt
     1501 caaacataca aaaagatcac attttccaaa gtgataaaaa ttttagcgaa ttaagggctt
     1561 tttgcaatgc aagcgatgag tactttttga aagattttaa ggagctttta tttaaaagta
     1621 ttttagagct tgatttattt tttgaaaaat taaatcttaa agcttttaca aattatgaaa
     1681 atgctacgaa actaagcctt gcatttttta gtcgtaaaat caatgaaagc cgtgttcttt
     1741 atgagcttga tagttctgaa tttgtacttt tttatcccaa aaaaagtgaa atttatgaaa
     1801 gagttttaaa tgaattaaat gtttatgagt ttgaagcttt gcttattaat aagcctattt
     1861 tgacaaaaat tgcaaaaaat ttcttagaac aaagtcaaaa tttaatccaa gaaaaaaata
     1921 aatttttaga tcttaaaaaa gcagaacttc aaaaaagaag agcgcagatt ttaaatgtta
     1981 gagaaagtat aaaggaagat taatgagaat atttttagct ttatttttat tttttaattc
     2041 attatttgca ttaagtgaat tagaagaggg tttaaaactt tacgaggcaa ataaatttga
     2101 taaagcttat gaaattttta agaatctttg tgaaaaagat atttctaaag cttgtttttc
     2161 tttagctttt atgcatgaaa gtgctaaggg tgtgagtaag gatttaaatc aagcttataa
     2221 attttatgat aaagcttgta aattgggttt agcaaatgcg tgttctaata tggctttgct
     2281 tttgcaaaat caaggttata aaaatgaagc tcttttggct tttaataaag cttgcacttt
     2341 aggagaatcg ttaagttgta ataatatagc tttattttat gaaaaagaaa aagatggaca
     2401 aatggcctca agtttttata aaagatcttg tgacttaaaa aatgcaagag cttgttatca
     2461 gttaggatct ttatatgata aaggagaact tgttaaagca agtgtaaaat ctgctcttgc
     2521 tttttattct aaatcttgca ctttaggttt tggtgaggct tgttatttgc taggacgcta
     2581 taatcaacta gaaaaacaag atctaacaaa ggcaaaaaga tattttggaa tggcttgcga
     2641 tcaaaaacat caagaagctt gcgcagctta taaagaactt aattctaaag atatagagct
     2701 ttattaaaag ttctattttc attactttca aagatatact taaataaaat taagaataac
     2761 acaaaattta tcgcttttta aagttaaatt tatattaata ggactaatat agtcttgttt
     2821 aaattattat caaggagaag taatgcaaga caatattatt gatcgcagaa gcttttttaa
     2881 actagggctt ctaggtggtt ctgtagtagc agctagcact ataggtggcg gtgctgtttt
     2941 aaaggcagca gaacttacgc attcgcatca agcttcacaa gggaaatcaa ataaagttag
     3001 aggtagaatg ttttttcaaa ctcaaactga atttgatacc ttaagtgcag cctgtgaaag
     3061 aatttatcct aaagatgagc aaggagaagg agctataggt ttaggcgtgc cttattttat
     3121 cgataatcag ctagctagtg cttatggtta taatgataga gaatatatgc aagggccttt
     3181 catggagggc aaagccgaac aaggctatca aactcctatg caacgcaaag atattttttt
     3241 agaaggtgtg catgctcttg aagaaaatgc tcaaaagcgt tataaaaaat ctttttcttt
     3301 gcttaaaggt ggagatcagg ataaaatttt aagcgatttt gaaaaaggaa aaattcaaac
     3361 tacaggtttt aaatcttctt attttttcac acttttaaga gatatgacag tagctggagt
     3421 tttagctgat ccaatttatg gcggaaatga taataaaaat ggttggagaa tgatgcaata
     3481 tccaggtgca caaatgagct atgtggataa aattgcaagt gatgaatttt ttaacattga
     3541 acctatgagt ttagcagata tggagagtta aaatggctga agtattaaaa aaagtagatg
     3601 tggtaacagt tggagcagga tggactggag gtatagtggc tgcagagctt actaaagcag
     3661 gtttgaatgt acttagttta gaacgcggac atatgcaaag tactgaaaat tttaatttta
     3721 tccatgatga gtggagatac gggattaatt atggtttgat gcaagattgc tcaaaagaca
     3781 ctgtgacttt tcgtcatgat cctagtggtt tagccttgcc ttatcgtaaa atgggttcgt
     3841 ttttattggg taataatgtt ggcggtgcag gggtgcattg gaatggttgg acttttaggt
     3901 ttatgcctta tgactttgaa attcaaaccc taagcaaaca aagatatggt aataaattag
     3961 gtaatgatta taccttgcaa gattggggcg tgacttataa ggatatggag ccttattatg
     4021 atagatttga aaaaacctgc ggggtatcag gtgaaccaaa tcctttagcg gaaaaaatgg
     4081 gagcttttag atccagtcct tatccacaag aacctcttga aaatactaaa atgcttaaac
     4141 gatttgaaag tgcagcaaaa agttcaaatt tacacactta tcgtttgcca gcttcaaatt
     4201 ctaaaggtgg ctatacaaac cctgatggtc aagatttagc tccttgtcaa tactgtgcgt
     4261 attgtgagcg ttttggttgt gagtatggcg caaaagcaag tcctttaaac acagtaattc
     4321 caaaggctat gagcacaggt aaatacacca tacgcactta tagcaatgta acgcaaattc
     4381 ttaaaaaaga cggaaaagta acgggggtaa aatttgtcga tactagaacg atgaaagagt
     4441 atatccagcc tgctgatata gttgtactta caagttatat gtttaacaat gctaagcttt
     4501 taatggtaag caacataggc gagcaatacg atccaaaaac aggtaaagga actttaggta
     4561 gaaattattg ttaccaaatg aatatgggca caacagcttt ctttgatgag caatttaaca
     4621 cctttatggg ttcaggtgct ttaggaacta cgagtgatga ttttaacgga gataattttg
     4681 atcattctaa ggaaaaattc cttcatggag ctatgattta tagcgttcag cttggaactc
     4741 gccctataca atcagcccca cttccagcag gagctccaac ttggggtgcc gaatttaaaa
     4801 aagcattaaa ctataatttc acaagagcta ttacagtagg agggcaaggt gcttctttgc
     4861 ctcataagaa taattattta agtcttgatc caacttataa agatgctttt ggtatgccac
     4921 ttttacgctt aacttataat ttcaccgatc aagatagagc tttgcataaa tttatcacag
     4981 ataaaacagc tgaggtagca aaaagaatgc aaggagtaaa atcaatcaaa aaaggtgctt
     5041 atcttaagga ttatagcgtt gtgccttatc aatctactca taacacaggt ggaacaacca
     5101 tgggcgcaga tagagaaact agtgtggtta atacttattt acaacactgg gatgcggata
     5161 atctttttgt tgtaggagca ggaaatttcc aacacaatag tggatataat ccaactgata
     5221 ctgtgggagc tttggcttat cgctgtgctg aaggtatttt aaaatatcat aaaagtggaa
     5281 aaagcttagc ttgataataa cttgagagtt tttgaaaact ctcaagatta taaattttta
     5341 attttcttcc gatatagtat ataatatcaa ggaaagcaaa aatgattaat ggtataaatt
     5401 cttattcaaa ctacaattat acaaaaaggc aaatgtagtc tgctcttgga gggtggtatg
     5461 caagatgatt actttaagtt cttttaatag atattttgga aataatcccc tgcagacact
     5521 tactaaaatt agagatgaaa gtattgaaaa tgcaaaaatt taaattataa aaaggataaa
     5581 aaatgttaaa tattttacat gcaaattcaa gtcatcgttt ccataaatgt atgcctaagg
     5641 aagttcatta aatatatgat actttaaagc ttatggaaca gcaagaagat acaaaaaaag
     5701 tagaagccaa aaaagaagag caaagtaatt ctacaaatac agataaagca gataataaaa
     5761 aagataaatt tttagacatg tccgtttagc tttaaaaaag ctttatttat aaggaagatt
     5821 ggcgtaaatt ttttatttaa atctaagaat tttaagatgc gatattgaat ttaatgtcgt
     5881 tattttgcga gttttgttga taagttctag cgacaaaatt tttaaagtct ttatcaaaat
     5941 ttgaattttt atcgttgttt tttgaatctt tatctgtttt ttctaagcta ttttctgaat
     6001 ttttgtcatc tttttcttta ttttcttctt ctttttcttt ggcttcttcg gctttaagtt
     6061 tcattgcttc agctcttgct tcaaattcca tttttgtagc atttgctgca actttatagt
     6121 cttgtgggct aggatcagca ggagccatag ctgctgctgc gatttgtctt gcattggcta
     6181 tagtttcttc tggtgtgttt cctttttgca tgctgatagg aacttcgccc gctgtagcat
     6241 acatttgatt atcagggcct cttgtgtaag taaaacttgc agcacctgct aagccgccgc
     6301 ccgctgcttg atgtgcagct tcatgagctt ttacatttct atcgatactt tggagttcgc
     6361 gaacttgagc tacttctttt tggcttagct ctacgccatt aaccatttgg gtttgttcgc
     6421 catttttttc tttatcatct ttattttcgc taagattttt ttcatctttt tgagtggaat
     6481 cagattgatt tgttttatca aaagaaggtt tgctagagta gtaatcataa gagttataac
     6541 ttgaactaat ttgcatttat cctccttttt gttttttaaa ttttaggaat tttaacgcat
     6601 tttgacttaa aaatttgata aattttgtaa aataatcata aatacaattt caaaggaatg
     6661 taatgattta tgaaaatgat ttgatttata tagagaaaga ggaggctcaa gtgccttggc
     6721 ttaaaatttt tactaaagaa atttataaag aatttagcga ttgtccttta gagttgcaaa
     6781 aagaactttt tgaaaaaatt ttactttgtg aaaaggctat gatagaattt tacaaacctg
     6841 aaaaaatcaa tatcgcctct tttgcaaatt atgtgccaag ggtgcatttt catgttatgg
     6901 caagatttaa agaagatgcg ttttttccag agtgtatgtg gggaaaacag caaagagaag
     6961 caataaagct tgatttgcct aaatttgaag aatttgtaaa atttttaaat agtaaaattt
     7021 tttaatt
//
LOCUS       DAZAND010000087         6807 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.087, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000087 DAZAND010000000
VERSION     DAZAND010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6807
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.087"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            77..361
                     /locus_tag="ACHDOB_001465"
     CDS             77..361
                     /locus_tag="ACHDOB_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF362 domain-containing protein"
                     /protein_id="HFN3326380.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDVNNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            474..887
                     /gene="ndk"
                     /locus_tag="ACHDOB_001466"
     CDS             474..887
                     /gene="ndk"
                     /locus_tag="ACHDOB_001466"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HFN3326381.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            888..1241
                     /locus_tag="ACHDOB_001467"
     CDS             888..1241
                     /locus_tag="ACHDOB_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326382.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINSKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            1265..1411
                     /gene="rpmF"
                     /locus_tag="ACHDOB_001468"
     CDS             1265..1411
                     /gene="rpmF"
                     /locus_tag="ACHDOB_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HFN3326383.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            1417..2403
                     /gene="plsX"
                     /locus_tag="ACHDOB_001469"
     CDS             1417..2403
                     /gene="plsX"
                     /locus_tag="ACHDOB_001469"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HFN3326384.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNENATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIINKTLLLDVGANTDCKAENLFQFAIMGEVY
                     ARAIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKPSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            2396..3370
                     /locus_tag="ACHDOB_001470"
     CDS             2396..3370
                     /locus_tag="ACHDOB_001470"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HFN3326385.1"
                     /translation="MLKASLKSIASYIPEKILSNADLEKMVDTTDEWITRRTGIKERR
                     IASENENTSDLGTKAALKAIKRANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSNLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGDLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(3367..3717)
                     /locus_tag="ACHDOB_001471"
     CDS             complement(3367..3717)
                     /locus_tag="ACHDOB_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFN3326386.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDTLFEKIGACKGDLIQIQIWLANMQDFDAMNEIYDAWIKNYPKPIRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3714..4790)
                     /gene="serC"
                     /locus_tag="ACHDOB_001472"
     CDS             complement(3714..4790)
                     /gene="serC"
                     /locus_tag="ACHDOB_001472"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HFN3326387.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLSLNGVCEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFSDNADYAYICSNNTIYGTQYQNYPKT
                     KAPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGELDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            complement(4800..5963)
                     /gene="xseA"
                     /locus_tag="ACHDOB_001473"
     CDS             complement(4800..5963)
                     /gene="xseA"
                     /locus_tag="ACHDOB_001473"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HFN3326388.1"
                     /translation="MTPTELNLKAKALLETHFEDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGDFLELCGSVSLYPESGRYQFIATSIKKAGFGDLE
                     AQFLALKERLQKEGLFDPLFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NHKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            complement(5960..6667)
                     /gene="ubiE"
                     /locus_tag="ACHDOB_001474"
     CDS             complement(5960..6667)
                     /gene="ubiE"
                     /locus_tag="ACHDOB_001474"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052624 - 2-phytyl-1,4-naphthoquinone
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0042372 - phylloquinone biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HFN3326389.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVVWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVIERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEMLD
                     YKSFSFGVSSMFIAKKL"
BASE COUNT         2369 a         1105 c         1000 g         2333 t
ORIGIN      
        1 ttgattatca aaatttacat tatttaagaa ttttatgcta aaatctttta aatcttaata
       61 ttaaaaagga gaaaaaatgg ctgtaaaaat tacagatata tgcattgctt gtggttcttg
      121 tattgatgag tgtccagtga gtgctatcgt tgatgatgtt aacaatccag aaggcgaaga
      181 tagatattat gtttatgcaa acaaatgcgt tgaatgcgta ggacataatg atcaacccgc
      241 ttgtgctagt gcttgcccaa cagatggatg tatagtttgg agtgctgtag aatcaggaca
      301 accaagtcgt gataatattg gcgctgatat gagaagtggg gacactccag tttttgcata
      361 attttaaaaa attaaaaagc tagagattcc tagctttttc ttttaattta actttcttta
      421 aacaaattca agtataattt taagctttat taaaataagg agttattaca aagatggaaa
      481 aaactttatc tataattaaa cctgatgctg ttaaaaaagg tgttatagga aaaattttag
      541 atcgttttga aagcaatgga ttaagaatcg ctgcaatgaa aaaagttcaa cttagtaaag
      601 aacaagctga aaatttttat gctgttcata aagaaagacc tttttttaaa gacttggttg
      661 aatttatgat tagcggtcct gttgttgttt ctgtactaga aggagaaggt gctgtattaa
      721 aaaatagaga tttaatggga gcgacaaatc ctaaagaagc taaagcagga acaattagag
      781 ccgattttgc tgagagtatt gatgctaatg ctgttcatgg aagtgacagc ttggaaaatg
      841 caaaaataga aattgatttt ttctttaaac caaatgaaat ttgctaaatg aaaatccctt
      901 tttctaagat taatacaaag gaatatcctt ttaaacttaa tcttgaaaat atgatttttg
      961 agggaaattt agtaaaaata aattctaagc ttgttaaaat aaatgctatt atgcaaggtt
     1021 ttatctatag accttgtgat agttgtggaa ctgagttaga acttgaaatt aaagaaaatt
     1081 tagaactttt tgcaagtgat ggtattttta aagatgaagc aaacgaattg agcaatacta
     1141 tagaattttt cgatggacat attgatttaa tagaagttgc tatcagcgag cttgaagctt
     1201 atttaagtga ttatttttat tgcataaatt gcaataatta attaaatttt ataaaggaga
     1261 aaaaatggca gtaccaaaga gaagagtgag caaaactcgt gcagctaaac gcagaactca
     1321 ctataaagtt agtcttccta tgcctataaa agacaaagat ggaagctaca aaatgcctca
     1381 ccgtgcgaat ccaacaacta aggaatatta aaatcaatga ttaacattgc cattgatgca
     1441 atgggtggtg attttggaga aaaacccatt atagaaggcg ttttaaaggc gctagaagca
     1501 aaacctttta acgctatctt agtgggaaat tctaaaattc taaaaccttt aataccaaaa
     1561 aaattagaac aatatataca atacgaagaa gctagtgaaa ttttttcgat gaatgaaaat
     1621 gccacagatg ctttaaaaaa taaagaaaca accatataca aagctattaa tttattaaaa
     1681 gaaaaaaaag tagatgctgt agtttcagcg ggtcatagtg gagcaagtat gtctttggct
     1741 accttaaggc ttggaagact taaaggcatt tcaagacctg ctattgccac tttaatgcca
     1801 aatatcatta acaaaacttt acttttggat gttggagcta atacagattg taaagctgaa
     1861 aatttatttc aatttgccat aatgggtgaa gtttatgcta gagcaatcat gcaaattcaa
     1921 aaaccacgcc ttgctttact ttctaatggt gaagaagaat gcaaaggtaa tgaacttacc
     1981 aaagaaagtc atcagcttat gaaaaaaatt ccaaatttta taggtaatgc tgaaggtaga
     2041 gatattttca atggtgaaat agatgtttta gtctgtgatg gttttgatgg aaatgttatt
     2101 ttaaaggctt gcgaaggtgt agcaacagct atttttcaac ttctaaaaaa cgaagtaaaa
     2161 caatctttta tttctaaaat aggtgcttta cttatgaagc catcttttaa aaaattaaaa
     2221 aaacacacag attggcaaga atatggcgga gcaccccttc ttggagttaa tggctgtgtg
     2281 atcataagtc atggaaaaag cgattctaga gctattaaaa atgcaatttt tcaagctata
     2341 aattttagcc aatctcatat caatgaactt atagaaaatg aacttgggaa atacaatgct
     2401 taaagccagt cttaaaagta tagcttctta tattccagaa aaaattttaa gcaatgctga
     2461 tcttgaaaaa atggtagata ccaccgatga atggatcact agacgcacag gtattaaaga
     2521 aaggcgcatt gctagtgaaa atgaaaatac tagcgatttg ggcacaaaag ctgcattgaa
     2581 agccataaaa agagcaaatt taaaacctga agatattgat gctattctcg tagccacttt
     2641 aagtcctgat tattttacta tgccttcaac agcttgtaaa attgcttcaa atttaggact
     2701 cgtaaatatc agtgcttttg atatttcagc agcttgttct ggttttatct atttacttga
     2761 acaagctaaa gctttggtag aaagtggttt gaaaaaaaat gttttaatca taggagctga
     2821 aaaaacaagt tccattatgg attacaatga cagaagtatt tgcatactct ttggagacgg
     2881 tgcgggtgct ggagttgtaa gcttggataa tgaaaatcac atccttgatg tacatactgc
     2941 aagcaatggt aattatggag atcttttaat gactcaaaga tcgcaaaaat caaacctatg
     3001 tcaaacactt tctatgcaaa tgaaaggcaa tgaagttttt aaaatagcag taaacacact
     3061 tagcaatgat gttgtagaaa ttttagccaa aaataacatt ttagcacaag aaattgatct
     3121 ttttattcct catcaagcta atctacgcat cattaaagcc gtccaagaaa aactcaatct
     3181 aagcgatgaa aaatgtgtga ttaccgtaca aaaatatggc aatacctcag ctgcttctat
     3241 acctatggca atgaatgatg cctatgaaga aggtcgactt aaaaaaggag atctaatctt
     3301 actagatgct tttggcggtg gttttacttg gggatctgca cttttaaaat ttggaggaga
     3361 gaatttttaa ttctctctta gctttccaaa agcttgaatt tccaccaaat aaccctctgc
     3421 taaagcactt cctacacaag ctctaatagg tttagggtaa tttttaatcc aagcatcata
     3481 aatttcattc attgcatcaa aatcttgcat attagctaac cagatttgaa tttgaatcaa
     3541 atctcctttg catgcgccta ttttttcaaa caaagtatca agttctgcaa gtgcttcttt
     3601 agtttgtttt ttaatatctc cgctaggttc aaaagccact tgtcctgcag ttttaaaata
     3661 tttatcaaaa acaataattt gcgacattct atcgcactca tcaaaacgct ttatcatgca
     3721 tattttcctt gaaattcttt cataaattca cacaaggttt ttacctgatc caaattaagc
     3781 gcattataaa tacttgcacg aattcctcct aaaattctat gtcctttaag tcctatcatt
     3841 ccagcttctt cggcttcctt tacaaaaaga ggctctaaat ctttattttt agcaatatta
     3901 aaactcacat tcattaaaga tctatccttt ttatctgcat gtcctttata aaatccattg
     3961 cttaaatcaa tacactcata aagcatagca gctttttgag aatttttctc atgtacttta
     4021 tcaagttcgc cttgatttaa aagccaatcc atttcaagat taaacatata aatagcaaag
     4081 gttggaggcg tgttaaacaa ggactgattc tcagcatgag tcaaataatt taacatacta
     4141 ggaatttgtt tatttttaga tctttctaac atatctttac ggataaaaat acaacttaaa
     4201 cccgaaattc cagcattttt ttgcaccccg ccataaaaaa gagcgatatt tgaaaaatct
     4261 acttttctag aaaaaaaatc actcgatgca tccacaatca aaggagcttt agttttagga
     4321 taattttgat attgagtgcc gtaaatagta ttgttagaac aaatataagc ataatcagca
     4381 ttatcactaa attccactct aggaatatga ttaaaattac tttcctcgct acttgctacg
     4441 gttttaacat tgacacctaa aatttgcgct tctttaattg ctttttttgt ccaaactcct
     4501 gtatttgcat attcacaaac cccatttaaa gacaaattca taggaatcat agcaaattgt
     4561 aaacttgctc caccttgtaa aaataatact tcataatcat catttaaccc gtaaagtttt
     4621 ttagctttct cttgtgctcc aaaatgcact tcttcaaata cttttgtgcg gtgagaaatt
     4681 tccattatag aataacccct accctgataa tcacagagtt ctttttgagc ttgctctaaa
     4741 atttctaaag gtaaagtcga tggccctgca ctgaaattga tttttctcat aatctatcct
     4801 tataaaattt ttgcttcttt ttgagaagtt tgagaactta aaataacaat atcatcactc
     4861 ttaagatctt ctaaatttgc tattttacca ttttttctga tacaaataaa ctttttgctt
     4921 ttattaaaaa aattctcatg ttgcaaataa gcattttgca atttatctaa ttttaattca
     4981 ttataacgca tttgatttgc tagtagatga tttaattgct tttctatatt atggctttgt
     5041 tttatttttt catctattat ttttggcaaa gaattaaatt tgaaaaattt gcttaaattt
     5101 aaaagcaaat tttcataatt ttgtatttta tgattccaaa gttgcatcaa tttttcttcc
     5161 attaaatcca aactttgctc tatatccagc ttagaataaa acaaagtatc tatagcagct
     5221 gagggcgttg gagctctaaa atctgcaaca aaatcactaa taacataatc aatctcatgt
     5281 cctatggctg aaatgatagg agtttttgct ttaaaaatct ctcttgctaa attttcatca
     5341 ttaaaacaaa aaagatcttc cctgcttcct ccaccacgtg ctataataag aacatctaaa
     5401 tccatatcat cggctttttt taaagcttgt ataagagaaa aaggagcatt atttccttga
     5461 gttaaagcat caaaaatata aatttttgcc aaaaaatatt ctttttgatg aataagtttt
     5521 aacatatctt gcaaagcagc agaagttttt gaagtgataa tgcctacttt tttaggaaat
     5581 tttggcaaag attttttaaa gagtggatca aaaagtcctt ctttttgcaa acgctctttt
     5641 aaagccaaaa actgtgcttc caaatcccca aaacctgctt tttttatact agtagcgata
     5701 aattgataac gaccactttc aggatataaa ctcacacttc cacaaagctc taaaaaatcc
     5761 cccacagctg gtttaaatcc gacttttaaa ttagctcctt taaacatagc acaagcaatg
     5821 cttgatcttt catcttttaa atcaaaatac caatgccctg aaccatgcaa agtgattttt
     5881 gaaatttctc cacttaaaac tatatcctca aaatgtgttt ctaataaagc ctttgcttta
     5941 agatttaatt ctgtcggcgt catagttttt ttgctataaa cattgaactc acgccaaagc
     6001 taaaactttt ataatcaagc atttcaaaac cagcattttt aagttctaag atgaactctt
     6061 ccttacttaa aaatccttca atagagtttg gcaaatactc ataagcactt ttatttttac
     6121 tgattatccc acctatactt ggtaaaatat ttttaagata aaaatctcta caagctgcta
     6181 taaatccacc cttttctctt tttgtaaatt ccaaaactac caaaatacca tctttttgaa
     6241 gcactctagc aaattcactt aaggcttttt gtctttctat aacattgcga atgccataac
     6301 taatacttaa aatatctaaa ctttgacttt ctaaaggcaa attttgcgcc cctgcttcta
     6361 taaattcgac attcggaaat ttttcttttg caacatttag cataccacta cttggatcaa
     6421 tacctttaat atttaaaatg tttttttcca tttttaaagc actctcttgc caaatctcta
     6481 tcatatcccc tgtgccacag gcaatatcag cgatttttaa atcttttttt aaatataaac
     6541 tcatcactct ttgacaagct tttttgcgcc acactacatc agctccaaag cttaaaattc
     6601 tattcgcctt atcataagta ggtgcaattt gattaaacat ttctataatt ttttcttgtt
     6661 tttgcatttt tatcctttgt aaattttcaa atttttactt gattttttaa gcaatttgca
     6721 aaatttattt ttattattga ttattttcga aaaaatattt ttatctctat ctttacaata
     6781 tttttcataa agtttgttta aattttt
//
LOCUS       DAZAND010000088         6618 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.088, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000088 DAZAND010000000
VERSION     DAZAND010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6618
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.088"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(38..799)
                     /locus_tag="ACHDOB_001475"
     CDS             complement(38..799)
                     /locus_tag="ACHDOB_001475"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFN3326390.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(835..2829)
                     /locus_tag="ACHDOB_001476"
     CDS             complement(835..2829)
                     /locus_tag="ACHDOB_001476"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HFN3326391.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKEISENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFSRTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKTTKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(2798..3598)
                     /gene="rsmA"
                     /locus_tag="ACHDOB_001477"
     CDS             complement(2798..3598)
                     /gene="rsmA"
                     /locus_tag="ACHDOB_001477"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HFN3326392.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KMLFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDSYLKIYDKLKDEYGRKQRDK"
     gene            3678..4214
                     /locus_tag="ACHDOB_001478"
     CDS             3678..4214
                     /locus_tag="ACHDOB_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HFN3326393.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLGQLCFKEKPSKLIFIG
                     TCGLYDKGKILEIYKSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            4237..5307
                     /gene="rlmN"
                     /locus_tag="ACHDOB_001479"
     CDS             4237..5307
                     /gene="rlmN"
                     /locus_tag="ACHDOB_001479"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HFN3326394.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     SLPKYLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRVESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDGLRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            5304..5399
                     /locus_tag="ACHDOB_001480"
     CDS             5304..5399
                     /locus_tag="ACHDOB_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326395.1"
                     /translation="MTMLDIFEIVFITAVVIIGFFGIIYFLNKER"
     gene            5404..6432
                     /locus_tag="ACHDOB_001481"
     CDS             5404..6432
                     /locus_tag="ACHDOB_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HFN3326396.1"
                     /translation="MLNTTKLLENKLFQERYIKPNIDWYFSYLNGKRGMSRIYKTPYA
                     ILMKKFFLQKYFEKRIKKRIIDIPYLELVLTTKCTMRCQSCNNLMQYFSQNNQYTCTF
                     EGIKKSLEILLSKVDSIARIRIIGGEPLLFKDLPKLIDYLNCQKKILTFSLVTNGTID
                     FKDELINKLKHSKKVRKITISNYKNSPNLKIPLKQEDIIKKLIKNKIPYSLDSNKENS
                     TWFDPEKIYKRGRNKEEIIKNYYYCKMPCVSLMTSEGENLKGKELASNGAIFVCPVSS
                     SLSRLKGLNEFEGDFLNLDDNIEKFFEFYIKDFYKACDYCRDFSKPYKRIPIAIQTNK
                     TLKLEKED"
BASE COUNT         2212 a         1032 c         1015 g         2359 t
ORIGIN      
        1 aaattatcat tattttttaa atttttgtat ataatggtca atatcttatt tcattaaatt
       61 ttaaaaaatc tcttaatttt tcatattctc cattttccaa atagcgatgt tttcctgcct
      121 tcaacatacc aagatctaaa gccccaaaag caacacgctt aagatccatg acttcaagat
      181 caaaatgtcc aaaaaagcgt ctaagctctc tatttttacc ttcatttata accactctaa
      241 gcttagtata acctccactt gatccaaaaa tttcaaagtc tataaaagga gcaaaactca
      301 tagaggtaat tttagttttt gcatgtgcgc cttttttttc atttttaatc tcaagtccat
      361 tttgcatggc ttcgatgact tgtttgctca ccgtgccttt aactttaagg tagtattctc
      421 tttctaaatc gctatgcatt aaagcatcgg caatcacagg agaatctgta agcaaaagca
      481 agccctcgct tgcataatcc aatctaccta cgctaagcca agtactaaat tgtcttggca
      541 aggtatcgta tatagttttt cttccacgat cgtctttttt actgacaatt tcaccttttt
      601 gtttatggta gattatcacg ctaaattgcg ttcttttttg cactctttta cctttaacaa
      661 aaactttatc atcaaattta acttcatcgc ttaaaagggc aattttgttg tttattttta
      721 ctaagccttg tttgataagt tcatcagctt cacggcgtga ataacgagtg ttatgggata
      781 taaatttatt aattctcatt tgatcttcct taaaaagggc gtttttgccc ttttttacat
      841 tacaaaaata gttggaacta tggttgggta ttttttaatc tttctaaaga tatgctttct
      901 taagacttgg cggatttggt tttctaaaaa tcttggatca ttgagtactt catctttaac
      961 attgatgaaa aattgcccta aaacttcagc catatcttta ctaaaagcat gatcgtgttt
     1021 gtcagctact aacccatagc taaacactct tggcttgttg atcagtgttt ttgtagtttt
     1081 gtcaatttgt gcgataataa ctactatacc actatctgca agtttttgac gatctataac
     1141 tacatcatcg gcaatttgtt tgttgatttg attatccaca aaaactttac ctgtttttac
     1201 ggtttttatg cgtttgacat atttttggca aagttctact tgatcgccat cactcataag
     1261 atagatattt ctttcgggga taccgcattt catcgctgtt tctttgtgtt tggtgatatg
     1321 attgtattct ccatgaaccg gtaagaaaaa tttaggttta gtaagggtta gcataagttt
     1381 ttgctcttct atgctagcgt gtccgcttac atgaatttca ctaaattctt gatacgctac
     1441 tttagctcct gcttttaaaa gatagtcaag caccgcagaa acacttgctt catttcctgg
     1501 tatggcttta gctgaaatga ttacttgatc tgtaggctta atctttataa atttatgctc
     1561 atcagttgcc attctataaa gcgcactcat ggtttcgcct tgacttcctg tagttacaat
     1621 aagcacttca ttgtctttat atttgcttac ctcatcagca tcgatgaaaa tttttctatc
     1681 aagtttaata tagcctaatt ccatagtagt ataaagattt ctttccatag aacgaccaat
     1741 aacacaaact tttctgccgt attttaaacc ataagtgata gcctgataaa cacggtggat
     1801 attagaacta aaagtactca tgatcaccct acccttagta cgcgaaaaaa tttgatcaaa
     1861 agttggccct acagagcttt cactttttgt ataaccttct ttataagaat ttgtactatc
     1921 acttaaaaga cataaaactc cttcttctcc ataatgtgct aaacgtccta aatctgttgg
     1981 atagccatca attggagttt gatcgatttt aaaatcacct gtgtggataa tcgttcctgc
     2041 ttttgttttg atcgcaagtg ctgaagcatc aatgatagaa tgcgtgatat gaatccattc
     2101 tatatcgaat tcgcctatct cataaacacg gcgtttttct acagggcgaa accatttgcg
     2161 ttctgctttt aagccatgtt cttcaaattt gtttgaaatc attcctaaag ctaaaggtgt
     2221 agcgtagata ggaaattgga attctttaaa gaaataaggc accgcaccga tatgatcttc
     2281 gtgtgcatga gtgatcacta taccacgaat tttatcttta atttttctta catagtcaaa
     2341 atcagggatg ataatatcta ccccatgcat agttccatca ggaaaactca tacctatatc
     2401 tactataatt gcatctttat tggtttcaaa aacactgata tttccaccaa tttctcctaa
     2461 gccccctaaa ggagtgatgc ggattttatg ttcgctagaa ttgttatatt ttaaagggtg
     2521 taagcggttt tcatgtgaaa cacggttagc ttctatacat tctgcaagag cgatttgcca
     2581 atcttcatta cctgtgagtt ttgaaggaag attgcgattt tttttctttt ttttctcagt
     2641 tttattttct gagttttcag aaatttcctt gttggaattt tgatcgattt ttggagtatc
     2701 gttttcattt tgtaaagaat cggctaattt ttttctgcga tttttatatt tatagcgttt
     2761 attgtttttt gaatttgagt tcggattttg ttcgttttta tttatctctt tgttttcgtc
     2821 catattcatc ctttaatttg tcataaattt taaggtatga atcaacgcaa atttcatgtg
     2881 gtctgatgtt ttcttttaag ccaagagtgc ttaaaacttc taaaactttt gctttatatg
     2941 tttttaaatt tcctaagagt tgttttctag gagctttaaa acagtctttt agaaaatttt
     3001 tgaaattttc tatttcgcaa agttcatcaa aatccttagt tttaatcaaa ctcatcaccg
     3061 ctgacataac ttttggcggt ggattaaaac attgtggatc aacatcaaaa agcatttttc
     3121 tttcgcaaat cattgcactt aaaacaccta aggaagaaaa ctcactattt ccttctttag
     3181 cgcagaattt ttcagccatt tctctttgca ccattacaat aagccctaga caatttttat
     3241 cttctaaagc ttttaatata atgtgacttg caacataata aggcaaattt gcaaccaaaa
     3301 aatatggttt ttcatcaaga ctaggattaa aagcttcgct tgcgtcttga tggatcaagt
     3361 taaattttcc acattcaagt tctttttgaa atttcttttt taaaataggt atgagatcat
     3421 tatcgatttc ataagctttt acttgagaaa tttttaaaag ttcttgcgtt aaatcaccta
     3481 agccaggccc aatctcaata atattgttca tctctttggg tatggcttgg atgatttttg
     3541 ctaatacgct tttatcgatt aaaaaatttt gtccgtattg tttttttgct ttaaccataa
     3601 gaaataattt tatctaaaaa ttcttaatta agtcttttta ggtagaatta tttttgtaaa
     3661 atttcataag gatcaaaatg attgtttgtg cgggtggaaa tgaaaatttt tcttttgcaa
     3721 aagctatagg tataggtttg gttgaatcag cttttcattt gggtcaactt tgcttcaaag
     3781 aaaaaccatc aaaacttata tttataggaa cttgtgggct ttacgataag ggtaaaattt
     3841 tagaaattta caaaagttca cacgctttta atgtagaatt ttctaaaatt tcacatgctt
     3901 tttatactcc tgcaaaatat gaaatttgtt tagaaaaaga aaatgtttct cgtgaaacaa
     3961 tcaagatcaa ttcttcaaat tatatttgtc aaaattcaaa agcagcaaaa gaattttcga
     4021 aattaggttt ttttgcagaa aatatggaag ccttttctgt tttaagtgta gctaaaaatt
     4081 taaatattga tgcagagtgt attttgtgtg caacaaattt ttgcaatgaa aacgctcacg
     4141 aagattttat aaaaaatcat caaaaggcaa aagaaaaatt agaagaatac ttaaaaaaat
     4201 atcattatat ttaaaaattc aaaaaggaaa ataattttga aagagcttgt taatatttta
     4261 gattttttac ctgaagaatt aggagaaaaa atcaaaccga tgtttcgcgt gaaacaaatt
     4321 tatcaatgga tttatcaaaa atatgccaat aatttttccg atatgtcaag tttaccaaaa
     4381 tatctacgtt tagaacttgc gcaaaatttt catttttccc ctgtaaaatg tgttaaaaat
     4441 gagcaaagta aagatggaag tataaaatat ctttttgaac tcgttgatgg tttaagggta
     4501 gaaagtgtgc ttttgcctat gaaagaagaa aaaatagacg cagaaggcaa aagaatttct
     4561 catgcaagat acactatctg tgtttcttct caagtgggtt gtaaaagtgg atgtagtttt
     4621 tgtcttactg ccaagggtgg tttgaaaaga aatttaagtg caggggagat agtcggacaa
     4681 attttatgga tcaaaaaaca aaataatatc ccttatgaac gccgtgtaaa tatagtatat
     4741 atgggtatgg gcgagccttt ggataatctt aaaaatgttt ctaaagcggt aaaaatttta
     4801 gcacaaaatg atggacttgc cataagtcct cgccgtcaaa ccatcagcac tagcggtttg
     4861 gcaaaacaaa tcaaagaatt aggtcaaatg aatttaggtg ttttacttgc tatatcattg
     4921 catgcggtta atgatgggct tcgaaccgaa cttatgccta tcaataaagc ttataatatc
     4981 gctgcgatta tggatgcggt gcgtgaattt cctatagatc aaagaaaaag agtgatgttt
     5041 gaatatcttt tgatcgatgg tatcaatgat aagcttgaac acgctaaaga attagtcaag
     5101 cttttaaatg gtattaaagc caaagtgaat ttaatactct ttaatccaca tgaaggaagt
     5161 ttatataaac gccctagttt agaaaatgcg attaaatttc aagatttact cagtagtaaa
     5221 ggtgtaactt gcactataag agaaagtaaa gggcttgata tctcagctgc ttgtggacag
     5281 cttaaagaaa gggcaaaaga acaatgacaa tgctagatat ttttgaaatc gtttttataa
     5341 cagctgttgt aattataggt ttttttggta taatttattt tctaaataaa gaaaggtgaa
     5401 ataatgttaa atacaacaaa attactcgaa aataaattat ttcaagaaag atatattaaa
     5461 ccaaatatag attggtattt ttcttaccta aacggaaaac gaggaatgtc aagaatttat
     5521 aaaacaccct atgcaatttt aatgaaaaaa ttttttttac aaaaatactt cgaaaagcgt
     5581 attaaaaaaa gaataataga tataccttat cttgagctcg ttttaactac aaaatgcacc
     5641 atgcgttgtc aatcttgcaa caatttaatg caatacttct ctcaaaataa tcaatatact
     5701 tgcacatttg aagggataaa aaaatcactt gaaattttac tttccaaagt ggatagtatt
     5761 gcaagaatta gaattatagg tggagaacca ttattattta aagatttacc taaacttatt
     5821 gactacttaa attgtcaaaa aaaaattttg acatttagtt tagtaacaaa tggtactatt
     5881 gattttaaag atgaattaat taataaactc aaacattcta aaaaagttag gaaaatcact
     5941 atttcaaatt ataaaaattc accaaattta aaaatcccat taaaacaaga agatataatc
     6001 aaaaaactta taaaaaataa aatcccatac tctctagact ccaataaaga aaattctaca
     6061 tggtttgatc cagaaaaaat ttacaaaaga gggcgcaaca aagaagagat tataaaaaat
     6121 tactattatt gcaaaatgcc ctgtgtaagt ttaatgacaa gcgaaggaga aaatctaaaa
     6181 ggtaaagaat tggcttcaaa tggagctatt ttcgtatgtc cagtttcaag ttctttaagt
     6241 cgtcttaaag gtttaaatga atttgaaggc gattttctaa atttagatga taatatagaa
     6301 aaattttttg aattttatat taaagatttc tataaagctt gtgattattg tagagatttt
     6361 agcaaacctt ataaaagaat tcctattgcc attcaaacca ataagacttt aaaacttgaa
     6421 aaagaagatt aaaaatatat ttcaatcttt aatattagta tatttgcttt tgttcataat
     6481 aaactagcaa ctaaaaacaa atatttttaa atttttaaaa aacaaaagaa gcaataaaaa
     6541 tggatggtgt caagggggag acttgaactc ccgacctccg gcttatgaga ccagcgctct
     6601 aaccagctga gctaccct
//
LOCUS       DAZAND010000089         6047 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.090, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000089 DAZAND010000000
VERSION     DAZAND010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6047)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6047)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6047
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.090"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..522
                     /locus_tag="ACHDOB_001482"
     CDS             <1..522
                     /locus_tag="ACHDOB_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HFN3326397.1"
                     /translation="INYKKLFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSFEG
                     KVVRIIDGDTIEVNHENKLTRIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEIIYK
                     NKDTYGRIVAIVKLNNVDINRFLVSKGYAWADTYYSNAYIKEQENAKKNHLGLWKEGN
                     PIEPYKWRKHNKF"
     gene            531..704
                     /locus_tag="ACHDOB_001483"
     CDS             531..704
                     /locus_tag="ACHDOB_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326398.1"
                     /translation="MKKYTLMILLVLGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     VCPKNWVDIKMTP"
     gene            complement(705..1283)
                     /locus_tag="ACHDOB_001484"
     CDS             complement(705..1283)
                     /locus_tag="ACHDOB_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326399.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLTGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEIKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(1355..2245)
                     /gene="cmoB"
                     /locus_tag="ACHDOB_001485"
     CDS             complement(1355..2245)
                     /gene="cmoB"
                     /locus_tag="ACHDOB_001485"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HFN3326400.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYTKIQELKALNLACNFSLDDSVNL
                     STNSQAKDEILAITKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIEYELLGVEDLPRY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYVRIGI"
     gene            complement(2319..2642)
                     /locus_tag="ACHDOB_001486"
                     /pseudo
     CDS             complement(2319..2642)
                     /locus_tag="ACHDOB_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790742.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family non-heme iron protein"
     gene            2820..3449
                     /locus_tag="ACHDOB_001487"
     CDS             2820..3449
                     /locus_tag="ACHDOB_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HFN3326401.1"
                     /translation="MQMQEVIEKLKDILASEGKRDLKTKDIAKELGINPDTFNSMKFR
                     NSIPYPQILNFLNERNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGGGGINDL
                     IDCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVIN
                     TRDGLYIKQVLKQDDGVILHSLNPLYEDIFYKNGDFLLIGVVIGELSKM"
     gene            3530..3850
                     /locus_tag="ACHDOB_001488"
     CDS             3530..3850
                     /locus_tag="ACHDOB_001488"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326402.1"
                     /translation="MKDIKNYTDKELKEKIIQDLESEFRILYKKLLKEKDYLARDNIL
                     ELMTIYNMGINSYSIAKRFEMNEDKSLIQVPLFERYIIGRKFVVKYNDEKQRYELKST
                     FCEF"
     gene            3860..4054
                     /locus_tag="ACHDOB_001489"
     CDS             3860..4054
                     /locus_tag="ACHDOB_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326403.1"
                     /translation="MKYPNVYVKLVGEDGNAFSILARVSKALKKAGVSKEEISKFQKE
                     AMSSDYNHLLNVVQDWVNTN"
     gene            4134..4421
                     /locus_tag="ACHDOB_001490"
     CDS             4134..4421
                     /locus_tag="ACHDOB_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326404.1"
                     /translation="MSKVIVDIKKGFSKTFINAICNHNNELVLEYLKNGMSATKECMG
                     EEPMFYAITHNNFGAILLLLKYGAILDKEYLEESNKDFSKEALKFLSSLLK"
     gene            complement(4451..4618)
                     /locus_tag="ACHDOB_001491"
                     /pseudo
     CDS             complement(4451..4618)
                     /locus_tag="ACHDOB_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297138.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
     gene            4620..5045
                     /locus_tag="ACHDOB_001492"
     CDS             4620..5045
                     /locus_tag="ACHDOB_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFN3326405.1"
                     /translation="MQRDANFYSIPKLNVSASTSGDNELIGLEGYETGEMLELSKAFF
                     KTTPKNMKAIKVDGYSMVPMLLPDSWVVFEETHKYQGDGLYILNFDNQLMVKLLQLDP
                     ISKVLDIISVNKDYKSYSLDLKDSQVELIIQGKVLRFII"
     gene            5219..5524
                     /locus_tag="ACHDOB_001493"
     CDS             5219..5524
                     /locus_tag="ACHDOB_001493"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326406.1"
                     /translation="MQKIDENFKKEKEQNKDLELNKFQITSREIFTIKTPENKDVEVE
                     LTCTAGLIQTSQINYEEIVRKEFLYKCFPVTWNDFLKLNKYEKNWHIQLKIVMILDC"
     gene            5758..5925
                     /locus_tag="ACHDOB_001494"
     CDS             5758..5925
                     /locus_tag="ACHDOB_001494"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326407.1"
                     /translation="MKLYIILTFLKDDESIDIYYPPNFYEDTSIFNIVEHSFFNSREY
                     YKNYKLLIVLI"
BASE COUNT         2267 a          770 c          929 g         2081 t
ORIGIN      
        1 ataaattata aaaaattatt taatttaaga aaattactaa gtgatccaaa aaaacttttt
       61 tctgtattaa tttttactct tgtagttgtt tttatccaga attatattgc ccaaaattct
      121 agttttgaag gaaaagtagt tagaattatt gatggagata ctatagaagt taatcatgaa
      181 aacaaactca ctagaataag attttttggt atagatgcac cagaacttaa acaaagtttt
      241 ggaaagcaat caaaagaagc tttaagcaga attttaagcg gtaaacaagt tgaaattatt
      301 tataaaaata aagatactta tggtagaatt gttgctattg taaagcttaa taatgttgat
      361 attaatcgat ttttagtaag caaaggctat gcttgggctg atacttacta tagtaacgct
      421 tatattaaag aacaagaaaa tgctaagaaa aatcatttag gtctttggaa agagggtaat
      481 cctatagagc cctataaatg gagaaaacac aataaattct aaggaaaaac atgaaaaaat
      541 atactttaat gatactatta gttttaggaa tttctggatg ttttgtaaat gaaagaggaa
      601 tttcaaatcg tttttatgat gattgtaaag aatattatga tggaagtgga acttatcata
      661 aggtttgccc aaagaattgg gtggatatta aaatgactcc ttgattattt tccacccaca
      721 gaggccatta atgcagctgc tacggcttct ggattgttga ttttggcacc ttgttcttga
      781 ttttctgtag gtttaacagt attaagtggc ggacgcttga gtttaaatat atgctcatca
      841 gtgctaacaa cttgtatcgt tccttcaaac attttaattt ctttaacatg cccgaccact
      901 tttacatctc tttttttgga ggtttcgtca aaaagtgcat gagcttcaag ttctaaaaca
      961 tcgcctaatt taagcggagc ataaaaaaaa cattttgatc caataatcac tgaaaattct
     1021 ttattgatag aggcttgtgc tacatagttt gccgcagcga aaataaaggc atcaaaaatc
     1081 aatccttgat catctgctac catttcgctt gtggttatta aaattgattt ggcatagttt
     1141 ttatcaattt ctataatggt tccagtaagc gaagtgttta attcaggaca agtgagtaat
     1201 tctgctctaa cacgagatat atcttctgca gatgcgtatt cttcaagttg tgcatattct
     1261 tcaaaattat ctttttttgc catatctaac ctttaaattc tacttatcta cttcaaaata
     1321 tctaaagcct agatcgacaa aaagcaaaaa gaatttatat cccaatacgc acataaactc
     1381 ttttgggtgc ttcatagcct tcaatggtaa gatttttatc ctttggatct aagaaatttt
     1441 ccagcgaaaa agagtctatc cattctgttt ttctttgttc gttttcatcg gttttttttg
     1501 tagccaaaac ttcaaattct ttaaatcctg ctctttcaca ccagtttttt aatgcactaa
     1561 tgcttggtac aaaataaata tttggaattt tagaataagt tttattaggc acaagagcga
     1621 tttctctctc atcttctata tacatggtat ctaaaaaaac aactccattt ttattaagtc
     1681 ctgcttttaa atcttttagc atttttatag gatcacttct atgataaatc accccaagac
     1741 agaaaatcac atcaaatttc aagccatatc ttggaagatc ttctacgcct aaaagttcat
     1801 attctatagg agttttagct aaagcgttaa tgagttcaaa ttgcaaacgg tatttgatag
     1861 aaggatcaaa acctatgagt tttgcaggat taaattcaag cattttaaac atataataac
     1921 cattattaca gcctatatca gcaacgcatt tttgagaaat ttcgttcata aaaggcttta
     1981 aaatattaaa tttaataaaa ctttgccatt ctgtatcgat gaaaagatcg tctattttaa
     2041 aaggaccttt tctccatggt ttaagttctt ttgttatagc taggatttca tctttggctt
     2101 gagaatttgt agataaattt acactatcat ctaaagaaaa attacaagca agattgagag
     2161 ctttaagttc ttgaatttta gtgtataaag ggtgatttag aaattgtttt tcgagtaaat
     2221 tttcttgcat ttttatcctt gacatttgct tttaatgcta aattataaca ttaaaagctt
     2281 ttagaattag caagtataag ctaagattat ttttaaaatc aaaacccttc cgaataaacc
     2341 ttataaaatt ctaaagcttc tctacatttt ttacatttga atttcttacc ttgtaatttg
     2401 attttttcat gaattccaaa aggcacatca tggatagcac ctgagcactt gcaaatataa
     2461 agataaacag cattttcaag ttcttcatcg ccttcttctt caaagcttac ctctttatca
     2521 tcttcagaag ctaaagaaga tcttctatat tgttcaactt tcatatcttc ataaagtata
     2581 tgttctaaaa gccatttttt aacagctaaa taaagttttt cttttaaatc attagtggat
     2641 ttataaaacc gctttacaaa tcaaagtcat ttgacactta aaatcaaagt cttatttttt
     2701 cactttgatt tctaatacga aattcacatc tatattttaa tctttcaaat caaaagtttt
     2761 taattgcttt ttgaaatttt atgtttaaat tctttgaagt taaaatcaaa ggatttaaaa
     2821 tgcaaatgca agaagtgatt gaaaagttaa aggatatact tgcgagtgaa ggcaaaagag
     2881 atttaaaaac aaaagatata gccaaagaat taggaatcaa tcctgatact tttaattcca
     2941 tgaaatttag aaactccatt ccatatccac aaatcttaaa ctttttaaat gagaggaata
     3001 taagcattaa ttattttttc tatggaagtt ccccaaaaga tcaattagaa tgtgagaata
     3061 aatataaaat tttaaagctt tataaaacaa atgcgagttt aggcggaggt ggaataaatg
     3121 atttaataga ttgctctgag cttattgtag atgaaaaatt attaaacttt tttggtagta
     3181 aagagtgtga gtttatcact tgctatggag aaagcatgga gccacttata aaagatggaa
     3241 gtatttgtgt aatagataga aataaaactt ttaagaataa aagcatttgt gtgattaata
     3301 ctagagatgg tttatatata aaacaggttt taaaacaaga tgatggagtg attttacact
     3361 ctttaaatcc tttatatgaa gatatatttt ataaaaatgg agattttttg ctaattggtg
     3421 tggtaattgg agaactttct aagatgtaac agtacacaat aagctaagtc aagctaatct
     3481 cacagagagt gtaaaacaca aggttgttct atcaaaaaag gagataaaca tgaaagatat
     3541 caaaaattac accgataaag aattaaaaga aaaaatcata caagatttag agagtgaatt
     3601 taggattttg tacaaaaagc ttttaaaaga aaaagattat cttgctaggg ataatatatt
     3661 agagcttatg actatttata atatgggcat aaactcttat tcaatcgcta aaagatttga
     3721 gatgaatgaa gataaaagtc ttatacaagt tcctttgttt gaaagatata ttataggtag
     3781 aaaatttgta gttaaatata atgatgaaaa acaaagatac gaattaaaaa gtaccttttg
     3841 tgaattttaa ggagaaaaga tgaaatatcc taatgtttat gtgaaattag ttggcgaaga
     3901 tggcaatgct tttagtattc tagcaagagt aagcaaggct ttaaaaaaag caggtgtaag
     3961 caaagaagaa ataagtaaat ttcaaaaaga agctatgagt agtgattata atcatttatt
     4021 aaatgtggtg caagattggg ttaatacaaa ttgatttcaa aaagatgtca aacaacagca
     4081 cacattcagc caagcgaagc taatcttgtc ttatcaaaac aaaaggagat aagatgagta
     4141 aagtaatagt agatatcaaa aaaggtttta gcaagacttt tataaacgca atttgcaacc
     4201 ataacaatga acttgtttta gaatatctta aaaatggtat gagtgcaact aaagaatgca
     4261 tgggcgaaga gcctatgttt tatgcaataa ctcataataa ttttggagcg attttacttt
     4321 tattaaaata cggtgctatt ttagataaag agtatctaga agaaagcaat aaagatttta
     4381 gcaaagaagc tctaaagttt ttaagctctt tactaaaata aaagagaata taaaaatatt
     4441 ctcttagctt ttaaaaattc ataatcaaaa gctctttgct ttcttttctt tttaaaacat
     4501 tattatttaa agaatacctt acttttaatt ccttaatatt aaaatcttta taaagctctc
     4561 ttataagctc acaatcatta taagaaagca taaatttacc cttgatattt tttaacaact
     4621 tgcagcgaga tgctaatttt tattcaatac caaaacttaa tgtttcggct tctaccagtg
     4681 gtgacaatga gttaattggg ctcgaaggat atgaaacagg tgaaatgctt gagcttagta
     4741 aagccttttt taaaacaacg cctaaaaata tgaaagctat taaagttgat ggttattcta
     4801 tggttccaat gcttttacct gatagctggg ttgtttttga agaaacgcat aagtatcaag
     4861 gagatggatt gtatatttta aattttgata accaattaat ggttaaactt ttgcaattag
     4921 atccaataag taaagtttta gatattatta gtgtaaataa ggattataaa agctatagtt
     4981 tggacttaaa agactcgcaa gttgagctga ttatacaagg caaagttttg cgttttatta
     5041 tataatttaa aggaattaaa gtgaatattg tgttgctaat attaataagt atctttattt
     5101 tcttttatgt aattatttat atagaaaaat aaaaggaaca ccaaataagc cgctaaaaga
     5161 aatttggaat gaatataagc aggaaatgca aaaaatcaac gaagagcata ggtaaaaaat
     5221 gcagaaaatt gatgaaaatt ttaaaaaaga aaaagagcaa aataaggact tggaacttaa
     5281 taaatttcaa ataacctcac gcgaaatttt taccataaaa actccagaga ataaagatgt
     5341 tgaggttgaa ttaacttgta cagctggatt aattcaaact agccaaatta attatgaaga
     5401 gattgttaga aaagaatttt tatacaaatg ttttccagta acttggaatg attttttaaa
     5461 gcttaacaag tatgaaaaaa attggcatat acagttaaag attgtgatga tattggattg
     5521 ttaaaagagg tttatgagca aatattcaaa tatttaaaat gacaaagtga acttcctgaa
     5581 tattttaaaa aagatatacg atctaggaag agatatttgc acgaattttc ggaccccgtt
     5641 caaataaaaa gcaaattaag tttaaaagct tatcgctact atatcgactt ctttttaatg
     5701 aaataccaga aggaagctat tttcctatgc aaacaatgca taggggtgat gagttgaatg
     5761 aagctttata taatacttac ttttttaaaa gatgatgaaa gtatagatat atattatccg
     5821 ccaaattttt atgaagatac atcaattttt aatatagtag aacatagttt ttttaacagt
     5881 agggaatatt ataaaaatta caaactttta atcgttttga tttaaagcca cactctgatt
     5941 gcgactttaa cattccaaaa tatatagtaa agcattattt ggatatgaaa actattgtta
     6001 aagaaaatga acatcataaa cgaatttttt gttagtttta ttttaat
//
LOCUS       DAZAND010000090         5996 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.091, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000090 DAZAND010000000
VERSION     DAZAND010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5996
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.091"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            38..1141
                     /gene="cmeA"
                     /locus_tag="ACHDOB_001495"
     CDS             38..1141
                     /gene="cmeA"
                     /locus_tag="ACHDOB_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HFN3326408.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMARATFENASKDFNRSKALFSKNAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTVGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETIQGKLYFIDSVIDANSGTVKAKAVFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQDQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            1141..4263
                     /gene="cmeB"
                     /locus_tag="ACHDOB_001496"
     CDS             1141..4263
                     /gene="cmeB"
                     /locus_tag="ACHDOB_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HFN3326409.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGVISLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNDDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALVLAIGIVVDDAIIVVENIDRILHENEQINVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLNKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAAANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            4256..5734
                     /gene="cmeC"
                     /locus_tag="ACHDOB_001497"
     CDS             4256..5734
                     /gene="cmeC"
                     /locus_tag="ACHDOB_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HFN3326410.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSSF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNT
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(5757..>5996)
                     /gene="cmeU"
                     /locus_tag="ACHDOB_001498"
     CDS             complement(5757..>5996)
                     /gene="cmeU"
                     /locus_tag="ACHDOB_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CmeU family protein"
                     /protein_id="HFN3326411.1"
                     /translation="KIVQNLNALFKQRAEFYSYFDENIAKINNTEVFDFKNAKNLNPE
                     EVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
BASE COUNT         2094 a          918 c         1032 g         1952 t
ORIGIN      
        1 tattacaatt tttaatttaa tttttcaagg caaaaccatg aaattatttc aaaaaaatac
       61 tattttagct ttaggtgttg tgcttttact cactgcttgt agcaaagaag aagcaccaaa
      121 aatacaaatg ccgcctcaac ctgtaacaac catgagtgct aaatctgaag atttaccact
      181 tagttttact taccctgcta aacttgtcag cgattatgat gtcattataa aacctcaagt
      241 tagtggcgta atagtaaata aactttttaa agctggggat aaggtaaaaa aaggacaaac
      301 attatttatt atagagcaag ataaatttaa agctagtgtt gattcggctt acggacaagc
      361 tttaatggct agagcaactt ttgaaaatgc aagcaaggat tttaatcgtt ctaaagctct
      421 ttttagtaaa aatgcaatct ctcaaaagga atacgactct tctcttgcta catttaacaa
      481 ttcaaaagct agtctagcaa gtgctagagc acaacttgca aatgcaagaa ttgatctaga
      541 tcataccgaa ataaaagctc cttttgatgg tactgtagga gatgctttag ttaatatagg
      601 agattatgta agtgcctcaa caactgaact agttagagtt acaaatttaa atcctattta
      661 cgcagatttc tttatttcag atacagataa gctaaattta gtccgcaata ctcaaagtgg
      721 aaaatgggac ttagacagca ttcatgcaaa tttaaatctt aatggagaaa ccattcaagg
      781 caaactttat tttattgatt cggttataga tgctaatagt ggaacagtaa aagccaaagc
      841 cgtatttgat aacaacaact caacactttt accaggtgct tttgcaacaa ttacttcaga
      901 aggttttata caaaaaaatg gctttaaagt gcctcaaata gctgttaaac aagatcaaaa
      961 tgatgtttat gttcttcttg ttaaaaatgg aaaagtagaa aaatcttctg tacatataag
     1021 ctaccaaaac aatgaatacg ccattattga caaaggattg caaaatggcg ataaaatcat
     1081 tttagataac tttaaaaaaa ttcaagttgg tagtgaagtt aaagaaattg gagcacaata
     1141 atgttttcta aattttttat cgaaagacct gtttttgctt cagttgttgc aattatcatt
     1201 tctttagctg gagtcataag tcttacaaat ttacctatag aacaatatcc ttctttaact
     1261 cctcctacag ttaaagtaag tgcaacttac acaggagctg atgcacaaac cattgcttca
     1321 acagttgcaa gtcctatcga agatgcaatc aatggcgcgg ataatatgat ttacatggat
     1381 tcaacttcaa gttcttcagg aactatgagt ttgactgtct attttgatat cggtacagat
     1441 cctgatcaag ccaccataga tgttaataat agaatttcag ccgcaactgc aaaaatgcca
     1501 gatgcagtta aaaaacttgg agtaacagtt agaaaaactt cctcaacaac acttgctgca
     1561 atttctatgt attcaagtga tggttcaatg agtgcagtag atgtatataa ctatatcact
     1621 ttaaatgtgt tagatgagtt aaaaagggtt ccaggagttg gagatgcaaa tgctatagga
     1681 aatcgtaatt attctttaag aatttggctc aagcctgatt tattaaataa atttggaatc
     1741 acagctactg atgtaatttc tgcggttaat gaccaaaatg cccaatacgc aactggtaaa
     1801 attggcgaag aacctgtaac tcaaaaatcc ccttatgttt attcaatcac tatgcaagga
     1861 agattgcaaa atcctagtga atttgaaaac attattttaa gaacaaatga tgatggatca
     1921 tttttaagac ttaaagatgt agctgatgtg gaaataggat cacaacaata cagctcacaa
     1981 ggacgattaa atggcaatga tgcagttccg attatgatca atcttcaatc aggggcaaac
     2041 gcattgcata cagcagaact tgttcaagct aaaatgcaag aactttcaaa aaatttccca
     2101 aaaggtttaa catataaaat tccttacgat acaacaaaat ttgtaataga atcaatcaaa
     2161 gaagttgtta aaacttttgt tgaagcttta attttagtta ttattgttat gtatatgttc
     2221 ttaaaaaatt tccgtgcaac ccttattcct atgatagctg tacctgtttc attgttagga
     2281 acttttgctg gactttatgt tttaggtttt agtattaacc tacttacgct ttttgctttg
     2341 gttttagcca tagggatcgt tgtagatgat gcgatcatag ttgtagaaaa tatcgatagg
     2401 attttacatg aaaatgaaca aataaacgta aaagatgctg ccattcaagc gatgcaagaa
     2461 gttagctctc cggttatttc aattgttctt gtgctttgtg ctgtttttgt accagtttct
     2521 tttatatcag gttttgttgg agaaattcaa agacaatttg ctcttacctt agctatatct
     2581 gtaactatat caggttttgt tgctcttacc ttaacacctt ctttatgcgc actctttttg
     2641 cgacgtaatg aaggagaacc atttaaattt gtaaagaaat ttaatgattt ttttgattgg
     2701 agcacctctg tatttagcgc aggagtagca tatattctaa aaagaaccat tcgttttgtt
     2761 ttaatttttt gtattatgct tggagcgatt ttttatctta ataaagctgt gccaaattct
     2821 ttagttcccg aagaagatca aggtttgatg attagtatta tcaaccttcc ttcagcttca
     2881 gcactccata gaacaatttc agaagttgat cacataagcc aagaagtttt aaaaactaat
     2941 ggagttaaag atgcaatggc tatgatagga tttgatcttt ttacaagttc actcaaagaa
     3001 aatgccgctg caatgtttat aggtttgcaa gactggaaag atagaaatgt aagtgctgat
     3061 caaattatag ccgaacttaa taaaaaattt gcttttgatc gcaatgcttc aagtgtattt
     3121 ataggcttac ctcctatacc tggattgagt atcacaggcg gttttgaaat gtatgttcaa
     3181 aacaaaagcg gaaaaagcta tgatgaaata caaaaagatg taaataaact tgttgctgcg
     3241 gccaaccaaa gaaaagaact atcaagagta agaacaacac ttgatacaac tttccctcaa
     3301 tacaagctta taattgatag agataaatta aaacactaca atcttaacat gcaagatgtt
     3361 tttaacacga tgaatgcaac tataggcact tattatgtta atgatttttc tatgctaggt
     3421 aaaaacttcc aagtaaatat ccgcgcaaaa ggtgatttta gaaatacaca agatgcatta
     3481 aaaaatattt ttgtaagatc aaatgatgga aaaatgatac cacttgattc tttcttaact
     3541 ttacaaagaa gttcagggcc tgatgatgta aaacgattca accttttccc agcggcacaa
     3601 gttcaaggtc aacccgcacc aggttatact tcaggtcaag ctatagaagc gattgctcaa
     3661 gtagcaaaag aaactttagg ggatgattat tccatagctt ggagtggatc agcttatcaa
     3721 gaagtttcta gtaaaggaac agcaagctat gcttttgctt taggtatgat atttgtcttt
     3781 ttaattctag ctgcccaata tgaaagatgg cttatacctt tagcagttgt aacagctgta
     3841 ccttttgcgg tatttggatc atttttattg gtatatttaa ggggatttag caatgacata
     3901 tattttcaaa caggactttt gctcttgatt ggactttcag ctaaaaatgc tatcttaata
     3961 gtagaatttg caatggaaga gcgctttaaa aaaggcaaag gagtttttga agcagctgtt
     4021 gcagcagcaa aacttcgttt tcgtcctatc ataatgactt ctttggcatt tacttttggg
     4081 gtcttgccaa tgattttcgc aacaggagca ggaagtgctt caagacactc tttaggaaca
     4141 gggcttattg gtggaatgat cgcagcatca actttagcga tattctttgt gcctttattt
     4201 ttctatcttt tagaaaattt taatgaatgg ctagataaaa aaagaggtaa ggttcatgaa
     4261 taaaataatt tcaattagtg ctatagcaag ttttactctt ttgatttcag cttgctcttt
     4321 aagtccaaat ttaaatattc ccgaagcaaa ctatagcatt gataataagc ttggagcctt
     4381 atcttgggaa aaagaaaaca atagctctat cacaaaaaat tggtggaaag actttgatga
     4441 tgaaaattta aataaagtgg ttgatttagc acttaaaaat aataatgatt taaaacttgc
     4501 cttcatacac atggaacaag ctgctgctca attaggtata gattttagca gtttgttgcc
     4561 aaaatttgat ggtagcgcaa gcggtagtcg tgcaaaaaca gctataaatg ctccaagcaa
     4621 tcgaaccggg gaagtaagtt acggtaatga ttttaaaatg gggcttaatt taagctatga
     4681 aatcgatctt tggggaaaat atcgcgatac atatcgcgcc tcaaaatcaa gctttaaagc
     4741 aagtgagtat gattatgaag ctgcaagact ttctgttatt tcaaatacag ttcaaactta
     4801 ttttaatctt gtaaatgctt atgaaaatga aaatgctctt aaagaagcct atgaatctgc
     4861 aaaagaaatt tataggatca atgatgaaaa atttcaagtt ggcgctgtag gtgaatatga
     4921 acttgctcaa gcaagagcca acttagaaag tatggcttta caatataatg aagcaaaatt
     4981 aaataaagaa aattacctta aagctttaaa aattttaact tcaaatgatt taaatgacat
     5041 actttacaaa aatcaaagct atcaagtttt taatcttaaa gaatttgaca ttccaactgg
     5101 aatttcaagc accatcttgc ttcaacgtcc agatattggc tcttctttag aaaaattaac
     5161 tcagcaaaat tatcttgttg gagtagctcg cacggctttc ttacctagcc tttctttaac
     5221 aggattattg ggatttgaaa gtggggattt agataccttg gttaaaggag gttctaagac
     5281 ttggaatata ggtggaaact ttactctgcc tatttttcat tggggtgaaa tttaccaaaa
     5341 tgtaaattta gctaaactta ataaagatga agcttttgta aattatcaaa atactttgat
     5401 tactgctttt ggagaaattc gctatgcttt agtagctaga aaaactatac gcttacaata
     5461 cgataatgca caagcaagcg aacaatctta taaaagaatc tatgaaattg ctaaagaacg
     5521 ctatgatata ggagaaatgt ctttgcaaga ttatttagag gcacgtcaaa attggcttaa
     5581 tgctgcggtt gcttttaata atactaaata ttcttatgcc aattccatag tagatgtaat
     5641 caaagcattt ggtggaggat ttgagcaaag tgaagatacg agtaaaaata taaaagaaga
     5701 atcaaaaaat ttagatatgt cttttagaga atagtttgtt ctattctcta aataaatcaa
     5761 aaatctttgt ctaaatctgc atctgtaatt tcataagcct tgtaaatagc aggcaataat
     5821 tttcttatag cataatcaaa atgataaaat tgcttatata cctcttctgg atttaaattt
     5881 ttagcattct taaaatcaaa tacttcagta ttattgattt tggcaatatt ttcatcaaaa
     5941 taagagtaaa actctgctct ttgtttaaac aaagcattta aattttgaac aatttt
//
LOCUS       DAZAND010000091         5971 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.092, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000091 DAZAND010000000
VERSION     DAZAND010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5971
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.092"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            70..834
                     /locus_tag="ACHDOB_001499"
     CDS             70..834
                     /locus_tag="ACHDOB_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HFN3326412.1"
                     /translation="MKVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSNDI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTHDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     TFEDALQNHHFTTQKNDMGGGIDEFSSKNLRNFQSF"
     gene            791..2662
                     /locus_tag="ACHDOB_001500"
     CDS             791..2662
                     /locus_tag="ACHDOB_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein A"
                     /protein_id="HFN3326413.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLY
                     HDIIKKYNHLSISYKKLVKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(2666..4303)
                     /locus_tag="ACHDOB_001501"
     CDS             complement(2666..4303)
                     /locus_tag="ACHDOB_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HFN3326414.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKEGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(4307..5191)
                     /locus_tag="ACHDOB_001502"
     CDS             complement(4307..5191)
                     /locus_tag="ACHDOB_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HFN3326415.1"
                     /translation="MISSSDWNLNTAATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            complement(5245..>5971)
                     /locus_tag="ACHDOB_001503"
     CDS             complement(5245..>5971)
                     /locus_tag="ACHDOB_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HFN3326416.1"
                     /translation="IVKDTQNLVSNLTQKDFNLNKEPKNNNKENKDIKQNFFDQKLNF
                     ENLNKTQVVQNKENNANFNNNTTNKETFTQEQTKTHSENVDKNSLDELNSLVKDLNKV
                     TQNNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVTLIQRGNNL
                     HINFNSNANAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQGKNRSGYGF
                     KDALDGKNESEKVNLELVLAKYF"
BASE COUNT         2150 a          992 c          797 g         2032 t
ORIGIN      
        1 tttataaaaa ctattatttt attctctaaa aatacgatat aaaaataatt tatatcgcaa
       61 ggaaaaaata tgaaagttaa atggagtaga gattttagca ttaaaaatat gcaattagac
      121 aaacaacacg aactaatttt tgaaattacc aatcttgcaa atgatttagc tctaaacatt
      181 caagataata atacacaaca caaaaatgat ttaaaacaaa ttcttgtaaa gctatttcaa
      241 tacatcaaaa ttcattttaa agatgaagaa aaatttatgg aaagcattga ttttcctttg
      301 attgaagaac ataaaaaatc tcatcaaata ttagtagaaa aaactaaaga gcttttagaa
      361 cactcaaatg atattgtaaa aatgtctcaa gaactttcca tattaaccaa agattggatt
      421 ttagatcatt ttgctaatga agatttatgg atagctaatt ttacaaaaaa aaccctacac
      481 cttcaagaaa tccattatac cttagaacaa tacataaaac taaaatcaat caaacaagac
      541 ctaagggctg aaaaaactca tgattatatt tgcaattgtt ctttgcgtat ccatgcagtt
      601 ccacagacta tacatcaaga gcttgttagc aaagaaaata ccttaaagtg cgaaaaatgt
      661 gggcaaattt tagttcattt ggattatttt gatttgaatc aaaatttcga aaaattcaat
      721 gctacttttg aagatgcact acaaaatcac catttcacga ctcaaaaaaa tgatatgggg
      781 ggggggatag atgaattttc aagtaaaaac cttagaaact ttcaatcctt ttgaaagttt
      841 aaatcatgaa caagcaaaca cagaacaaat tcttgatttt agagttatag attttaaact
      901 tctgtgttct agtgtaaaac cagcaaaaac aaaaacttat gaaagaaagg attttgactt
      961 attttatgca gatgattttt ttgtaaaaaa ctacaatacc atagtgcaaa aatttcttat
     1021 agaaatttac ccaaaaaccc aaagttttcc ttttacagtc aaacttagat ccaactccaa
     1081 cctaacccat ctaaaagcca gtatcaacct tacagaaaat tttaaatatt accctaattt
     1141 aaaatttgat attttgcaaa atatctacaa aataatgatc aaacaaaaat ttttaatctt
     1201 aagacttgat aaaaatttat ttgacaagat tgatgatttt atcttatcaa tacaaaaaag
     1261 tccatctatt aaagaaatag agcttgaaat tgccaaaggt gtagataaga ttgaacataa
     1321 aagtgatgaa attatttatc atagagatgt taacgaagaa tgttttgacg aaaatattaa
     1381 ctatgatgaa ggaaactact gtaaacctat tgaaaaaaat gagctacttt ttgaatacat
     1441 ttatagaatt cttggaaaag aaggacgaaa tttaagagga gagatacttc atttaaatcc
     1501 aatagccttt cttgataatc cttttatcat aaaagatgaa agcatttaca cagaagaatt
     1561 agaagataga attaaatatt ttagcgccaa ttatggattt ttaaacaaag atcatacagg
     1621 atattgtatc gcaaataatt taaaattatc acaaataggg cttaaaacaa ccggttcaat
     1681 caaaacaaat accgatgaaa atataaactt agaaatcact aattttgata taagtgatga
     1741 tgctattaaa tcaggtattg taaatgttca agcttcaaat ataaaagtaa atgggaatgt
     1801 tggagcaaca aaactttatg gaaaaaatat cagtatcaaa ggcttaactc atgcaaaaag
     1861 cgaaattttt gcacaagata tttttattac aacacacaaa ggaactttgc aagctgacac
     1921 tgtatatata aaaaatttag aaaatgggac aattatagct aaaaatgtat ttgttgaaaa
     1981 ctgcatgggt ggaaaaatag aagcagaaaa tatttatatt tgcaatttac taacggataa
     2041 tactttatat ccaagaaaaa atctaatcat aacaaacaat ataaaattca aaaacaatat
     2101 cgtagtttca ccactagttt ctattgaaaa caactcagat acagaatgcg aaaatcttaa
     2161 aaatctaagc cttaaaataa aaagtaagct tgatgacacc ataagcaaaa tgcaaaatta
     2221 ctatgattat ctaatcaaaa atcaaatcaa aatcatcaaa cttcaaaaga ctaaaaatcc
     2281 tagcgccata gaaatgaaat tttcaaatct ttatcacgat atcataaaaa aatacaatca
     2341 tcttagcatt tcgtataaaa aacttgtaaa attaaaatat caaattgatg cgaaattaaa
     2401 tttcttaaat gaaatggttt acaatgtaaa aatatacata aaagccgaaa atatcggaga
     2461 ggataatttt ttaaaatttt atcctaacac aaacaccaac cttgaactaa aacatcatat
     2521 aaatttaaaa gactatgaaa aggttttata tcttgaaaaa ggacagcaag taagttatat
     2581 taaatcaagc cataattata gcgaaagcga catagaagaa attaaaatta tttttgaaaa
     2641 attagaaaaa gataattcct aagaattatc ttttcatatt aatggctttt tgtatcatct
     2701 gatcacttgt agtgatactt tttgagcttg catcaaaggc tttttgagtt acgataaggt
     2761 ttgaaagctc tgcgcttaaa tcaacatttg attgttctaa gaatccgcct ttaaatttag
     2821 ctgtattaac aacttgacca tctttcataa taaaacttgc atcaccgcta tttgccgttg
     2881 ctgcaaaaat attatctccc atagcaacta atccttgctc attgataaaa ttatataaag
     2941 caagctttcc aactatggca tttttaccat tgctaaattg cgcaacaata cttccatcat
     3001 cggatatatt atattgttca aaaaaccctt cagctacacc atcttgttgt gtaactacat
     3061 ttttttcgac gccttcttta atataaatcc cactataacc cgaaccaggc ttgttagcat
     3121 cataaggaga acctaaatca atattaattg ttccaccatt tggatttgca atgcttgtaa
     3181 tattgttttg aagcaaagca ccatttttat caaaaaccat atttccttca gtcggattgc
     3241 ctacggcatt gccattagaa tcataaattt gtgcaatagc tttatattgt atattatcgc
     3301 cttcttgcgg taaaactctt tcaagtgtaa cccttaaagt gcttttactt ccatctgcat
     3361 tataaatagg ggattctaaa atatctttat tggctttttg ttgctctgtt gaaatttgag
     3421 ctgtatcaag cttgatgcta ttttcatcca atccttttaa atcaagctcg ttacttttaa
     3481 aatttagatt ttcatctaaa gtcgcttcaa agcttgtttt tacgccatta tcatcagtga
     3541 aatttaaaat aatcctatca cccgctttag cactaaacac atcttctttg ctaacactac
     3601 cactaactac atattttcca tcttcagttt ttgtaatgtt aaatttacta ggatcaagat
     3661 ctactttaac tacttctgtt gttgtgttag tatttaaact tccactccat tttacatttt
     3721 gagttacttg aggaggtaaa tacatattca caggtacttt aatagcccct tgagaagcgg
     3781 ttgtgcctat actgaaagaa ttatttgaat ttacagtaaa accattattt accggagttc
     3841 ctgtgttaag ataatccccc ataagcccag caactctatc gctatagtta ataccagtaa
     3901 aagcaggatt cattgttcct aaaacaaaat ttccataaga atctaccaaa tatccattgg
     3961 catctcttct aaatgatcca tttctagtat agtaagcatt gccatcagcc cctaaaaccc
     4021 caaaaaatcc ttttccttgc aaagccacat caaattcgcc atcacttgca acaggagaac
     4081 cctgttcgaa aacaacttga gaagatgctg caccgctacc ataaccacct tgagcagggt
     4141 tggttgattg ggttgttatg gtagtataaa aaatatcttt aaattgagca tcagagtatt
     4201 taaagcccgt ggtattgaca tttgctatgt tattagcagt gatatcaata ccaaagctat
     4261 tgctttttac tccagaaatc ccattataaa atgaattcat catggcttat gccttttcct
     4321 ctttgtcgcc atcttctgta gatccagacc cagaagaatc tccatcgctt gaaccaccac
     4381 ttgagtctcc acttgaaccg cttcctccag tagatgaaga tgaaccaagc ttataatctg
     4441 ttatttcttg tattgcatca aaaggaactt cttgtccagc catttttgca taggcaacac
     4501 catctttaaa aacaacacct tcgataggat aagttccgta atttgcagtg attttttcac
     4561 catttttatt attataaacc attttaacag tgtactcacc atcacctgca taaaccccat
     4621 cgttatttct tcctggccac tccatagtaa ataaaccttg agaaatagat ttagcatcgc
     4681 ttttttcact gaaaacaagt ttattattgc tatcataaat ttctagcgta acaccgtttt
     4741 catcagaatc ttcaggcaaa tacattttaa gagcgataag ctcatctgca cctgtaagtt
     4801 tgattttatt atctgaaaca gttgccattt taccaatagc ccctaaagct gaagtactca
     4861 tacttgtact aaaagaatca gaaagctttt gcatagtttc aaccattttt tgcatagttg
     4921 tattggtatt ttgctgcatt tcaagtgcgc taagctgcga agtttgagta agcattttat
     4981 cgctatccat aggatctgtt ggatcttgat gttgaagctc tatcaaaaga agttttaaaa
     5041 acgcatcctt atctaaggta gcgtttggat tgctcactat tcctgagcta ctgcttgaat
     5101 ctgttctagt tgttccacta gtacttcctg aagaagtagt acctgaagtt gtagcagcag
     5161 tatttaaatt ccaatccgat gatgatatca ttataaactc ctttttattt agttttttat
     5221 tatttaagca ataagtgttc caacttagaa atacttcgct aaaacaagct ctagattgac
     5281 tttttcactt tcattttttc catctaaagc atctttaaaa ccatatccac tacgattttt
     5341 tccttgattt tgattttgct ctcttttgcc ttgatcacta aaattcattt caagtccagt
     5401 aaatcccata tttacaagag aatttttaaa ctcggcttga ttttggataa acaaattcat
     5461 tgcattggca ttggagttga aattgatatg aaggttatta cctctttgta tcaaagttac
     5521 ctccacttct ccaagattat taggatttag agtgatacta agtttagtaa taggcgcttt
     5581 gtattgatcc acagcctctt ttaaatcttg tgaaaaatac tgcaaagttt ctttaggagt
     5641 gatattgcga gcattgtttt gtgttacttt atttaaatct ttaactaaag aatttaactc
     5701 atctaagcta tttttatcta cattttcact gtgcgttttt gtttgctctt gagtaaaagt
     5761 ttctttatta gtagtattat tattaaaatt tgcattattc tctttgtttt gaactacttg
     5821 agttttattt aaattttcaa aatttaattt ttgatcaaag aaattttgtt ttatatcttt
     5881 attttctttg ttgttgtttt taggctcttt atttagatta aaatcttttt gtgttaaatt
     5941 ggaaactaaa ttctgagtat ctttgacaat t
//
LOCUS       DAZAND010000092         5805 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.093, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000092 DAZAND010000000
VERSION     DAZAND010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5805
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.093"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            93..950
                     /gene="cheP"
                     /locus_tag="ACHDOB_001504"
     CDS             93..950
                     /gene="cheP"
                     /locus_tag="ACHDOB_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HFN3326417.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGIGNIINIVTADSIRDSFKID
                     VSPYGLDTQNFLKTCNEEATFITNWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REEVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLEEAKTQGINFDLNNLLSKLPSK
                     AKENLNKED"
     gene            978..1457
                     /gene="cheQ"
                     /locus_tag="ACHDOB_001505"
     CDS             978..1457
                     /gene="cheQ"
                     /locus_tag="ACHDOB_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HFN3326418.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(1426..2736)
                     /locus_tag="ACHDOB_001506"
     CDS             complement(1426..2736)
                     /locus_tag="ACHDOB_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3326419.1"
                     /translation="MSKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVLLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGIIKSCVFFSVFFGIVSLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALDNLSNFWRFSLGIYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(2739..2894)
                     /locus_tag="ACHDOB_001507"
     CDS             complement(2739..2894)
                     /locus_tag="ACHDOB_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HFN3326420.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYPQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMD"
     gene            2987..3460
                     /gene="moaC"
                     /locus_tag="ACHDOB_001508"
     CDS             2987..3460
                     /gene="moaC"
                     /locus_tag="ACHDOB_001508"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061799 - cyclic pyranopterin
                     monophosphate synthase activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HFN3326421.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITSRIATASGMIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKVETDIMEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDILLESKEGGKSGKFVRS"
     gene            3438..3701
                     /locus_tag="ACHDOB_001509"
     CDS             3438..3701
                     /locus_tag="ACHDOB_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 family protein"
                     /protein_id="HFN3326422.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHVKASEIFQEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            3691..4851
                     /locus_tag="ACHDOB_001510"
     CDS             3691..4851
                     /locus_tag="ACHDOB_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326423.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLSKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYEYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(4870..5628)
                     /locus_tag="ACHDOB_001511"
     CDS             complement(4870..5628)
                     /locus_tag="ACHDOB_001511"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HFN3326424.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFDSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
BASE COUNT         2168 a          806 c          853 g         1978 t
ORIGIN      
        1 atatcttaaa gtaacaaaaa atgtaataag taaattaaaa tttagatata atcataaatt
       61 ataataatac taacttcaag gataaatcaa atatgattgg agatatgaat gagcttttat
      121 taaaaagcgt tgaagtattg ccacctttac ccgatactgt aagtaagtta agaaaatatg
      181 tgagcgaggc taattcaaat atagaaacca tgaaagttgc tgaaatcatt tcaagtgatc
      241 cgttgatgac ggctaagctt ttgcaattag caaattctcc ttattatggt tttacaaggg
      301 aaattacaac cataaatcaa gtgattactt tattaggcat tggcaatatt atcaatatag
      361 ttacggctga ttccattaga gatagtttta aaatagatgt ttcaccttat ggtttggata
      421 cacaaaattt tttaaaaact tgcaacgaag aggcaacttt tatcacaaat tggcttaatg
      481 atgaagataa aaaactttct catcttttag ttccttgcgc aatgctttta aggcttggta
      541 ttgttatttt ttcaaatttt cttatacaaa atcataagga taaggatttt ttagcttttt
      601 taaataaaaa tgaaaatctt gctttagcgg agaatgaatt tttaggcgta gatcatattt
      661 ctttcttggg atttttgtta catcgttgga attttgatga tgttttgatt gaaagtatat
      721 gttttgttcg cactcctcat gctgctcgtg aagaagtgaa aaaatccgct tatgctttag
      781 caataacaga tcatcttttt gctccgcatg atggctcttc tccatttaac gcaaaagctg
      841 cagttgcttt acttgaagag gcaaaaactc aaggaattaa ttttgattta aacaatcttt
      901 tatctaagct tcctagcaaa gctaaggaaa atttaaacaa agaagattaa agagcctttt
      961 tagggctcta aattgtagtg atgaaaagtt taatcttacc tcctaatgaa tttttagatc
     1021 actatatttt aaatgccgaa tttcatcgtt ttgctggaat ttcaaaaaat gcttataaat
     1081 tttggaaaaa tgtagaaata ggcagatatc aaggaacaag aattatattt ttgcatagaa
     1141 attgcatttt agaaaaacat cagcaagctt taaggcaatg tagtggttta aatggttttg
     1201 tattggcaag tgctttttgt tcttttactg gattagcccc ctctcattta gtggaaaaaa
     1261 ataattcttc tatttacaaa cttttagagc ttaaggagat ttgtgggatt aaatttgtta
     1321 atctaaaaaa attttatgat tttttagggc taaattatca tcagcatatt tatatagaaa
     1381 aatgccattt ttttagccca gctccttttg aaaagcgtat taaaatcact gagagtatgt
     1441 gcgttgggta ttattaagat aagaaaaaat aaatgcacat agcaaagcta taatagccaa
     1501 aaagaaaaca taaattccca aagaaaaacg ccaaaaatta cttaaattat ctaaggcaaa
     1561 actatgcaag aaaaaagcaa gttgcggagt taaacctcca gctatagcat aagcaatatt
     1621 atatgaaaaa gaaagtcctg aaaatttaat ttttgcatca aatacttcac tcattattaa
     1681 agggcaaaaa ttcatcactc cgctaaaaaa acacacaagt aaatataagc aagctactag
     1741 gttaaaatca gcattttgtc tatatagagt attaaaataa agcaagctta caattccaaa
     1801 aaaaacacta aaaaatacac aagatttgat aatgcctatt ttatccgcta aaattccact
     1861 tataatacac cctaggcaaa taagtaaaat tccacctatt tgaagatagg tttgtataga
     1921 agtgttaatt tgaagtattt ttgccatata gctaggcata agcaaaatca ttacaacaat
     1981 gcaacctgtc aaaacccaag taatcatcat agaaagaaca attcccattt tagctttttt
     2041 aaacacttct tttaaaggaa atttttctaa agccttgtct tttttcattt gttcaaaaac
     2101 aggagtttct cttaaaaatt ttctcaaata agcagaaata atcccgaaaa ttccacctaa
     2161 aaagaatgga attctccaag cccattcatg aagttcttct tgggtataaa ttttattcat
     2221 aattaaaaaa actaaactac ctaataaaat tccacctaca accgaagcgg ttaaaattcc
     2281 caaataagtt cttttttgac cttgtggtgc gtgttcgtat acaaaaaccc aagctccagg
     2341 aagttccccg cctatagcaa tgccttgaca aatgcgtata aaaactaaaa gcacaataca
     2401 aagaaaacct atgctttcat aatttggaat aaaagctaga gtaaaagttg gaataaccat
     2461 taacaaaata ctaatcataa acattctttt gcgtccaaat ttatctccaa aatgtgccag
     2521 tatcacaccc cctaagggac gcgctaaata tccagccgca aatattccat aagtattaaa
     2581 catttgccaa aaactactta aatcttttgg aaaaaagttt gttgaaatat aatttgcaaa
     2641 aaatacaaaa ataataaaat cataaaattc taaagttcca cctaatgatg aaagtcctaa
     2701 aacttttata tctttttggt taagggtttt gctcattctt aatccatctc ataaaaatca
     2761 tcatcattgt tatcatcatc gtattcataa tcatcatcat cgtaattata atttttatgg
     2821 tgattttgtg gatattcttc atcttcgttt tcataatcat cgtaatttaa atcttcttca
     2881 tcttcataag ccattgtttt ctccttaaat aaaaatacaa agcttatttt atcttaaatt
     2941 tgtttggttt tgctataatt tttataattt tttaaaaggt gaatttatga aattaagtca
     3001 tttagatgaa aaaaatcatc ctaaaatggt agatgtaagc gataaaaata ttacttcaag
     3061 aatagccaca gctagtggta tgatatatat gagtcaagaa gcttttgatg taattaaaaa
     3121 caataccgca aaaaaaggtc ctgttcttca aacagctatt attgcggcta taatgggggc
     3181 taaaaaaaca agtgaaatta ttcctatgtg ccatccttta atgctttcta aagtcgaaac
     3241 tgatattatg gaatttgtta aagaatgtgc atttaagctt attgtaacag ttaagtgtga
     3301 aggtaaaaca ggggttgaaa tggaagcttt aagtggggtt agtataggac ttttaactat
     3361 atatgatatg attaaggcta tagataaatc aatgaggatt acggatatat tgcttgaaag
     3421 caaagaagga ggcaaaagtg gtaaatttgt gcgatcttaa aaaagaaccc cagatcaatt
     3481 atcctacttt ttgggattat aaggtgattt ttgaggtgca tgttaaggca agtgaaattt
     3541 ttcaagaaat tttaggccaa agagaatata aatttgaaca ttcgaattca agtgcgagtg
     3601 gaaaatatca aagttattta ttaaatgttt atgttgatag caaaaaagat cgtttggata
     3661 tatttgataa attaaaagct aaagcaaaat ttgtacttta agaaagaagg aaaaatgaaa
     3721 aatactttaa ttatttttga aaattcttta tcaaatctca gtaaagatga agcaagtgat
     3781 ttacttgaag acttgagttt taatcttgca tataagcaaa tttcgcataa tcctcatgaa
     3841 acaaaaaaag ttttaaattc tcttttggtt gaatttttaa ctattttgaa aaaacttgat
     3901 ttttttgatg atgaaaatgt tacaaaggtt atcaaagctt tggttaaggc gagtattgta
     3961 gatgctcaaa attcgcttta tgagtatatt agcgaagctg aattattaaa caaacagatt
     4021 gaaaatcaaa aaaatttgat taaaaatcaa atcagtgata atttttttga attcgagaat
     4081 attttacaag aatgttcttt ttgtgatgaa tttagcggtg gtttaaatga tgctatttta
     4141 tttgatatag aaatgcttgg aattttaaaa gaaaccgctg aaagtgcttt tttaactaca
     4201 ttagaaaagg ctgaagatat agaacttaca agtagtgaaa tagctaaaaa tctcgtatat
     4261 aatgccattt gtgaagctca ttttgaaaaa gaaagaattt taaaaatttc aagtattatt
     4321 ttaaatactg cttttgaaat agccaatgaa tctatggctt atgcaaaaga tctttgctta
     4381 ggtgtgatta aaggcacaag agatggtatt gttttggcaa tggaaaaatt taaagcttca
     4441 ttaacttatg caaattttga agaagatgtt agtttaaaaa gcaaagaact aataggtata
     4501 gaagatgatt ttattgctct tttaaaaaaa gagattcaac tacaaaatga tccttgtaag
     4561 agtatagttg agaatttact agaacatgaa cttgataatc tttttgctaa atttagacgt
     4621 cttgcaggtg aaagcagaga gcaactaata ttagttttaa atgatattaa gaaaaatcca
     4681 aagattaatg attttaataa acttactcaa agaaaattaa atcgttttaa acaagaaatt
     4741 tttgaattag aaaaaattgc tagtgaaaaa tacaaagatt taaattctaa aaaagctaaa
     4801 aagctcggtg taagactttg ggaaaaagca aaaaaatttg ttaaaaaata atatcccatt
     4861 tttgggatat taaatatcta tttctatacc tacaggtgcg tgatcagagc caaaaatatc
     4921 atctcttatg aaagcgtttt taagtttatc ttttaaaccc tttgaaatga aaaaataatc
     4981 aatcctccag cctacatttc tttctcttgc tttcattcta tagctccacc acgagtattt
     5041 ttctttgatt tcgccattaa tttctctaaa agtatctata aaaccaagtt ttagcaaatc
     5101 atcaatccaa gctctttcta taggtaaaaa acctgaagta ttggcattgg cttttgggtg
     5161 ggtaagatcg atttctttat gagcggtatt gacatcaccg caaatgataa tttcaaaccc
     5221 atcctttaaa agtttatcca aatatactaa aaaatctgca taaaatttca tcttaaaatt
     5281 taaacgctct tcatcttttt gaccatttgg aaaatagata ttaaaaagtg cgatattttt
     5341 aaaacggtgt tctaaaaccc taccttcttc atcatcaaaa aattcgcatt tttttacttc
     5401 gctatcaaaa ttacaaagac tcattacccc agaatacccc gctcttttag cagaattaaa
     5461 atacatgtgt ttaaaaggat attcataaat ttttttagga aatttatctt catgtgcttt
     5521 gatttcttga aaacctataa aatcaatttg ttcttgtgct atccaatcaa gtgcattttt
     5581 atcacaaata gctcttaagc cattgacatt ccatgaaagt agtttcatta ttttccttaa
     5641 aattttcatt aaaagtgtaa atcataacat aaaaagattt caaactacaa tccatttaaa
     5701 aaaattcaat aaaattaaaa gcttaaattt ggaggtggga tttatatgct tagattaact
     5761 tggcttcagt ttactttttt taattctttg atgattgtat tgttg
//
LOCUS       DAZAND010000093         5697 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.094, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000093 DAZAND010000000
VERSION     DAZAND010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5697
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.094"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..433
                     /locus_tag="ACHDOB_001512"
     CDS             <1..433
                     /locus_tag="ACHDOB_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326425.1"
                     /translation="IYIISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEV
                     PKTQVPGVEKIPTPSVPNLEAKQVEQLFKDSDEENKNDNGEINIDNLNTPKMTPDIEE
                     KIKRDLIANPPQIFKENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(430..939)
                     /gene="lolA"
                     /locus_tag="ACHDOB_001513"
     CDS             complement(430..939)
                     /gene="lolA"
                     /locus_tag="ACHDOB_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LolA-like outer membrane lipoprotein chaperone"
                     /protein_id="HFN3326426.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSDFIQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDVFKAK
                     IPQNYDIVR"
     gene            1040..3628
                     /gene="secA"
                     /locus_tag="ACHDOB_001514"
     CDS             1040..3628
                     /gene="secA"
                     /locus_tag="ACHDOB_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HFN3326427.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYFKRVAQINALEGKYQNLSDDELK
                     AEFAKFKEQILSGEKNENDILNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVILS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKVEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANSKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKNIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMSRLGIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEVQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3625..4830
                     /locus_tag="ACHDOB_001515"
     CDS             3625..4830
                     /locus_tag="ACHDOB_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3326428.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYISTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALRDENLSGFDILVGSALIDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGMPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPADVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            4853..5638
                     /locus_tag="ACHDOB_001516"
     CDS             4853..5638
                     /locus_tag="ACHDOB_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN3326429.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSVIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELIRGTPLLVQVLLMYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLILTLPISIFSRYLERKCQK"
BASE COUNT         1992 a          694 c         1052 g         1959 t
ORIGIN      
        1 tatatatatc atatctttaa gcggagtgga aaaatttgat ttagaggagt ttaaacgctt
       61 tttagaaagc actgaggcta aagagaaagg tatgggcagc gaggtaaaaa aagcacttga
      121 aaacttagaa gttcctaaaa ctcaagttcc tggtgttgaa aagatcccaa ctcctagtgt
      181 tccaaattta gaagccaagc aagttgaaca gcttttcaaa gattcagatg aagaaaataa
      241 aaatgacaat ggagaaatca atatagataa tttaaataca cctaaaatga ctccagatat
      301 agaagaaaaa attaaaagag atttaatcgc caatcctcca caaatattca aagaaaataa
      361 tgcaagcaag ccttatcatt tgccacaaac aggctatgat ataaagcttg atgaaaattc
      421 aacgcaaaat tagcgaacta tatcataatt ttgcggaatt tttgccttaa aaacatcgga
      481 attaattttt ggatttttaa tttgattgtt tagattgatt ataacatcat tttcaaattc
      541 atctttatag gatatgcttt gaatttgctc ttgattaagc ttaattgtat agtttatatt
      601 atcatatttt gctacaagtt tatctttgtc tataagactt gcttttttga aaatttcatt
      661 aagatttgga atgttatcaa gatgagagaa aatgacttgt tctagatcgt gctctactat
      721 ggttacttga tttttgttaa tataaatctc ttttttacta ggagtatcat aactccaata
      781 tgcttgatcc ttactcagta taaaatgtcc agaataagaa agtgtagagt ttttggattt
      841 tactatttgg ataaaatcgc ttgaaaaggt attaaaatta agatcaaggg caaaaagttg
      901 tcctataaaa ataaaaaata tcaagaatgt ttttttcatt tattttcctt aaaaaaatta
      961 tattttttat atcattctag ctaattttaa ttaaataatc gttataataa tagtttgaaa
     1021 aatttataaa ggtttaaaaa tgtttttaaa taccttaaaa gccgtttttg gaacaaaaaa
     1081 tgatcgtgaa gttaaaaaat actttaagcg tgtagcacaa atcaatgctt tagaaggcaa
     1141 atatcaaaat ttaagcgatg atgaattaaa agccgaattt gcaaaattta aagagcaaat
     1201 tttaagcgga gaaaaaaacg aaaatgatat cttaaatgat gtttttgcta tagtcagaga
     1261 gacaggtaag agaactttaa atatgcgtca ttttgatgtg cagttaatcg gtggtatggt
     1321 tttgcacgat ggaaaaattg cagaaatgaa aacaggggag ggtaaaaccc ttgtagcgac
     1381 cttgcctgtt gttttaaatg ccatgagtgg aaaaggcgta catgtcgtta cagtaaatga
     1441 ttatctagcc aaaagagacg ctgagcaaat gagtgcgatt tataactttt taggttttag
     1501 tgtaggcgtg attctttctt ctcaaaacag tgacatagag cacaagcaag cttatgattg
     1561 cgatattact tatggaacca ataatgagtt tggttttgat tatttgcgtg ataatatgaa
     1621 attttcaaaa gttgaaaaag ttcaaagaga gcataatttt gttattgtag atgaagtaga
     1681 tagtatttta attgatgagg caagaactcc gcttatcatc agcggtccta caaatcgcac
     1741 tttagatggt tatattaaag ccaatgaagt agccaagcaa atgcaaaaag gcgaagcagt
     1801 tttaccccct gcaaaacctg agggtgattt tgtagtagat gagaaaaatc gtaatatttt
     1861 aatcacggaa gcaggtattg ctaaggctga aaaacttttt ggtgtagaaa atttatacag
     1921 tcttgataat gctatcttag cacatcagct tgatcaagct ttaaaggcgc ataatctttt
     1981 tgaaaaagat gtgcattatg ttttaagaaa taatgaagtt atcatcgttg atgaatttac
     2041 agggcgttta agtgaagggc gtcgttttag cgaaggattg catcaagctt tagaagccaa
     2101 agaaaatgta aaaattcaag aagaaagcca aactttagca gatattactt ttcaaaatta
     2161 ttttagaatg tataacaaac tcgcaggtat gacaggaact gcacaaacag aagcgactga
     2221 attttctcaa atttatagtt tagatgttat ttctataccg acaaatattc ctattaaaag
     2281 acaagataaa gatgatctta tctataaaac tcaaaatgaa aaatttaaag ctgtaattga
     2341 agagatcaaa aaagccaact ctaaaggtca gcctgttctt gtgggaactg caagtataga
     2401 acgcagtgaa gtttttcaca atatgcttgt aaaagaaaaa atccctcatc atgttttaaa
     2461 tgctaaaaac cacgagcaag aagctttgat tatccaagat gcaggtaaaa aaggtgctgt
     2521 aactatcgct acaaatatgg caggtcgtgg tgtggatata aaaatcgatg atgagattag
     2581 ggctttgggt gggctttata tcatcggtac agaaagacat gaaagccgcc gtattgataa
     2641 tcaacttcgt ggtcgtgcag gaaggcaggg cgatcctgga ataagtcgtt tttatctaag
     2701 tttagaagat aatcttttaa gaatttttgg cggggatcgt attaaaaata ttatggatcg
     2761 cttgggcata gaagagggcg aaagcataga gtcaagaatt gttacaagag cggttgaaaa
     2821 tgcgcaaaaa aaagtagaaa gcttacattt tgaaagcaga aagcatttgt tagaatacga
     2881 tgatgtagca aatgaacaaa gaaaaactat ttatcgttat cgcaatgagc ttttagatga
     2941 aaactatgat attagagcta aaatttctca aaatatcgct gaatatagtg caaatgtaat
     3001 gaatgattat atgcttgatg aaagcggttc taatgtaaat tttgaaaatt tgaaagcaaa
     3061 aattttatat gaatgttcaa ctcagattag tgaaaaagat tttgagaatt taagcgtcat
     3121 tgaaatgcaa gataagctaa gtcaaattct tgaaaattct tataacgaaa agatgtcaag
     3181 acttgggatt aaagaattgc gtaatataga gcgtatttta tatttgcaag ttttggataa
     3241 tgcttggaga gagcatttgt atcaaatgga tattttaaaa acaggaatag ggcttcgtgg
     3301 atacaatcaa aaagatcctc ttgtggaata taagaaagaa agttataatc ttttcttgga
     3361 gttggttaat cgtattaaat ttgatagtat taagctactt tttagcgtgc aatttaatca
     3421 agaagaggtg caaaatttag aaaataaagc caatgaagaa aatgaaaagc tacttcaaag
     3481 ctcagtagaa atgggcgcaa gcgaagataa tcttggcgaa gctgagttta aaaaagttcc
     3541 acgcaatgct ccttgtcctt gcggaagtgg aaaaaaattt aaagaatgcc atggaaaaag
     3601 tggtcctaag caaggaattt tagcttgaat aaaagcgttt taaaatattt actttttaaa
     3661 tatttaagat ttgataaaga acaacccttt atcaatcttt ctatgctttt ggccttttta
     3721 ggagtttgtg taggactttg cgttttgctt gtagctatgg caattatgaa tggttttgat
     3781 aaagaatttg aaaaacgctt ttttgtgatg aattatccta ttactatttt gcctaaattt
     3841 tacgctcctg taaatgatga atttatagat gagttaagaa aaacatttcc aaatttgtta
     3901 tttagccctt atataagcac tcaagttgtt gtaaagggag ataatcgttt tgaaggtggt
     3961 gtgctttttg gcgttaattt taatgatgaa aaaaaaataa acgaagtggt tgctaaagct
     4021 ttaagggatg agaatttaag tggttttgat atacttgtag gatcagcact tattgatgaa
     4081 tttggtttgc ataaaaatga caaactttca cttatttttt caaatcttaa tcctagtgga
     4141 ttttctttag taccacaaac taaacgtttt gatgttaaag cgcgttttac ttcagggctt
     4201 gcattttatg ataaagctta tatgtataca gatgttgatg cattgaagaa agtacttgga
     4261 atgcctaaaa atccaaatta tgatggaatt catgtatata gcgataatgc ttttaaggat
     4321 gttgaaaaaa ttaaatctta tttaaaagat gattatgctg tagtaggttg gtgggaacaa
     4381 aataaaaatt tcttttcagc tttagagctt gagaaaagag cgctttttat agtgttgatg
     4441 cttattattt tggttgcaag tttaaatata gtaagttctt tattgatgat agtgatgaat
     4501 cgtcgcagtg aaatagcact tttacttgcc ctaggtgcaa gcaaaaatga ggtaaaaaag
     4561 agtttttttg ccttaggtat gcttattggt ggtggcggta tgatagtggg tgtggtgctt
     4621 gcattttttg ctttatggct tttaggaaat tttgatattg taactttacc tgctgatgtt
     4681 tatggaacca gtaaattacc acttgatttg tctttaatgg atttttcttt aaccattgtg
     4741 ggtgctttaa taatcatagc tttatcatct ttttatcctg caaaaaaagc aactcaaatt
     4801 aatattttag atactttaag aaatgaataa attgtaattt tggagatttt tattgtcttt
     4861 gtttactcaa aaaaataaga attttaaacc tttaaaacct ctatcaaagt caaaaataat
     4921 cactaattta attcttttga ttttattttt aatattgttt tgttattgta gttttagtat
     4981 aagtgcttat cattttgatt ttagcgtaat tgcgacctat aaagaaaaat ttcttcaagg
     5041 ttttttaaat actttaataa tcagtttttt ttctttatta ctgagtataa ttttgggtgg
     5101 agttttttgt gctttttctt taagttcaat tgttttttta agatttttat ctacatttta
     5161 catagagctt atcagaggaa cccctttact agtgcaggta ttattgatgt attatatcat
     5221 tgcaaataat ttaggacttg ataatcgata tgtggctgga gttattattt tatcatgttt
     5281 ttctgctgct tacttagctg aaatatttag agctggaatt ttaagtattt ctatatctca
     5341 gcttgagagc gctagggctt tagggttaaa agagatgcag gtttttgcgt atgtaatttt
     5401 tccccaagct ttaaaaaata ttttagcacc gctgagtgga caatttgcaa atttaattaa
     5461 agatagttcc ttattaagtg ttattgctgt aaatgaatta acccaaagtg cgcaagagat
     5521 aaattcttat acttttgcta ctcttgaagc ttatgtaatt ttggctatta catatcttat
     5581 tttgacttta cctataagta tattttctcg ttatttggag agaaaatgcc aaaaatgatt
     5641 taaaaaagct tgacaaatag agctaatttt ggcataatca catttttatt tcagaaa
//
LOCUS       DAZAND010000094         5516 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.095, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000094 DAZAND010000000
VERSION     DAZAND010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5516
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.095"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..400
                     /locus_tag="ACHDOB_001517"
     CDS             <1..400
                     /locus_tag="ACHDOB_001517"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HFN3326430.1"
                     /translation="MTNILILEYKNENTLELFEAFADESEHLKYCVNFEVDREEYKKF
                     RQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSEIRQKYLILVKLYHPDFHQGK
                     SAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(425..3442)
                     /gene="cmeF"
                     /locus_tag="ACHDOB_001518"
     CDS             complement(425..3442)
                     /gene="cmeF"
                     /locus_tag="ACHDOB_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HFN3326431.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKVNGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(3445..4185)
                     /gene="cmeE"
                     /locus_tag="ACHDOB_001519"
     CDS             complement(3445..4185)
                     /gene="cmeE"
                     /locus_tag="ACHDOB_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HFN3326432.1"
                     /translation="MKKILFLLLAFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLTLDQESEKIALQNAQNSYQLALVEYENTKSKMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYKNIMTKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVKLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            complement(4182..5456)
                     /gene="cmeD"
                     /locus_tag="ACHDOB_001520"
     CDS             complement(4182..5456)
                     /gene="cmeD"
                     /locus_tag="ACHDOB_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HFN3326433.1"
                     /translation="MFEKYLKSAMFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESKEKLSLLDKEQSKNYLALNAITLYFNTLSLEKILLANQQKVAFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSNTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FVNLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
BASE COUNT         1828 a          863 c          799 g         2026 t
ORIGIN      
        1 aatgacaaat attctaattt tagaatataa aaacgagaat acccttgaac tttttgaagc
       61 ttttgcagat gagagcgagc atttaaaata ttgcgtgaat tttgaagttg accgcgaaga
      121 gtataaaaaa tttcgccaaa atattcacaa taaagaaaat atgaaatgga aatttaatgc
      181 tttagctaag ctttttagta attattttaa tactttagaa tgcactccgc aaaatgatct
      241 tagtgaaatc agacaaaaat atttgatttt ggtaaaactt tatcatcctg attttcatca
      301 aggaaaaagt gcaatagaaa aagcttacgc aagagaacag tttgaaaaaa tacaaattgc
      361 ctatgataac ttaaaagcac tttataagaa taatacttaa aaaaaattaa attaatcatt
      421 ttggttaatt taatttttct ctctcataaa tttttcttaa tttgctatct agtttaaaac
      481 agaatttaaa aagtgcaggt actacgagta aggtaagcaa agtcgaactt ataagtccaa
      541 agataatggc tattgccata ggagaattag cttcatagcc cgcacccctt gaaagagcaa
      601 gtgggagcat agcaaaaatc atagcaaaag ttgtcatcaa tatagccctt aagcgcgatt
      661 ttccagcgat taaaagagct ttatcgggat ctaaaccttc atggcatttt ttattagcta
      721 catctacgag taaaatagca tttttcccca ccataccaaa aagtaagatg atggcaataa
      781 gtacaaaaag tgaaaaatta tgccctgtga taaaaagccc tatagaagct ccgccaaagg
      841 ctaaaggcat ggttatcatg atgattaaag gcagaataaa actttcataa agtgcggcta
      901 aaacaagata aattaaaaca aaagcaagtg ctactgccat agcaaaacct tgcacggttt
      961 cacctaaaag attgataaag cctgaaaaag catagctaag acttggattg ttatttaaaa
     1021 ttttatccat attatctagt aaaagttttt gcaccgctcc taaggaaaga tcattcactc
     1081 cagctgtgat tttcacagag cggtttttat tgtaacgatt gatagttttt aaatctttac
     1141 tgtatataaa atccaccacg cttgaaagtt ctaaatttat accttggttg tttttaatgc
     1201 taatgcgctt taaagcttct atgtcttttt taaattctgg agcaaaactt aggataatat
     1261 catcttttga attgcctcta tccatgcttc ctacgctaag ttgcgagaaa gaatacccta
     1321 aaaccccagc gatatattga ggattgacat ctaaaagttt ggctttttct ttgttgatgt
     1381 gtaaggctac ttcatctttt gtagcattag cattatcact tatatctaca atgcgtgcat
     1441 tagtgcctaa aatttctttt gcctgagaag cagcttcttt tagagtgttt aaatcatctc
     1501 ctaagattaa aaattgcacg ggatcatcaa tacctgcacc ctctatcttt ggaagttcta
     1561 aaattttgat ttttaaactt tcatcttgaa atttttgacg atataaactt actatggcac
     1621 tttgtcttaa atttctttcg tctaaatttt taagtttaac ataaatttta gcctttgtag
     1681 catctttggc atcatcatag cctacaagta aaaaagcgta tttgacattg ctatcatttt
     1741 tgattttttc aagtaaattt aaactttttt ctttcatggc ttctaaactt aaatcctttt
     1801 tgctttcaag caaaacttga atttcactat catcttccat aggtaaaaaa tcaagcccta
     1861 tgcgagtggc taaagcaaaa gaaagcccta taaaaacaag agtggctagg ataaatttta
     1921 ctttattttg taaaatttta tagagtaaat tttcatactt ttgctctatt ttttcaaaaa
     1981 aagcttctgt tttttcataa aacttgtttt cttttggatt taaaaatctt gccccaatac
     2041 taggtattaa aaacacagaa accaaaaagc ttataactat cccacttgca acgcttatgc
     2101 ctaaggcatt gaaaaaaagc cctgatatag agttcatata agaaataggg ataaaaacac
     2161 aaagtaaaac tatacttatg cttaaaacac taaaacctat ttcattgata cctaaaaaag
     2221 cagcttgtaa aggcggataa gtttttagtt ttttagcaat attttcaatc actactatag
     2281 catcatcgat aaaaattcct atgcttaagg ttaaagctat aaaagttaag cggtttaaat
     2341 catagcctaa aagatcgata ataaaaaaag ttgaaatgat agaagtaggt atagctatgc
     2401 aagcaatgag agttgcactt aaatttctta aaaataaaaa cacgataaca agggttagaa
     2461 aaatccccaa aaccatatca aaaatcactt gagaaaggtg cttgtggata tttaagcttt
     2521 tatcataaag catattaatg cttatatctt ttggaatttg tttttctaaa ataggcaagg
     2581 catttttgac atttttaatc atttcaaggg tgttataatt tgtgattttt ccgagttcta
     2641 aaagcacccc ttctttacct tcgtataaag cactttgttt ttcatcttca taaaggcttg
     2701 aaatattagc aatatcactt aaaaatactc ctgtttttat gcgaagatta ctaagttctt
     2761 ctaaatttgt ggcttcaaaa tagcctttaa tgatatagtt atcttgattg ttattaagtt
     2821 cgccaagggc ttgtttaaaa ttttgacttt tgataatatt tgctacatca agggcgttaa
     2881 gattgtattt tctaagttca tttggtttta attctatgcg aatttggggt tctaaaaacc
     2941 ccttagcttc gattttacct accccttcaa ctctttgcaa aaaaggcttt attttgtcat
     3001 tgatttcacg catgagttgt aatttatctt tagaatataa aaaaagcgaa atagcagaac
     3061 cagaatctga actgattttt tcaatttcag gcttagaagg taggcttaaa gttcctattt
     3121 tatcacgcac atcattagca gctacttcaa gatttttacc tagtttaaac tcgactacac
     3181 tcacactaaa attatcatac gcagctgagg ttatggtctt tactccatca atctcactta
     3241 gagcattttc tatttctttg gtgacttttg attctacgaa atttaaatct ccatttacct
     3301 tgcttgtaat ctttataaga ggtatggaaa cattaggaaa taaatttaca ctcatgctaa
     3361 aagcagagat tagcccaaaa atcataagag ctaagaaaaa cattagcaca gtaattggtc
     3421 ggtttatagc tagtttaaac atttttaatc tttagtgatg attctacctt cgccaaaaag
     3481 cccaggtgtt agatttgtag tttgcacttc agcataaatt tttcttgttt ttacttctat
     3541 gcttggataa ataagactga tttttccttt caattctgta ccattttgat cgattttata
     3601 aaagaaatca tcgcctaatt taactttatc tttgtatttt tcatcaaaac ttaaaatcag
     3661 tttgctttgt ggataggaaa aaatttctat caaaggttga gctactcctc ctactccttc
     3721 gccaacttgt ataaatttat ttgcgatgat agcatcataa ggtgcgcgca attctttttt
     3781 tgtcatgata tttttataat aagctatatt gatttttgct ttgtttaaat ttaaattagc
     3841 agcatcaaac ttagctttca tatcttcata gctttgtttg tctataacat tttctacagc
     3901 tttgattttt tgcattttgc ttttggtatt ttcatattct acaagggcaa gttgataaga
     3961 attttgagca ttttgaagag ctattttttc actttcttga tcaagagtaa gtaaaagttc
     4021 tcctttgctg actttttgtc caatttctac aggaattttt tgaactaaac ctatgctttc
     4081 aagggcaagt ttgctttgtt ttgatgcttc tacattgaaa cttgcgtaaa tttcttcgcc
     4141 aaaggcgcaa ttaaaagcaa gaagtaaaaa tagaattttt ttcattcttt aacctttgaa
     4201 ttaagatcta tacccgcatt aaaataataa tttgctttag taatttcaaa ttcattttta
     4261 gcaagctcta aatcgctttg tgctttaaat ttagcctcta aagcttgaag atattccaca
     4321 taagaaacaa gtcctgcttg gtatttttta tctacacttt caaaagccaa atttgcagca
     4381 tttaagctaa gattaagagc taaaatttgt tcttgtaaaa cttttaaact tttgtctaaa
     4441 taatttaatt cttctttatt ttttctctca ctaaatcttg cgtttgcatt ggctatttga
     4501 acgtttaaac gctctttttc aacttcttta gcccttgcat tgaaatcaaa aattttccat
     4561 tccataccta aaataaactg attaccttga gaatattttt ctaagaattg atctgctaag
     4621 tttacaaaag gagctggaac ttttggatta taattgtttt tataaaagtt aaaattatct
     4681 tgaatataaa attttggaaa atattcagct tttgctaaat ttacactttc tttagcaaga
     4741 ttgatttgtt ctttagctat cattacttca tagttttgac ttttttcttg ttgcggattt
     4801 tctaaaaaag cattcccttg cactttaaaa tctgtattgc ttaaaatttt aatctctttt
     4861 tgtatattgg caagttttaa ttcattttga ctgagctcta ataagcttaa atgatatttg
     4921 gctttaatgc tttcaagttc atctttaggg ctaagtcctg catcgtaaaa tttttgcaat
     4981 ctttcaaaag ttgattttaa aaaagctact ttttgttgat tggctagtaa aattttttca
     5041 agacttaggg tgttaaaata aagtgtgatt gcatttaagg caaggtaatt tttgctttgt
     5101 tctttgtcta aaaggcttaa tttttctttg ctttctaaag cccttaaatt ggcctctcta
     5161 gcacccccat caaaaagcaa aaaattaaga gaaactttag caaataaact ttcttgtgga
     5221 tcgataatga agcgatcttt attgttggct acataagctg agtttagact aagagagggt
     5281 agataatttc taaaagcttg ttctttgtcc aaatttgctt gttcgctttg catttgttta
     5341 atgagatagg actcattatt ttgacttagt gctataaatt cgtgcaaatt agaagctaac
     5401 attgctaagg gataaagagc taaaaacata gctgatttta aatatttttc aaacatttga
     5461 tattttagta tgctttatat aaatttcaat tgaagttttt tatataaaat aaaatt
//
LOCUS       DAZAND010000095         5503 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.096, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000095 DAZAND010000000
VERSION     DAZAND010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5503
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.096"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..1020)
                     /gene="selD"
                     /locus_tag="ACHDOB_001521"
     CDS             complement(<1..1020)
                     /gene="selD"
                     /locus_tag="ACHDOB_001521"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0001887 - selenium compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_except=(pos:complement(970..972),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HFN3326434.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDINILKELLEGANDKVQECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTAKVGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKSMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELIPDLNEEKLLLCDPQTSGGLLISISEKESLECLKKLEDENIQAKIIAKVVNKQE
                     NDIIIS"
     gene            complement(1030..1602)
                     /gene="yedF"
                     /locus_tag="ACHDOB_001522"
     CDS             complement(1030..1602)
                     /gene="yedF"
                     /locus_tag="ACHDOB_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HFN3326435.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLSSLSLNPVVDENAQEFCIKVQKKNFNSSEVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(1714..3816)
                     /gene="ccaA"
                     /locus_tag="ACHDOB_001523"
     CDS             complement(1714..3816)
                     /gene="ccaA"
                     /locus_tag="ACHDOB_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HFN3326436.1"
                     /translation="MFKSLNIGLKLIFSVATVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLD
                     FSAIATYLLDPKSQKYNGELRILLNSDGLVAIHPNKNLVLKNLKDVNPNKGAQETYKA
                     MSEGKNGVFNYIAFDGDDSYAAINSFKVQDSSWTVLVTAPKYSVFEPLKKLQLIIIGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVLDAKGEVEITTNILGKEIKKMLVA
                     SSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVDKKRF"
     gene            complement(3929..4666)
                     /locus_tag="ACHDOB_001524"
     CDS             complement(3929..4666)
                     /locus_tag="ACHDOB_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HFN3326437.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNVNIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKAYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRALELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
     gene            complement(4659..5441)
                     /gene="fdhD"
                     /locus_tag="ACHDOB_001525"
     CDS             complement(4659..5441)
                     /gene="fdhD"
                     /locus_tag="ACHDOB_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HFN3326438.1"
                     /translation="MDPLFTTQILKYKGDDSFTCDDTLVREIKLEIFINDERVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDVKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
BASE COUNT         1805 a          991 c          634 g         2073 t
ORIGIN      
        1 agaaatgata atatcatttt cttgcttatt tacaacctta gcaataattt tagcttgaat
       61 attttcatct tctagttttt ttaaacattc taaggattct ttttcactta tagaaattaa
      121 aagtcctcct gaagtttgcg gatcacaaag taataatttt tcttcattta aatcagggat
      181 aagttctttt ataaattcta aatttttata agctccagca ggaattaaac ccatattaaa
      241 atactctttt actccatcta aaaaaggaag ttcactttca aaaatttcaa aagaaatatt
      301 tttatttagc atttctttta aatgtcctaa aagtccaaaa cctgtgacat cactcatggc
      361 acttggatga aatttaagag caatttgact ggctttataa tttaactcca tcatactttt
      421 aagcattata tctaaatgtt tttgatttaa catttgtgcc tttaaagccg tacttaaaat
      481 tcctgttcct aaaggcttgg ttaaaataat acaatctcca actttagccg tattattagc
      541 aataaattta ctaggatgta cttttcctgt aacactaagt ccaaaaaaaa gctcagtgct
      601 ttctatagta tggccaccca caactaaagc attgcattct tgaaccttat catttgcacc
      661 ttctaaaagc tcttttaaga tatttatatc atgattacaa gtatcaaaac ctactatatt
      721 taaggcatta attacctctg cacccatagc aaaaacatcg cttaaagcat ttgctgcagc
      781 aatagcacca aaatgataag cactatctac tataggagtg ataaaatcaa gcgtttgcac
      841 caaagctaaa tcaggactga tttgatatac gcttgcatct tcattatttc cgatatcact
      901 aagtaaagca ggagtttttt gcatgaaatt taaaattgtt ttaagaccac ccgggcttaa
      961 tttcgctgct caacctgctg ctttaacaaa atgggttaaa ttttgatttt tatattgcag
     1021 tgtttttcct tatagagtaa tgatttttgc tttaccaaaa agctcgttta aaatttcata
     1081 agcattgcct atatttccta ttttaagttc tttgctttta ttgaaaaatt ccaaacaagc
     1141 tccgcaactt atgatctcaa tacctaaatt ttcaagttct ttcatagcta aatgtgcttt
     1201 atgattttca tcaacattga ttaaaacact ttcatttacg caaagaattt tacttggagc
     1261 atgatctaaa ttttttaagg tacttaaaaa tcctacaagt aaattttgtc ccaattcacc
     1321 ctcacccact ttgtcggttt ttaaaaataa aacattataa tcgtgaatat ttacttcact
     1381 agaattaaaa ttcttttttt gtactttgat gcaaaactct tgtgcatttt catctacaac
     1441 agggtttaaa cttaaagagc taagaaattt tacaacatta ttttttgaaa taatagaatt
     1501 taaaacaatt tctaaaattt cattttcttg aagtttttca agagcgtttt ttgtttcaac
     1561 tataggctga ggacaagaaa gattgcgaca atcaattttc attatttttc cttgatatta
     1621 gctttgaaaa ataatattat tttattactt gttttgtgtt taaaaatttt aaataatata
     1681 gaaaaaattt aaaagctcaa aaatgagctt tttttaaaat ctttttttat ccacatcttc
     1741 aagaattgcc gcagcaattt gattgacttc atttgttata ttattggtaa catttgcaac
     1801 ttcgacattt tccttagtta cagtttcaag ttgtgctata gcatcgttaa tctgtgtgat
     1861 tcctgctgtt tgttctttta cagattctgc tacttcattt acgctttgaa caagtatatt
     1921 aatatttgcc tcgatttcag ataaggattt tcctgttctt tccgcaagct gtcttacctc
     1981 atctgcaaca actgcaaaac cacgcccatg ttctccagca cgtgcagctt caatagctgc
     2041 atttaaagca agaagattcg tttgctcagc gatatcttta atcacattga caatattttt
     2101 tatatcatca gcttgcgaag caacctcaac tgtttttcca cttacatttt gcatagaaga
     2161 attaatctcc tctacagctg cagccgattg ttctaaagaa ctcgcttgtg cattagagcc
     2221 atcagcaagt ttttgcatag aattttttaa ctcttctgac tgattggcta aatctttagc
     2281 aaaatttgaa gaagctacaa gcatcttttt aatttcttta cctaaaatat tagttgtaat
     2341 ctcaacttcg cctttagcat caagtacctc tgtgctaaaa tcaagcgctt tataactatc
     2401 aaaaactcta ttaatttcat tcatattaga accaatttta ctttgcaaaa catcaagcat
     2461 tctattaaga acatttttaa gttctactaa ttgagggttt ataggatttt tagtaattct
     2521 tgcagttaaa ttaccttttt cgatttctct agcagtttgc accgattcat ctacagcatt
     2581 ttgatcttgt tctaaagata tttgaatctt ttcaatattt tcatttatga ttctgcccat
     2641 tgctcctagc tcatcattgg cacgaatttc aatagcctta ggttcaattt tttcatggtt
     2701 taaaaaacgg aaaaatgatt ctaaagaact aagaatcaca ggcaatctag atgcgacaat
     2761 ttttcttacg caataataaa ccactcctaa aacaacaaaa ataaaaataa aagatgcacc
     2821 aataataatt aattgtaatt ttttcaaagg ttcaaaaact gaatatttag gggcagttac
     2881 caaaaccgtc caagaactat cttgcacttt aaaactatta atcgcagcat aagaatcatc
     2941 accgtcaaaa gctatatagt taaaaactcc attttttcct tcactcatag ccttataagt
     3001 ctcttgtgca cctttattag gattgacatc ttttaaattt tttaaaacca aatttttatt
     3061 aggatgaatt gcaacaagac catctgaatt caaaagaatt cttaattctc cattatattt
     3121 ttgactctta gggtctaaaa gataagtagc aatagccgaa aaatccaaag tcataccgat
     3181 aacacctaca acttgatttt ttcgatcaaa aataggcata gcaacattta cagcatcaaa
     3241 atcttgacct tctaaattca tcttgatagg acggcctata tatactttat tttccccata
     3301 ttttgctttt tttaatatat cttgcacaac ttgcagatta gctatttcat cactagcttg
     3361 tattgctttt attccgcctt tattatcctt ttcttcatca gcgtaaagca tgacaaattt
     3421 tccactttga gtattgaaaa atttactctc ttctttaaag tattctggcg gatcgataag
     3481 atacaaataa gtaaaattag aataagcact attatcaaaa gtattggtta taatatttgt
     3541 tatattatct atatctaaat cttctttaga ggttgatcta aacatttctg ttaaagtacc
     3601 tgaaatactt ttatttaaag cgatcatttc cccaaaaatt ccttgagttt gggtagcata
     3661 ttctttcgtg atagaagcaa gaatatcttc tgtattttta gtaatatttt gacttacttg
     3721 ttttgtgatt aatgaaatta aaataacaag tccaataaca acaacagttg ccacagaaaa
     3781 aataagtttt aaacctatat ttaaagattt aaacatctta taactcctaa aaaataaaaa
     3841 attcagattc taattttaac atatttttaa aaaaataata ttaattaatt ataaaaatat
     3901 tatgtattag tattttttga tagaagattt atttttttcc ttttaaaaac agttctttaa
     3961 agcgtttatt agcgtattct tctatatctt tttgtaaaat agagtaattt tccattaatt
     4021 ccaaagctct aggagtaagt ttagttcctg attctttaga gcgtccttgt cttgtgctaa
     4081 ctaagatttc ttgagaattt ttttgtaagg tttgtaaatg catccaagct tttttataat
     4141 taatccccat aagtttagaa gcatgcaata aactacctgt ttgtccgata agttctaaaa
     4201 gttctgtttt tcctcgtcca aaaagcaaat ctccatccgc attttcaatc caagtttttg
     4261 ttcttactat aaattgctta cctttttttt ctttaaaaca accaagttga caatacttta
     4321 catcaacctt ataagctttt aaagctgaac gcatactttt aagcccacaa ccttctttag
     4381 caatatctct tgcatcttta caaaaaattc tacgcttttc atctaaacta ggttctattt
     4441 ttttaagtac ttcaatcttt gctttttcaa aatctaaatg tccaaattgc cccaactcgc
     4501 aattatcaat tctcatgtga ttttcatcgg ctaattgtcc gattttttct atatttacat
     4561 taaatttctt tgcaatttta aaagccgtac cacaatctaa tttttcatta ctatttaaca
     4621 attctctcat atatgagatg atttcttttt cttgattttt atccatgaat tctaaattct
     4681 ccactataaa tattaatctt attttctcta gcaaaaccac aaagcgttaa atcaaatttt
     4741 cttgctatca taactcctaa acaagtagga gccgtgcgtg aaacaagtac tggaatttta
     4801 tgcataactg ctttagctac catttcagaa cttagccttc cactaaccat taaaaaacat
     4861 tgacttaaat caaccccagc taaacgtgct tttcctaaag ctttatctat ggtattatgc
     4921 tgagctatat cttcacctat aaaaaaagtt ttctcatcta caaaaagctt agccgtatgt
     4981 acacagcctg ttttctcata aagctcgcat tgagtataaa aagtactcat ttgttttaaa
     5041 atttcatctt tgctaaattt tacatcagaa ctaattttac tcgcttcaat agcttctgga
     5101 tcgatattgg cagtatgtgc tctaccgcaa ccacttataa ctacaccttc agcattaagc
     5161 tttgctaaat tttctttatc aatctttgct ttaatatgca cactcatacc atcatctttt
     5221 gtttctatgc tctcaatatc gcttactttc gcaatgatat tttcgctcat taaatatcct
     5281 attgctaatg cctgttcatc tacaggagtt gccattaaag cacctactct ttcatcatta
     5341 ataaaaattt caagcttaat ttcacgcact aaagtatcat cacatgtaaa agaatcatca
     5401 cctttatatt ttaaaatttg agttgtaaat aacggatcca taccttatcc tttaaatatc
     5461 tttaaataat attatatcaa aaaaacataa ataacaaatt tat
//
LOCUS       DAZAND010000096         5479 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.097, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000096 DAZAND010000000
VERSION     DAZAND010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5479
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.097"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(68..1000)
                     /locus_tag="ACHDOB_001526"
     CDS             complement(68..1000)
                     /locus_tag="ACHDOB_001526"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009326 - formate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009061 - anaerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HFN3326439.1"
                     /translation="MRKVFVTLLLSVASLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            complement(997..1638)
                     /gene="fdh3B"
                     /locus_tag="ACHDOB_001527"
     CDS             complement(997..1638)
                     /gene="fdh3B"
                     /locus_tag="ACHDOB_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase FDH3 subunit beta"
                     /protein_id="HFN3326440.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            complement(1635..4439)
                     /locus_tag="ACHDOB_001528"
     CDS             complement(1635..4439)
                     /locus_tag="ACHDOB_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(3897..3899),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HFN3326441.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKMSNEQAY
                     YVRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANP
                     AVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIF
                     DEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTL
                     IWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENL
                     PGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDA
                     IDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIY
                     LLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTL
                     RDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGE
                     YYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPID
                     TGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARA
                     VVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPL
                     NLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGT
                     KIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPKGTKPYASGESANTVTNYGYD
                     IMCQIPETKGGLCRISKDGK"
     gene            complement(4439..4630)
                     /locus_tag="ACHDOB_001529"
     CDS             complement(4439..4630)
                     /locus_tag="ACHDOB_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HFN3326442.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWENYYIKAE"
     gene            complement(4605..5318)
                     /locus_tag="ACHDOB_001530"
     CDS             complement(4605..5318)
                     /locus_tag="ACHDOB_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0061077 - chaperone-mediated protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HFN3326443.1"
                     /translation="MEALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIAMAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
BASE COUNT         1761 a         1170 c          707 g         1841 t
ORIGIN      
        1 aaaattcgtt ctatttattt caaaaaagct taaaactacc gctatgcaat aacatagcgg
       61 ttaaagatta aatttttaca ttaggatcat aagaaaaact aggttcaatt tgctttttat
      121 tgcttaattc tttataccaa taagaatgta aaatataaac ctcttcttct tctttataac
      181 cactaatcat agaatggata ctgcctttga ttgcaaatac tgccatataa atatgcacac
      241 caaaaaacac tgcacacact atacccaaga aattatgcac tatagctgaa attcttaaaa
      301 gttcaatttg agttaaacca aaaagacctt gaattgccgt ggaattaaaa tcaagaaaat
      361 acataaatcc acctgtaatt atcatcaaaa atccaccaaa tacagctata taataccaag
      421 atttttgacc aaaattaaac ttacctgcag gtacaggacg ttttactttg cttaaataac
      481 cacctactat catcatccat ctgatatcat aacttgcagg aagcattctt ttaatccacc
      541 ataaaaacat agggattata gagatgataa ataaaaccgt tgcaaaagca tgtaaatttt
      601 tacaaaccct tacaaaaagt ccgcctccaa aagtcgcccc aaacatcatc acaaaaccag
      661 ttggcactaa aatcacccaa gaaattgccg cgataaaatg aaaaagtctt tcaaataatg
      721 taaaagcata aattttcttt ccatcgtgtg aaaattgctt aggtcctata accatataat
      781 gcaaagcaaa tgcagataat accgcaataa cagcaattaa agctatagta gctatatatt
      841 caccttgtaa agttgtccaa agtttgccaa aagtatcata atttgggata tttgtaatac
      901 gatgaaaatc ccaaatttga gtatcttgtc ccattctctc gctaccataa gcaaataaac
      961 tcgctacgct taataaaagc gttacaaata cttttctcat aagcgttcct ttcctgtgta
     1021 agcaatcttc cactccaaac tttccgaagg atttggaatg ccataatttc tattcataag
     1081 tctattatga taaatctctt ctattttaga actttcacct actaaaagtg cttttgtcga
     1141 acacatcgca gcgcatacag gaacttttcc ttctgcgata cgattttgcc cataaagttc
     1201 tctttctttt tctgaattcg ttgcttcagg gccacctgca cacatagtac atttatccat
     1261 aatgccttta tttccaaaaa cactatcttt tggaaattgt ggtgcaccaa aaggacaagc
     1321 ataaagacaa tatccacaac ctatgcaaat ttctttatca tgcaaaacaa taccatcagc
     1381 acggatgtaa aaacaatcca caggacaaac gatagaacaa ggagcatcat cacaatgcat
     1441 acaagaaata gaagttgaaa cttcttttcc ttgaattcct tcatttaaag taatcacacg
     1501 gcgacggcga atatgaatag gaagctcatg tgcttcatca caagctaccg cacaaccatt
     1561 acaatcaata caacgctcat tatcacaaaa gaatttcaag cgttcttttt ctaaatttgc
     1621 aaaatttacc ttactcattt tccatcctta ctgattctac aaagcccacc tttagtctct
     1681 ggaatctgac acatgatatc ataaccataa tttgttaccg tattagcact ttctccactt
     1741 gcataaggtt ttgttccttt agggaaattg tgcgttaaat ccacgccttg cataactcct
     1801 gtaaaatgga aaggcaagaa aatcatatct tttgctacac ctggattaac cttcactctt
     1861 acatgaattt tagtaccttc tggagaatgt acccaaatca tatctcctgc tttaatgtct
     1921 tgctcttttg ctaattcagg attgatctca caaaacattt caggtgttaa acgcgttaga
     1981 tacatagatg ctctattttc catacctgca ccatttaaat tcacaagtct tgcagtaaca
     2041 agattaagcg ggaattcttt agaataatcc ttagcttgtt gcacagacac aaatttagta
     2101 tccacgcggt aaagcgcttt ttgatcttca aaacttggat atttttgcac caaatcgttt
     2161 cttggagaat gtaaaggctc acggtggagt ggaattttat ctttaaaagt ccaaactaca
     2221 gctctagctt tagcatttcc ataaggaact atgccttttt ctatacattt agttgctatg
     2281 atattgctat catcataaga ccaagttgat cccatttttt ctttttcttg ggcacttaaa
     2341 gtaataccta aaactttttc tatattatct ttagtaattt gtggataacc tgtatcaata
     2401 ggtgaattta aaggcgcatt tttagcaagt aaactctctc cttcatactc aagtccaaaa
     2461 ttatttctaa agcccatacc accttttgcg acttcaatgt cggtattata aagtacagga
     2521 gaacctgggt gcttatcact ccaacaaggc caaggaagcc cgtaatactc accagcaact
     2581 tcatcttttc cttctaaagt tacctcatca aatttatccc agtataaagt atgcttttta
     2641 agcctttcag gactccaacc attaagccct atacttctaa ctgcttttgc aatttctctt
     2701 gttgcatttt caggccaaac aatctcacct ttttcatcgc gtaaagtctt ggtaaagtct
     2761 tcataaaaac ctaatttttt agcaagctca aataaaattt cttgatcttc catgctttca
     2821 taaagtggat ctacaacttt aaatctccat tgtccgctac gatttgttgc tgttacactt
     2881 ccgcttgttt caaactgtgt tgctgcaggt aaaagataaa ttccatcttt tctttctgca
     2941 ataatgcctg cttcatttac aaaaggatcg gctaaaacta aaagctctaa agcttccaaa
     3001 ccttctttaa cttttacttg ttgtgcagtc gaagtgatac catttcccat aactactaaa
     3061 gcttttaaag gcgttcctgc gttatcgata gcatcatttc catcttttcc atttaaagcc
     3121 gctgcccacc atctagcaag tgaaagtccg gttttatgca tccaatcttt gcttacaaaa
     3181 tttcctaaaa gccactcata atccacaccc caaattttgg catagtatct ccaagtcgct
     3241 tcatttaaag gataataacc tggtaaattt tcgctcaaac aagccatatc tgaagcacct
     3301 tgaacattat catgtccgcg taagatatta actccaccac caaatttacc tatatttcca
     3361 agtaccattt gcacaatagg tgctaaacgt gtatttgaag ttcctacagt gtgttgagtt
     3421 aaacccatag cccaaataag cgtagttggt ttgtttttag ctacttcgtg agtgatttgc
     3481 accaaaagtt ctttagaaat tcctgtaaca ttttccacct cttcagctgt ccattttgcc
     3541 gcttcttcac gaattttatc gattccaaaa actctttcat caagatattt tgtatcttct
     3601 aaaccttcat caaagatgat ttttagcatt ccatacatga aagcaatgtc agttcctgga
     3661 cgaattcttg cataaatatc cgcttttgct gcactttttg taaatctagg atctacaacg
     3721 ataagctttg cacctttttc ttttgctttt aagaaatgtc taaaacccac aggatgattt
     3781 accgctggat ttgccccaat gataatgata catttacttc tttgaatgtc tccaagatgg
     3841 tttgtcatag cgccataacc aaatgtattc gccacaccgg cgactgttgc gctgtgtcaa
     3901 attctagctt gatgatctac attgtttgtt ccaaaaaacg ctgcaaattt acgtacataa
     3961 taagcttgtt cattgctcat ttttgcagaa cctaaaaaca taacactttc aggattttct
     4021 ttacgataag cagctagttt ttctccgatc tcacttaaag cttgctcata acttatgcgt
     4081 ttccattctc cattttcttt tttcatagga tattttaaac gcacatgtga acgcaccata
     4141 tcgatcatat cagatccctt gcagcaatgt ccacctgaac tcacaggatg atcttgagcg
     4201 atttcttgac gcacccaaac accattttgc acttctgcaa taatcccaca gcctacagaa
     4261 caggctgtac aaactgtttt tactttttta ctaccttcat aagcttcttt aagctcatca
     4321 gcactcgctt ctcttaaagt ttcacttcta gcaagcaacg gtgttgctag acttgaaagt
     4381 gctgccattt taagaaaaga acgacgcgta agcttgatat tttcacctac acttgacatt
     4441 actcagcctt tatataataa ttttcccaat tagcacttct ttgaaaaagc acttcttttt
     4501 tcttgctttt acctttaacc aaatcttttc tttcttcatc tttagctaga gctaaagttg
     4561 tgctaccaag cactccagca gcccctaagg caaaagcgga ttttttaaga aattccctgc
     4621 gatttttcac gagtcctcct ttgtttattt gcttctcttc ttaaaaattc cgaacgcgat
     4681 agatcatttt gcactttttt agaatttatt tttgcaggtt tttccacttc aaagcaaagt
     4741 ctttcaaatt ccataaaagc catcgcaata cttgcaattt ccttatataa attcgcattt
     4801 ttattcatga aaacatcgcc taaaaactca tcaatgcttt tattgatcac tttttcaaaa
     4861 agctctttag ctaaatcatc ttcattttgc cttaaaaatt cactcatcaa caataaacaa
     4921 aatccaacac tatcttcact ttctttaaaa aatttttcat tgcgtcttat tttacttttg
     4981 actaaaattt gacgcacgca aagtaaagga tttgaatttt caaaaccttc ttctatgtaa
     5041 gaaaaagtcg ttggaatgct gtttttaaga cttaaaaaaa gcaaatcgta ttctttaaaa
     5101 aatgcttgta tagaattttc atcatctaaa tgcttaagca agatatcaaa atttgatttt
     5161 aaattttcat caaataaaca ttcttgcatt gtctttaaat actcttgtaa ttttgacaat
     5221 ctttcttcag aaaatgaaaa aacaaaaagc tctcctagac attgataata aagacttcta
     5281 gctaatctta atttttccaa atccattaaa gcctccatgc attcaaaatt ttcaaaaata
     5341 gctttaaatt ttgcttgaat gaatattatg caaaatatac ctaatattca ttttaaagcc
     5401 gatttttaaa tcgatttatc ttaatactat ttgatttaaa aatcactgaa tttcaataaa
     5461 attccacaag gatttaaaa
//
LOCUS       DAZAND010000097         5164 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.098, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000097 DAZAND010000000
VERSION     DAZAND010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5164
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.098"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            84..158
                     /locus_tag="ACHDOB_001531"
     tRNA            84..158
                     /locus_tag="ACHDOB_001531"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:116..118,aa:Asn,seq:gtt)
     gene            complement(248..496)
                     /locus_tag="ACHDOB_001532"
     CDS             complement(248..496)
                     /locus_tag="ACHDOB_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HFN3326444.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSAIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(507..1106)
                     /locus_tag="ACHDOB_001533"
     CDS             complement(507..1106)
                     /locus_tag="ACHDOB_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HFN3326445.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFELAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKHS"
     gene            1254..1919
                     /gene="dccR"
                     /locus_tag="ACHDOB_001534"
     CDS             1254..1919
                     /gene="dccR"
                     /locus_tag="ACHDOB_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HFN3326446.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            1912..3102
                     /gene="dccS"
                     /locus_tag="ACHDOB_001535"
     CDS             1912..3102
                     /gene="dccS"
                     /locus_tag="ACHDOB_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HFN3326447.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVSKDLFWIRTKVF
                     GFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNAKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(3145..4782)
                     /gene="groL"
                     /locus_tag="ACHDOB_001536"
     CDS             complement(3145..4782)
                     /gene="groL"
                     /locus_tag="ACHDOB_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HFN3326448.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKIANLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPAMPDMSGMGGMGGMGGMM"
     gene            complement(4803..5063)
                     /gene="groES"
                     /locus_tag="ACHDOB_001537"
     CDS             complement(4803..5063)
                     /gene="groES"
                     /locus_tag="ACHDOB_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HFN3326449.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
BASE COUNT         1650 a          812 c          757 g         1945 t
ORIGIN      
        1 tttacataaa aaatgtattt ttgtgtaaaa acccttgaca aagtttttta atttcactat
       61 aatcacattt tacttttaaa tattccggat tagctcagcg gtagagtagt cggctgttaa
      121 ccgattggtc gtaggttcga atcctacatc cggagccact tttttaactc catttttaat
      181 attcataaat gtattttaat ataaaaaatt aataagtctt tatcacaaaa aattgtgata
      241 aagtttttta ttttgtttgt ttaagatttt tgacaatttt atctattttt ttacttgcct
      301 tttgataatc cccatcttta agttcttcta gggcattaac agcaaaagaa aaatcttcaa
      361 cttcattaag ataagcctct atggcttctt ttactatggc tgattttggt ttagaaagat
      421 ttttacttaa attatccaaa cgctccttaa gctctaaagg cattctaaaa gaataagttt
      481 ttacattgcg tttcatttta tcctccttaa gaatgttttt tgtaaaattt tatagcttgt
      541 ttacaagttt tacaagtaaa tttatgacct tgtaattcta ttttttgatg aatgctataa
      601 ggaacatcgt gaattttacc aggacaatta caggtataaa gataaaattg tggatgctca
      661 ttatcttcat cttctgctgc ttcaaagcta acatcaccac catcatctgt agacaaagaa
      721 gaacttctcc atttttcaac tttcatgtct tcatatagta tatgttctaa aagccacttt
      781 ttagccacta tataaagttt ttctttaaga tcattggttg atttgatatc tttgatcaag
      841 ttgatcatgg tttggatgat ttctttatgt atttttcgat gttcttctaa atttggatag
      901 cctattagct gcatgtattt ttcttcatca ttaaagtgat ctttcatata attaaaaaat
      961 tcagccaaaa gttctttgac ttcattttta cttacagatc tatctgatac aacttcaact
     1021 tttgcagcaa gttcaaaaag ctttttatgt tgctcatcaa ttttagcatt gtgcacacta
     1081 tagctgttat cccattttgg aagcatttta actccttaag gaaaaattta tttgtataaa
     1141 aggattatag ataaaaataa attaaataaa aatgaaattt tattaaataa ttgataagaa
     1201 ttttgataca atgatatata tttaagagat ttgaagttag aaagatttaa attatggctg
     1261 ctaaaatttt acttttagaa gatgatttga gcttgagtga gatcattgaa gagtttttaa
     1321 acgatgaagg atatgaagta tttttatgcg ataatgcaca agaagcttta gatatggctt
     1381 atgaaagata ttttgatctt tggattttag atgtaaaagt tcctttagga gatggatttt
     1441 cattacttaa agaattaaga aaaagcggaa agcaaactcc agcaattttc atgacttctt
     1501 taaacacaac aaacgattta aaacaaggct ttgacgcagg ttgtgatgat tatataaaaa
     1561 aaccttttga acttgccgag ttatctatca gggttaaagc tttgcttaaa agagcttttt
     1621 cacataaaaa tgaagatttt gaagatttag gagatggatt tagatttgaa tttactacac
     1681 aaattcttta ccataataat aaagccttga ctttaccgag taaagaaatt aagcttttgt
     1741 ctttattact taaaaataaa aacaactttt taagcacaga gagaattttt gaagaactct
     1801 gggattatga tgaggagcct agtgagctaa gtttaagagc ttatgtaaaa aatttacgta
     1861 aaattttagg aaaagaaaaa attataaatc aaagaggcag gggatattgc tatggctaaa
     1921 aaagtcatta ggcaaatttt attaatctac ttaacaacta caggtatttt tttaactatt
     1981 ttttttgcat tatggtatca aaaattatat gaagaattag ttgttttaaa gggtgccact
     2041 ttgagagaaa atcatagaaa tattgttata agcatcttaa attctcgttt tacccctata
     2101 gatataagtg caaaaaatat tgctcaaagc acagcgctaa aatttgctat atttgatgct
     2161 aaaaagattg tttttagtaa tatagatttt gatttaagaa aagcaaagat agagcttaaa
     2221 ggtagaggta tttgtgataa taaggttttt ttccttgctc ctatgagtgc agatcattat
     2281 tttttaagac atgctagcaa tgaagaagta aatactaacg atggtttgca aattttaata
     2341 cagggtgaag atgttagcaa agatcttttt tggattagaa cgaaagtttt tggttttgct
     2401 attatggctt tttgcatatt gggtttaata tcttatattt tagtaaaaat tgctctaaag
     2461 cctttggagg ataaaatcag cacactaaat cgttttatta aagattcaac tcatgaactc
     2521 aataccccat taagtgttat tttgatgagt atagaacaac ttgagcatca aaatttagga
     2581 gataatgcta aatttacaag gattaagctt gctgcaaaaa gtttgtctca agtgtattct
     2641 gatcttgttt tttataattt ccctaatact ttagaaacag aaaaacaaaa atttgattta
     2701 agaatactac ttgaagaaag attggaatat tttaaagtat tttttgagca aaaaaaaatt
     2761 acactaaagc ttgatttaaa tcaagcaaat atttttgctc ctaaaagtca aatttctaaa
     2821 ttgattgata atcttataag caatgctatt aaatacaata aaaaaggtgg agtaatttct
     2881 ataattttaa aagccaattt tttaagtatt gcggatacag gttgtggaat ttcaaagtca
     2941 aatttaaatc atatttttga taggtataca agatttaata ctgatcaagg aggatttggt
     3001 atagggcttt ctttggtaaa aaaagtttgt gatgataatg atattaagat tatttgcgaa
     3061 tctgtagaaa atcaagggag tgtttttaaa ttaaattggt aatcagcaag gaaaatcctt
     3121 gctgataaga ggttggagca gatattacat cattccgccc atgccaccca ttcctcccat
     3181 accgctcata tctggcatag caggtttatc ttctttaatt tcactaattg ttgcttctgt
     3241 ggttaaaagc atactagcta cagaaactgc attgagtaaa gctactcttt ctactttaac
     3301 aggatcgata attccacttt caagcatatt aacatattca ccttttgcag catcaaagcc
     3361 tgtattttca tctttagcat tttctacgct atttacaacc acacctgcat caaagcctgc
     3421 attttcagca atttgtctta aaggtgctct taaagctctt tcaacgatag ctgcaccgat
     3481 tgcttcatcg ccttgtagat caagtttgat tttagctttt gctttgataa gcgctgcacc
     3541 accaccaatt actatacctt cttcaactgc tgctttagta gcacttaaag catcatcaac
     3601 gcgatctttt ttctctttca tttcagtttc agttgctgca cctactttaa taactgcaac
     3661 accgccactt aattttgcaa gtctttcttg taatttttct ctatcataat ctgaagttgt
     3721 ttcagcaatt tgtgctttga tttggtttac tcttgcatcg atatttgctt tttcacctgc
     3781 gccatttact atggttgtat tgtctttatc gatgattacg ctagaagctt gtccaagatc
     3841 ttgtatggtc gcactttcaa gagttcttcc aagttcttca gaaatcactt ctccgcctgt
     3901 taaaatcgct atatcttcaa gcatagcttt tcttctatcg ccaaaacctg gagcttttac
     3961 tgctgaaata ttaagaacac cgcgaagttt atttacaacc aaagttgcaa gtgcttcacc
     4021 ttcaatatct tcagcgataa ttaaaagtgg tttgcctgtt ttttgaattt gttctaaaac
     4081 cggtaataaa tcttttaaat ttgcaatttt tttatcaaaa agcaagatat aagggcttga
     4141 aagctctact gtcatttttt ctgcattagt gataaaataa gggcttaaat aacctctatc
     4201 aaattgcata ccttcaacta catttaattc atcattgatt gattttgcct cttcaacagt
     4261 gataacacca tctttgccca ctttttccat agcatcagcg attaaatttc cgattttttc
     4321 atcagaattg gctgagattg tagcaacttg tgcaatttct tttttatctt ttacttcgcg
     4381 agaaagtttt ttaagttctg ctactatagc ttcgcaagct ttatccatac cgcgttttac
     4441 ttcaatagga tttgcacctg ctgtgatatt tcttaaacct tctttgaaaa ttgcatgagc
     4501 taaaaccgtt gcagtagttg ttccatcgcc tgcttgatca gctgttttac tcgctacttc
     4561 tcttacaagt gaagcgccca tattttcaag actatcttta agctctactt ctttagcaac
     4621 acttacgcca tctttagtaa tgcttggagc accaaagctt ttttggatta aaacattgcg
     4681 tcctcttggc cccatagtta cttttaccgc gtcattaagt tttttaacgc cctcataaag
     4741 tttatttctt gcttcatctg aaaaaataat ttcttttgcc attttttatc cttttttata
     4801 aattatttta aaattcctaa gatatcatct aaatttaaaa ctaaatattc attattatca
     4861 agtttaattt ctgttccacc gtatttagca aacacgattt tatcaccatt tgcaatatca
     4921 gtgatttctt tacttactgc tactacttca cccattaaag gcttttcttt agcattatct
     4981 ggtataatta tgcctgaggc tgttgtttta gtttcttcta cgcgtttaac tagaacacgc
     5041 tttcctaaag gttgaaaatt catttttgtc catccttaaa aatattgatt ttagcactct
     5101 tttatttaga gtgataatat catactataa aaaatgaatt ttgtcaatac tttaaattaa
     5161 aata
//
LOCUS       DAZAND010000098         5157 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.099, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000098 DAZAND010000000
VERSION     DAZAND010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5157
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.099"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(12..749)
                     /locus_tag="ACHDOB_001538"
     CDS             complement(12..749)
                     /locus_tag="ACHDOB_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN3326450.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELAIAKREWFKSKWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNITKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YAYIPDFKTLKSQFVNIKNKNYECSKI"
     gene            complement(742..1968)
                     /locus_tag="ACHDOB_001539"
     CDS             complement(742..1968)
                     /locus_tag="ACHDOB_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326451.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKHDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            2096..2680
                     /locus_tag="ACHDOB_001540"
     CDS             2096..2680
                     /locus_tag="ACHDOB_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HFN3326452.1"
                     /translation="MQTIDQIFQTQIDIKKSIFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNISIAIDLKNLNRFEYFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFYKNFAPFEIEKL"
     gene            complement(2724..3107)
                     /locus_tag="ACHDOB_001541"
     CDS             complement(2724..3107)
                     /locus_tag="ACHDOB_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326453.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQVEDYSSSGKSDFMDILNK
                     ADEKSSGDALNSSNSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLVQQGANEQSKNNTLLNDLLNAI"
     gene            complement(3183..3518)
                     /locus_tag="ACHDOB_001542"
     CDS             complement(3183..3518)
                     /locus_tag="ACHDOB_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326454.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(3508..5085)
                     /locus_tag="ACHDOB_001543"
     CDS             complement(3508..5085)
                     /locus_tag="ACHDOB_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HFN3326455.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADVLFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEFKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDTGSMHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
BASE COUNT         1875 a          902 c          616 g         1764 t
ORIGIN      
        1 aaaaatgggg gttatatttt agagcactcg taatttttat tttttatatt aacaaattga
       61 cttttaagtg ttttaaaatc tggaatataa gcataaccgc taagcgtatc tataacgata
      121 caaagagcat gcttttttga taacaaacgt ataatgcaat ctgaattatt ctttgctaaa
      181 gttttttcat atgcataatt ggcatttttt aatggagaat acactctgcc catttcatca
      241 aataccaatc tagtaaatcc cgaacaagat cctttgaatt caaccttttc tattccgaat
      301 cttttcgtaa tattaaatct ttgtgtagtt ttttcatcat ctttactaat aactccactt
      361 tgacctgaat tcattaattt gttatgattg attacatcaa cagcaatttc tctatctata
      421 ttgatttcag ttttgcctaa attagcattt ccatcgccat ttttatccaa gaaaatagta
      481 tatgtttgat cataacctgt agcagctgat tttataaaat aaatctgcca cttactttta
      541 aaccactctc tttttgcgat agccaactca tcaactctta tgccttcttg catcatggct
      601 aaactttggg tatattggat atcattaaga atttgtattg caccttctaa tagattgtct
      661 ttttttaagt aaagactgcc taaattaaaa actataccta aaatgagaat tataaacaca
      721 aattccaaca aactgaaagc tttaatcata gtttaaaatc tgatatactt tttcatattt
      781 tccaagtttt actttaacaa tttttttgtc catatcatgc ttatcggctt gttttaaagc
      841 ttttaaataa aacttattgc tattttttat tccataaaat cgcaatcttt tttgcaaact
      901 tggggctgtt gcaagctcta aaacatcttg tttttttaat tctagtgcca attctttagc
      961 aaaatgataa ttattggcaa aatgacgatt tggattgttt ataaaataat acaataattg
     1021 attagcgacg attaaaaagt aacaaaatat caaaaaaatt atagaacatt ctataaagat
     1081 tttatacctt aatcgaaaaa ctggcaatct caccctataa ctttgcatta aagtttttat
     1141 aagcaaagga gtgcaaataa cacaaaaagg caaaaaatca tctaaaaaaa gtttttgtct
     1201 taaagaaagc aacaaacaaa atacaaatgt tacgctcatt aaaaaccata ataaattttt
     1261 atatttttga aaagtcaaac gataaatagt ataaaaaaag tacacaaaaa ccaaaggaga
     1321 aaaacatgca gcaaaaattc ctaaggtatc taaaaaataa cctcttggac gaccacctgt
     1381 atcaaaacca taaaaactga tactcgctcc aaacaaaaca agagataagg taaataaaat
     1441 agcatttctt ttataaatcc caaaaaagaa aaaagttaaa aataaaatat taaaagattt
     1501 atcaacaaat aatactataa tcaataatat ataaaaaagc catttttttt catattcgta
     1561 agcacataat atagcaaggg ttaaaaaaat caccaaagat gcggcattaa ccagtaaagc
     1621 acttgcaaca gtacctggta ataaaacaaa taacaataaa gaaaaaaaag catcaatttt
     1681 agttttagta tattttaaag ctagcaaata caaaagcaaa caacttaaaa aatgaaaaaa
     1741 taaaaaagga agccttaaac caaaatcatt ttgcccaaaa ataaaagttc caaaatgaga
     1801 tatataataa agcaaactat gggaaaaaat aagtgattta ccctgctcac caaaataaat
     1861 atcagcttca tcagcactaa tactcagtgt tgaaattcca taaagcaaag ccaacaaatc
     1921 aagactaagt aaaatgatga taagtttata atttttgatt ttttccataa tgaaaatttt
     1981 acaaaattaa acttaaaata tcaatgcaaa tcatataaat atcaaatatc ttaaaaatta
     2041 acatcaaatt gattttagtt tttataagta taattttaaa caaaaaaagg caaaaatgca
     2101 aactattgat caaatttttc aaacacaaat cgatattaaa aaatctattt tcttatcttt
     2161 tctttgccct tttaaagatt ttaaattttt aatagaaacg ctaaaaaaag agcatccaaa
     2221 agctgttcat tttgtctatg cttatcgtgt tttaaatgat tttaatcaaa ttgtagaaga
     2281 taaaagcgat gatggagagc ctaaaggaac ttctggaatg ccaactttaa atgttctaag
     2341 gggctatgat cttatcaatg cggctttaat cactgtaaga tattttggcg gtataaaact
     2401 tggtacaggg ggacttgtaa gagcttatag cgatgcagca aatgccgtga ttaataattc
     2461 ttctttactt tcattcgaat tgaaaaaaaa tatatccatt gctattgatt taaaaaattt
     2521 aaatcgtttt gaatattttt taaaaactta ttcttttaat ttcacaaaag attttaagga
     2581 ttgcaaagct atattacata tcaaattaaa tgaaaaagag gagcaagaat ttgaaatttt
     2641 ttataaaaat tttgcacctt ttgaaataga gaaattataa attcttgcaa gtaaatacaa
     2701 aagctccaaa atggagcttt tgattaaatt gcgttcaata aatcatttaa caaagtatta
     2761 ttcttacttt gttcatttgc accttgttgc acaagatcat tgtgaacgct agcactttga
     2821 gctctcatag acaactcacc ttcattttgt ctaaaacgat aagcgtaaac atttgacatt
     2881 tgagcataat tacttaaatt tgaatttgag ttttgcgcat tgctttgaaa actattgcta
     2941 gaatttaaag catctccgct tgacttctca tccgccttat ttaatatatc cataaaatca
     3001 gattttccag atgaagaata atcttcaacc tgtttatcca cctgtttata ctgaccacta
     3061 atagcatcgt attcatacga gctgatcgtt ctataattta cctgcatagt tttctccttt
     3121 caaaatatgc aaaaactata caagcaaaaa gtgttccttt tttatgcaaa aattaatgtt
     3181 tttcaatcat gatgagtagg caaatgctcc acatcaagct cattattagc tataaattct
     3241 tccttggctt ttttacagtt ttcatcacgc attttgcggt attcattgcg aatcgtgatt
     3301 tctttatcgc ttaaaggtct atcttctaaa aaactaatat gaaaataagt atcatcgctc
     3361 tttgaataag ttttataaaa atctatataa tcaaaataat ccttgccatt atcaaactct
     3421 acgacctctt ctatataaat cgtaggtcca aaacccttgt gattttgcgt atagtgccca
     3481 aaacctgcgc tgtattgaat tctaaattta gccatcattt tctcctaaaa attcttgata
     3541 agttccacga aaatccgtaa gcttaccatt ttctaaatgc caaattctat tagcaaaagc
     3601 agaaactaac tccctatcgt ggctgataca aagcactaca cctttgaaat tatacaaagc
     3661 ttcacccaat gcaataatac tttcaagatc taaatggtta tcaggttcgt ctaaaagcaa
     3721 gaaattcgga cgctctagca ttaaacgaga aagcattaaa cgatgttttt cacccccact
     3781 taaacttgct gccatttttt cttgatcgct gccactaaaa agcattctac ctaaacactt
     3841 gcggatttca tctagatctt taaatttttc actcataagc cattcataaa gtttcaaatt
     3901 ttcacaaatt aaattacttg tatcttgagg aaaatatcca agctctatag ttgccccaag
     3961 gtgcatagat ccagtatctg gacttatagc atgagcgatg atttttgcca aagtactttt
     4021 acccacacca tttgccccaa tcaaagcgat tttatcattt ttttctattt ttaactccaa
     4081 gtttgaaaat agttgtttat cataagcctt gcctatacct ttaaattcta aaacttcatt
     4141 acctatttca cgattggttc taaacactat actaggatct ctacgacttg aaattttaat
     4201 ctcttcaagc tctagttttt caagtgcctt agcacggctc gtagcttgtt ttgccttaga
     4261 agcattcgca ctaaaacggc gaatgaaatt ttctaattct tctctttctt ttaaggtttt
     4321 atcacgttta agctcagctt gttttgccaa aagcgttgaa gccatatacc aatcatcgta
     4381 atttcccgca aaatcacgaa tttgtttaaa atccacatcc aaaatccttg tgcaaatttt
     4441 atttaaaaaa tgtctatcat gagagataac aaccaaagtt ccttcatgtc ttaaaagctc
     4501 attttcaagc caagaaatcg cctctaaatc aaggttattt gtaggctcat ctaaaaaaag
     4561 cacatccgca cccaaaaata aaacttgagc tagtaagact ttaaatttat ccgcactttg
     4621 caaggtgctc atcaaagcat caaaatcttt aatctttaaa gaacttaaaa ttttttcaca
     4681 acgcgtttca caatcataat ttggatcttc ttcagccgtt attatctcaa gctcacctaa
     4741 acgctcattg atctcatctg taaattcctc gctcatataa agcttttctt tttcttttaa
     4801 agcctcatat aaacgcttat ttgcacacat caccgcatct ttgatggtgt agttttcaaa
     4861 agcaaattga tcctgtccta aaactgcgat ttttaaacct tcatcaaata ctatttcacc
     4921 actacttgac tcaatttctc ctgaaagaat ttttaaaaaa gtcgattttc ctgcaccatt
     4981 agcaccaata agtccgtatc tttgtcctct aacaagcttt aaattaacat tttcaaataa
     5041 aagctgattt gcaaaacgca tagtaagatt ttttacttca accatgattt tccttaaatt
     5101 ttttacttat aaaaattttt aagaaattgt agcgaaaaag gcttgaattt ttaattt
//
LOCUS       DAZAND010000099         5156 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.100, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000099 DAZAND010000000
VERSION     DAZAND010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5156
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.100"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..395)
                     /locus_tag="ACHDOB_001544"
     CDS             complement(<1..395)
                     /locus_tag="ACHDOB_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN3326456.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKI
                     PIILSTNIKDLNINGFEELELDYFDFEEF"
     gene            complement(460..909)
                     /locus_tag="ACHDOB_001545"
     CDS             complement(460..909)
                     /locus_tag="ACHDOB_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HFN3326457.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            complement(1036..2256)
                     /locus_tag="ACHDOB_001546"
     CDS             complement(1036..2256)
                     /locus_tag="ACHDOB_001546"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HFN3326458.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(2250..3074)
                     /gene="galU"
                     /locus_tag="ACHDOB_001547"
     CDS             complement(2250..3074)
                     /gene="galU"
                     /locus_tag="ACHDOB_001547"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HFN3326459.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGKPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVIFGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEIQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(3156..5129)
                     /gene="acs"
                     /locus_tag="ACHDOB_001548"
     CDS             complement(3156..5129)
                     /gene="acs"
                     /locus_tag="ACHDOB_001548"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0016208 - AMP binding [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HFN3326460.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQALEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPDEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDAIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSGVVETIVKLAKAEFE"
BASE COUNT         1659 a          999 c          664 g         1834 t
ORIGIN      
        1 ataaattctt caaaatcaaa ataatcaagt tcaagctctt caaacccatt tatatttaaa
       61 tcttttatat ttgtacttaa gatgatggga attttaattt tttctaaatt agggataaaa
      121 tccaaattat aaaggcaaag aattttaatt tgtaaatttt cattcagaaa atcagcaagt
      181 ctttctaaac tttgtttttc aaagcgtgta tcatataaat ctaaaaacaa aatttcactt
      241 gctttaaatt gagataaaaa attaaaaata agtgtttttt taccacaaaa tcgtgggcct
      301 tttatgataa tatttggttt tgaaatttga ttttttcttt cataacttac ttcaaattta
      361 gggtgatttt cataaaaaaa attaagtact ttcaatttta tcctttaaaa aaggatatta
      421 taacctagtt tgtataattg gggcataaag ccccttaaat tacattttgc aagcaccctg
      481 taaagtagca cctatcatcc aaagactttt ttcatatttt gcaatatttt cttgcgcaaa
      541 agcagctgtt gtggtatcac tttctttttc tgctgcttca ttgagttttt taaattctgc
      601 taaaagatat tcataatctt gtttgatcag ttctatgact tcaagcggag taaagcaatc
      661 ttttgcaact tttggacttt ttgcattttc cattaaaact ttttggcaag tgatagcttt
      721 ttcgccaagt tgtaaaactc tttcagcaca actatcaaaa agttctgcca tttcttcata
      781 agctttttct gtgtactcgt gtatagaaaa aaattgcaaa ccttttacat tccagtgata
      841 attatgaaat ttaacccata gatgatgagc atctgcttgc atttgtaata attgttttgt
      901 aactgacatg attgactcct ttttttaatt tttaaaatta taacataaaa ttcttaaata
      961 ataattatta ttaattaaaa atttttatta taattttaac ttaaaattat tatactcttt
     1021 tttaatgaat tttgattaag aatttaatat attttttaag atcaactttc caacttccac
     1081 accaggttga tcataggtgt taatccctag cataacaccg caagttgaag taaaaagttc
     1141 ataataatac atcaaatatc ccgcatgcca agcatcaagt ttttcaagtt ctatcacatc
     1201 aacactcaaa ttttcagcga ttaaagcgtg catagttgca ttacattgag cgtttaaaag
     1261 ttcgtgaaga ttgactttat tacttaaaga atctaaaaat ttaaaatgaa tatcagggat
     1321 aataggtgct ttttgagcgt ctttgatttt taaaaaagtt acagttttat ttttaggtcc
     1381 atccataatg agttgtaaaa aactatgctg atctcttgct ccaatgagtg caataggagt
     1441 taaacctata cgtttatagc cttgcttttt acctaaactt tcagcaataa gctggatata
     1501 ccattcatta aagcctttaa aagcatcact atatgaaaaa agtacattga tattggcatt
     1561 tttgtgtgtg caataatgat aggctttttg taaaatttca tcttttttat gagtaaaaaa
     1621 atcttcaaaa caagctttag ctccttctaa aagagctttg gcattatagc cacaaaaaca
     1681 aagcggaact atacctacgg ctgaaagtat gctaaaacga cctcctacat ttgcagggat
     1741 aaaaaagcat ttaataccta aattttcacc ttcttgatga agttttgaat ccttatcggt
     1801 aataaaaaca aagtattttt ttaattcttg catatcaagt ttaaaatgtt caataagaag
     1861 tttaaaaagc gatacaactt ctatagtact acctgttttg ctgatgatta aaaacaaact
     1921 ttcctcaagc ttgatttttt ctaaagtctt attaaaagaa tgtgaacttg tgttatcgag
     1981 tataaaaagt tctctttggt tgcttttttc attaaaaagc atatcacgca aggcttttac
     2041 accacaactt gaaccaccca ttcccactaa aacgatattt tttatgtgtt ctttgtcttt
     2101 gataaaagcc aaactctcat cgattaaatt caaacttgta tcaataagat gataataccc
     2161 tatatctcca ctttttacct catcattaat acgatttgca taagagctta tagtatgaat
     2221 ttcactttgt ttaaaaaaaa gtgtattgtt taacatttac ttttctcgta aaaataattt
     2281 gtagcctcta caaagccttc tacacttcca caatcaaagc gtttcccttg aaatttataa
     2341 gctaaaacca taccattggt tgcttgagtt aaaagcgcgt cggtaagttg aatttcgcca
     2401 ttttttcccg ctttagtatt ttctaaaatt ccaaaaatat caggagttaa aatatatctt
     2461 cctatgatag caagattact tggagcttca tcaggacttg gtttttctat catagaatta
     2521 accatgataa gattttcttc tacaaaattt ccaaaaatta ctccatagtt tgaaacttgt
     2581 tcttttggta cttccatcac agctatgatg gtgcagcgat atttttcata aatttttacc
     2641 atttgagcca taacatttaa gccttcttcg ttgacacaca aatcatcagc caaaattacg
     2701 ccaaaagctt catcaccaac caaaggttta ccttttaaaa ccgcatcacc taatcctttc
     2761 atttgatttt gtcttgtaaa agtaaaggtg caacgattga tcaaagagcg aatttcatca
     2821 agtaagtatt ctttttttgt acctgaaatt tgatgctcaa gttcataaga aatatcaaaa
     2881 taatcctcca aagctctttt tccacgccct gtgacaaagc ccatattttc cattcctgct
     2941 tccaaagctt catcaacccc ataatggatc aaaggcttag ttaagatagg taacatctct
     3001 ttaggtaaag tttttgttgc aggtaaaaat ctcgtcccat aacctgccgc agggaaaata
     3061 caagtttgaa gcataaaaat ttccttttat ttttttatca ttatagctta tttttatgaa
     3121 tttttatgca acaaggcaaa gttctttttg ccttgttatt caaactctgc cttagctaat
     3181 ttaacaatag tttctactac tccagaatct tcgagcgttg aaatatcctg tttgatttct
     3241 tcacctcttg ctatagttct taaaattctt ctcattattt taccacttct agtttttggc
     3301 aaacctggag tataaagaat tttttctatt ttagctatag gtcctatttc tactcttaaa
     3361 atgtcattaa gttcttttaa agtttctata gctccgccaa gatcacaact ggatgcagga
     3421 cttaaaacca caaaagcaaa cagtgactcg cccttaatcg catccaaaat actcactaca
     3481 gctgattctg ctacacttgg atgtttagca atagcgcttt caatttcagc cgttcctata
     3541 cgatgtcctg caacattaac cacatcatct gttcttcctg tgatagttat ataaccattt
     3601 ttatcataaa aagcaccatc gccactaaaa tatacagctt ttccatcttt tttagcttga
     3661 gaaaaataac tttctatata gcgttcatca ttaccccaaa ttccacgaat catcgaaggc
     3721 caaggtttgg ttatacaaag caatccatct tcaccttcat cttttttatt gccttcttca
     3781 tcaataactt ctgcaaaaat tcctggcaaa ggcaaggtag cacaacctgg ttttaaagga
     3841 gtagcgcctg gtaaaggcgt gatcatatgc ccacctgttt ctgtttgcca ccaagtatcg
     3901 actataggac ttttagttcc ccctatttca tcataaaacc acttccaagc actaggattg
     3961 ataggctctc caaccgttcc aagcacttca agcgtactta aatcatattt tcttggctca
     4021 tcaggtgcat cagcatgaag cattcttatg gcagttggcg aagtgtagaa tttgcttatt
     4081 tgatactctt ctatcattct ccaccaacgc ccagaatttg gataagtagg agttccttca
     4141 tgcattatag tcgttgctcc acatgctaaa ggcccataaa ctacataagt atgtcctgta
     4201 atccaaccca catcagcact acaccaataa ttatcataat ctttaatatc aaaaacccat
     4261 tccatagtca tttgtgccca aagtatatat cctgcacttg catgcataac tccttttggc
     4321 ttgcccgttg atcctgaagt gtaaagcaaa aacaacaaat cctcgctatc catgatttcg
     4381 ggttcacact tataagactc atttttcaca agttcgttat aaacatagtc ccttccttta
     4441 atatattcta taggctcatt attgcgtata actataagta ctttttctac actttcacac
     4501 ccttcactta aagccttatc tactgcaggt tttaacatat aaggtttgcc acgacgaaaa
     4561 gcaccatcag ccgttactac aagtttagct cctgcatcta taattctatc tcttaaggct
     4621 tcaggagaaa accctccaaa taccacacta tgaatagccc caatccttgc acaagctaac
     4681 attactatag ctgtttctgg aatcataggc atataaatta caaccctatc gccttttttt
     4741 actccgaatt ttttaagcaa attggccgcc ttgcaagttt catgcaataa tcttctataa
     4801 gtataaactt cataatcccc catttcacct tcaaaaatca aagcagcttt attgcgtctt
     4861 gttttcatat gacgatcaag acattgataa cttacattta aagttccacc ttcaaaccat
     4921 ttataaaatg gagctttatc ctcatttaac actcttgaaa aaggcgaaaa ccactcgatc
     4981 ttctcaagtg cttgtctttt ccaaaaacct tcaaaatctt ccttggcttc atcgcataaa
     5041 tcatagtatt cacataaatt ttttatacga gcattacgag aaaattcttt acttggctta
     5101 aaaagctctt gattattttg attaagcata aaaactcctt tatggttatt tttaaa
//
LOCUS       DAZAND010000100         5032 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.101, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000100 DAZAND010000000
VERSION     DAZAND010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5032
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.101"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            65..278
                     /locus_tag="ACHDOB_001549"
                     /pseudo
     CDS             65..278
                     /locus_tag="ACHDOB_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780055.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body protein FliL"
     gene            complement(324..2195)
                     /gene="dnaK"
                     /locus_tag="ACHDOB_001550"
     CDS             complement(324..2195)
                     /gene="dnaK"
                     /locus_tag="ACHDOB_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HFN3326461.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            complement(2218..2748)
                     /gene="grpE"
                     /locus_tag="ACHDOB_001551"
     CDS             complement(2218..2748)
                     /gene="grpE"
                     /locus_tag="ACHDOB_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HFN3326462.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNRLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAINVECHDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKEEKEFDPNLHEAMFHVDSQNHQSGEVVTVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            complement(2745..3536)
                     /gene="hrcA"
                     /locus_tag="ACHDOB_001552"
     CDS             complement(2745..3536)
                     /gene="hrcA"
                     /locus_tag="ACHDOB_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HFN3326463.1"
                     /translation="MKSRDKKDLILDSIIQTYLLDNVPIGSNELNLNLCIPASTIRVY
                     LKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWKKEQDQDINIKSENFLKELSKEFE
                     IYCLVYGGRSLVLKEVLDLNAKFIVLDFKEEELVLKYEKEAWNFLQSLIGLDLFSIEK
                     IALRVHFMDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCGVHRYFKESLEF
                     EPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            complement(3753..4934)
                     /locus_tag="ACHDOB_001553"
     CDS             complement(3753..4934)
                     /locus_tag="ACHDOB_001553"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326464.1"
                     /translation="MDFIKFLNHFQPISKSSQQASVYKSFKLNLKPKILNEKDENSSS
                     FQDQKTDVAQTMLQRLEDEKVFNQKVSDKVKKAERGMTTIYFRDPITNNLVRSALSST
                     AINKMGIEFDKEDMTKRLDGSYILNGKAENFVAGWYADIAYTRAYVASDRNNDGYLED
                     YELEDTKSGFVAQETNLGLFVQSYTQLNGSVDTLFGFEKDFREMRPDDTKDTDYAGRT
                     IGLELDKMIRKDGDFDGELSFSETGMQAVKTKAPNSGWTESVGILTLTKFDQTNTMEI
                     KDILDKLGKGVKYDDLSEDEKSLLKMQLSDKIFDEVEDKETGNKKLVFNLDKFKIFYE
                     GFVDLFKQRSVKMLGLKPEDATKLNYDNLGEIVNEMKQTYFDTNSTSYGKIADLIKIW
                     A"
BASE COUNT         1534 a          957 c          598 g         1943 t
ORIGIN      
        1 atctaaaaag tttttagatt aattttattt tattactaag tttttagttt acttacgcta
       61 aaatgatttg gatgaagtta aattttcttt agaagatttt acaaaaattt tacctacatt
      121 attcaaacca ttttagtaaa agaaatacaa gaaaatgaat tatctgattt taaactggaa
      181 cttcaaaaag aattggttaa aaaatcaatg aaaaattagg tagcaagcta ataaaagaat
      241 tatattttac agattttgtc atttctttaa aattttaaaa aattttcaag ccttttaaaa
      301 aggcttgaat agagatttta ggattactca acttcagcgt cgattacatc gtcatctttt
      361 ttctttttat cattagctgt atttggctca tcttttttat acatattttc agctaactta
      421 tgagaaactt cacttaaagc tttcatttta ctttcaatct cttctttgct tgcattttga
      481 tttttcaaag tctcgcgcaa atcatcaaga gctttttgga tattttcttt atcagcagca
      541 gcaacttttt cacccagctc gcttaaagat ttttctactt gatgcgccaa gctatcagct
      601 gcatttctag catctacagc ttctttgcgt tttttatctt cttctttgtg aagttcagca
      661 tcttttacca tgttattaat ttcttcttcg ctaagtccgc ttgaacctgt gattttgatc
      721 tcttgagcct tacctgttgc tttatctttt gcactaacgg ttaaaatacc atttgcatcg
      781 atatcaaaag taacttcgat ttgtggcata ccgcgtggtg ctggtggaat tccttcaaga
      841 ttgaaatttc ctaaagattt attatcacga ctaaattctc tttccccttg taaaacattg
      901 atagttacag cactttgatt atcctcagcg gttgagaaaa cttgctcttt tttagttgga
      961 atagttgtac ctttttcgat aatcttagtc attaccccac ctagagtttc tatacccaaa
     1021 gagagcggag taacatcaag taaaagcaca tctttaacat cgccttttat aaccgcacct
     1081 tgaatcgccg caccaatagc cacaacttca tctggattta cagacttgtt aagatcttta
     1141 ttaaaggctt ttttcacttc ttcttgcact aaaggaacac gagtagagcc tcctaccata
     1201 acaatttctt taatctcatc ttttttaaga cctgcgtcgc ttactacttc attgatttta
     1261 gtgatggttt cagccactaa agaatcaatc ataccttcaa atttagctct agtaagtttt
     1321 ttaaccaaat gttttggccc acttgcatct gctgtgataa atggtaaatt aatttcagtt
     1381 tcattagctg agcttaattc ttttttagca ttttctgctg cttctttcaa gcgttgtaga
     1441 gccataacat catttttaag atctatgcct gtttcatctt taaattcatt agctagaaaa
     1501 tcaataagtt tattatcaaa atcatcgcca cctaagaaag cattaccacc tgttgctaaa
     1561 acttctacta cattatcacc ggtttcaagc acagtaacgt caaaagttcc cccacctaga
     1621 tcataaacca cgattttttc actatctttt ttatcaagtc cataagctag agctgctgaa
     1681 gtaggctcat tgataattct taatacatta agccctgcta tcgttcctgc ttcttttgtc
     1741 gcttttcttt gtgcatcgtt aaaatatgca ggcacagtaa taactgcatc tacaacactc
     1801 tcgcccaaga aagcttcagc atcttctttt agtttcatta aaacttttgc tgaaatttct
     1861 tgcggagtat aaattttccc tgcgatctca atagcacaag caccatttct ttcagtgata
     1921 tgataaggaa gtctgttttt agcttcttta gccgcgtctt cattgatcat caaacccata
     1981 attcttttaa tagaataaat agttttttca gggttagtta ccgcttggcg ttttgcacta
     2041 tctcctacta aaacctcgcc tttatctgta aaagctacca cagaaggagt tgtattttta
     2101 ccttctttat ttggaattac tttactctca ccgcgttcat acacagcaac acaagaattg
     2161 gttgttccta aatctatacc tataacttta ctcatttttt atccttttta ttaaaattta
     2221 ttttgctaca ctaactttgg ttgggcggat tacgcgatcg gctattttat agcctttttg
     2281 aagcacggta accacttcac cactttgatg attttggcta tctacatgaa acattgcctc
     2341 atgtaaattt ggatcgaact ctttttcttc tttaataaga gccactccat gcttttcaag
     2401 ttttttaaga aacaaatcta aagtgttttg cactccttct ttgattttta agctaatttc
     2461 atcatgacat tcgacattaa tagctgcttc taaagcatcc aaaacatcaa gcaaatcctt
     2521 tgcaaagctt tcatttgcat aagccatagc acttagcttt tctttttcca ttcttttttt
     2581 aatattttca aattcagcgt ttgcacgcat atatttgtct tttaattcat catagtcttt
     2641 ttgcaatctg ttttgctcaa catcttcgat attttgcaaa ttctcatctt gcaaatgttc
     2701 agaattttct gcgttttcat tttcaaattc ttgcttttgc tcgctcacgc cgcctccttt
     2761 atgtattgta atattttttt ataatccgta taaacactac ctgctaagat aatatttaca
     2821 tcttcgccca aaaactgcgc atccacctta agccccataa aaccttcttt aaataaaggt
     2881 tcaaattcaa gactttcttt aaaataacga tgaactccgc aatctaagag cttaacaaat
     2941 tcatcatttt gataaatttg ataagctctt tcttcattgc ttctatagca aatcaaattt
     3001 tgccttaagc tagctatttt ttctacaaga tccataaaat gaaccctcaa agctattttt
     3061 tctatactaa aaagatccaa tcctataaga ctttgtaaaa aattccatgc ttctttttca
     3121 tattttaaaa cgagctcttc ttctttaaaa tcaagcacta taaacttagc atttagatca
     3181 agcacttctt taagcactaa gcttctacca ccataaacaa gacagtaaat ttcaaattct
     3241 ttactcaact cttttaaaaa attctcactt ttgatattga tatcttgatc ttgttctttt
     3301 ttccaaaaac tttgccagta attttgcatt gtcaaaatag taggaattct accactactt
     3361 atatgaagct gagtgatcaa accctcgtcg ctaagccttt taagatagac gcgtatagtt
     3421 gaagcaggga tgcaaagatt taaattcaat tcatttgaac caataggaac attatctaaa
     3481 agataagttt ggatgataga atctaaaatc aaatcctttt tatctcggct tttcatagct
     3541 ctttccttaa atttttagca ctctattttt tgattgctag aagtattata caacattgag
     3601 tgttattttg tcaagtataa atataaaaaa atatacttaa ttttatttag tctatatgac
     3661 taaactttta ttagttgctt ttttataaga atacaatata tcaatatatc aaaataaaaa
     3721 taacaataca ctttacaaga taattataaa aactaagccc aaattttaat taaatcagct
     3781 atttttccat aacttgtaga atttgtatca aaataagttt gcttcatttc gttgacaatt
     3841 tcaccaagat tgtcataatt aagtttagtt gcatcttcag gttttaaacc tagcattttt
     3901 acacttcttt gtttgaataa atccacaaaa ccttcataga aaattttaaa tttatccaga
     3961 ttaaaaacaa gttttttatt accagtttct ttatcttcaa cttcatcaaa aattttatca
     4021 gataattgca ttttaagtag agatttttca tcttcactta aatcatcata ttttacacct
     4081 ttacctaatt tatccaagat atctttaatt tccattgtat tagtttgatc aaatttagtt
     4141 aaagttaata tacctacact ttcagtccat ccagaatttg gagctttggt ttttactgct
     4201 tgcatgccag tttcgctaaa actaagctct ccatcaaaat ctccatcttt tcttatcatt
     4261 ttatcaagct ctaagcctat agttctacca gcataatctg tatctttggt atcatctgga
     4321 cgcatttctc taaaatcttt ttcaaaacca aatagagtat ctacactacc atttaattgt
     4381 gtataagatt gcacaaaaag tcctaaattt gtttcctgtg ctacaaaacc acttttcgta
     4441 tcttcaagct cataatcttc taaatatcca tcattatttc tatcgctagc cacataagct
     4501 ctagtatatg ctatatcagc ataccatcca gccacaaaat tttcagcttt tccatttaat
     4561 atatatgatc catcaagtct tttagtcata tcttctttat caaattcaat tcccatttta
     4621 ttgatagctg ttgaacttaa agcactacga acaaggttat ttgtaatagg atctctaaaa
     4681 tatatagtag tcatacctct ttcagctttt ttcactttat cacttacctt ttgattgaaa
     4741 actttttcat cttctaatct ttgaagcata gtttgagcta catctgtttt ttgatcttga
     4801 aatgaagagg aattttcgtc tttttcatta agaatctttg gttttaaatt taacttaaaa
     4861 gatttatata cactagcttg ctgagaagat ttagatatgg gttgaaaatg attaagaaat
     4921 tttataaaat ccattttgat gccttcaaat tttcgacatc ttttcaaaaa tattgctaat
     4981 atattttacg taattttaac ttagaaaatt ttaaattttt atcctctatt ac
//
LOCUS       DAZAND010000101         5008 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.102, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000101 DAZAND010000000
VERSION     DAZAND010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5008
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.102"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..446
                     /locus_tag="ACHDOB_001554"
     CDS             <1..446
                     /locus_tag="ACHDOB_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326465.1"
                     /translation="VFLFFLINSSQLINPFTGVFSSDKLYESQFEKSLNDLNTSAIIN
                     LASILQSDFNLHLKDQNISFTELNSAKALIVANKENLLKLNDANLNITKEVLGEKYTE
                     LLKTINQDKITENTIKSTSVLYGIILLLCIFSLQKTARKNSIVPS"
     gene            complement(476..1177)
                     /locus_tag="ACHDOB_001555"
     CDS             complement(476..1177)
                     /locus_tag="ACHDOB_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HFN3326466.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEINYNSPNIID
                     RLSDPYSNDTQAAYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDDYDIEY
                     LYTKLNDIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSINNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1174..2376)
                     /locus_tag="ACHDOB_001556"
     CDS             complement(1174..2376)
                     /locus_tag="ACHDOB_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HFN3326467.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGVNALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLANAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            2479..3828
                     /locus_tag="ACHDOB_001557"
     CDS             2479..3828
                     /locus_tag="ACHDOB_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HFN3326468.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLAQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(3852..4895)
                     /locus_tag="ACHDOB_001558"
     CDS             complement(3852..4895)
                     /locus_tag="ACHDOB_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFN3326469.1"
                     /translation="MKKHILLLGLCLSLSLSAKSMSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNVLNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         1815 a          821 c          820 g         1552 t
ORIGIN      
        1 tagtattttt attctttttg attaatagct cacaacttat aaaccctttt acaggtgtat
       61 tttcatcaga taagctttat gaaagtcaat ttgaaaaaag tttaaatgat ttaaatacga
      121 gtgctattat aaatctagca agtatattgc agagtgattt taatctccat ttaaaagatc
      181 aaaatatttc ttttacagag ttaaattcag ctaaagcatt gatagtagca aacaaagaaa
      241 atcttttaaa attaaacgat gcgaatttaa atataaccaa ggaagtttta ggagaaaaat
      301 atacagaact tttaaagact ataaatcaag acaagattac agaaaacacc ataaaatcta
      361 ctagtgtttt atatggcatt atccttttgc tttgtatttt ctcactccaa aaaaccgcac
      421 gaaaaaattc catagtccca agctaggcct taaagcttag cttgaaattt tatcatcagt
      481 cctttaagta gtattctata gtagaaacca ctcttatggt tttgatgtaa ggggtgtttt
      541 tatctctatt gttgatgcta aattgtcctt gagaagcctt ttttatcttg cctagatggc
      601 tgtttgagtc ttgtgcgaat tttatcgctg catttctagc attgagcgtt gcttcttcta
      661 tcatttgtgg ttttatatca tttagcttgg tgtaaaggta ttctatatca taatcatcga
      721 tttttgttac tataccaaat tttgcaagac ttgaaatatt ttctagtatg ctttttccaa
      781 gttttacgtt ttgcgtatag atgagtaaat tcgcagtgcc tatgtatcgg tatgcagctt
      841 gagtgtcgtt gctataagga tcacttaaac gatctatgat atttggcgag ttgtagttga
      901 tctcatcttc ttttacgcct tgttctttta aaaatttgat gatattttct ttatcttgtt
      961 ctagttcttc gtataaattt gtaagattgt tgtttgatct tgtgaatttt ataggaagta
     1021 tcaaagtatc cgcttcgact tctttttgac ttaaaccctt tacgcttaca cttctttcaa
     1081 gtgttttaaa atcgcttaaa gccttgttaa atccaaaagc tagaatcaaa cttgctaaaa
     1141 ctatggctaa agccataaag atattatttg ttttcatttt ttctccttta ttttgattag
     1201 aaaatatatc atatttgcaa ccaatacgca agcacacatt acaaaagcaa ggattatcgg
     1261 cgtatttgcg ttaatagccc caaccacaaa agaaataagc cctgcaaaac caaattgcac
     1321 cgttccaagc accgcagaag cagttccgct atgttcttta aaccttgcca tagccaaagt
     1381 cgtggtattg ggtgcgatga aaccaagcat agcgatactt gtaaaaatac taagttcaaa
     1441 aagcaagaaa tttggatgaa aaaaggcatt tgcaagtaaa atcacagtcg atataaacat
     1501 tatcatcaaa gcttttgcca aaattttttc gctttcgtat tttaaaacca atctcgcatt
     1561 gatatttgca cagatgacaa aacctaaagc atttacccca aaaagcaagg caaatttttg
     1621 ctcacttaag ctaaaaaact gcgtaaaaac aaagcttgat cctgtgatat aagcaaacat
     1681 cgccgccaaa gcaaaagaag cgcatagtat ataaactaaa aagcgtttat cgcttaaaac
     1741 aaatttgtag cttttcatcg cttcatgatg ggaaaatttt ttgtttttaa gatgaggtgc
     1801 ggactctttt aaaccaaaaa gtatcatcaa aaaaagtaaa attcccaaag caaacaaagt
     1861 cgcaaaaata ctatgccatg aaaaatactc tagcaaaatt cccccaaaag ttggcgaaag
     1921 cataggagca agagaactaa aaaccatcat caaagcaaaa atccctgcag cttctttgat
     1981 ctcaaacaag tcattgacaa tagcccttgc gataaccaca cctgcacaac ccccaagtgc
     2041 ttcaaaaaat ctcaaagcga taaaagcata aatatcatcg ataatcacac aaaacaaact
     2101 cgaaacgatg aagaaaaata tccccaccaa agctggaatt ttacgcccaa aaatatcact
     2161 taaaggccca tatataagct gtcctaaagc aaaagcgata aaaaaacttg cgatactaag
     2221 ttgggttaaa aaagaattag tttgaaaact ttgctccaca tgagaaagtg caggcaaata
     2281 catatctgta gaaagtggtg ctatgcttga catcaaggca aggataacga tgagtttaaa
     2341 tttagcaaag ccgtgaattt tggtgtgttt ttgcatttgt aatcctaatt attctaaaag
     2401 aatgatttta acaagtcaat cttagaataa tctttgtttt tctatgttaa atttagagaa
     2461 aaattctaag gaaattttat gcaaaattta aaccaaaatg aacaaatcaa atgcccaagt
     2521 tgtggaagtt ttatcgatat cagcactgct ttatatgctc aaattttaga taaagctaag
     2581 caagaaatgc taaaacaaaa aaaagaattt gatgatgagg taaatgctaa aagagctgaa
     2641 tataccaaag ctttaaatga tttaaaaact caaaagatag aacaagaaaa actcataaac
     2701 gagcaagtaa gccaaaagct tcttttagaa aagcaaaaat ttgaacaaga acttctcgcg
     2761 caaaagcaaa atttccaaaa agaattcagc gagaaattta acaaagagca tgaaaatgaa
     2821 atgaaaatca tgcaagaaga actcgagaaa aaaagcaaag aacttagcga gtttttaagc
     2881 ataaaggctg aaaatgaaag gctaaaaaga gagcaaaaag aaaatgaaga aagattgaaa
     2941 tttcaagcca aagaagaggc ttttaaagaa tttaaagaac aagaaagcaa aaatttggaa
     3001 tttgaaagag aaaaaatgcg tcttgaattt caaaaaagta ctcaagagca agatcttaaa
     3061 tacaaagaac tagaaacgaa ttttaaaagt gtagctcaaa agctagaaga cgcacaacgc
     3121 aggatagaac aaggctcaca gcaactccaa ggcgaagcag ccgaactact catagaagaa
     3181 tacatacaaa gtgagtattt aagcgatgaa gtaaaagaag tgccaaaagg cgtaaatgga
     3241 gcggattgtc tgcatatagt aaaggataat tttggaaata tttgcggaag tattttatat
     3301 gagagcaaac gcactaaaga atttaataaa gaatggcttg ataagcttaa gctagacagc
     3361 atagccgcaa aaagtgatat agcggttttg atcacaaaga ctatgccaaa agataaagaa
     3421 aaaacgcatt ttaaagaagg aattttgatc tgtactttta atgaattcaa aggtgtttta
     3481 gcagtgctta gagaaagcat tataaacgct tataaactca aaaatgcctt gcaaaacaaa
     3541 gatgaaaaaa atcacatttt atacgaatac ttaaattcta aggaatttaa cacgcaaatc
     3601 acttttatac tcaaaactta ccaaaatatg aaagaagagt tagaagctga aaaaagggct
     3661 ttgcaaaata tatggaaaaa aagagaaaga gctatagaaa atctaagttt taattccact
     3721 gccatagtga gttctttaaa tgcgatattt agtgatttac aaggtggaaa tttgataggc
     3781 gaagaaggga ttaaaagtct tgaaaattta gccaaagatg aggattaatt ttgggcttag
     3841 cccaaaatta atcattctcc tgggaagtga tttggatttt tccaaggtcc gtattttact
     3901 tttatgtatt ctttagggtc taaattttgt tgcggtgagg caaaatactc aggttttaat
     3961 gatggggatt tgctataagc tgtatcaagt cctgcacgat tttctgtagt ggttataggc
     4021 attcttacaa aacctgtatt gacataagct gctatatcta gtgcatcttc atcgcttaat
     4081 ataggattat ccgcactcgc accaaaaggc atggctgatt ttaaaaatct tgctaaaaat
     4141 ggtatcatag ccatgtgtcc accatcagga tagataagta aagatggata taaatgtccg
     4201 ctaccttgtt cgtaattatc attttttacc ccaagtcctc tttcgccatg gcaagcaacg
     4261 caattttctt caaagagttt ttttccacgc acagggtcag ctgggcgatt tggaaaattc
     4321 atcttagcga aaaaatctcc ttcaagcttt acgccgtctt tgatgccata agcttctttt
     4381 agccatttaa aataagctaa aattgctttc atttctttag aatcattagg aaatctatga
     4441 gagtcagttc cacccattcc gcgaattcta tcttcaacag agatgatttt catcgtttct
     4501 atatcaagtc ttggataatt gtttaggaca tttaaaaatg gaataacata tttttttgtc
     4561 cctggtaaac cattgccgtc attgtccatg tgacaggaaa tacagtttac ttcgttgctt
     4621 gtctttttta gcttgctata gggtcctaga gtactttctg tcttgcttaa aagctctatg
     4681 ccataacgga ttaaatcccc ttgcttacct tttggaacat cattgatgct taaattttta
     4741 tttggccatt cttgcacagg tcttttggaa agttccttaa aatactctac tccttccttg
     4801 tcgcttaatt cttctcctac tttgtaatca ctcatgcttt tagcactaag actcaaacta
     4861 agacataaac caagcaataa aatgtgtttt ttcatgattt tcctcctttt tatttgcagt
     4921 tcaaattgat tttagtgtat tttttcttaa atattaagca taataagaat aatttaaata
     4981 aaattaaatt ttagagtgtt actaaaag
//
LOCUS       DAZAND010000102         4922 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.103, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000102 DAZAND010000000
VERSION     DAZAND010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4922
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.103"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            180..371
                     /locus_tag="ACHDOB_001559"
     CDS             180..371
                     /locus_tag="ACHDOB_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326470.1"
                     /translation="MICPRCANEKTKVLKTIKSDTNERFRRCLKCGYTFMSIELIKVD
                     NWAKYYIKETQKGLFDEAL"
     gene            358..837
                     /locus_tag="ACHDOB_001560"
     CDS             358..837
                     /locus_tag="ACHDOB_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HFN3326471.1"
                     /translation="MKRFELKGLENFLKKCENLENEQKQIILKEIIAETLYKESKENL
                     EKEQDSNAKKWAPLKQSTLNSRKAQKIMHTKKLFATGSMQSSLHSGVENDRAFVALNA
                     TYKGFAYASVHQFGSKNVIARPFLPIDENLNINKRVARAMEEETKDMLWTLFKQTLK"
     gene            complement(976..2109)
                     /locus_tag="ACHDOB_001561"
     CDS             complement(976..2109)
                     /locus_tag="ACHDOB_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor head protein"
                     /protein_id="HFN3326472.1"
                     /translation="MSNIFNKSVDEAYSYLENKGLKISFKYHEIKKQAHDRAFSAAGI
                     MKTDVLNDLHEELKKAMKEGRNFNEFKNNLKELLTSKGWYGKKEITNPKTGEKRTINI
                     NANRLKTIYHTNMQSAYAKARAKQLSTYSYKTYWVYKCALLEDSRSEHKKMHNCAIHR
                     DDPFWKTSFPPNDYNCKCKVIAVSEKEARAKYKILENPKSIASKNFAYDKRENSQIPK
                     ETRISLDESLENLPKIQNYENLSDKELIDKVYEAFNVKKGDLLVDKIGDVISLDDDFF
                     YDKKKQTTKIKKQNRHFYLDYFPKLINDPDEIRLSMDADPRFKGFTKKTYIKYFYDNG
                     VKALVMVLNQKGNQINNKTMFLSEDNSYFKEILNQGKTIYKKQ"
     gene            complement(2226..3608)
                     /locus_tag="ACHDOB_001562"
     CDS             complement(2226..3608)
                     /locus_tag="ACHDOB_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HFN3326473.1"
                     /translation="MRILNKTARKSVASSVDFDSIIAALNSENFSELISIYDYFKRFD
                     PQIASEVMKRRFKMCSFPMFITCKDETQRIFLQNYISKSDFRKFVFEMSAAVVYGFAA
                     FLLEWKVKDLNVFPKLKYISPRFFSMDDKERLFIYNESKKLFVDECDDIFLHLHPSDS
                     GSFIEQSLFYNVVSIAVLKQLAMSKNISYLDNLSVPPIIAKTTNANSDKEIEELLMQL
                     SNLRSASVGIFNKDDMVELLNSGLSTSTFTDFLRYCDEAISKLISGQVLAGNAVQNGT
                     QALGNVHEEVRLNVGEMDTLFLSKSIQKLLEQILKLNFAKPAEFEFVFDTNKEVDEQY
                     LAGVYSTISSMGYEIPAEFLAKTFRIEGLKKKEVSTENYAFNSLMLEKNNRLSKDKIE
                     LNSSAEDEISDEIYEKIKAFWEECQSYEELEERIFKEYPNISFEKLKESLDKKIALAS
                     MQALLDAGNE"
     gene            complement(3605..>4922)
                     /gene="terL"
                     /locus_tag="ACHDOB_001563"
     CDS             complement(3605..>4922)
                     /gene="terL"
                     /locus_tag="ACHDOB_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006802512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HFN3326474.1"
                     /translation="KKNNHLCFKAYRGSAKTTLLVRLFTLYSLLSNKKQYALIISSTL
                     DIASESIASLKTELEENAKLINDFEIKLGDEWTSEAIVFTSFKIHKKIKAFGSGKKIR
                     GTNYLGKRPDLIICDDIENDENVESKTQRDKLYKWFNKAILKLVARTQENYLYLVVGT
                     ILHQDSLLNRLNDDKRFLIYDFPLVLSFPDKLDLIDKNNILKSDLKGFKLDDENLNKI
                     EILKEYFADTQSFFSEYQNKALSTENAIFSEYKIIEKEQDFDLVVLGIDPALGKAKGD
                     YFAIAELKKVDKNKFHLKASGYKISPSKMIDVILKLYIKYLSLGKIVKIAIETIAFQE
                     FFKDKLKEEALKLGIILSICELKNKVAKELRIDSLAPYINDGTILIDNNSNLLIEEML
                     TYPKAAHDDLLDASEMAFRIACSAANADYKAINRILSKRKIKKGFL"
BASE COUNT         1598 a          817 c          637 g         1870 t
ORIGIN      
        1 ctatttttag tttttacaaa ctttgtaaaa aaactttaaa aaaagatata tactcacttc
       61 aaactcttag caaaaaagac tgcactataa tgcttgtggt tttagaaaag attgctaaaa
      121 ctaaataaaa taattaaaaa tagatataat cctttaaaag cttttttaaa ggatttattt
      181 tgatctgccc tagatgtgca aatgaaaaaa ctaaagtctt aaaaactata aaatcagata
      241 ccaatgaaag atttagaaga tgtcttaagt gcggatacac ttttatgtct attgaactta
      301 tcaaagtaga taattgggca aaatactata taaaagaaac tcaaaaagga ctttttgatg
      361 aagcgctttg aattaaaggg tcttgagaat tttttaaaaa aatgtgaaaa tctagaaaac
      421 gaacaaaagc agattatttt aaaagaaata attgctgaaa cactttataa agaaagcaaa
      481 gaaaatctag aaaaagaaca agactctaat gctaaaaaat gggcaccttt aaagcaaagt
      541 acattaaatt caagaaaagc acaaaagatc atgcatacta aaaagctttt tgcaacaggc
      601 tctatgcaaa gctctttaca tagtggagtg gaaaatgata gagcttttgt agcacttaat
      661 gccacctata aaggctttgc gtatgcaagt gtgcatcaat ttggctctaa aaatgtaata
      721 gcaagacctt ttttacccat cgatgaaaat ttaaatataa acaaaagagt agccagagca
      781 atggaagaag aaactaagga tatgctttgg actttgttta agcagacttt aaaataagat
      841 tttttataat gtctaaaagt caatcattat gccctttggt cgctttaagc gatgtttgga
      901 tagactagat tttatctaaa ccaaaaccca gatgcgacgc gggaacatca tgctcagggc
      961 ttagtcgctg attgattatt gttttttata aattgttttc ccctgattta aaatctcttt
     1021 aaaatagcta ttatcttcac ttaaaaacat ggttttatta ttgatttgat tgcctttttg
     1081 atttaatacc atcacaagag cttttactcc attatcataa aaatacttaa tataagtttt
     1141 tttagtaaag cctttaaatc tagggtcagc atccatactt aatctaatct catcagggtc
     1201 attaataagc tttggaaagt agtctaagta aaaatgccta ttttgttttt tgattttagt
     1261 agtctgcttc tttttatcat aaaaaaaatc atcatctaag cttattacat ctcctatttt
     1321 atcaacaagc aaatctcctt tttttacatt aaaagcttca taaaccttat ctattaattc
     1381 tttatcactt aaattttcat aattttgtat ttttggtaaa ttttctaagc tctcatctaa
     1441 gcttattcta gtttcttttg ggatttgtga attttctctt ttatcataag caaaattttt
     1501 agaagcaatg ctttttggat tttctaaaat tttatattta gcccttgctt ctttttcgct
     1561 tactgctatg actttacatt tgcaattata atcattaggc ggaaaggatg ttttccaaaa
     1621 tggatcatct ctgtgtatag cacaattgtg cattttttta tgctcacttc ttgaatcttc
     1681 taaaagtgca catttatata cccagtaagt tttgtaagaa taagtgctaa gctgttttgc
     1741 tcttgctttt gcgtaagcac tttgcatatt ggtatgataa attgttttta agcgatttgc
     1801 attgatgttt atagtgcgtt tttctcctgt ttttgggttt gttatttctt ttttaccata
     1861 ccaaccttta cttgttaaaa gctcttttaa attgttttta aactcattaa aatttcttcc
     1921 ttctttcata gcttttttta attcttcgtg caaatcattt aatacatctg ttttcataat
     1981 gcctgctgca ctaaaagcac gatcgtgtgc ttgtttttta atttcgtgat atttaaagct
     2041 tatttttaag cctttatttt ctaaatagct ataagcttca tctacgcttt tgttaaaaat
     2101 attactcatt ctttaccttt tttaaccttc tttaacggcg gaagtgaatt ccgcctaaga
     2161 agcaactaaa ggctacccga cccttttgct aacgcaaaag ccccgttttg ccttgaccca
     2221 cctattcact cattgccagc atccaaaaga gcttgcatgg aagcaagagc gattttttta
     2281 tccagacttt cttttaattt ttcaaaactg atatttgggt attctttaaa aattctttct
     2341 tctaattctt catagctttg acattcttcc caaaaggctt tgattttttc ataaatttca
     2401 tcacttatct catcttctgc acttgagttt aattctattt tatccttgct aagacgatta
     2461 tttttttcta acattaaaga gttaaatgcg taattttcag tgcttacttc ttttttcttt
     2521 aaaccttcaa ttctaaaagt ttttgctaaa aactcagcag gtatctcata acccatacta
     2581 gaaatagtgc tataaactcc tgctaagtat tgctcatcga cttctttgtt tgtatcaaaa
     2641 acaaactcaa actcagctgg ctttgcaaaa ttaagtttta aaatctgctc taataatttt
     2701 tgtatgcttt tgcttaaaaa aagtgtatcc atttcaccca cattaagacg cacttcttcg
     2761 tgtacattac ctaaggcttg agtaccattt tgcactgcat ttcctgctaa aacttgtccg
     2821 ctgattaatt ttgaaatagc ttcatcacaa taccttaaaa aatctgtaaa agtagaagta
     2881 gaaagccctg agtttaaaag ctcgaccatg tcatctttgt taaaaattcc cacacttgca
     2941 cttcttaaat tgctaagttg cattaaaagt tcttctattt ctttatcgct gtttgcattg
     3001 gttgtttttg caatgatagg tggcacactt aaattatcaa gataagaaat gtttttactc
     3061 atagcaagtt gctttaaaac tgcaatgctt acaacattat aaaaaaggga ttgttctatg
     3121 aatgaacctg aatcgcttgg atgtaagtgt aaaaatatat catcacactc atccacaaaa
     3181 agttttttac tttcgttata aataaatagc ctttctttat catccatcga aaaaaatctc
     3241 ggacttatgt attttagttt tggaaaaaca tttaaatctt ttaccttcca ttcaagtaaa
     3301 aaagcagcaa aaccataaac tactgcagca ctcatttcaa agacgaattt cctaaaatca
     3361 ctttttgata tataattttg taaaaatatt ctttgagtct catctttaca agtaataaac
     3421 ataggaaaag aacacatttt aaaacgcctt ttcattactt cagaggcaat ttgtggatca
     3481 aagcgtttaa aataatcata aatacttata agttcactaa aattctcact atttaaagca
     3541 gcgattatgc tatcaaaatc aacactactt gctacgcttt ttcttgctgt tttatttaat
     3601 attctcataa aaatcctttt ttaatctttc ttttgctaag tattctattg attgctttat
     3661 aatctgcatt tgctgcacta caagcgattc taaaagccat ctcacttgca tcaagcaagt
     3721 catcatgtgc tgcttttgga taggttagca tttcttcgat aagtaaattt gagttattgt
     3781 ctattaaaat cgtgccgtcg ttaatgtaag gtgctaagct atcgatgcga agttcttttg
     3841 cgactttatt tttaagctca caaatactta gaataattcc cagttttaaa gcctcttctt
     3901 tgagcttatc tttgaaaaac tcttgaaagg ctattgtttc aatggctatt tttactattt
     3961 ttcctaagct taagtatttg atataaagct ttaatatcac atctatcatc ttgctaggag
     4021 atattttata gccacttgct tttaaatgaa atttattttt atctactttt ttaagctcag
     4081 caatggcaaa ataatcgcct tttgccttac caagtgcagg gtcaatccct aaaaccacaa
     4141 ggtcaaaatc ttgttctttt tctatgattt tatactcgct aaaaatagca ttttcagtac
     4201 ttaatgcttt gttttgatat tcgctaaaaa aactttgagt atcagcaaaa tattctttta
     4261 aaatttctat tttgtttaaa ttttcatcat ctaatttaaa accctttaaa tcgcttttta
     4321 aaatattgtt tttatcgatt aaatcaagtt tgtcaggaaa gcttagcaca agcggaaaat
     4381 cataaattaa aaagcgttta tcatcattta aacgatttaa aagactatct tgatgtaaaa
     4441 tagttccaac gactaagtat aaataatttt cttgtgttct tgcgactagc tttaaaatgg
     4501 ctttattaaa ccatttataa agtttatccc tttgcgtttt actttctaca ttttcatcat
     4561 tttctatatc atcacagata attaaatcag gtcttttgcc aagataattc gttcctctta
     4621 tctttttacc actaccaaaa gctttaattt ttttatgtat tttaaaactt gtaaaaacta
     4681 tggcttcact agtccattca tcgcctagtt ttatttcaaa atcattaatt aatttagcat
     4741 tttcttcaag ctctgttttt aaacttgcta tactttcact tgcaatgtct aaagtagaag
     4801 atataattaa agcatattgc tttttattac ttaaaagcga gtaaagagta aaaagtctta
     4861 ctaaaagcgt tgttttagca cttccacgat aagctttaaa acaaagatga ttatttttct
     4921 tt
//
LOCUS       DAZAND010000103         4867 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.104, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000103 DAZAND010000000
VERSION     DAZAND010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4867
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.104"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            79..1104
                     /locus_tag="ACHDOB_001564"
     CDS             79..1104
                     /locus_tag="ACHDOB_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HFN3326475.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            1198..2535
                     /gene="glmM"
                     /locus_tag="ACHDOB_001565"
     CDS             1198..2535
                     /gene="glmM"
                     /locus_tag="ACHDOB_001565"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HFN3326476.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEAKDIKLLEKEMKNVVEFFKKALNG"
     gene            2528..2998
                     /gene="lspA"
                     /locus_tag="ACHDOB_001566"
     CDS             2528..2998
                     /gene="lspA"
                     /locus_tag="ACHDOB_001566"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HFN3326477.1"
                     /translation="MAKTFKFIFYFWGAFVLVFVLDQWVKSLTLAGLRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIVVLFIYLFWQKTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            2982..3434
                     /gene="hemJ"
                     /locus_tag="ACHDOB_001567"
     CDS             2982..3434
                     /gene="hemJ"
                     /locus_tag="ACHDOB_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HFN3326478.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEIVKIQERKLYFYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSAKSGKYFRIYNEFPTIMFIIIALMMVIRPF"
     gene            complement(3431..4777)
                     /locus_tag="ACHDOB_001568"
     CDS             complement(3431..4777)
                     /locus_tag="ACHDOB_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HFN3326479.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPKEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKDKGFDFSSMYVGGGTT
                     LINEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQSEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYIFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
BASE COUNT         1633 a          625 c          835 g         1774 t
ORIGIN      
        1 ttttaataat atttattttt atttaagctc taaatgatta ttattttatt ttaatttatc
       61 tttaatagga gtttataaat gaaagtaaaa tcattgctaa tcgcatcctt agttgctttt
      121 tcaagcttaa atgctgcaag tcttatagat gaagctaaaa attcaggtct tgttgcctta
      181 ccaaaagatc aaaaaggcgt tgatgaaatt ttaaaacaaa atggagtaaa ggctagtgaa
      241 tttactcttg aaaaagcaga gcttggcaaa aagctctatt ttgaaccacg tctttcaaaa
      301 agtggtatca tttcttgtaa tacctgtcat aatgtaggac ttggtggaac agatggaatc
      361 agtactgcaa taggtcataa atggacagca aatcctcatc atttaaattc accaacagtt
      421 tataatgcag ttttaaataa tactcaattt tgggatggtc gtgcaggaac attagccgat
      481 caagctaaag gtccaatcca agctgatcct gaaatggcaa ctcctgctaa acttgcagta
      541 gaaaaaattt catctttgcc tgaatatgtg agtgagttta aaaaaatcta tggtaaaagc
      601 ggtgtaaatt ttgacaatat tgctgatgca attgcaaatt ttgaaagaac tttgatcact
      661 ccatctcgtt ttgataaatt tttagaaggc gatgaaaaag ctttaacaaa agaagaacaa
      721 aaaggcttaa agctttttat agataaaggt tgtgtagctt gtcataatgg tgtgaattta
      781 ggtggcaata tgcaagcgtt tgaagttgct ggtaaatata aatttgcaaa tttaggtgat
      841 tttaaaggtg atgcaaatgg catggtaaaa actccaactt taagaaatgt tgctgaaact
      901 gctccatatt ttcataatgg tgcgatttgg aatttaaaag atgctattaa ggaaatgggt
      961 agtgtgcaac ttggcattaa aatttctgat aaagaagcaa aaagtattga aactttctta
     1021 aaatctttaa caggaacaaa accagcaatt gtttatccac aacttcctat ttctactgaa
     1081 aaaactccta aacctgaact ataaggttcc aaacaagctc taattttaga gcttgtttaa
     1141 atttctttat cttagctttg ttataattgt ctttaaattt tgctagaaag gtttgcaatg
     1201 aaactttttg gaactgatgg agttcgtgga aaagcgggtg aatttttaga tagttttttg
     1261 gctatgcgtt tagcaatggc tgcgggtatt tattttaaag ataaaagtat tactaataat
     1321 atcttagtag gaaaagatac aagaagaagc ggctatatga tagaaaatgc tattgtttca
     1381 gggcttactt ctatagggta taatgttata caaattggtc ctatgccaac tcctgcgatt
     1441 gcattcttaa ctgaagatat gcgttgtgat gcagggatta tgatttcagc ttctcacaat
     1501 ccttattatg ataatggtat taaatttttt gatgctcatg gaaataaact cagtgaagat
     1561 atagagaaaa aaatagaaga aatttatttt gatgataagc ttatacaagc ctctaaggta
     1621 gatatggaga aaattggtca agcaaaaaga attgatgatg ttataggaag gtatattgtt
     1681 tctattaaaa attcttttcc aaaagatctt actttaaagt ctttgcgtgt ggttttagat
     1741 gtggctcatg gagcagctta taaggtagca cctactgttt ttaaggaatt aggtgctgaa
     1801 gttatagtaa tgagcgataa acccaatgga cttaatatca atgaaaattg tggagcttta
     1861 catcctgcaa atttagctgc tgaggtaaag cgtttgcgtg cagatgtagg ctttgctttt
     1921 gatggtgatg cagatcgttt ggtggttgta gatgaaaaag gcgaagtggc taatggagat
     1981 agtttattag gagttttagc actttatctt aaagaacaag gtaaattaca atcaagtgtt
     2041 gtagccacta taatgagtaa tggtgcttta aaagaatttt taaataaaca tggcatagaa
     2101 cttgatactt gtaatgtggg cgataaatat gtgcttgaaa aattaaaagc caatggtgga
     2161 aattttggcg gagagcaaag tgggcatatt atttttagtg attatgcaaa aactggagat
     2221 ggtttgatag ctgctttgca atttagtgct ttaatgcttt ctaagaaaaa atctgcaagc
     2281 tctattttgg gtcaagtcaa accttatcct cagcttttaa ccaatcttaa aattgcagaa
     2341 aaaaaagatt tagataaaat taaaggttta aaagaattaa aaaaagattt agaaaataaa
     2401 aatatcaata ccttatttcg ctattctgga acagaaaatt tgataagact tttactagaa
     2461 gccaaagata ttaagctctt agaaaaagaa atgaaaaatg ttgtggagtt ttttaagaaa
     2521 gctttaaatg gctaaaactt ttaaatttat tttttatttt tggggtgcct ttgttttggt
     2581 ttttgtcctt gatcaatggg taaaatcctt aactttagca ggacttagat ggcagagtga
     2641 atacttagat ttaacttatg ctctaaatac aggcgtagct ttttcaatgt tgagtttttt
     2701 agaacataat ttaaaatatt tacatcttgc tttaattgtc gtgcttttta tttatctttt
     2761 ttggcaaaaa acacttttaa aaactcatag catagctttt ggaatgatgc ttggtgctgg
     2821 cgtttcaaat ttattggatc gttttataca cggaggtgta gtggatatgt ttttttggca
     2881 taaatggttt aattttgcta tttttaatgt tgcagatgtc atgataaata taagtgtggc
     2941 tttgatttta atacaagaaa tatttaaaaa aaggaaaaaa gatgacagaa tggattaatg
     3001 attattattt ttggattaaa tgggtgcatt atttggcatt tgtttcttgg atggctggac
     3061 ttttttattt acctcgtctt tttgtgtatc atgctgaaca taaagacaat aaaggttttg
     3121 tcgagattgt aaaaattcaa gaaagaaaac tttattttta tatacaaact cctgcaatga
     3181 ttgtaacttt aatcacagga agtttaatgt tacatgctca taaggaagtt ttaatggtag
     3241 gtgcgggttt tatgcatgtt aaacttacct gtgttacact tttgattatt tttcatatac
     3301 ataattatta ttgtttaaaa gctttagcaa atgatacttc tgctaaaagt gggaaatact
     3361 ttagaattta taatgaattc ccaactataa tgtttattat tatcgcttta atgatggtta
     3421 ttcgcccctt ttagtttgtc tccgctttaa attccatact agcggagtta agcggatcaa
     3481 tattttcttt catgatatcg atataatctt tatttttaag acgcttatca tctctaaata
     3541 ctgcacgcac aagatccatt cctgtgtaaa aatctttcat taaaaccaca aaaagatatt
     3601 gaccaaattc agttgcgatt aaagcatttt gatcttttat gatggcacca cttgttttaa
     3661 gccctaaaag ttctatgaaa agttcttttt cgaggttgca atttagagtt ttgttgaatt
     3721 tatcaatttc tattttccct gaaaaaattt cagttaaaaa gatatatttg ataatttctt
     3781 ttttatcaaa acaagctttg gctatattag cattttgttt ttcttgtata aatttagcat
     3841 aatcatttag attaaatgca ttaattaaaa gctccccatc taaaaagcta aaagccccgc
     3901 tgcccactcc taggtattca tgatgagaac tgacatattc gtcattgagt ttattttttt
     3961 ccaaagaaaa actccaacca ttgttttgag tatagtcttt aaaaaattcg cgtatgattt
     4021 gataataagt aaattcatta tctttaatgc ttactcctaa acttttagcg atattatctt
     4081 tggtaagatt tgatttcatt aaaggatagg ttgtgatttg ttgcggggct aaatttttag
     4141 caatttctaa gtcatttaaa agttgttttt cgctttgtcc tggaagattg aaaataagat
     4201 ctatactaaa aataggtaaa attcctaaag cttttgaaat tttttcttga agttctttag
     4261 atgaaccaaa tttattatat cttgccactt tttttaaagt ttcatcatca aaactttgaa
     4321 tcccacaact taaacgatca attatacctt taaacataga aagcttattt ggatcaatat
     4381 gatttggatc gctttcgcat gaaatttctt ttatgttaaa taacttttta caaagttcta
     4441 aggtttttaa taattcctct tcattaatca gtgttgtacc accacccaca tacatggagc
     4501 taaaatcaaa acctttatct ttcatgattt taatttcttc tctaagattt tgaaaatata
     4561 ctttggctaa attttcatca taatagtatt tatgaaaact acaataagga caaaaagtat
     4621 ggcaaaaagg tacatgggca taaagcatat agcttttgtc ttgttttgga attttttctt
     4681 tgggttgttt taaaagttcg acattgaaac ctttttggag ggatttttcc atcatagtat
     4741 gagagtattt taaagctaaa ttttgaaata aattcataag tggcctatat attaaaatat
     4801 ttaagacata actttatcaa tttttagcta aaataggagt aaatttttta tttcttaaat
     4861 aaaaaat
//
LOCUS       DAZAND010000104         4851 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.105, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000104 DAZAND010000000
VERSION     DAZAND010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4851
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.105"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(152..910)
                     /gene="map"
                     /locus_tag="ACHDOB_001569"
     CDS             complement(152..910)
                     /gene="map"
                     /locus_tag="ACHDOB_001569"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HFN3326480.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPTDKALISCAKDALYHAIDIIHDGMRFKELSAALGEFIHTRGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(920..1663)
                     /gene="murI"
                     /locus_tag="ACHDOB_001570"
     CDS             complement(920..1663)
                     /gene="murI"
                     /locus_tag="ACHDOB_001570"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HFN3326481.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVESLKNTAKIWLNL"
     gene            complement(1665..2126)
                     /locus_tag="ACHDOB_001571"
     CDS             complement(1665..2126)
                     /locus_tag="ACHDOB_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFN3326482.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYTRPIYNTNKETKLKTIAHE
                     WKKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLV
                     FFKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNNSYWKARYIGARRY"
     gene            complement(2135..3304)
                     /gene="nhaA"
                     /locus_tag="ACHDOB_001572"
     CDS             complement(2135..3304)
                     /gene="nhaA"
                     /locus_tag="ACHDOB_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HFN3326483.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIVAFVVAGIAILAMLVLNILGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIITAFFIPMQTKNGEAFLEEIYESLKFWLAFVILPLFAFANAG
                     VNLSNIDIGAIFSGVSVGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFAARS"
     gene            complement(3301..4449)
                     /gene="nhaA"
                     /locus_tag="ACHDOB_001573"
     CDS             complement(3301..4449)
                     /gene="nhaA"
                     /locus_tag="ACHDOB_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HFN3326484.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFAAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEHADKLAILIASFLSAIVGFIYLKIVK"
     gene            complement(4591..4773)
                     /locus_tag="ACHDOB_001574"
     CDS             complement(4591..4773)
                     /locus_tag="ACHDOB_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HFN3326485.1"
                     /translation="MVSDVSMGNANLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQVSSSSGLDIYA"
BASE COUNT         1830 a          916 c          593 g         1512 t
ORIGIN      
        1 acgatgtgac attttattct aacaacactt aaactgctat aaaaatatca tttagtaact
       61 taaattatta aagaatatta ctacaatatt atttaaaaaa ttttaaattt ttaggatttt
      121 aagaaaaaaa tattattttt ataatttaat atcatatcat agaaagaatt tcagcacgcc
      181 cattaatcac agcaacacaa tgttcataat gagccgcatt aagcccatca atacttccag
      241 catcccattt tccattataa tgctttggtg ttccatcttt ttggcatatc ataggctcta
      301 tgcaaaacac cattccattt ttaattttag ggccactttt tgcactcgca cctttttcta
      361 aatagtttaa aatttcaggc tctccatgag gctttcgtcc tataccatgc ccgcaatatc
      421 cacgaagcgg gacaaaacct cttgtatgga taaattcgcc taaagcagct gaaagttcct
      481 taaaacgcat tccatcatga ataatatcta tagcatggta taacgcatct ttagcacaag
      541 agattaaagc tttatcagtg ggtgaaactt ctcctatagc aatagttctt gctgcatccc
      601 cataataccc atcaatcaaa cttcccacat caagacctaa aatatcaccc tctttgataa
      661 ttttatcatc tggaattcca tggatgcaaa cttgatttaa agatgtacaa atggcacctg
      721 gaaaaccata aagtccctta aatgatggct tggcgccaag gcttaaaata taatcttctg
      781 ccattttatc aatttgtttt aagctcattc ctattttaat ttcattctct aaaaaattta
      841 aagtttttgc tacaatttga tttgctattc ttaatttttc tatttcatct ggttttttca
      901 attctatcat tttatttcct tataaattta gccaaatttt agcagtattt tttaaagatt
      961 caacatcgct tgaagcataa aaatgtaatt ttgctttatg atttttcaaa tctatatttt
     1021 ctctttcttt aagaaattca actatagcat ctcctgaatg aattaatttt gttttatcac
     1081 caaaatactt acttaaagaa cgtcctagta aagggaaatg agtgcaagcg agtatcaaag
     1141 catctggagt tgtgatattt ttaaaataat actccatagc actttgcaaa aaatctcctt
     1201 caaaaatacc ttcttcaacc ataggcacaa aaagccctgt agctaaagca tttatatttg
     1261 tatatccttg agataacaaa cgcttttgat attcttctga tttaatggtt gcttttgtcg
     1321 caatgactaa aatttcttta tttttatcat gcaaagcttt tatcgttgct tcaacccctg
     1381 catcaattac gccatatact ggaaaatgtg cttttgctct taaagcatct aaagcataag
     1441 cactagcagt attgcatgca atgataagca tatcaatttg aaattgttca aaaaattcca
     1501 atgcttcaag acagaacttt ataatagtat ctttatcttt caccccataa ggaactcttg
     1561 cggtatctcc ataatagata atttcatcaa aaagtctagc ttcataaaga gattttaaaa
     1621 cactaagccc tcctactccg ctatcaaata cacctatttt cactttaata ccttcttgct
     1681 cctatataac gagccttcca ataagagtta tttagctcga cttcttttac tccaccttta
     1741 gtagataaat gtataaattt tcccttgctc atataaatac caacatgcat accatttggc
     1801 cctctacctg tcttaaaaaa caccaaatct cctgtttgca attttgattt agaaactttt
     1861 cttccagaac ctaattgagt ttttgtagtg cgaggtatgc gtatattaag ctgagctaat
     1921 gcgctctgtg taaatcctga acaatcagca ccttttttac tagttccacc taaaacataa
     1981 ggagtttttt tccattcatg tgctatagtc ttaagttttg tttctttatt tgtattataa
     2041 atcggacgag tatagtttaa attttgataa aaactacatc cgcttataaa gaatataatc
     2101 gtgatgatga aaaaaatatg cctcatcaat ccccttaaga tcgagcagca aagaatttaa
     2161 gataaataaa accccaaatc ccagaacaaa atgaagctat gagaatagct aaattatctg
     2221 cataattaaa aatatcgcta acttcatacg ccaagccatc gataaacaaa ctcattgtaa
     2281 aaccaattcc tgtaagtata caaaccccat aaagttgttt caaatttgaa ccttggggca
     2341 aggctgcaaa tttaaagcgg attgccaaat aagaaaacaa aaatacaccc acttgtttac
     2401 ccacaaaaag ccccaagaaa atacctacac ttacacctga aaaaattgct cctatatcga
     2461 tattggataa atttacccca gcgttagcaa aagcaaataa aggcaagata acgaaagcga
     2521 gccaaaattt tagactttca tagatttctt ctaaaaatgc ttctccattt ttagtttgca
     2581 tcggtataaa aaatgctgtt atgattccag ctaaagttgc atgcacacca ctttttaaaa
     2641 cactaatcca aagaataact gagcaaataa aataaaaaga ctttcttgtt attcctaaaa
     2701 tatttaaaac aagcattgcc aaaatagcaa ttcctgcaac gacaaaagca actattgata
     2761 attttgtcgt ataaaaaata gctataatta aaatagcacc cacatcatca aaaatagcca
     2821 aagaaagtaa gaaaattttt aaacttgatg gaatatgttt gccacacatc attaaaatcg
     2881 ctaaggcaaa cgctgtatct gtggctgtag gtatagccca accttttaaa gtataagcat
     2941 ctcctatatt taccaaagca aacaacatcg caggtataag tataccccct aaagcagcca
     3001 taaaaggtaa aacaatattt ttaggatttt taaaatcccc gtgcaaaaat tcctttttaa
     3061 gctcaagccc tatagcaaag aaaaatatag atataagccc atcatttatc caaagtaaaa
     3121 aaggcttgtt aagctcaaat tcacctacac taaatccgac ttttaaattt agaaattctc
     3181 gataatgttc gctaaaagat ccattttgca caagcaaagc aagcaaagta caaactataa
     3241 gtaaaacacc accaaaagcc tcgtttaaaa ctaaagtttt taatttatgt actatattat
     3301 tcatttaaca atcttaagat aaataaaacc aacaatggca cttaaaaaac tagctattaa
     3361 aatagcaagt ttatccgcat gttcaaaaat atcactattt ttataagcca aaccatcaat
     3421 aaacaaactc atcgtaaaac caatgcctgt taaaatacat ataccataaa attttccata
     3481 tttaatattt tcaggtagtt ttgcaagctt aagtttgata gcaataaaac aaaaagtaaa
     3541 aacacctagt tgctttccta aaaataatcc tagaataatt ccaaggctta caggcgaaaa
     3601 taccgaacca agatgcatat ctctgatatc gatcccagca ttagcaaaag caaataaagg
     3661 caagataaaa taaaccaccc aaggatttaa atccttaaga acttcatgca aataaggttt
     3721 tttatttttt gtatcaagcg gtataaataa agaaataatc acaccagcca aagtcgcatg
     3781 tactccactt ttaagcatag ctatccacaa tacaacacct actaacacat acaaagaaag
     3841 atgggttatg tgataataat ttaacaaaag cagagcaaat atacaaaaca agcaaataat
     3901 aatcgccaaa gctgaaagct gatctgtata aaataaagca ataataacaa tagcgcccaa
     3961 atcatcaaaa atagctaaag aaagtaaaaa aagctttaaa cttgtaggaa ttttatttcc
     4021 taaaagcatc aaaatgccca ctgcaaaagc tatatcggtt gctgtaggta ttgcccaacc
     4081 tttcatagca aaatcatggg aataattaat agcagcaaaa attaaagcag gagtaatcat
     4141 accccctaaa gctccaaata taggtaaaga tacagctctt atatttttaa gctgtccgcg
     4201 taaaatttca tattttaact caagccctat acatagaaaa aatatagcta tcaaaccatc
     4261 atttatccat aaatccaacg actttgaaat ttgaaaatga tcaaatccta ctgtaaaatt
     4321 agcatgaaaa aaatctgtat aaataacact taaagaagaa tttttacata ataaggctaa
     4381 aaatgtaaaa aatataagca aaataccagg gaaagtttca cttaaaacca tcttctttat
     4441 catttgcatc cttgctccta aataaatatt ataaaaattt aatacgataa ataaaatggc
     4501 aaaattataa cgaaaaaata ctaaagaaat aattatttaa aaaaacaagc tcaagatacc
     4561 aacaagttct taagcttgtt cttaagatat ttaagcgtaa atatccaaac cactagagct
     4621 agaaacttgt ggagcggagg cttgagagac accttccata ccttcgatga gttcattcat
     4681 caatgcctcg tttgtgtcca tagatttttt caaaactgaa gtattaacag cagtcattaa
     4741 attagcatta cccatagaaa catctgaaac catatcatcc tccttttaga ttgagtctta
     4801 agactttatt taaatcggat gatattttta aaacttaata ttttttacta a
//
LOCUS       DAZAND010000105         4829 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.106, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000105 DAZAND010000000
VERSION     DAZAND010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4829
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.106"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1051
                     /locus_tag="ACHDOB_001575"
     CDS             <1..1051
                     /locus_tag="ACHDOB_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326486.1"
                     /translation="REKDGSHQFDIIYTQLGNSIINNIENFLTNNTHNVHSSTFHFKI
                     CEADALENLSKKNIIYYRSNSAFNEKCIRLFDSNLLKFPNKYKGFKLIGYHCWTTEED
                     ANICVSQNWLERRKITSNILIYNKNGEVLLKPCLDNIFVDIYSSICIDEDTYIKVNKD
                     SLSYCDFIAFFLAYPKKHINDNLNFEKLQNINIKIPKKYDFNHLIPQIEIYKEIINEY
                     HFYKDKSTLSQENLLNFQNNYGKAKTRIQNQLSYKLGQALIINSKSVLGYLSLPFIIL
                     SIVISHKQEQKAYKFKIKKNPNLALPSLETYPDYNEALKEKECFTYKLGEAFIKASKN
                     WYGGGVYQIYTQRCA"
     gene            1189..2286
                     /gene="prfB"
                     /locus_tag="ACHDOB_001576"
     CDS             1189..2286
                     /gene="prfB"
                     /locus_tag="ACHDOB_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HFN3326487.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPDLDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANAGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(2449..2760)
                     /locus_tag="ACHDOB_001577"
                     /pseudo
     CDS             complement(2449..2760)
                     /locus_tag="ACHDOB_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344838.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2882..4000)
                     /gene="truD"
                     /locus_tag="ACHDOB_001578"
     CDS             complement(2882..4000)
                     /gene="truD"
                     /locus_tag="ACHDOB_001578"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HFN3326488.1"
                     /translation="MNLAEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQG
                     FANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARAISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDKEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(3969..4790)
                     /gene="thiL"
                     /locus_tag="ACHDOB_001579"
     CDS             complement(3969..4790)
                     /gene="thiL"
                     /locus_tag="ACHDOB_001579"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HFN3326489.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLRPNHVFIKPKLRASFFYEVAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIKTIAKKHGVKLNIFGKAVKGKYEFSGREHHF"
BASE COUNT         1766 a          803 c          641 g         1619 t
ORIGIN      
        1 aagagaaaaa gatggctctc atcaatttga tataatttac acacaattag gaaatagtat
       61 tattaataat atagaaaatt ttttaacaaa caatacacat aacgtacaca gttcaacctt
      121 tcattttaaa atttgcgaag cagatgcatt agaaaattta tcaaaaaaaa atatcatata
      181 ttatcgctct aattctgctt ttaatgaaaa atgcataagg ttatttgact ccaatctact
      241 aaaatttcca aataaatata aagggtttaa actgataggt tatcactgtt ggacaaccga
      301 agaagatgca aatatttgtg tttcacaaaa ttggttagaa agacgaaaaa ttacaagcaa
      361 tattcttatt tataataaaa atggtgaggt tttattaaaa ccttgtcttg ataatatatt
      421 tgttgatata tattcttcca tttgcattga tgaagataca tacattaaag ttaataaaga
      481 ttcattatct tattgtgatt tcattgcatt ttttttagcc tatccaaaaa aacatattaa
      541 tgataattta aactttgaaa aattacaaaa tattaacata aaaattccaa aaaaatatga
      601 ttttaatcac ctaattcccc aaatagaaat ttataaagaa atcattaatg aatatcattt
      661 ttataaggat aaatctacct tatcacaaga aaatctgtta aatttccaaa ataactacgg
      721 aaaagctaaa acaagaattc aaaaccaact ttcttataaa ctaggacaag ctttgattat
      781 aaattctaaa agtgtattag gctacttatc tttacctttt ataatattaa gcattgttat
      841 ttcacataaa caagaacaaa aggcttataa atttaaaata aagaaaaatc caaatttggc
      901 tttaccatct ttagaaactt atcctgatta taatgaagct ttaaaagaaa aagaatgttt
      961 tacttataaa ttaggagaag cttttattaa ggctagtaag aattggtatg gggggggggt
     1021 atatcaaatt tatactcaaa gatgcgccta ggttgaagag agaaattaag aagaggtaaa
     1081 ataagcaaat ttctttaaac attcgcaaaa tataagaaat tgtgcaatag attttttaat
     1141 gtaaaatttg ctaaaataat atcttaaaaa tgaagaaaga aaatttttat ggataactac
     1201 gaatttagcg aacttttaaa aactttaaaa aacaaagtcg gcaacatagc ctccatcatc
     1261 aagcctgaaa atatccaaac aaggcttaaa gaaatcgaag agcttgaaaa ttctccttct
     1321 ttttggagtg atgttaaaca agcaggaatc ataggtaaag aaaaaactaa aatcaccaat
     1381 ctacttaaaa actatgaaaa tgcttttaat gctctaaatg acgcaagcga acttttcgat
     1441 ctggccaata gcgaaaacga tacagaaacg cttgaagctt tatttaatga cgcaccaaaa
     1501 cttgaagata ctatcacaag tcttgaaatt tccatgcttt taagcgggga aaatgatggt
     1561 aaaaatgcca ttgtttccat tcacccaggt gcaggtggaa cagaaagtaa tgactgggca
     1621 agcatacttt atagaatgta tttaagattt tgtgaaagag aaggttttaa agtcgaaact
     1681 ctagactttc aagaaggcga agaagcagga cttaaagatg tgagcttttt agttaaagga
     1741 gaaaatgctt atggttattt aaaagctgaa aatggtatcc atcgtttggt aagaacttct
     1801 ccttttgata gtgcaggacg ccgtcataca agcttttcaa gtgttatggt aagccctgac
     1861 cttgatgatg atatagaaat tgaaatcgaa gaaaaagaca taagaataga ttattacaga
     1921 gcaagcggtg caggcggaca acatgttaat aaaacagaat cagctgtgag aatcacacat
     1981 tttccaaccg gcatagtcgt acaatgccaa aatgacagaa gtcagcacaa aaacaaagcc
     2041 accgctttta aaatgctaaa atctcgcctt tatgaacttg aactcatgaa acaacaagat
     2101 agtgctaatg ccggagaaaa aagcgagata ggctgggggc atcaaatccg ctcttatgta
     2161 cttttccctt atcagcaagt caaagacaat cgcagtggag aagctttttc tcaagtggat
     2221 aatatccttg atggagatat caaaaaaatg atagaaggcg ttttaattgc cttaaaagcg
     2281 gagtaacagg cttaaaaata agtaatttct gcaaaatgtc ggtataaaaa gaattagaaa
     2341 gatagcggga ctttcccgct tgttttatta tcttgcataa aacctaaaag catcattcac
     2401 agaacaataa attcttttct taaagtcttt atcgcaataa acactcacaa ctttatagtc
     2461 ttttttatcg tttggattta ataagaaaac atagtttgag tatggagttt tatctatttc
     2521 taaatcacgc ttcatttctt tgattttacc ttctggatct ttaatatcac taattgctct
     2581 gactgaagta taatcataaa gcttataatt tggatatttt ttcataatct cttgattacc
     2641 taaatcaaac atagcttgat cgttgccatt gttctttaac tcgactaaat cgccatcgcc
     2701 acaacccaca atcaaagtca tagctcctaa agccaaagca cttgttaaaa tctttttcat
     2761 tatttttgct cctagtttta aaattaaatt aatataacta tacctaaatt taaaatttaa
     2821 atatcatttt tgcaataaat tctaaagtaa aaatcacgta aaaatttaac tcataattat
     2881 ttcattcaaa caaattttta tgcaaaattt cttctaaaac cacagtagca taagagcctt
     2941 tttgcaagaa aaactctata caaaaatggg ctttttcttt atcataacgc cattttaact
     3001 cttctaaata tccccacata aagcgtcttg aaccttgcat tttagcctta aactccaaag
     3061 tatctttaaa aatttcattt tctaaattta aggccaaacc ttctcctgtt tcataagcct
     3121 tagcaccgat taaaagcccc atagcgctta tagctcttgc cttaaaacgc ccaagctcag
     3181 cacttaaatc ctcacataaa aaacactttc caaaaggata atgccctaaa acctcacctt
     3241 ttaaaagctt aaaaaattgt tcttgttttt taagttcctt agcttcttct ttggagattt
     3301 tataaatttg gatcaattct ttttcgctaa aatcatttgc aaaatgtgat aactccactc
     3361 ttttactcaa atagcgatta aaaagctcac tttgaaaagc tgaaattaaa aactctttca
     3421 tttttacatt tttcatcttt ttaccacgca aaatttcaag cccttcttta taattatccc
     3481 caaattttcc aaaacgctga taaccaaaat aattcgcgaa accttgttta tccaaattta
     3541 tcaaagcttg ttctagtttt aaagcatcgc ttggtaaaac tttttttaag cgtatgaaaa
     3601 aagaatttcc ttttaaatgg cctattctta gcttgttctc atgggtaaaa atttctaaaa
     3661 ttttaagttt aggatgagaa aaatttgata aaaaactctc aaatttttta ggcatagaaa
     3721 ggtattgaaa ggttgatcct tgcttgtctt taagccctgc ataaccaaaa tctcttattt
     3781 taaccccact tgcttcactt aaaattttta aagcttcatt tgtggttaaa tcttttttat
     3841 tgatatgcaa aataagatgc tcacccttac cactaaattc atacaaaggc ctttcacgca
     3901 ctacaaaatc atcgctattt ttactaaaat acgcattaat aggactgtgt tttaaactat
     3961 acaaaggctt aaaaatggtg ttctcttccg ctaaattcat attttccttt cactgctttt
     4021 ccaaagatat ttaatttcac gccgtgtttt ttggctattg tttttatatt ttgacgctct
     4081 ttttcatcaa aagcaaacaa aatttcatat tcttctccgc tataaagcgt ataatcatca
     4141 agttttttaa accaagaaat accgcattta tttaaggcta aaagtcttga taaatccttg
     4201 cttaaaccat ctgaaatatc catagcacaa gaaattaaag gtgcgacttc ataaaaaaaa
     4261 ctagctctta attttggctt tataaataca tggtttggtc ttaaagtgcc cccattttgt
     4321 aaaatttcaa gcccttttaa acttcgtcct aattttcccg tataagcaag taaatgcccc
     4381 ttttttaaac cttttctaaa aacagcttta tcattaatct ttgaaatgat agtaagacta
     4441 atgtctattt tatcattgct tatagtatca ccgcctatga tttttatatt aaatttccta
     4501 gctgttttta aaaaaccttt ttgcaaggct ttgatctcat tttcgcttaa attttttggt
     4561 aaagcaagtc ctaaaagtgc gtattttggt acagcattca ttgaaatagc atctgagata
     4621 ttaacaagca tggcttttgt agcaatttgc tctaagctaa accactctct tttaaaatgc
     4681 acattttcaa aaaacaaatc cttactaaaa caccaatcat caataatagc tccatcatcg
     4741 ccattttttt catttaaaaa agctttgata ataaaatctt ctttgttcat aatgcgtgat
     4801 tttataaaat ttccttttaa attctagtg
//
LOCUS       DAZAND010000106         4777 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.107, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000106 DAZAND010000000
VERSION     DAZAND010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4777
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.107"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..504)
                     /locus_tag="ACHDOB_001580"
     CDS             complement(<1..504)
                     /locus_tag="ACHDOB_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HFN3326490.1"
                     /translation="MQAIILCGGLGTRLKSVIKDIPKPMAPINNKPFLEFIFEYLKRQ
                     GIKEIILAVSYKYEVIQEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEACVL
                     NGDTFFDIDLNKLKLNGGKIYLALKQMNDFDRYGTVNVDKQGFVISFEEKIFKTQGLI
                     NGGIYLLT"
     gene            complement(492..1097)
                     /gene="gmhA2"
                     /locus_tag="ACHDOB_001581"
     CDS             complement(492..1097)
                     /gene="gmhA2"
                     /locus_tag="ACHDOB_001581"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HFN3326491.1"
                     /translation="MENLNSYIKGHFTDSILVKEQILKDENLITLIKNASLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGANGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            complement(1085..2104)
                     /gene="hddA"
                     /locus_tag="ACHDOB_001582"
     CDS             complement(1085..2104)
                     /gene="hddA"
                     /locus_tag="ACHDOB_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HFN3326492.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNVTISLYIHCT
                     LIEREDGKIIFDSPDTNSYCEYESKEHLENDGKLDIFKSIYNRIIKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYDNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAQILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALNKEQGWVQDFSFTKEGV
                     KSWRI"
     gene            complement(2101..3132)
                     /locus_tag="ACHDOB_001583"
     CDS             complement(2101..3132)
                     /locus_tag="ACHDOB_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HFN3326493.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFNIPIETLQ
                     TNIIGTANILENIRILKAKDGYDPIVHICSSSEVYGRAKAEVKLNEDTAFHGASPYSI
                     SKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVI
                     KVGNLSSVRTFQDARDAIRAYYLLSLESEKGKVPCGEAFNIAGEEVFKLPEVIDILLG
                     FSTRKDIKVEQDEERLRPIDADYQMFDNTKIKSFIDWKPEIPARQMFEDLLNHWRDEI
                     KKGRIPLNR"
     gene            complement(3144..4202)
                     /locus_tag="ACHDOB_001584"
     CDS             complement(3144..4202)
                     /locus_tag="ACHDOB_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase family protein"
                     /protein_id="HFN3326494.1"
                     /translation="MQKDSKIYIAGHSGLVGSAILNELKQQGYKNLVFKTHFELDLTN
                     QKAVADFFEREKPEYVILAAAKAGGILANNTYRADFIYQNLMIECNVIHNAYLHKVKK
                     LLFIASTTVYPKNATLPTSEEQMLSGDLEYTNKPYAIAKISGLMLCESYNLQYNTNFI
                     AITPTNLYGNNDKFDLEKSHVLSGILRKMHLAKLLNEKRYEDLLNDLKFDSIEEAKNY
                     LKKFGVDENNVEIWGSGKPTREFLHSQDLANACLFIMNNIDFKDLKGDNTEIINTHLN
                     IGPHKNITIKELAELIKNIVGFKGKLVFNSNRPDGAMQKFTDCSKIHSLGWKHKIELE
                     DGIKMMYKWYLKEQNIRQ"
     gene            complement(4202..4747)
                     /locus_tag="ACHDOB_001585"
     CDS             complement(4202..4747)
                     /locus_tag="ACHDOB_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HFN3326495.1"
                     /translation="MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTSEAIDNLL
                     PNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYGEVHQVVVDCRKDSSTYLKHER
                     FIINQDNQQIILVPAGFGNAHYVSSESAVYYYKCAYLGEYMDAHDQFTYAWNDERIGI
                     DWPTNSPILSERDILAMSKDK"
BASE COUNT         1503 a          921 c          587 g         1766 t
ORIGIN      
        1 agttaaaaga taaattccac cattgattaa accctgtgtt ttaaatattt tttcctcaaa
       61 ggaaatcaca aatccctgct tatcaacatt tactgtacca tatctatcaa aatcattcat
      121 ttgctttaaa gcaaggtaaa ttttacctcc atttaacttt aatttgttta aatctatgtc
      181 aaaaaaagta tcgccattta aaacacaagc ttcatttttt ataaatttta aagcttcttt
      241 tatagctcca cctgttccta aaggctcttt ttctatacta tattttattt ttatacctaa
      301 aaactcatct ttaaaatatt cttgtatcac ctcatactta tatgaaaccg ctaggataat
      361 ctcctttatg ccttgccttt taagatactc aaaaataaat tctaaaaaag gtttattatt
      421 tatcggtgcc ataggctttg gaatgtcttt tataacgctt ttaagccttg ttcctaagcc
      481 gccacaaagt attattgctt gcaagaaaaa cctttaccga aaagctcttc ttcgacaata
      541 gcgcaaataa tatgccctat caaaatatgt gcttcttgaa ttcttggtgt gcaagttgaa
      601 ggtactttta tacaataatc acaaagttca ttcatagccc caccattagc tccgcttaag
      661 cctatactta tgatttcttt ttgcttacaa agttctagag cctttaggat atttttacta
      721 tttccgcttg tagaaattcc tataaaaaca tctcccttaa caccttgagc ttgcacttgt
      781 ctagcaaaca aattttcata accataatca ttgccaatag ctgttaaaat acttgtatct
      841 gtagtaagtg caatacttgc gatccctggt ctatcaaaat aaaatctact tacaaattcc
      901 cctgcgatgt gctgtgcatc tgctgcacta ccaccgtttc ctgcaagcaa ggttttattg
      961 ccatttttgt aagcttttat gacttctaat gaagcatttt taataagagt tatcaaattc
     1021 tcatctttta aaatttgctc ttttactaaa atagaatctg taaaatgtcc ttttatatag
     1081 gaatttaaat tctccatgat ttaaccccct cttttgtaaa tgaaaaatct tgcacccagc
     1141 cttgttcttt gtttaaagct ttaattaaat tgtatttttt agtaggatct acaaagaaaa
     1201 acataaatcc accagctcct gctccactgg ttttaccact gtaagctcca ttatctatag
     1261 caagtttata aattctttca agctcatcgt tgctaacgat ttctgaaatg attttttttg
     1321 actgccaaga cttacctaaa atttgcgcca aagtatcaaa atccgcctta aataaagctt
     1381 ctttcatctt tatagcatct tgctttatgg catgcatggc ctcaagggat ttttcatctc
     1441 caagttttcc ttttttatgc tcttctatat cttttgcttc tcttgtgata tttgtaaaat
     1501 aaagcacagt tctagcttca agctcactag ctatccagtt tttaatacgc aaaggattga
     1561 caatgactct tttattatca taaaattcca taaaattaaa gccaccaaaa gttgcggcgt
     1621 attgatcttg tgctccgcct actatgccta aatcttctct ttctatctca taagcaagtt
     1681 tagcgatttc atattcccct aaaggtaaat taagccattc tgcaaaagct tttataaccc
     1741 ctacaaccaa agtcgagctt ccacccaagc cactaccact tggtacatct gagtatgtat
     1801 gcaaagaaaa actcaaaggt ttttttgtaa aatcttttat aatgcgatta taaatacttt
     1861 taaaaatatc taattttcca tcattttcta aatgctcttt gctttcgtac tcacagtaag
     1921 aatttgtatc aggagaatca aaaatgattt ttccatcttc tctttcgatc aaagtacaat
     1981 gtatgtataa agatatagtc acatttaaaa cataacctgt gtatttatca caatataaat
     2041 ttatatcagt tcccccacct gctagaccga gacgaagagg agtttgtgtg cgtatggttt
     2101 tcatctattt aaaggaatcc ttcctttttt tatctcatct ctccaatgat ttaatagatc
     2161 ctcaaacatt tgtctagctg gaatttctgg cttccagtca ataaaacttt tgatttttgt
     2221 gttgtcaaac atttgatagt ctgcatcaat aggacgtagt ctttcttcat cttgttctac
     2281 tttaatatct tttcttgtag aaaaacctaa aagtatatca ataacctcag ggagtttaaa
     2341 aacttcttct cctgctatat taaaagcttc cccacaagga acttttcctt tttcactttc
     2401 aagagaaagt agataataag cccttatagc atctctggca tcttgaaagg ttcttacact
     2461 cgaaagattt ccaaccttga taacaggctc ttgataaccc gcttcaatca aagcaatttg
     2521 ctttgcaact gtactttcaa aaaaaacatc ggaacgtctc gggccactat gtgttcccat
     2581 tcttgtaaca aaagtgcgaa tgttataagc ttcgccataa aatcttccta aataatcggt
     2641 gccgattttg cttatactat aaggacttgc accgtgaaaa gccgtatctt catttaactt
     2701 aacttctgcc tttgccctac cataaacttc acttgaagag caaatatgca ctataggatc
     2761 ataaccatct tttgccttta aaattctaat attttccaaa atatttgctg ttcctattat
     2821 gttagtctgt aaagtttcaa tcggtatatt aaaagaagtt tttggataag actgagctgc
     2881 taagtgaaaa atcacatcag gcctttgact ctcgaaaagt ttttgaagac tagagtaatc
     2941 atttaaatct gcataaaaaa tactgattct atctttttta tttatcctgt cacttaaatg
     3001 atagatatta tccataggtt cttgccaacg catcatacct ataacatcat agtctgtgtt
     3061 ttctagcaag aaatctgcca tttgagatcc aacttgccct gtaaaacctg taattaatgc
     3121 tgtttttttc ataatttttt ttcctactgt cttatatttt gctcttttaa ataccattta
     3181 tacatcattt taatgccatc ttcaagttca attttatgtt tccagcctaa agaatgaatt
     3241 tttgagcaat ctgtaaattt ctgcattgcc ccatctggac gatttgaatt aaaaactaat
     3301 tttcccttaa atcctactat atttttgatt aattctgcta attctttgat agtgatattc
     3361 ttatgcggac ctatatttaa atgagtatta ataatctcag tattatcacc ttttaaatct
     3421 ttaaaatcta tattattcat gataaataaa caagcatttg ctaaatcttg actatgtaaa
     3481 aattctcttg taggctttcc actaccccaa atttcaacat tattctcatc tacaccaaat
     3541 ttttttaaat aattcttagc ttcttcaatg gaatcaaatt ttaaatcatt taataagtcc
     3601 tcgtatcgct tttcatttaa aagcttggct aaatgcattt ttcttaaaat tccagacaat
     3661 acatgagatt tttcaagatc aaatttatca ttattgccat ataaatttgt aggagtgatt
     3721 gctataaaat ttgtattgta ttgcaaatta taactttcac aaagcatcaa gcctgaaatt
     3781 ttagcgattg cgtaaggttt gttagtatac tcaagatctc cacttaacat ttgctcttca
     3841 ctagttggca atgttgcatt tttaggataa accgtagttg aagctatgaa aagtagcttt
     3901 tttactttat gtaaataagc attatgaata acattgcact ctatcattaa attttgataa
     3961 ataaaatcag cacgataagt attattagct agaattccac ccgctttagc tgctgctaaa
     4021 ataacatact ctggcttttc tctctcaaaa aaatcagcca cagctttttg atttgttaaa
     4081 tcgagctcaa agtgagtttt aaaaacaaga tttttataac cttgttgctt aagttcatta
     4141 agtatagcac taccaacaag accactatga cccgctatat aaattttaga atctttttgc
     4201 atcatttatc cttactcatc gctaaaatat cacgctctga aaggatagga gaatttgttg
     4261 gccaatctat accaattctt tcatcattcc atgcataagt aaattgatca tgtgcatcca
     4321 tatattctcc taaataagca catttatagt aatacactgc actttcacta ctaacataat
     4381 gagcgtttcc aaaacctgct ggaactaaaa tgatttgctg attatcttga tttatgatga
     4441 atctttcatg cttcaaataa gttgatgaat cttttctgca atcaaccaca acttgatgca
     4501 cttctccata gacacaagta gctaacttat aagtttttac atcaccatgg ataccacgga
     4561 taacattatg tttagaatgt atgaatttat catgtataaa ttttaatcca tttggcaaaa
     4621 gattatctat agcttcactt gtaaaagccg tccaaatttc acctcttaaa tctctaaatt
     4681 tgttaggagt tataatatac actcctttta aaatttttga ttcttgtata tcaaattcta
     4741 ttgccattat tttcctttaa atttacaaat tttatat
//
LOCUS       DAZAND010000107         4768 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.108, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000107 DAZAND010000000
VERSION     DAZAND010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4768
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.108"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..225
                     /locus_tag="ACHDOB_001586"
     CDS             <1..225
                     /locus_tag="ACHDOB_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN3326496.1"
                     /translation="KYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHV
                     IFITLSSEDSFFEQGVKFEVISFDKFSLGF"
     gene            complement(222..953)
                     /locus_tag="ACHDOB_001587"
     CDS             complement(222..953)
                     /locus_tag="ACHDOB_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004040 - amidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HFN3326497.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(928..1677)
                     /gene="dapF"
                     /locus_tag="ACHDOB_001588"
     CDS             complement(928..1677)
                     /gene="dapF"
                     /locus_tag="ACHDOB_001588"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HFN3326498.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFTYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(1674..2279)
                     /gene="coaE"
                     /locus_tag="ACHDOB_001589"
     CDS             complement(1674..2279)
                     /gene="coaE"
                     /locus_tag="ACHDOB_001589"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HFN3326499.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLD
                     SQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM"
     gene            2340..3329
                     /gene="purM"
                     /locus_tag="ACHDOB_001590"
     CDS             2340..3329
                     /gene="purM"
                     /locus_tag="ACHDOB_001590"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HFN3326500.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEDKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYI
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            complement(3349..4707)
                     /gene="dcuC"
                     /locus_tag="ACHDOB_001591"
                     /pseudo
     CDS             complement(3349..4707)
                     /gene="dcuC"
                     /locus_tag="ACHDOB_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780992.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
BASE COUNT         1560 a          747 c          757 g         1704 t
ORIGIN      
        1 aaatacttta acttttatag ccaaatatct aaaattgctt atatttcaag tccaacttta
       61 gatattgatt tgattaaatt acgtgctaag aaaattttac caaaggcttt agaacttgga
      121 atttttcatg tgatttttat cactctttca agcgaggata gtttttttga gcaaggggtt
      181 aaatttgaag tcatatcttt tgataaattt tcacttggat tttaggtgtt gtttgagttt
      241 gtatcgtatt tttcaaggtt gtatcgtttg atgatttttg taataagatt gatataatat
      301 cccttgcgtt cagaataaga atctaaagtt ttaatagcct ctagtcctgt tatctctttg
      361 ccttcgcttg caaatttagc tcttgcatcg cgaaactttt cataagcaaa atgacgattt
      421 aaatttaaaa cataagagta aacactatct tgcagactat caaaaatctt aattttatgt
      481 tttttatctg gatgtcttaa atcaggaatt aaacctttct caccccaagt ccattctcca
      541 aaaagattat ttgcttctct tgcgaagcga cttgtacctg tagcactttc aactaaagct
      601 tgggctatac ccatggattt tggaattttt tgaatacgtt ttttatattc tgcaaaatca
      661 taaagatttt caatgcgata tttgtttttt atcgtgataa gtttttcaag atttgtttga
      721 tttgaagtcc taaagcctgt tttgtaagca tctttaaaaa aggcttcgat aaaagctctt
      781 tcttgttcaa tttttttaaa gctttgatca aacatttcat tcatttttat aaaaaaaatt
      841 tgtctttttt gatctatatc aagtttgtaa tattcctctc caaagccatt ttttagatca
      901 tcagcaaaaa gtgggattag aaaaagacta agaaaaatta taattggctt caaaacaata
      961 ctttaccttt ccttcaaaaa acaattcttc atttttatat gtaaacccaa cctcttcacc
     1021 acttttagga gttattttaa ctttattttg tactttttta tttaaaaatg ccagataaaa
     1081 acaagccccc attcctgtgc cacaagctaa ggtttcatct tcaactccgc gttcataggt
     1141 acgaactttt aaatgatttt catctaaaat ttttacaaaa ttaacattgg cattatattt
     1201 ttgtctcatt ttttgacaaa gtattgtatc aaattcatct aaattttgac aaaaatgcac
     1261 tagatgtgga actccagtgt cgcaaagttg ccaagttttt cctaattctt caaaagtatt
     1321 ttgcacgctt tttattttgc ctaaagatac ttcaacttta tcttgattta cctttgcttt
     1381 tattattcct gcaccggtta aaaaactcat gttaggattt attttgttaa tatgatgtgc
     1441 aaaatgtgcc gcagcccttg agccattgcc acacatagca gcccttgagc catcgttatt
     1501 ataaaattcc cattcaaagt cgtatttttc atgaggcaat atcacgataa agccatcccc
     1561 acctatgccc tcataacgat tgcaaagttc tttagctaaa gcacttctat cttcttttct
     1621 atcagcattt gttatgacaa aatcattccc acttgcacaa tatttataaa atttcacatt
     1681 tttcctttag aaatttcttg tattacttta acacattctt gcctaaaatc gacataagaa
     1741 ttagtatttt taatgataaa atctgctttt ttaagttttt cttcaatatc tatttgagaa
     1801 tcaagtctca cttttgcagc ttctaagctg agcttatctc tttgcatgat tcttttaagg
     1861 cttaattctt taggtgtgta aattacaatg actttgccta aattttcata agcaccgctt
     1921 tcaaaaaaaa gaggaatttc tacaaaaaaa gctttatttt ctttatctag aatttgcatt
     1981 tgttctaaaa ttttagctcg aattttagga tgagtgaaat tttctaaggt ttttttagct
     2041 tctttgttgt taaaaacaat ttctccaagg atttttctat cgattttctt ttcttttgtg
     2101 agtaaatttt ttaagttaaa gggagaaaaa atcttttcaa gttctaaagc attttcatct
     2161 aaaattttat gagcaatttt atctgcgcta atgcttttaa agcctaaaga attcgctatt
     2221 tctataaaag tgcttttacc acaagcaatt gaagcggtta caaaaaaagc atttttcatc
     2281 ttatgcctta ttaaaacttt tttcgttaaa ataccttttt agttcttaaa ggaaaataaa
     2341 tgaaaatttc atatgaagat gcaggcgtaa gtatagataa tggaaatgcc tttgtagagg
     2401 ctataaaacc tttggttaaa gaaactttta atgataatgt tgtaggcgga attggttctt
     2461 ttgctggtgc ttttagaatg ccaagcggtt ttaaaaagcc tgtgatttta ggtgcaacag
     2521 atggagttgg taccaagctt cgcttggcaa ttgatgctaa aaaatatgat actataggac
     2581 aagatttagt agcaatgtgc gtgaatgatt tgatttgtaa ttttgctacg cctttgtttt
     2641 ttctagatta ttatgctaca gctaaacttg aagtagaagt agcaaaggct gttgtatcag
     2701 gcattgccaa gggatgtaag atggcaaatt gtgcattaat cggcggagaa actgctgaaa
     2761 tgcctggaat gtatgcaaaa gatgattttg atcttgcggg ttttgcagtg ggtatggctg
     2821 aagaagatga gattgataga agtaaatttg ttaaaaatgg tgatatttta ttggcacttc
     2881 ctagttcagg acttcattca aatggttatt ctttagctag aaaagtactt tttgaaagtt
     2941 taaaattaaa atttgatgac aagatagagg ataaaaattt aattgatatt ttattagagc
     3001 ctacaaggat ttatgtgcgt gattttctta cattaaagcc ttatattagt gctctagctc
     3061 atattacagg gggtggttta gtagaaaatt taccacgcgt tttgcctcgt ggcatgggtg
     3121 caactatacg caaacaccat cttaaaactc ctgaaatttt ttatattata ggacaggctg
     3181 tagaagaaag cgaaatgtat agaagcttta acatgggagt gggtttagta atggttgtag
     3241 atccttctaa tgtaagtaag gttttagaaa attcagatgc ctttattatc ggcgaaattt
     3301 gcattaatga aggtattgtt ttagaatgaa aataaagcgt catacgcttt atttttttat
     3361 tttaagttct atttttgtag tgttttgttc ttttggcaaa ggattggttt gtgctagata
     3421 aaaggctaca agtacattta caagcatagc gataagtaaa agaggagtgg tccgttttat
     3481 aatatccatt ggagctactt ttgcaaatcc agctaaagct atgattccgc ctgctattgg
     3541 tgaagctgcg cgacctaaac aagatgcaat ttctacaggt aaaactagag taataggtgc
     3601 aatgcctaat ttcgtagcta tatcaggagc tagttttcca aaagcattaa aagcagcaat
     3661 tccacttccc ataatcactg tggcaaaata aactaaaaag cttaaaatag ctatactcaa
     3721 aagaattcca aaccatgcaa aatttcctgt tccaagattt gaaaccgcgt tagcaaggat
     3781 attaactcca ccaagtgctt taatgccttc agcaaatact ccagcggcga tgattatgct
     3841 tacgactgag ataaaaattt tagccatagc cttttaaaat caccatcata tcttcgccta
     3901 attttctagc atttctgtgt cttgcaaatt caacaagaaa aactaaagaa attcttacaa
     3961 aatttgcttc acaacatcga gcttgatagt aaaaaaatat gctataaata aaaatacaac
     4021 aggtaaccaa ggaaagagta tgtaaaaaag tagggcattt aggatcaatg atttgcggaa
     4081 tttcaacttc atcatttaaa acaccttttt ctttatctct tttatcaatc caagcaaaat
     4141 aaaaaggaat caagatggca ataactacaa cataggcaat cacactataa atttggtaat
     4201 ttaaaaaaag ccctacgaca ttatcacttt gtcctaccat atctgccata ttgattgaat
     4261 ttccatcttt tggatcataa tcaagtgcaa ttaaagaaag cgcacataca gttgtaatag
     4321 gacggatttt aagtgagatt aaaacaggat aaatacatgc taacaaaagc aatccagcat
     4381 agctagaaat gacgattttt aaagccattc caataacaaa agttccactt aaaattaagt
     4441 atttattttt tgatttttcc tgagggttta tttgctaaaa aagcaagttt tgccgaagca
     4501 ttgatatgtt tcatgtaagc agtaaagcct gccacactca tgataataag ccctgctcca
     4561 gaaagctgac ttttaaaagt cgctgtgata aaagataact atcaagtaaa acatttaaaa
     4621 gcttgtatac tctctgcttg gagcttttgg tataggtgtt cctgtgatat aaaaagcaaa
     4681 aataagcaag ataatatttg aaagaaaaat acaaaaatgg gatcgtattt ttttgagtat
     4741 atcataaaaa ttagcatagg gtctcttg
//
LOCUS       DAZAND010000108         4670 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.109, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000108 DAZAND010000000
VERSION     DAZAND010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4670
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.109"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..617)
                     /locus_tag="ACHDOB_001592"
     CDS             complement(<1..617)
                     /locus_tag="ACHDOB_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFN3326501.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNINFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKSLIQDGLENFNLQKNDDLILEFFDFFNLKKQILEQKPYELSGGEATRVGIIR
                     ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQQKNNISYIFIT"
     gene            complement(610..1320)
                     /locus_tag="ACHDOB_001593"
     CDS             complement(610..1320)
                     /locus_tag="ACHDOB_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFN3326502.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTINFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILEELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            complement(1317..2111)
                     /locus_tag="ACHDOB_001594"
     CDS             complement(1317..2111)
                     /locus_tag="ACHDOB_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3326503.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLAPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIVGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2098..3042)
                     /locus_tag="ACHDOB_001595"
     CDS             complement(2098..3042)
                     /locus_tag="ACHDOB_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN3326504.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLHFSKGSIAYANGVNSQSKEFI
                     QRIEQNLGLDKPLLEQYKIWLFRALKGDLGVSFLSGESVLKLIKERIFNTFILGFGAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPSFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3042..4577)
                     /locus_tag="ACHDOB_001596"
     CDS             complement(3042..4577)
                     /locus_tag="ACHDOB_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HFN3326505.1"
                     /translation="MLRFLIFAMLLFVNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDVSKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKNPKNNSSVYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIIKHIFDPS
                     IASAELKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNFDNEFLKDLKVR
                     QALNYAVDKESIVKNLLHDYAFVANHPLERSWANFKNFKIYKYDPKKAEDLLVGAGFK
                     KNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKTRTLGHHGVGFTWNVYE
                     WSK"
BASE COUNT         1853 a          822 c          499 g         1496 t
ORIGIN      
        1 tgggttataa atatataaga aatattattt ttttgctgat agtcatataa aaaagttaaa
       61 atttctttag aagttttaat atcaagcgct gaagtaattt catctaaaat caacaattta
      121 ggatttaaaa ccaaagcacg gataatacct acacgcgtag cttctcctcc gcttaactca
      181 tagggttttt gttctaaaat ttgttttttt agattaaaaa aatcaaaaaa ttctaaaatc
      241 aagtcatcat tcttttgtaa attaaaattt tccaaaccat cttgtataag acttttgatt
      301 tttttataag ggtttaaagc cattttttga tcttgaaagc agtactgaat ttgctttctt
      361 aaaagtcttt gtttgttttt atcaagcttg tgtaagttaa gattttcata ccatacctca
      421 ccctcacttg gatcttctaa aaaacaaaga attctagcta atgtgctttt acctgcacca
      481 cttttaccta aaattattaa attgtcattt tcatttaaag aaaaattgat attatcaaaa
      541 ataatatgtc tttctttttt taaataccaa tgctttttaa gctcataaaa cttacttaaa
      601 ttacaaactt taagcattat aataccttaa aaactcatct aagctatata aatttgaact
      661 atttttttct agcataagaa tttcatctgc taaagaattt accaaattta aatcatgagt
      721 aatgcaaact aaggctgtgg tattttttaa ttcttctaaa atcgatatga tctttgaagc
      781 gttttcttta tccaaagaag ctgtgatttc atcacaaatt aaaatttggg gttgatttaa
      841 taatgctaaa gctaggctca cccttcttgc catacccaaa cttaattcat tagcataaga
      901 atgccacaaa cgatcaagat tttcaaatcc taatttttga aaataagaaa aagcataatc
      961 ttttctttct ttttgtttta attttgtatg agtttttaaa acaagatgac ataaatttcc
     1021 aatatccaaa taaggataaa gactaagctc tgcatcttgc aaaacaagtg ccaccttaga
     1081 acgaaaattt ctaagctctt ctttgttaaa attaaaaata caagaattat gaaaacttaa
     1141 ttcatcaaaa tttattgtga aattagagtc taaaagtctt accaaagctt ttcctaacaa
     1201 acttttaccc actccgcttt gtcctagtat cattaaagtt ttacctgttt ttatatctaa
     1261 attaatatcc ttaagcaata aattattctt caaactgata tttaaatttc ttaccttcaa
     1321 gatcttatac cccaaatttt ttgtaaaaaa ttacccaacc ataaaagagg taaaaacaac
     1381 aaaagcaagc ttaaaagtgg aaaaagtatc atccaccaag cacctataaa aactgctttt
     1441 gaagactcac tcaaaagagt acctaaagtt ggaatttcaa atcctaaacc cagtccaaaa
     1501 aaactcaaag tagcttctgt ggctatagca tgaacgatat taaatataaa aagtgtaaaa
     1561 atcagtgttt ttaaagcagg tattaaatct ttaaaaaaag ctctaaattt agttcttcca
     1621 agcactatat ttgctttgta aaaatctaaa ttttcaagtc tttttaactc actttctata
     1681 attcttgcta taaaacacca atgaattaaa gcgattaaaa aaatcatcaa gaacacatca
     1741 gaagttatca tactttgaaa aaacatcata agtaaaaaag caggcaaggc taaaaaaaac
     1801 tctaaaatac gcatccaaaa aacataaaaa aaacatcgtg ctaaaaacaa ataacacaaa
     1861 gcaaagataa tagacaataa agatccacca acacctacaa tcaaagaatt tctcaaagca
     1921 aaaagcaaac gagaaaacaa atccctgcct aaaaaatcag tccctaaaat ataagtaaaa
     1981 ttaggagctt gatgcaaatt ttctaaatga gtgcttaaaa tatcaaaagg agccaaaaaa
     2041 ggtgcaaaca aggcgcataa aaacaaaaaa attaaaggcg caagaatgat aagaaattta
     2101 aacaaaatca agccttctta atctaggatt taaaatccta gctacaatat cacttaaaaa
     2161 tgtaaaaaat gctgcaagca aaacactaaa aaatataagc gcaagcacaa caggataatc
     2221 tttaaaaata atacttttaa aaagtaaaga cccaagcccc tcgtaagcaa agacactttc
     2281 taccacataa gttcccatca taaaacttaa agcacttccc ccaaaataag ctacaatagg
     2341 acttaaagaa tatttcaaaa ctaaaaaata aatatctttc tcccttaaag ccctagcgta
     2401 taaattttga ataaaaattt gagaaaaact ttcattgata aaatttctag caatccttaa
     2461 aaataacgcc aaatgtgata aaacgagcac caaaacaggc aaaatcaaat gctctaaacg
     2521 atttaaaaaa tcatcttcaa agcctatatc actacttccc ataacaggta aaattttcca
     2581 aaaaattcca aaaatcaaaa caaacaataa agccaaaaca aaagaaggta aagcaaaaaa
     2641 attaaaagct aaaaaagtga tgattttatc tataaaactt tctttataat aatatcccaa
     2701 aagtgccaaa aaaacgctga gtaaaaataa aagcattaag gcaccaaaac ccaaaataaa
     2761 agtattaaaa attctttctt ttataagctt taaaacactt tctccactta aaaaagaaac
     2821 tcctaaatct ccttttaaag ccctaaaaag ccaaatttta tactgctcta acaaaggctt
     2881 atcaagccct aaattttgtt ctattctttg aataaattct ttactttgtg aattaactcc
     2941 attagcataa gctatactac ctttgctaaa atggagtaaa acaaaacata aaaaagtgct
     3001 aaaaaatgct atgaaaatac taaaaactaa gcgttttagc actatttact ccactcataa
     3061 acattccaag taaaacccac tccgtgatga cctaaagtcc ttgttttgat accttttaaa
     3121 tctttattat aaaccaaagc aaaatcaaga taggccaaga aaataaaagg aggattttca
     3181 tataaagcat ctataaaatc tttataatat ttttttctct cttctaaatt tgaagtattt
     3241 cttgcttttt gcaaggctat atccactttt ttatcatgat aatgtccaaa attccaaccc
     3301 tcatcattta aagcactatc ttgcgaactt tcaaataccc taaaagtgtg aaaatcagga
     3361 tctaaaggac ttccccagcc tattaaaaaa ctatctactt tagaataatc aaaacttcca
     3421 gcaggtttag ccaccacctt gcttacaact cctatttttc taaattcgct ttgcaaaatt
     3481 ccagctaaac ttacccttaa aggatcatta ctcatcgccc aaatttcaaa ttctaaaatt
     3541 ttcccatctt tttcaaaatt tccatcttta tttttcttaa aacctgcacc tacaagcaaa
     3601 tcctcggctt ttttaggatc atatttgtaa attttaaaat tcttaaaatt tgcccaagaa
     3661 cgctctaaag ggtgattagc tacaaaagca taatcatgta aaagattttt tactatactt
     3721 tctttatcaa ctgcgtaatt taaggcttgt cttactttta aatcttttaa aaattcatta
     3781 tcaaaattaa acattaaagc ccgataatcg gctgattttt cacgtaaaat tccaaaattt
     3841 tcatcatttt taaaaatatt tagcaaagaa acatcgatta aagctgcgtc tatcttgcca
     3901 tttttaagct cagcactagc tatagaagga tcaaaaatgt gttttataat aagtcttgga
     3961 gtttttacct tatcaagata aaaatgttca ttggctttaa attcaacata ttcacctttt
     4021 ttccatttta caaatttata aggacctgta cctataggat tttgattaaa agagcttgtg
     4081 tttaaattct cattttcaag caaatgttta ggaagcattc ctatgcttaa agcatctaaa
     4141 aatgcaggat aaggtttaaa aagtgtgatt ttcacatgag aaggatttaa aatttccaca
     4201 cttttaatgt cttcaaaatt gacataaaca gaagaattgt ttttaggatt tttaaaggct
     4261 tctatactaa atttcacatc atcagcacta aatttgactc catcatgcca taaaacatca
     4321 tctcttaaaa aaatatcata aacaagcccg tctttactaa catcccaaga cttagccaaa
     4381 tcaggtttta aactcatatt ttcatcaaaa cgcgtaagcc ctgagaatac aagattaatt
     4441 actgcatcgt gatcctcact ataagcagga tttatccttg cgatttcatt ttcaactgct
     4501 ataataagtg tatcttttgg aatttttgct tctaaattca caaacaacaa cattgcaaaa
     4561 attaaaaatc tcaacataaa aaaacctttt tattttaata acgcacaaaa ttataaaaca
     4621 aaaaaactca actcgcaagc ctatacgggg gataaaatta tattttagtt
//
LOCUS       DAZAND010000109         4657 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.110, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000109 DAZAND010000000
VERSION     DAZAND010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.110"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            1..218
                     /locus_tag="ACHDOB_001597"
                     /pseudo
     CDS             1..218
                     /locus_tag="ACHDOB_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854639.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
     gene            complement(394..1197)
                     /locus_tag="ACHDOB_001598"
     CDS             complement(394..1197)
                     /locus_tag="ACHDOB_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HFN3326506.1"
                     /translation="MEIGKKIRIAREEQGYSQEQLANELGITARTLQNYEYGRSDVGV
                     ILVGRIAKILKINSDYFFKDDSSLVVRKSTDKNVRKSFVSDEKMFVSETNLKNVSKLP
                     LNMSPSNVSKSTNFVSYSSPNTNLESQTLNDDMINIPFFENVRASAGSGAYNDEESTQ
                     ALGLSKSFLRECFGLYSFINLSVILGQGDSMAPTLPENCYLLIQQGEVAEGEICVTRI
                     EDELYVKRLQKRPKLKLLSDNKAYEPINLEGENFEILGRVVGYFKKTTL"
     gene            1296..1580
                     /locus_tag="ACHDOB_001599"
     CDS             1296..1580
                     /locus_tag="ACHDOB_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326507.1"
                     /translation="MNFKQASNLLNGVKHLFESENFNGKDELIKLSLEKLEGFLANQK
                     SKEIAENVSKCFLKHDTGKKTYKSALKSHTFKGYKGRQIKERVGLYSKGF"
     gene            1581..1772
                     /locus_tag="ACHDOB_001600"
     CDS             1581..1772
                     /locus_tag="ACHDOB_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326508.1"
                     /translation="MKNKLVKTMSAKGVKLMTWAKAKGLNHKDITILYDLSHGRIKGI
                     RGRAKELRIMLEKDGFKVA"
     gene            1773..3887
                     /locus_tag="ACHDOB_001601"
     CDS             1773..3887
                     /locus_tag="ACHDOB_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HFN3326509.1"
                     /translation="MWINANIFCDNNSIGLRNLQKKSKKAIESNEKILHIDTKIFSYR
                     YTQGKGHGGKTLQIWSKPLSKEEAKLVEQGFNIEDISNTTITPKTTQEFLSKALNDDV
                     LLKNSKALQVQNTNKTKLSENQIQINKDSLSLFAKASSKKQNLALQKAAVVKEWLHAK
                     GKISTNDFINYINAKKIYEFKLTQNKLFAWQKEYLANGLDALIDKRENKKDDAISALG
                     IKELFINTLLAQKGRLNASNIHRVLNYELAKNGKLDLKDFLGKKDEFISYECVLRSMK
                     KYLKENKLIKNIILHGEDGAISRHLPALGVSNWKVSTINEIVEIDASPLDAICKVDFI
                     NETYGLKGDECSWHKRYTIISLIDTYSGVASFYLGFSEDSLSIARAIAKYISTYGVPK
                     CIHSDNGKAFLSKNVKALLERLNIDYKAMPAYSGWSKPYVENKFKDLQNSLTANLVGY
                     IGSNVKERQAIEFFYSKKERRLKKGYKTNQRRLKTLEYMRECIDDYSAYFMNNKWLDR
                     LGATPKESFEAKIEDAITIDELSLSMYLGGELKLRKVLNKGLSLNGTLFYNPKLYTHE
                     EVFVCENLNNQNEIFCFDKQKELICVANNLDLELGVSIEEAKVARKLVNRAIKANKDK
                     IDEQRMILEKNMEKYLALGKEKLEKVKSPKTKASNNAKKELEFSKALVSNGDFEHLST
                     KVIKDTKCKIPKWENAAKKAGY"
     gene            3976..>4657
                     /locus_tag="ACHDOB_001602"
     CDS             3976..>4657
                     /locus_tag="ACHDOB_001602"
                     /inference="COORDINATES: protein motif:HMM:NF021375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN3326510.1"
                     /translation="MQELSKELECFLEQSGMKPSALARAIGASASLISQIKSASYKGD
                     VALWSKKIRDFIANHKDKQNEKPKKEQLFRSRDFSMATFVMSEAVNEKEIALIFGEAG
                     TGKTTIINEFIKTRPQSILIEATCHTSVGVMLDELLNALKIEANSNNASKLKAIARFL
                     KTNEKILIVDEAEYLPLKALEDLRRIADFARVPLILVGTEILYKNLMGKNKELKQLYS
                     RICGKWMMR"
BASE COUNT         1810 a          638 c          805 g         1404 t
ORIGIN      
        1 ggtaaggtag aatatttgat tgataaaccc gtttataagg atgagattaa aaatttactt
       61 gctgaatttt ttaattatat gaaagatcat ttttatgaag aagagcgata catggaactg
      121 attaaatatc cagatattga aacacataaa aaattcataa acatattatc caatccatga
      181 tagaactgat taaaaatatt aaatcctata aagatatgta aaaaagtaaa gtgagagaaa
      241 ttttaatcaa agtattattt tatagtattt tgatgagatt tttttagaaa tcaaagtgag
      301 cttttatctt tacatttttt tacattgtgc tttacatatt tttacattct ttttataaat
      361 actttacaaa gtcttttaaa cacctttaaa aaattaaaga gtagtctttt taaaatatcc
      421 tacaacgcgt ccgagtattt caaagttttc gccttctaaa ttaatgggtt catacgcttt
      481 gttatcacta aggagtttta gcttggggcg tttttgaagg cgttttacat aaagctcatc
      541 ttcaatgcgt gttacacaaa tttcgccttc tgccacttct ccttgctgga ttaaaagata
      601 gcaattttca ggaagtgttg gtgccataga atcgccttgt cctaaaatca cagagagatt
      661 tataaaagag tataagccaa agcattcacg caaaaaactt ttagaaagtc ccaaagcttg
      721 agtgctttct tcatcgttat aagcgccact tccagcactt gctcttacat tttcaaaaaa
      781 aggaatgttt atcatatcat cgtttaaggt ttgagattcc aaatttgtat taggagacga
      841 gtaggagaca aaatttgtcg acttggagac attactagga gacatattga gaggcaactt
      901 ggagacattt ttaaggtttg tttcactaac gaacattttt tcatcactta cgaacgactt
      961 acgaacattt ttatctgttg acttacgaac gactaacgaa ctatcatctt taaaaaaata
     1021 gtcactattt attttaagaa tcttagctat tctaccaact aaaataacac caacatcact
     1081 tctaccatat tcataatttt gtaaagttct agctgtaata cccaattcgt tagctaattg
     1141 ctcttgagaa tatccttgtt cttctcttgc tatgcgaatt ttttttccta tttccataaa
     1201 ttatccttga caatacgaaa ttattttcgt ataattacat aacttttttg gtaatggtaa
     1261 cacaaaaaaa caaaaataaa attaaaaggc gtaaaatgaa ttttaagcaa gcaagcaatc
     1321 ttttaaatgg tgtaaaacat ttatttgaga gtgaaaattt taatggtaaa gatgagctta
     1381 ttaagctttc tcttgagaag ctagagggat ttttggcaaa tcaaaaaagt aaagaaattg
     1441 ctgaaaatgt tagtaaatgt ttcctgaaac acgatactgg gaaaaaaact tataagagtg
     1501 ctttaaaatc tcatactttt aaaggatata aaggtcgtca aattaaagaa agagttggat
     1561 tatattcaaa aggattttag atgaaaaata aacttgtaaa aactatgagt gctaaaggtg
     1621 taaagcttat gacttgggct aaggctaagg gtctaaatca taaagatata actatacttt
     1681 atgatttgtc tcatggtagg attaagggta taagaggtag agctaaagag cttaggatta
     1741 tgctagaaaa agatgggttt aaggtagctt aaatgtggat aaatgctaat attttttgtg
     1801 ataataattc tatcggttta agaaatttgc aaaaaaaatc aaaaaaagct attgaaagta
     1861 atgaaaaaat tttgcacatt gatacgaaaa tattttcgta tagatacacc caaggcaaag
     1921 gacacggtgg taaaaccctt caaatctggt ctaaaccttt aagcaaggaa gaagcaaagc
     1981 tagtagagca aggttttaac atagaagata taagcaatac tactataact cctaaaacaa
     2041 cacaagaatt tttaagcaaa gcattaaatg atgatgtttt gcttaaaaat tctaaagcct
     2101 tgcaagtgca aaacactaac aaaaccaaac ttagcgaaaa tcaaatacaa ataaacaaag
     2161 atagcttaag cctctttgca aaagccagtt ctaaaaagca aaatttagcc ttacaaaaag
     2221 ctgctgtggt taaagaatgg ctacatgcta aaggcaagat aagcacaaat gattttataa
     2281 attacattaa cgctaaaaaa atctatgagt ttaaactcac acaaaacaaa ctctttgctt
     2341 ggcaaaaaga atacttagca aacggacttg atgctttaat agataaaaga gaaaataaaa
     2401 aagatgatgc cattagtgct cttggtataa aagagctttt tataaatacc ttacttgctc
     2461 aaaaaggaag gcttaatgct tctaatatcc acagagtgct aaattatgaa ttagcaaaaa
     2521 atggcaagtt agatttaaaa gattttctag gcaaaaaaga tgaatttata agctatgagt
     2581 gtgttttaag aagtatgaaa aaatacttaa aagaaaacaa acttataaaa aatatcatct
     2641 tgcatggtga agatggagct ataagcagac atctaccagc acttggtgtg agtaattgga
     2701 aagtttctac tatcaatgaa atcgtagaaa ttgatgcaag tccacttgat gctatttgta
     2761 aagtagattt tatcaatgaa acttatgggc taaaaggcga tgagtgctct tggcataaac
     2821 gctacactat aatatcatta atcgatactt atagtggtgt ggctagcttt tatctaggct
     2881 ttagtgaaga tagtttaagc atagcaagag ccattgcaaa atacatcagc acttatggcg
     2941 ttccaaaatg catacactca gataatggca aggcattttt aagtaaaaat gtcaaagctc
     3001 ttttagaaag attaaacatt gattataaag cgatgccagc ttacagtggc tggagtaagc
     3061 cttatgtaga aaataaattc aaagatttac aaaactcact cactgcaaac ttagttggat
     3121 acataggatc taatgttaaa gaaagacagg ccattgagtt tttttattct aaaaaagaaa
     3181 gaagacttaa aaaaggctat aaaactaatc aaagaagact taaaacactt gagtatatga
     3241 gagagtgtat tgatgattat agtgcgtatt ttatgaataa taaatggctt gatcgcttag
     3301 gtgctacccc aaaagaaagc tttgaagcaa agattgaaga tgctatcact atagatgagc
     3361 ttagccttag tatgtattta ggcggtgagt taaagcttag aaaggttcta aataaaggac
     3421 ttagtcttaa tggaactctt ttttataatc caaaattata cacccatgaa gaagtgtttg
     3481 tgtgtgaaaa tcttaataac caaaatgaaa tcttttgctt tgataaacaa aaagaactta
     3541 tttgtgtagc aaacaactta gatttagaac ttggggtaag cattgaagaa gctaaagttg
     3601 ctagaaaact tgtaaataga gccataaaag caaataaaga caaaatcgat gagcaaagaa
     3661 tgattttaga aaagaatatg gaaaagtatt tagctcttgg caaggaaaaa ctagaaaaag
     3721 tcaaaagccc aaaaacaaaa gctagtaaca acgctaaaaa agaacttgaa ttttcaaaag
     3781 cccttgttag caatggtgat tttgaacatt tgagtacaaa agttataaaa gataccaaat
     3841 gcaaaattcc aaaatgggaa aatgctgcca aaaaggcagg gtattaaaag tctttaaaag
     3901 cttttaaagt ctatttaaac acgctttgaa agtttttaaa agcttttaaa aaagcttaaa
     3961 aacaaaagga tttatatgca agaactaagc aaagaattag aatgcttttt agagcaaagc
     4021 ggtatgaagc caagtgcatt ggcaagagcg attggtgcga gtgcttcttt aatctcacag
     4081 attaaaagtg caagctataa aggtgatgtg gctttatgga gtaaaaagat aagagatttt
     4141 atcgctaatc acaaagataa gcaaaatgaa aaacctaaaa aagaacaact ttttagaagc
     4201 cgtgattttt ctatggctac ttttgtaatg agcgaagctg taaatgaaaa agaaatcgca
     4261 cttatttttg gagaagcagg aacaggaaaa accactatta taaacgagtt tattaaaacc
     4321 agaccacaaa gtattttaat agaggcaact tgtcatacaa gtgtgggtgt aatgcttgat
     4381 gagcttttaa atgctcttaa aatcgaagca aatagcaaca atgcttcaaa actaaaagca
     4441 attgcaagat ttttaaagac caatgaaaag attttaatcg tagatgaagc cgaatatcta
     4501 ccactaaagg ctttggagga tttaagacgc attgcggatt ttgctagagt gcctcttatt
     4561 ttagtaggaa ctgagatttt atacaaaaac ctaatgggta aaaacaaaga gcttaaacaa
     4621 ctttactcaa ggatttgtgg taaatggatg atgagag
//
LOCUS       DAZAND010000110         4551 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.111, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000110 DAZAND010000000
VERSION     DAZAND010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4551
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.111"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..518)
                     /locus_tag="ACHDOB_001603"
     CDS             complement(<1..518)
                     /locus_tag="ACHDOB_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012662069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HFN3326511.1"
                     /translation="MLLQNGAILIADAHENEQRKGFWEFLQALKKGKISTPQLILMGD
                     IFDLLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFFKRVKIFNLQEQ
                     PIKLNLHTSKGNNLVLNNAFIKLAHGDIFLPPLLQFTLKTLRNHYLLIFLNFLNIITC
                     NFISNKILQNQN"
     gene            complement(528..1013)
                     /gene="greA"
                     /locus_tag="ACHDOB_001604"
     CDS             complement(528..1013)
                     /gene="greA"
                     /locus_tag="ACHDOB_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HFN3326512.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRHAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGDLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            complement(1025..2119)
                     /gene="lpxB"
                     /locus_tag="ACHDOB_001605"
     CDS             complement(1025..2119)
                     /gene="lpxB"
                     /locus_tag="ACHDOB_001605"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HFN3326513.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGKFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKQAIKELINLSFTQKIDGILCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFSKSTYV
                     GHPLLDEIKEFKNQEDINHILSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGE
                     KILCIPPFNLEKLEIYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     TYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILSEI"
     gene            complement(2216..2968)
                     /gene="peb3"
                     /locus_tag="ACHDOB_001606"
     CDS             complement(2216..2968)
                     /gene="peb3"
                     /locus_tag="ACHDOB_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HFN3326514.1"
                     /translation="MKKIITLFGACALAFSMANADINLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFTQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            complement(3110..4480)
                     /locus_tag="ACHDOB_001607"
     CDS             complement(3110..4480)
                     /locus_tag="ACHDOB_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3326515.1"
                     /translation="MFDFFKPKAKAIKFPKEEILPRYYKMRTWSLSGVFIGYMGYYLV
                     RNNITLSTPFIQNQLDLSKSDIGTITGSMLIAYGISKGAMSVISDKADPKKYMALGLI
                     LCALVNVLLGFSNSFYAYVGFVIALGVFQGMGVGPSFITLANWYPKKERGIYTAVWNI
                     SHNIGGGIVAPIVSLSGFALAALLGVSMADFNETYWHMNHFYVPAACAVIISLYVLYA
                     VKGSPKNEGLIDITEINEMRGIKTEEIKAVETPNLSSFEIFYRYVLKNKNAWYVAWMD
                     TFVYMVRFGLISWLPIYLLETKGFNKEQMGIAFWLFEWAAIPSTLLAGYISDKIFKGY
                     RMPPAIGAMVIIFFMIIGYFTSNNLYMVIFFAAMAGCLVYIPQFLASVQTMEVVPAFA
                     VGSCVGLRGFMSYVVGASLGTKAIGWAVDYYGSWNAGLIMLLSACILCILCSTLCHFS
                     AKKKYQ"
BASE COUNT         1554 a          813 c          618 g         1566 t
ORIGIN      
        1 ttgttttgat tttgaagaat tttatttgaa ataaaattac aagtaataat atttaaaaaa
       61 tttaaaaata taagcaaata atgatttctt aatgttttaa gagtaaattg taaaagaggt
      121 ggtaaaaaaa tatctccgtg agctaatttt ataaaagcat tatttaaaac aagattatta
      181 cctttacttg tatgcaaatt aagctttatg ggctgctctt gtaagttaaa aatttttacc
      241 cttttaaaaa aacaagaaag attaaaatca tgattgcctt ctaagtagat aatttcaatt
      301 tttaaggcca attcttctaa aagttctatg taaggtttag caaattcatg tgtagcagag
      361 atttcgccta taagcaaatc gaaaatatca cccataagta tgagttgagg ggtggaaatt
      421 ttacctttct ttaaggcttg taaaaattcc caaaatccct ttctttgttc attttcatga
      481 gcatccgcga ttaaaatcgc tccattttgt agtaaaattt tttatcctta aaatttcaaa
      541 ggctcataat ttatagaaag gatttcaaat tcactctcac cttttggcaa acgcacttta
      601 aaatcatctc cttctttttt cccaagcata gcttttgcta ttggagatgc gatggaaata
      661 taacccttat ctaaatctcc ttcgcaaatt cctactaaag tatatttact ttctttttct
      721 gtatccaaat ccatgatcac aacacttgaa ccaaatttca cactatcatg ttcatagctt
      781 gaaggatcga tcacttgagc tcttgctagc aagtcactaa gctctgcaat acgactttct
      841 atcaaagctt gtttttctct tgcagcatgg tattccgcat tttctttcaa atccccatga
      901 ctccttgctg tatcgatttc tattacaacg gcatggcgtt gattgtcttt taaatctttt
      961 aattctgcgg ctaatttatc atagccaaat tgactcattg gttctttttg catgatttat
     1021 ccttttatat ttcgcttagg atttttgcta aatttttagc acttccaaat tgtaaatatt
     1081 cttttaaaaa atcaacttta gcaaaaaatg ccttataatc atatttatta taagcttcat
     1141 ataaatttaa aacattgact ttatcttgta aaaattcagg atttaaagct tcttttccag
     1201 cgaaatcaca aaaaatattt gcaagtccta tgtgttttaa ttttacaaaa agttttgcga
     1261 taaaaatatc gatagccttt gctttgtaag taagaacaaa aggagttccc actaaagctg
     1321 cttctaaagt agctgttcca ctacaaataa aggcaaaatc ggctttttta agcacttttg
     1381 gagtgttgct ttctatctta aattcgctaa tatcaccata aatttctaat ttttcaagat
     1441 taaacggggg gatacaaaga attttttcac ccttaaattt ttgagaaagt tctttaaaaa
     1501 taggcattaa acgcctaatt tcactacgcc ttgaacctgg taaaaaggct atagtttttt
     1561 catcatcttt ttttgaaagt atatgattaa tatcttcttg atttttaaat tcttttatct
     1621 catctaaaag cggatggcct acataagtac ttttgctaaa aaattgatta tcaaagggca
     1681 aaatagaagc taaaatatca aaatgacttt ctatgatagg tatgcgacct tttttccatg
     1741 cccaaacttg aggtaaaata taataaatgc gtggaatttt actgcctgct ttttttaaag
     1801 ccttggcaaa aggtatgtta aaagcgggtg aatctataca taaaatccca tctatttttt
     1861 gagtaaaact taaatttata agctctttta tagcttgttt tgctttaaaa atcaaaggta
     1921 aaacttctat aaaacccata gcactaaact catgtgagct ataaagtggc ttagaattta
     1981 aatcaaattc tttgcataaa ctctcatcat aaatcccatg aagttcaaat ttgccaaagt
     2041 cttttttata agcttttaaa acttctttta aatgcaaatt tgctgaaggc tctaaggcgc
     2101 aaactaaaaa ggttttcaaa aaatttcctt atcaatattt taaacatttt atcttatttt
     2161 ggcttaatta aaagaagtta tggaagaata cacgctaaaa agcgtgtatg aagatttatt
     2221 ctctccagcc gtatttttta aaaatttctt tagcttcctt agaacttaaa taagcaataa
     2281 aatcttgtgt ttctttgctc gcaccttctt tagctactac attaaaagtt ctataaacaa
     2341 ccaaatcttt ttctatagct acggcagttc ctatgtcagg attgcttttt gaccagtcaa
     2401 tccaagtgat ccaagcatcg gcttgatctt gtgtgaaaag ctttcttgca cttccactat
     2461 ttggaacaaa agctacgata ttgtttctaa aattttgtat ggtttttata tcttgagttc
     2521 tacctatcat atcttcccaa actcccgttc cagaagtatt gctctttcca gcaccttcag
     2581 gtacaacgat tcttactttt ttattagcca aatcttttaa acctttgatt tttaaaggat
     2641 tgcctttttg agtaagtatg atggcttctc taaaatacaa aggcttgatt ttactcacat
     2701 taaaatcttt tccaaaatca ctcgctatag ctaaagccga ttgatctgaa gcgccaaata
     2761 aaatatctgc atctttttta gccttttcaa accaagtcgc ttgagggcca aaatttacat
     2821 ttactttaac gcctgttttt tcgctatatt tgtttgctat atcttttaag gccgtgtgtg
     2881 ggccacctgg tccataaagg tttatatctg catttgccat actaaaagct aaggcacatg
     2941 caccaaataa agtaataatt tttttcatag tatttccttt tatgataaat ttttattgat
     3001 tgaaggtgag attttagaaa ttatatgtta ataaatagtt ataatgtaac aaaaatatta
     3061 ttaaaatcta acttttgctt ggtatttttg caagcaaaag ttaaaattgt tattgatact
     3121 tctttttagc gctaaaatga cataaagtag aacaaagtat acaaagaata caagcactaa
     3181 ggagcatgat aagaccagca ttccaactac catagtaatc cacagcccag cctatagctt
     3241 ttgttccaag tgaagcaccg actacataac tcataaagcc acgaagtcct acgcaagatc
     3301 ctactgcaaa agcaggaacg acttccatag tttgcacact tgctaaaaat tgtggtatat
     3361 agactaaaca ccccgccata gctgcaaaga aaataaccat ataaagatta tttgaagtaa
     3421 aatatccaat aatcataaag aaaataatca ccatagcacc tatagcagga ggcattctat
     3481 agcctttaaa aattttatct gaaatatatc ctgcaagtaa agtagaaggt atggcagccc
     3541 attcaaaaag ccaaaaggca atacccattt gttctttatt aaagcctttt gtttctagca
     3601 agtaaatagg aagccaagaa ataagcccaa aacgcaccat ataaacaaaa gtatccatcc
     3661 aagccacata ccaagcattt ttgtttttaa gcacataacg ataaaaaatt tcaaaactgc
     3721 ttaaatttgg agtttctaca gctttgattt cttctgtttt aatccctcgc atttcattga
     3781 tttcagtaat atcaatcaaa ccttcatttt taggacttcc tttaactgca taaagcacat
     3841 aaagactaat gataactgca caagcagcag gaacataaaa atgattcatg tgccaatatg
     3901 tttcattaaa atccgccata ctcacaccca ataatgctgc caaagcaaaa cctgaaagcg
     3961 aaactatagg agcaactatc ccgcctccta tattatgtga gatattccaa acggccgtgt
     4021 aaattccccg ctctttttta ggataccagt ttgcaagagt gataaaagaa ggacctaccc
     4081 ccataccttg aaaaacccca agcgcgataa caaaacctac ataagcgtaa aaagaatttg
     4141 aaaaaccaag taaaacattt acaagagcac ataaaataag acctaaagcc atgtattttt
     4201 taggatcagc tttgtcgctt ataacgctca ttgcaccctt gctaatcccg taagctataa
     4261 gcattgagcc tgtgattgtt ccgatgtctg atttactgag atcaagttga ttttgtataa
     4321 atggagttga aagagtgata ttatttcgca caagataata tcccatatat cctataaaaa
     4381 ccccacttaa actccaagtt ctcattttgt aatatctagg taaaatttcc tctttaggaa
     4441 atttaatagc ttttgcctta ggtttgaaaa aatcaaacat atttaaaccc tctttactaa
     4501 ctttatattt ttatagttta aataatatta atcgatataa aataaaaaaa t
//
LOCUS       DAZAND010000111         4529 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.112, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000111 DAZAND010000000
VERSION     DAZAND010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4529
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.112"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            45..3557
                     /locus_tag="ACHDOB_001608"
     CDS             45..3557
                     /locus_tag="ACHDOB_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HFN3326516.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVIKISAIFNVIFTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIMAILAGMALF
                     SLSFESLYSSAYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGFSFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGLIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFAKFEIN
                     VVYLFYFITLVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKESNLVCLFPEGTLSRHGQLNEFKAGFELACEYLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLILNFFIKRKSKELNINPQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KIFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPLKNNLAIAAILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTILPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTAFEMKFKKSIFEGYGATETTPVASVNLPNRFDA
                     DYWLIHRANKEGSVGMPLPGTAVHIVDPNNYENLKTNEDGLILIGGHQVMVGYLNDKE
                     KTDEVIKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIALLIECNNEIFERVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAL"
     gene            complement(3565..4476)
                     /locus_tag="ACHDOB_001609"
     CDS             complement(3565..4476)
                     /locus_tag="ACHDOB_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HFN3326517.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFISMPILIWALL"
BASE COUNT         1637 a          613 c          733 g         1546 t
ORIGIN      
        1 taaattcttt tgcaaaataa gtgctaattg acgaggttta aataatgcaa aaaaaatctt
       61 ttttgaaaat ttacggatta attccttttt tacttatagc attcatcaat gcttttgtgg
      121 atttgggaca taaaattatt attcaaaata ctatttataa ggcctatgaa ggaagtgagc
      181 agttattttt aaatgctata gttaatgctt tgattttact tccttttatt cttatgcttt
      241 ctccttcggg ttttttagcg gataaatatc caaaaaatat tgtaataaaa atttcagcaa
      301 ttttcaatgt tatattcact ttaataattt gcatttgtta ctatagcggt gctttttgga
      361 tggcttttat ttttactttt ataatgggag cacaagcagc gatttattca ccaagcaaat
      421 acggttttat taaagaactc gtaggaaaag actttcttgc tatgggtaat ggtgtaatta
      481 atgcagtaag cattatggca atcttagcag gaatggcttt gttttcttta agttttgaaa
      541 gtctttatag ttctgcatat aatcaaacag atgaaatttt aaaagaagta gcgcctttag
      601 gaattgtgct aattttattt tcttgtatcg aagtattttt tgcgtggcgt ttacctaagc
      661 tcaaacaaac aaataaagat ttagttttta acaaaaaaga ctatattcgt ggaaaacttc
      721 taataaataa tcttaagctt gtttttaaaa ataaaactat ttggctttgt ataatcggat
      781 tttcattttt ttgggctata tctcaacttt atcttgtcag ctttcctgtc tttgctaaaa
      841 atgaactttt tatagaaaat actttttatg tgcaaatttc actcgctttt tctggtatag
      901 gagtgatttt aggctcttta gtagctggta aattttcaaa aaattatata gaacttggac
      961 ttattccact tggtgcattg ggtatgtttt taatggcttt tttaatgcct tattttataa
     1021 gtttattaag ttatagtttt ttatttttct tttttggatt ttgcggagct ctttttatca
     1081 ttcctttaaa tactttaatc caatttcatg ccaaagaaaa tgaattgggg caaattcttg
     1141 caggaaacaa tttttttcaa aatattgcca tgttaggatt tttactctta gcaactttat
     1201 ttgcaaaatt tgaaatcaat gtggtttatt tgttttattt tattacttta gtaaccttta
     1261 taggaagttt ttatatactt ttaaaacttc ccttttcttt agtgcgtata cttttaagca
     1321 tagctttttt gcaacgatac cgcttacttg tagaaggttt tgaaaatata ccagaaaaag
     1381 gcggagcttt acttttaggt aatcatattt cttttattga ttgggctgtt gtgcaaatgg
     1441 caattccaag aaaaatttat tttgttatgg aaagaagtat ttattctaaa tggtatatta
     1501 aaatttttct tgataaattt ggtattattc ctgtatcaag tacaggaagt aagacgagtt
     1561 tagaactgat agcaaagcat atcaaagaaa gtaatttagt ttgcttattt cctgaaggta
     1621 cgctttcaag acatggacaa ttaaatgaat ttaaagcagg atttgaatta gcttgtgaat
     1681 atttaagcga agatgatgga aaaattattc ctttttatat aagaggactt tggggtagtg
     1741 ctttttcaag aagcgatgaa gaattttcag caagaaaccg cactttaaat aaaagaaaaa
     1801 ttgctatagc ttttggtaaa gctatgcctt tgcattctaa aaaagatgaa gttaaagcta
     1861 aagtttttga actttctttt atggcttgga aatcacaatg cgaagctatg catactatag
     1921 caagagcttg gatagataca gctaaaaaaa atctaaatca aatagctatt atcgatacac
     1981 tagctggaga tatttcttat agaaaaatgt taactcttag tttaattctg aattttttta
     2041 ttaaaagaaa atccaaagaa ttaaacatta accctcagcg tggaagttac gctcctaaag
     2101 aggaagctat aggaatttta ttacctgctt cttttgcaag ttctttaacc aatctatctg
     2161 ttttaatcgc agaaaaaatt gcagtaaatc ttaattttac tgctggagaa aaagctctaa
     2221 aagcagctat aaaaaatgcg caaatttcac aaatttatac ttctaaaatt tttttagaaa
     2281 aattagcaaa taaaggtata aacctaaatt tcgatacaaa tatacattta atttattttg
     2341 aagatattgt agaagatttt aaaatgcaaa aaactaaaat ttttagcatg atgttagcag
     2401 ttagtattat acctagtttt atactcaaaa gcatcttcac tcctttaaaa aacaatcttg
     2461 ccatcgcagc tattttattt agtagcggaa gtgagggttc tccaaaaggt gttatgctca
     2521 ataaccgtaa tattttaagc aatatagcac aaatttctga tgtgctttgc acaagaaata
     2581 atgatgtcat tctctcatct ttgccacctt ttcatgcttt tggacttacc gtaactacga
     2641 ttttgccttt gcttgaaggt attaaaagca tcactttttc agatccaacc gatgccttag
     2701 gggttgccaa agctgttgct aaaaataatg tcactattat gtgtggaact tcaacctttt
     2761 taggaattta tgcaagaaat aaaaagcttg atgctttaat gtttgaaagt ttaagaatag
     2821 ttgtatcggg cgctgaaaaa ctaaaaaatg aagtaagaac tgcttttgaa atgaagttta
     2881 aaaaaagcat ttttgaaggt tacggggcta cggaaaccac gcctgtggcg agtgtaaatt
     2941 taccaaatcg ttttgatgcg gattattggc ttatacatcg tgccaataaa gaaggaagcg
     3001 taggaatgcc tctacctgga actgcagtgc atattgttga tccaaataat tatgaaaatt
     3061 taaaaacaaa tgaagatgga ctcatactta taggcggtca tcaagttatg gtaggctatc
     3121 ttaatgacaa agaaaaaacc gatgaagtga ttaaagaaat tgatggtata agatggtaca
     3181 acacgggaga taaagggcat ttagatgaag atggtttttt atatattgtc gatcgttatt
     3241 ctcgctttgc aaaaattggc ggagagatga tttctttagg tgcaatagaa gaagaaattg
     3301 ccaaatttat agacactgaa gtggttaaat tttgtgccac atctttagaa gatgagaaaa
     3361 aaggggaaca aattgcttta ctcatagaat gtaataatga aatttttgaa agagtatgtg
     3421 aagctataaa aaattctaat atacctacac tttttaaacc tagatattat tttcaaatag
     3481 aaaaaattcc cctcctaggt tcaggaaaag ttgatcttaa aaaagttaaa gaattagcta
     3541 aaaatttagc cctataattt gagcttacaa caaagcccaa attaaaattg gcatagaaat
     3601 aaaagcaaaa agaactccaa aggctacagc gcttacggct aaattactat ctagtttagc
     3661 tttcattacc atagctcctg ctaaagtcat agtaggagct gcactttcta taatagcaac
     3721 gatagtagaa tcttttaatt ctaaattaaa tatttttaaa caaaatacaa aaaataaagg
     3781 agctaaaatc attttagcaa agatgacaac tattgtaggt ttgtaagagg ttttaatcgc
     3841 cataaagcca agtcctaaac ctatagcaaa aagtgcaaca ggggttgcag aggcaccaaa
     3901 taaacgaata ggagagaaaa taaattcagg taaagtaatt aatttgcaca aaaaaccaaa
     3961 aagcaaagct aaaaaaggtg gaaaactaag aattttttta acattagcaa gtaaactgac
     4021 tttttctcca tttcccaaag aaagtataaa aggtccaaaa agtgatatag gtaaagttgt
     4081 ggctaaagca tcgtaaaata taacttcagc gctaaattgt gggtcattaa atataccagc
     4141 aacaataggc atacccacaa atatagtatt tccaaaacaa gaaagcaaaa acatactgac
     4201 taaagttact ttagaaaaat gaaaaacttt tccaataaga atagcaaaaa aagctgctag
     4261 tatacagcta aacaatccaa taaaaataaa aataatcaat gaaaaatcaa aatttaaatg
     4321 atatgcttta tcgaaaatca aacaaggtaa agcaaaaata atagcaaaat ctaaaaaagt
     4381 cctagcttgt ttttgcttta aaacgccaat tcttttggca aaatatccgc ctgcaagtaa
     4441 aataaaaatt gtaaataatg gtataaaaac aaacattgaa taatcctttt taagggatgg
     4501 tttttgaaaa cggatagaat tatattctt
//
LOCUS       DAZAND010000112         4340 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.113, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000112 DAZAND010000000
VERSION     DAZAND010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4340
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.113"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            29..1249
                     /locus_tag="ACHDOB_001610"
     CDS             29..1249
                     /locus_tag="ACHDOB_001610"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HFN3326518.1"
                     /translation="MEKSLLFHFRRIGVEFIIFSVYAVFSISWAATGSLMPLISNDLA
                     LNTQQATLITSMIVVAKIFGASFTAFLVYKFGLKKGYFLGCILMSSGIFLSFVDSYSG
                     ILVIRFLTGLGSACALVCLVPIAQQWFEKKALHFVISFNITSNLVGITLGLILAESIS
                     NYFGNWRDSLSFYAWINLILLILWLFVGKDENKKEEKKNNAKDLIYALKSRVTWGMII
                     FYIGPILFLNSLFTFLPTFYAQYAGFSKELADFAKKEIPALANFAIIFGPYLGLFFKR
                     KNISFKIILLSGGACIFICGFCMLFLQNLVLIQIFAVLSGIFYSMWFPFFFNLPSELK
                     NSNPNQTAYIMSAFWSITFVILSFNLWVVSWSVDKTHSFTLGFVYIFALIFISAILAQ
                     FVLPRRENFIQGEK"
     gene            1251..2402
                     /locus_tag="ACHDOB_001611"
     CDS             1251..2402
                     /locus_tag="ACHDOB_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20 aminoacylase family protein"
                     /protein_id="HFN3326519.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVVQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GIAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(2406..3146)
                     /locus_tag="ACHDOB_001612"
     CDS             complement(2406..3146)
                     /locus_tag="ACHDOB_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaA family protein"
                     /protein_id="HFN3326520.1"
                     /translation="MKILFSPSESKNENCVKNPINENSFIFKELFPYRMEALKHYEEF
                     IKNASLQNLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFAIEKFYKEHFSKALDEYLENE
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIVLEILD"
     gene            complement(3237..>4340)
                     /gene="jlpA"
                     /locus_tag="ACHDOB_001613"
     CDS             complement(3237..>4340)
                     /gene="jlpA"
                     /locus_tag="ACHDOB_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_254520897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein adhesin JlpA"
                     /protein_id="HFN3326521.1"
                     /translation="FLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIASLSQDS
                     GIKIEFSDFKCNADGDFIACLSSNFKTLAKDNKDEYQELFQAKNIKIRSNEIYKGEAN
                     ASISIKEYYNDLFKNQKSIQSNLVFENFKLGEKVVSDINASLFQQDPKISSFINKLSS
                     DSYTLSFDNSINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKGIKFNT
                     QTLAMDEQAINELLNMANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSYIATAK
                     ENLQTLKAQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYSTQGIDS
                     IEKLSINNQDATEALKIILPFIMFSMLMGGASF"
BASE COUNT         1362 a          522 c          736 g         1720 t
ORIGIN      
        1 ttaataaata tctaaaaagg attttaatat ggaaaaatca cttttatttc attttagacg
       61 cattggagtt gaatttataa tttttagtgt ttatgctgtt tttagtatct cttgggcagc
      121 aacagggtct ttaatgcctt tgatttcaaa tgatcttgcc ctaaatactc agcaagctac
      181 tttaatcact agcatgatag tagttgcgaa aatttttggt gcttcattta ctgctttttt
      241 ggtttataaa ttcggattaa aaaagggata ttttttaggc tgtattttaa tgagttcggg
      301 tatcttttta agttttgtag atagttatag tggtattttg gttataagat ttttaacagg
      361 gcttggttca gcttgtgctt tagtttgctt agtgcctatt gcacagcaat ggtttgaaaa
      421 aaaagctttg cattttgtaa ttagttttaa tataacttca aatttagtag gcattactct
      481 aggacttatt ttagctgaaa gtatctcaaa ttattttgga aattggagag attctttatc
      541 attttatgct tggattaatt tgattttatt gattttgtgg ctttttgtag gtaaagatga
      601 gaataaaaaa gaagaaaaaa agaataatgc aaaagatctt atttatgctc taaaatctcg
      661 tgttacttgg ggtatgatta ttttttacat agggcctatt ttatttttaa attctctttt
      721 tactttttta ccaacttttt atgcacaata tgcaggtttt agtaaagaat tagctgattt
      781 tgctaaaaaa gaaattccag ccttggctaa ttttgctatt atttttggtc cttatcttgg
      841 attatttttt aaaagaaaaa atatttcttt taaaataata ctattgtctg gaggagcgtg
      901 tatttttata tgcggatttt gtatgttgtt tttacaaaat ttagtattga tacagatttt
      961 tgctgtgtta tcaggcattt tttattctat gtggtttcca tttttcttta atctaccttc
     1021 agaattaaaa aattccaacc caaatcaaac tgcttatatt atgagtgctt tttggagtat
     1081 tacctttgtt atactatcat ttaacctatg ggtagtatct tggagtgttg ataaaaccca
     1141 tagttttact ttgggttttg tttatatttt tgctttgatt tttatttcag cgatcttagc
     1201 acaatttgtt ttacctagaa gagaaaattt tatacaagga gaaaaataga atgaatttaa
     1261 ttccagaaat actagactta caaggcgaat ttgaaaaaat tcgtcatcaa attcatgaaa
     1321 atcctgagct tggttttgat gaattatgta ctgcaaaatt agtggtgcaa aaattaaaag
     1381 aatttggtta tgaggtttat gaagaaatag gaaaaacagg tgttgtgggg gttttaaaaa
     1441 agggaaatag cgataaaaaa ataggacttc gtgcagatat ggatgctttg cctttacaag
     1501 aatgcacaaa tttgccttat aaaagcaaaa aagaaaatgt aatgcatgct tgcggtcatg
     1561 atggacatac tacttcttta ttgcttgctg caaagtattt agcaagtcag aattttaatg
     1621 gcactctaaa tctttatttt caacctgctg aagagggttt gggtggtgct aaggcaatga
     1681 tagaagatgg attgtttgaa aaatttgata gtgattatgt ttttggatgg cacaatatgc
     1741 cttttggtag cgataagaaa ttttatctta aaaaaggtgc gatgatggct tcttcggata
     1801 gttatagcat tgaagttatt ggaaggggtg gtcatggaag tgctccagaa aaggcaaaag
     1861 atcctattta tgctgcttct ttgcttgttg tggctttaca aagcatagta tctcgcaatg
     1921 ttgatcccca aaattcagca gttgtaagca taggagcttt taatgcagga catgctttta
     1981 atatcattcc agatattgca acgattaaaa tgagtgttag agcattagat aatgaaacta
     2041 gaaagctaac tgaagaaaaa atttataaaa tttgtaaagg tattgcacag gctaatgata
     2101 tagagattaa aatcaataaa aatgttgttg caccagtgac tatgaataac gatgaagctg
     2161 tggattttgc tagtgaggtt gcaaaagaat tatttggcga aaaaaattgt gaatttaatc
     2221 atcgtccttt aatggcaagt gaggattttg gatttttttg cgaaatgaaa aaatgtgcct
     2281 atgctttttt agaaaatgaa aacgacattt atttacataa ttctagttat gtttttaatg
     2341 ataagctttt agctagggct gcaagttatt atgcgaagct agctttaaaa tacttaaaat
     2401 aaaaactaat ctagaatttc aagcacaatt tcttccttta aacctttgat ttgaatttct
     2461 ttgagtttta ggtttgaagg aaggtttgct aaaagctctt tattgttttt tacttggttt
     2521 tttgcactta tggagagtaa aattcctcta taagctttag caaaatgact gatgacttta
     2581 ccatttttta caaatttata agtataaaat ttcttttttg gagtataaaa tttatcataa
     2641 aatcctgctc taaggtcaag tatttcctca ttttctaagt attcatctaa ggctttacta
     2701 aaatgttctt tataaaattt ctctatggca aaatttccta ttttagcccc ttgcttgaat
     2761 ttataaaagg gtagggtatc attagctctt acaacgccaa aaagattaga aaatataaga
     2821 gtattttcta aaatataagc ttggcttttt ttatctaagg ctttaaaatt aagatattca
     2881 taacttaccc cagtataaag caatatagct tcttgggtgg gagcttgttt taagtcgtgt
     2941 ttaaatttat caatttcatt ttcgttttta atgccaaaaa gttcttgtaa attctgtaaa
     3001 cttgcatttt tgataaattc ttcataatgc tttaaagctt ccattctata aggaaataat
     3061 tctttaaata taaatgagtt ttcattgata ggatttttta cgcaattttc atttttgctt
     3121 tcactagggg agaataaaat tttcatttta gccttttttg ttaatgttat gaaacattaa
     3181 gagcaaagaa tttaatcttg cttttaatgt ttttgaagtt tttatcattt taaaatttaa
     3241 aatgacgctc cgcccattaa catggaaaac atgataaatg ggagtataat ttttaacgct
     3301 tctgtggcgt cttgattgtt gatgcttagt ttttctatgc tgtcgattcc ttgtgtgcta
     3361 tagtcactaa cagggatgtt tttaaatttt aaatcaaggt tgagtttata atcatcattt
     3421 tgagtgatat tgtttaaaat agctaaagct ttatcaaaga ttaatgcttg ttcttcattt
     3481 tgactttgag cttttaaggt ttgtagattt tccttagcag ttgctatata gctactaaat
     3541 acgccttcag ttttaagagt tgaatcaatt ttaaaattat ttaagatgat gtatttttgg
     3601 attgtattgc taaaatctga agcttgttcg tagtttgcca tattaagaag ttcattgata
     3661 gcttgttcat ccatagctaa agtttgagtg ttaaatttta tacccttaga atcaaggtaa
     3721 ttaagtaaat cttcttttag atttatattt agatttgtat tgaaatttaa ttttgcgtta
     3781 taaaatttta tatcaagatt atctagataa ttgttttctt gtttgttgat agagttatca
     3841 aatgataaag tataagaatc cgagcttaat ttattgataa aagagctgat ttttggatct
     3901 tgttgaaata agcttgcatt gatgtcgcta acaacttttt ctccaagttt aaaattttca
     3961 aaaaccaaat ttgattgtat gcttttttgg tttttaaaaa gatcgttgta atattcttta
     4021 atgctaattg atgcatttgc ttcgcctttg taaatttcat ttgagcgaat tttgatattt
     4081 tttgcttgaa atagctcttg atactcatct ttattatctt ttgcaagagt tttgaaattt
     4141 gaacttaaac acgctataaa atcaccatct gcattgcatt taaaatctga gaattcaatc
     4201 tttattccag agtcctgaga aaggcttgca atttcttgtt taactgtttg atttagttga
     4261 ttttcatatt ttttaactgt tttttcatct atggaatttc cgcaagctga aaacaaaaca
     4321 gctattccaa tagagagaaa
//
LOCUS       DAZAND010000113         4288 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.114, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000113 DAZAND010000000
VERSION     DAZAND010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4288
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.114"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(16..765)
                     /gene="mreC"
                     /locus_tag="ACHDOB_001614"
     CDS             complement(16..765)
                     /gene="mreC"
                     /locus_tag="ACHDOB_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HFN3326522.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGEKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINIGDEILTSGLDNIFFSDIPVGIVN
                     RIDDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(755..1795)
                     /gene="mreB"
                     /locus_tag="ACHDOB_001615"
     CDS             complement(755..1795)
                     /gene="mreB"
                     /locus_tag="ACHDOB_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HFN3326523.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGLDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(1807..3030)
                     /gene="clpX"
                     /locus_tag="ACHDOB_001616"
     CDS             complement(1807..3030)
                     /gene="clpX"
                     /locus_tag="ACHDOB_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HFN3326524.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(3023..3814)
                     /gene="lpxA"
                     /locus_tag="ACHDOB_001617"
     CDS             complement(3023..3814)
                     /gene="lpxA"
                     /locus_tag="ACHDOB_001617"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HFN3326525.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVGKDTKIGNDVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGITPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(3814..4254)
                     /gene="fabZ"
                     /locus_tag="ACHDOB_001618"
     CDS             complement(3814..4254)
                     /gene="fabZ"
                     /locus_tag="ACHDOB_001618"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HFN3326526.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVRGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
BASE COUNT         1366 a          912 c          485 g         1525 t
ORIGIN      
        1 agtctaatcc ttgacttata aattatctac tacatataaa taagcaggaa tactaatctt
       61 aacataaggc tttacttcta cactttgata catatcttca tcatcaattc tattcacaat
      121 cccaacaggt atatctgaaa agaaaatatt atcaagtcca cttgttaaaa tttcatctcc
      181 gatattaatt tttgcccatt ttggaataaa tttaaccaca atcctgccat cttcaccttg
      241 gattaaacct ggagctttgg attttcctat ataaacagaa aaaacacact gatcatcacc
      301 ttgtaaaaga gccattgctc taccattttt attaatagct atacctgcgg tatatccttg
      361 atatatcaaa ccacgatttt taccaacggg aattttactc caatctaacc ataatttttt
      421 ataatcattc aattgaacat aagaaataac tctagttaaa gaaacttgag gtaaatattt
      481 tgtagaattt tgatcctcta aaatacgatt taattgattt gcaaaactag ttacctttac
      541 agcaatatct tctaattctt tatttctagc ttttagttgc tgaatttgat ttgcttgatt
      601 aaagtgttct gaaatttttt ctcccaaata atctttaata ttataaaaat tacctataac
      661 aaaatcatta acacggagaa cattttgctt aataagtcct ccataataaa aagatataaa
      721 aaccaaaaag gctaagacaa gaacataaaa aatcttattc ttcattggtt aattgttgta
      781 ataatgaaat ttcctctaaa gctttacctg ttccttttgc tacagctaaa agcggttcat
      841 ctgcgatata aactggcaaa cgtacaattt cacttaagta tttatcaaga ccacgaatca
      901 atgctccgcc acctgttaaa actacaccat tttctactat atcacttgct aaatcaggcg
      961 gcatcatttc aagaaccatt tttaaagcat cagcaatttc ttttaaatac tcacgcatcg
     1021 cttctcttac atcttcgctt gtaagttcaa tacgacttaa aagtccactt acttgatcgc
     1081 gtccttttac caccatagaa agctcttttg gaagttgtat tgctgaacct atagtgattt
     1141 taatctcttc gcctgttctt tcacctatga taagattgta tttttctttt acataattaa
     1201 ctatactcat atcaagctta tctccagccg tacgaataga ctttgaaatc acaagtccac
     1261 ccaaagaaat cactccaatc tcagtagttc caccccctat atctactacc aaatttcctt
     1321 taggctcttg tataggtaaa cttgcaccaa tagctgctgc cataggctct tcaatcaaaa
     1381 atacctctct tgcacctgcg cttaaagcac tttctcttac cgcttttctt tctacttgag
     1441 ttaaaccata aggaacagaa atgataattc taggacgtaa aaaacttttt ctacggtgtg
     1501 ttttttctat aaaatagcgg atcatttttt cagtcatatc aaaatctgca atcacgccat
     1561 ctttcatagg acgaatagct tcgatattgc ctggagtttt tcccaccata tctttagctt
     1621 ctttacctac ggctaaaatt tttgctttgg aaccatacct ttctctttca actgccacaa
     1681 cagaaggctc atttatcact atacccttat cttttaccaa aactagggta ttagctgttc
     1741 ctaaatcaat ccccatatca ctagaaaaaa atcctataag ttgatctaat atcatttcta
     1801 tcctttttaa cttatttttc tttttattaa taatgccttt gcattgtctt taacaacttc
     1861 tttggttatt acaatatcat agtttttata ctctggtaat tcaaacatta aatctaccat
     1921 catttcttct ataatacttc taagccccct agcccctgtt tttctctcca atgcaagttg
     1981 tgcgatagct cttagggcat cttcttcaaa ttttaaattc actccatcaa tagcaaaaag
     2041 cttttgatat tgcttaataa tggcattttt aggctcagtt aaaattctta ccatatcttc
     2101 ttcattaagc tcatttaaag atgcaatcac atgcaaacga cctataagct caggaatcaa
     2161 accaaaatgc accaaatcat caggttcaat tttctcaagt aaagctttat tttcttcttt
     2221 tgcatcatca aaaaagccca caactttatc gccaagtttt ctttttaaga tagtttccaa
     2281 accatcaaaa gctccaccac aaacaaataa aatatttgaa gtgtcaattt gtataaactc
     2341 ttgatttgga tgttttcttc ccccttttgg tggaatattt accaaacttc cttcgataat
     2401 cttaagtaaa gcttgttgca cgccctctcc acttacatca cgagtaatag aacgattttc
     2461 actcattcta gcaattttat caatctcatc aataaaaact ataccttttt gagctctttg
     2521 cacatctcca tctgcagctt gtaaaagacg tgttaaaata ttttccacat cctcacctac
     2581 atatcctgct tcagttaaag aagttgcatc acaaattgct ataggtacat ctaaaaattt
     2641 agctaaagtt tgtgccaata aagtttttcc acttcctgtt ggcccaacaa gtaaaatatt
     2701 tgacttaaaa agctctgtat catcatcttg aagttcggct ttaaaaagtc ttttataatg
     2761 attgtatact ccaacactaa aaactttttt agctctatct tgtcctatga cataacgatc
     2821 tagataagct tttaattctt ttggagtgat atctttaaat tctgtattat ggctttgttt
     2881 aggttcttta aattcttttt cttctccata aataatacta taagcacctt caacgcaata
     2941 ttcacaaata aaagcatcat cattttcatt tgctaaaatt cttctttgtg gattctccac
     3001 ttcattgcaa aaactacatt ttctaggcat tatttttacc cctatagaca ggaattccgc
     3061 gctttgtttc taatataaaa tggcacattt ttttaacatt ttcactttct tgattttcaa
     3121 gcaaattttt agcattttct tttaagtctc cttgtctaaa taaagtttta aaagctctgc
     3181 taagtctatc tacttcatct ttatcaaaac gacgacgaat acctactaaa tttaaacttc
     3241 taatacttgc acgatttcct tctgctaaac aaaacggtac tatatcctga gaaagtgcac
     3301 ttgctcctgc tatcatacaa ccctcaccta ctttgacaaa ttgatgaata ggtgtaatcc
     3361 cgcctacaac cgtaaaatct ccaagctcta catgtcctgc taaagttgca ttattagcta
     3421 aaataatatt attacctaaa agacaatcat gagcaatatg acaataagcc ataataaaag
     3481 cattatcgcc tatacgagta aaaccatctc ctttagctgt acctgaattt atcgttgcaa
     3541 attctctaat agttgcgttt tttcctataa caacaccgct tttttgttct tctttataag
     3601 atatatcttg aggaatatca cctactatgg cataagaaaa cacacgagaa tgatcgccta
     3661 tagttgtatc tgaaagaatt cgagcacctt gtttgatgac aacatcatta cctattttag
     3721 tatctttacc tacataagca taagcttcta ttacaacatc gtcaccaagt tgtgcaccct
     3781 cttcaatcac cgcacttgga tgaatttttt tcattattta tccactatca tagctttaag
     3841 ctcggcctct gcaactaaat ttccatctac aaaagcttgc cctttaaaaa tccacatatt
     3901 accacgattt ttaaccacgc tcatttcata atcaagtcta tctccaggac gcacaggatt
     3961 tctaaatttt gctccatcta tgcctgtgaa ataaactact ttactttttg gatccacttt
     4021 atcttccata ctttcaaaag ctaaaactcc acctgtttga gccatacctt ctaaaatcaa
     4081 aactccagga taaataggat gccctggaaa atgtcccata aaaacatggt cacttatgct
     4141 gatgttttta tatcctcgaa ccacttcttt aacttttaat tctgtaattt tatctactag
     4201 taaaaaagga taacggtgtg gtaagatttc ttgaatttgc attacatcta tcattattaa
     4261 attaaccttg aaaacaatta aaaatttt
//
LOCUS       DAZAND010000114         4187 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.115, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000114 DAZAND010000000
VERSION     DAZAND010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4187
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.115"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            24..2078
                     /locus_tag="ACHDOB_001619"
     CDS             24..2078
                     /locus_tag="ACHDOB_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HFN3326527.1"
                     /translation="MKFKKSLLCFLILSGALLKAEEKYQLNDVVVSASGFEQDLVDAP
                     ASISIITKEELEKKPIKDIGEAIGDIPGVDVTMNKTGTYDFSIRGFGSSYTLVLIDGK
                     RQSVANGFYDNGFSGSESGYLPPLSMIERIEVIRGPASTLYGSDAVGGVINIITKKNP
                     DKTEANIEFNTLLQQHSNHYGNAGGFNAYVATPLIEDTLSISARLKYYDKAASDLKWP
                     TPVWNNSQQRPDNYQIASHSPGAFTSLGFGSRLNWTVDDKNNIYFDIERYINEISVNS
                     TSSRAIKSERQLFKDNIVLNHDGNYDFGSTNSYLQYGSTKDKELHSQIWVGEGKVVLP
                     WNLGQYGNLVNTFGARIDYEMLKNDQASAGSQIRGKNLDQTTVALYGENEYFITDDLI
                     FTTGLRYIYSDLFDSEFTPRVYLVYHLNDNIAFKGGVSKGYKTPAAKELTNGYYNYSN
                     DNAYFGNPDLKPEESINYELGVDFRIFDFAHYSITGFITDFTNQISSEDLTGMQNGIN
                     CSNGTVCTRPINLGKTQTKGIEFAFNTKTYNGFSLNSSYTFMDNRYKDGQKNWFGGDR
                     IENLPRHIAMLKLNYERGKFSSYIKTRARLDTIAKAKGGGNGSLPWQKYKPFYIVDLG
                     INYKINKQSSLSFVVQNLFDKNFFDPQVTKWAGANPAGYANRYQDYTEGRSFWLSYKY
                     DF"
     gene            2161..2748
                     /locus_tag="ACHDOB_001620"
     CDS             2161..2748
                     /locus_tag="ACHDOB_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HFN3326528.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGKFCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDNMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFAEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNIIRTPLLDFAYMWFLKEKWEKY"
     gene            complement(2790..3887)
                     /locus_tag="ACHDOB_001621"
     CDS             complement(2790..3887)
                     /locus_tag="ACHDOB_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN3326529.1"
                     /translation="MFGSKINHSDLQKLEEENKNLAHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIVQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGDITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(3897..4112)
                     /locus_tag="ACHDOB_001622"
     CDS             complement(3897..4112)
                     /locus_tag="ACHDOB_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HFN3326530.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
BASE COUNT         1391 a          540 c          751 g         1505 t
ORIGIN      
        1 ttaatttgac tcaaattaaa aatatgaaat ttaaaaaaag tttactgtgt tttttaattt
       61 tatctggagc tttgttaaaa gcagaagaaa aatatcaact taatgatgtt gtggttagtg
      121 ctagtggttt tgaacaagat ttggttgatg cgcctgctag tatttctatc attacaaaag
      181 aagagcttga aaaaaagcca attaaggata taggggaggc tataggagat attccaggtg
      241 tagatgtgac tatgaataaa acaggcactt atgattttag catacgaggt tttggtagtt
      301 cttatactct agttttaatt gatggaaaac gtcaaagtgt tgcaaatgga ttttatgata
      361 atggctttag tggcagtgag tcaggttatc ttccaccttt atctatgata gagcgtattg
      421 aggttatacg tggtccagct tctacgcttt atggcagtga tgctgtaggc ggtgtgataa
      481 atattatcac taagaaaaat cctgataaga ctgaggcgaa tatagaattt aacactcttt
      541 tgcaacagca ctctaatcac tatggcaatg ctgggggatt taatgcttat gtagcaactc
      601 ctttgattga agatacatta tcaatttctg caaggttgaa gtattatgat aaggcagctt
      661 ctgatttaaa atggcctaca ccggtttgga ataatagtca acaaagacct gataattatc
      721 aaattgctag ccatagtcca ggtgctttta ctagtttagg ttttggttct aggcttaatt
      781 ggacagtaga tgataaaaat aatatatatt ttgatataga acgatatatt aatgaaattt
      841 cagtgaattc tacaagtagt agggctatta aaagtgaaag acaacttttt aaggataata
      901 ttgttttaaa tcatgatggt aactatgatt ttggttcaac taactcatat ttacaatatg
      961 gtagcactaa ggataaggag ctgcatagcc aaatttgggt aggagaaggt aaggttgttt
     1021 taccttggaa tttaggtcaa tacggtaatt tagtaaatac ctttggtgca aggattgatt
     1081 atgagatgtt aaaaaatgat caagcaagcg caggtagtca aataagaggt aaaaatcttg
     1141 atcaaaccac ggttgcgctt tatggggaaa atgagtattt tataacagat gatttgattt
     1201 ttactacagg tttgcgttat atttatagcg atttgtttga ttctgaattt acgcctaggg
     1261 tttatttggt ttatcactta aatgataata tagcctttaa aggaggtgtt tcaaaaggct
     1321 ataaaactcc tgctgctaag gagttgacaa atggatatta taattatagc aatgacaatg
     1381 cttattttgg aaaccctgac ttaaaaccag aagaaagtat aaattatgaa ttgggtgttg
     1441 attttaggat atttgatttt gcacattatt ctatcacagg atttattact gattttacaa
     1501 atcaaatcag tagtgaagat ttaacaggta tgcaaaatgg tattaattgt agcaatggca
     1561 ctgtttgtac gcgtcctatt aatcttggaa aaacacagac taaaggtata gaatttgcat
     1621 ttaataccaa aacttacaat ggctttagcc taaattcaag ttatactttt atggataatc
     1681 gctacaaaga tggtcaaaaa aattggtttg gtggtgatag aatagagaat ttaccaaggc
     1741 atatagcaat gttaaaatta aactatgagc gaggtaaatt tagctcctat ataaaaacac
     1801 gagcaagact tgatactata gccaaagcaa aaggtggcgg taatggtagt ttgccatggc
     1861 aaaaatataa gcctttttat atagtagatt tagggataaa ttataaaatc aataagcaat
     1921 ctagcttaag ttttgtagta caaaatcttt ttgataaaaa tttctttgat ccgcaagtta
     1981 ctaaatgggc tggagccaat cctgctggat atgcaaatcg ttatcaagac tatacagaag
     2041 gaaggagttt ttggttgagt tataaatatg atttttaatt ttttaaggct ttaattacct
     2101 ttatattttc aaaaaagcaa aaataaagta caatgtgaaa aataaataaa aggttttatt
     2161 atggcgttta aaaatttaaa agaactttct tttgaaaaat caaattatat taagcctaag
     2221 agatttgctt atgaaagtaa tggtaagttt tgtacttggg attttataga atctaaagat
     2281 agtgtttcag tgcttttgta tcataaagaa ttagaaagtt ttatttttgt acgccaattt
     2341 cgtataccac tttggtatca tcaaatgcat gataaagatt atgtaaaaga tgataatatg
     2401 ggctatacta tagagctttg ttctgggctt gtggataaaa aattatcttt agaggaaata
     2461 gcaaaagaag aatgtataga agaactagga tatgctccta aaaatttaga aaaaatagga
     2521 gatttttata cagggtttgg ttcaggtgta agcaagcaaa gcttttattt cgcagaagtt
     2581 gatgaaaaag ataaaatttc ttcaggaggt ggagttgatg atgaagagat tgaagctgtt
     2641 tatgttaagg tgcaggattt tgaaaaaaaa tgtaaaaata taataagaac gcctttgctt
     2701 gattttgctt atatgtggtt tttaaaggag aagtgggaaa aatattaaag attatttagg
     2761 ttaaacctta aaaaggttca acctaggatt taatgatctg attcatcaag catttcttta
     2821 aatacattga aaagatcaag cgatgcattt tcagcaactt cgcatttatt aattatgctg
     2881 tgttgagtaa tatctttgct aatatcttct gtatttgcta ttgttatagc attattcata
     2941 ttttcatgaa ctttttcatg tggctcgtta atttttaaga agcttttatt ttgcccaaat
     3001 ctttcttttc ctgtgctagc aagccatttt cctaagcgac aagatgtatg atcggctaat
     3061 tgctttcctg atttggaaaa aatttcttta taaccattta atttaaaagc tatatgatct
     3121 agttttgcta aagatacgaa agcttctgaa gcgataccaa ctgcatttga attagtagaa
     3181 tgcgcttcat ttactaagtg ggtaaatttt tcggaaaaac tcataatatg agcattagaa
     3241 tctatagaaa ttttttcaac ttgctcactt tgagtataca tttcatttgc attttgcttt
     3301 agaaggttga tattcatttc aacttctgtg gttgcttttt gtgttttttc agctagtttt
     3361 cttacttcat cggcaacaac agcaaaacca cgcccatgtt cacctgcgcg tgcagcttct
     3421 atggcagcgt taagagctaa aagattggtt tgatcggaaa catctttaat tagattaatt
     3481 acattagtaa tttcatctac acttctatgc aatgttcctg caacatctct tgttttattg
     3541 gctgattctg taatatcccc taaggaagca ttgatagaat tagcaatatg gttaagttca
     3601 tccatttcag caagagaagt tttagaatag ctagagataa cttctgcctt atttacattt
     3661 tctaacatat cgccttgaac aatagtaata ttttttaaaa ccccagttaa taaaacattt
     3721 aaaagatctg ttttaagttt agactctaaa gccgcttgtt ctaatgatgt aattttattt
     3781 tttaattcta aattttccga ttgaaatttt tcaattttat gtgcaagatt tttattttct
     3841 tcttcaagtt tttgaagatc agaatggttt attttacttc caaacattgt tttgccttat
     3901 tttttataat ttgctagata ttggctaagt tcatctttta catgaagctt ttcttttttt
     3961 aaagttgaaa tttccatgct gctaagagaa gttctacctt cttctgcatc tttaatcatg
     4021 tcatcaagtt cattatgacg atcaaatagt ttatcaaaat gagcatcttt accttttagc
     4081 tctgacatta attctctata ttcatgtagc ataaactctc cttgtattag tgaaatttaa
     4141 aattcattta acaaggtatt ttacactatt aaaagatatt tttggct
//
LOCUS       DAZAND010000115         4173 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.116, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000115 DAZAND010000000
VERSION     DAZAND010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4173
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.116"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            283..785
                     /gene="traN"
                     /locus_tag="ACHDOB_001623"
                     /pseudo
     CDS             283..785
                     /gene="traN"
                     /locus_tag="ACHDOB_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108599.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraN"
     gene            1051..2633
                     /locus_tag="ACHDOB_001624"
                     /pseudo
     CDS             1051..2633
                     /locus_tag="ACHDOB_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807409.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
     gene            2881..3780
                     /locus_tag="ACHDOB_001625"
     CDS             2881..3780
                     /locus_tag="ACHDOB_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326531.1"
                     /translation="MHLNEAKGFMEKGDEAFKKAFANNIGQEIQNRTDLTSEEKAEIA
                     LAASAHAGFSVLGNGAEIQSSASSKRGIGNVETFSEAQKAAYNEIMERASLKTLSTTK
                     GMDSSWSNTLSGGDSTAYSKMVGYTQSYTQTEQGIQSVSTNNIDNTLNVVARDLAAGD
                     NKDFSNLNTAQQNEYFAKADNYVSDMVKNDPAQLAQYNSQYGAQSIVSPNNTTMPHAA
                     GMNFKTIDGSERSVLTQSNLNQDQVNQSSKRTSNTTTMPDSQEVKSGATHSQIAQDNK
                     KGSNAIRETSKNWNPIGKDTPSI"
     gene            3801..3932
                     /locus_tag="ACHDOB_001626"
     CDS             3801..3932
                     /locus_tag="ACHDOB_001626"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326532.1"
                     /translation="MFKDKIESKIAQFTEKAIKNNDNIKTNAIKAITTDLTVVNTPK"
BASE COUNT         1495 a          608 c          728 g         1342 t
ORIGIN      
        1 aaaaacaata aattaatata gcttttgttt ttaatttttg aatattttta aacttattta
       61 ggcggagatc atctgcttta gttattttta tttttaatat tcacgcaata agacagattt
      121 attttgaaag tttatcttat tgcttttctt attttcactg tgcatcattt gaatttgaaa
      181 ttattttttt caatttcttt aaggttgtat agcggttttt tcacatttgc gctgattttg
      241 tattttttaa taataaggtt tcaaatagtt cagtatctat aaatattcaa tggacaagat
      301 aatcgttgta aaaattggga tatgtttggc ggtttacttg gtggtggatg ttgtgataag
      361 gataatgtat ttttaggatt tgtaccttgt aaagaagata agaaaaagct tgctaaatta
      421 aacgatgcag gaaaatgtca tgaagtagga acttattgtt ctaaaaaggt tagtttaggt
      481 tttactaaaa tttgcgttga aaaaagaaaa gtttttgttg cttcaattct aaattaggaa
      541 gaattttcaa tgaacaagga cgccctcagc ttggaaaagg gtggagtagt gcggaaggtc
      601 cgcaatgcaa aggcttcact cctgaagaat ttcaaaaatt agattttagc gaaattgatt
      661 taagtgaatt cattgctgat attgtaggaa gttttgacac aggaaaaata caagctgatt
      721 ctgtgaaaat acaagaaaag attcaaaaca atatcgagaa tgtaacgaaa aaacctacaa
      781 attaaaaaag aaaataaatt attagaaagg agagaagctt agttaaaagt ttgtttggta
      841 agccacaagg gagtttcgcc ccttaagaaa aggggcaagg ctaataagcc ttgacagtaa
      901 ttatacaaat tagtataatt ataagtatga gtcgtgtcat atagttcacc ccctttctag
      961 ggtgtgatta tgccacaggg ttgcagcctt gtggcaaaac ccttaatgca attataccaa
     1021 acaaactctt taacttcttt aatatagtcc atgaaaagat tttacttgtt attccttagc
     1081 actttgtttt ttgcaccttc atttttattt ggtgcaactg aaatagctaa tggaaatcta
     1141 atttatactt ggggttacgg cgatgtaatg aatgaaatca tgcaagcggt taaaggaata
     1201 accactgaaa caagttatat cgttaatgca gccttagcta tttcattatt actttttagt
     1261 attaaaaaag caatggatgg acaaacaaac cctgtgtttg aatttggaaa aatgtttgta
     1321 ctttttgctg tagtgtgggt catgttttta aaagcaccaa atgacaataa tcaccgcttc
     1381 atgattcatg atgaagtcac tagcaaagat tatgtcattt ctcaaattcc tataggtata
     1441 ggaaaaagct ttgcattaat gacacaattt gagaaggtta tcttagaagc tatggaaaaa
     1501 catttttcaa ctccacaatc tacaaatttc tctaatgcag gtttaggttt ttcacttcaa
     1561 gtaatgagta ctttaccaag tgtaaagctt tcggctattg atgcaacttt gcaaaaaaat
     1621 attgattttt actttagaaa ctgcgtttca gtaggtatct tgcttaatca acaaggtaga
     1681 aatctttttc aaaactctga taatttaatg caagatcttt tcacaaacat aggcaatggc
     1741 tctcagctta ctcctttgtt cacaaataac aataatattg aagaacaaag tgttgtgcct
     1801 tgttctgatg caggtcctca aatcgttgaa atgattcaaa aagatacaga tgaagctatg
     1861 aagatccatg ctgctttgct tggtatggta gatgatatga caaattatga gcaaaagttc
     1921 ttaggcgctg cacaaatcta taacgaacaa gctgtaagtg ctagatctta tttgcaacaa
     1981 tccatgataa tgcttgcttc tcaaaatgca atcattaata ccgctaaatc agtaggatta
     2041 aatcctgctt ctgtggctgc aaatactgct tatgcggatc agcaatttta cgcaagtatg
     2101 cacaagcaca aggacacttg gcgcaaactt atttgccttt agctaaagct tatttaacag
     2161 ctatcatcat aggtttgtct tggcttgttg ctttgctttc tattgtgttt ggctcttacg
     2221 cacatattaa gatgtttttt actctatgta tttggatagt gctttggact cctatacttt
     2281 gtattattaa ttttataaat gattttaatc ttatgaatgt tgcacaagta ataacaggtg
     2341 gaaaagcagc tttaagctta ggagataaca tgcttatctt taaagaagta gcaaatagat
     2401 caaatttcat gaattacctt gtaatgagta ctcctgtttt agcttatgct atagctaaag
     2461 caagtgagca aggatttgta acttttgctt ctggattatc tcaagctcta acaggtgctt
     2521 caaaagctgc tggaagcttt gcaaatcagc aagccttatc tacacaaact agcattgcta
     2581 ctcctagagg agatgaagtt tggtcgatga atgcaggggt agcatcgctt caatatgcaa
     2641 gaaatataga tggtgtggtt actaaattta atactcaatc agttatgggt gataatacaa
     2701 agaattctga aatctctaat gcaaatatga caggaacaaa tgttgatggt atgatgtcag
     2761 gcgccaaact tagcgcagga actatgacaa ctgttaatag cgtatctcaa gcaaattctg
     2821 atgcttggaa taaaaacttt aatgatcaat attcacatat gagtcaaagc ggtagagcaa
     2881 gtgcatttaa atgaagctaa aggatttatg gagaaaggag atgaagcatt taagaaggct
     2941 tttgcaaata atattggaca agagattcaa aatagaactg atttaactag cgaagaaaag
     3001 gcggaaattg cattagcagc ttctgctcat gcaggtttta gcgttcttgg aaatggtgct
     3061 gaaattcaat caagtgcaag ttcaaaaaga ggtataggaa atgttgaaac tttttcagaa
     3121 gctcaaaaag ctgcatataa tgaaataatg gaaagagctt ctcttaaaac tctatctacc
     3181 acaaaaggta tggattcttc ttggagtaat acgctttcag gtggcgattc tacagcttat
     3241 tcaaaaatgg ttggatatac tcaaagctat acccaaacag aacaaggtat tcaatctgtt
     3301 agtactaata atattgacaa tacacttaat gtggttgcaa gagatcttgc tgctggagat
     3361 aataaagact ttagcaatct taatacagct caacaaaatg aatactttgc aaaagcagat
     3421 aattatgtat ccgatatggt taagaatgat cctgcacaac ttgcacaata taatagtcaa
     3481 tatggcgctc aaagcattgt tagtccaaat aacactacta tgccacacgc tgcaggtatg
     3541 aattttaaaa ccattgatgg atcagaaaga agtgttttaa ctcaatctaa tttaaatcaa
     3601 gatcaagtaa atcaaagtag taaaagaaca agcaacacta caacaatgcc agatagtcaa
     3661 gaagttaaaa gcggagcaac tcactcgcaa atagctcaag ataataaaaa aggaagtaat
     3721 gctattaggg aaacttctaa aaattggaat cctattggaa aagatactcc ttctatttaa
     3781 acaaaaggct ttatagcctt ttgtttaaag ataaaataga atctaaaata gcacaattta
     3841 cagaaaaagc tataaaaaac aacgataata taaaaactaa tgcaataaaa gcaattacga
     3901 cagatttaac agttgttaat actcctaaat aaactccaat taaaatcgaa attgaaatta
     3961 gtaagagaaa acataagaga aataaaattt tattaattat tttagtttcc cttttttctg
     4021 tatttctgtt ttttagaaaa atcatataaa aacttaaaat tgaaaaaaac aacacaataa
     4081 atattaaaaa gctaacaact aagtatgtgg aaagcataat attactcctt gactaataac
     4141 ttattcatat ttttaataaa attataccat att
//
LOCUS       DAZAND010000116         4151 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.117, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000116 DAZAND010000000
VERSION     DAZAND010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4151
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.117"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            90..809
                     /locus_tag="ACHDOB_001627"
     CDS             90..809
                     /locus_tag="ACHDOB_001627"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFN3326533.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLNISFQNKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFETWMQNNP
                     NVKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSDFLDPIFKYFNTEFKG
                     FYKKDLENYLLEKNIFFHKIVFDETRKVQRTKEEAIENALWHLSMNKITTSKEAVSSF
                     VENDIIETIESKIKLLIINNL"
     gene            865..1079
                     /locus_tag="ACHDOB_001628"
                     /pseudo
     CDS             865..1079
                     /locus_tag="ACHDOB_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343702.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1111..2118)
                     /gene="pyrC"
                     /locus_tag="ACHDOB_001629"
     CDS             complement(1111..2118)
                     /gene="pyrC"
                     /locus_tag="ACHDOB_001629"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HFN3326534.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPTLC
                     NLEDLKAYKMRILKACKDENFTPLMTLFFKNYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPRDTKECCGCAAGVFSAPVILPVLAELFKQNSSEE
                     NLQKFLSDNTCKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(2108..2353)
                     /locus_tag="ACHDOB_001630"
     CDS             complement(2108..2353)
                     /locus_tag="ACHDOB_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006276 - plasmid maintenance [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HFN3326535.1"
                     /translation="MKFENLIREILGKKRFELLKFLCENADENGFIMIKISDLEEKLH
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLNIGDKNET"
     gene            complement(2350..2706)
                     /locus_tag="ACHDOB_001631"
     CDS             complement(2350..2706)
                     /locus_tag="ACHDOB_001631"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HFN3326536.1"
                     /translation="MKPKYHFLNNARYALEGLFALFKNEMAFRIELCIIIPAIVFSFF
                     LKVSFLEHLLLISVLILILIVEALNSAIEACVDLITNEWHEKAKIAKDCASAAVFFSV
                     LLALFVWGFILYNICL"
     gene            complement(2703..>4151)
                     /locus_tag="ACHDOB_001632"
     CDS             complement(2703..>4151)
                     /locus_tag="ACHDOB_001632"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:1900727 - osmoregulated periplasmic glucan
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HFN3326537.1"
                     /translation="KNTQNWFITFVFIVAYFALVHVICSLLFIKFFTKFFSILFIISS
                     FLSVYFISFYGVLIDSDMIQNVVQTDIKEVKDLLNLKLILFIVLALLLVFYVVKVKID
                     YYDSFKSHLKIKIINIISGLIVVCAVLIPLSKTFLPFFRNYNEIRMYNTPFYQIYAVY
                     RYYIRFVKAKPEFKTIANDAYRENNHTKKLLVLVVGETARAANYSLGGYTKNDTNFYT
                     KKDNVVFFDNFSSCGTATAVSLPCMFSISKRENYSSSEFQENAMDVLYKTGVDTAWFD
                     NNSGGCKGVCDRLAYKQKLSSDLDENLLAPFKEKLNHLSDQNIIVLHLQGSHGPTYYK
                     RYPSEFKKFTPTCDTNELSKCDNKALINTYDNTLLYTDYLLSEIIKLLKEQKSYESSL
                     FYLSDHGESLGENDIYLHGMPYAIAPSYQTHIPAIFWSNDENLMNLAKEHKGLKLSQD
                     NLFSTLLGYFDVKTSVYEPEYDLLNPKLKANP"
BASE COUNT         1552 a          618 c          525 g         1456 t
ORIGIN      
        1 aggttttaat tagtcattcg agcccaaaaa aagggcttga attttaaaaa tttatgctat
       61 gattttatat attttatcaa ggaaaatata tgaatttatg ggataaaaag gccaaaactt
      121 acgcaagata tcaaaacact ttaaacacca tacaaaagca aacttttgaa tatttacaaa
      181 atttaaatat ttcttttcaa aataaaagca ttatagatat aggatgtgga actggggttt
      241 ggactttaca cttagctaaa gaagctaaag aaattttagc cctagatagt gcaaatacta
      301 tgcttgaaat tttacaagaa gatgctaaaa aactaaatct taacaatata aaatgcgaaa
      361 atttgagctt tgaaacttgg atgcaaaaca atcctaatgt taaatttgat cttgcatttt
      421 taagtatgtc tcctgcttta caaaatgaaa aagattatac aaatttctta aatctagcca
      481 aaataaaaat ttatcttggt tgggctgatt atagaaaaag tgatttttta gatccgattt
      541 ttaaatattt taatactgaa tttaaaggtt tttataaaaa agatttagaa aattatttac
      601 tagaaaaaaa tatatttttt cataagattg tttttgatga aacacgcaaa gtccaaagaa
      661 caaaagaaga ggctatagaa aatgctctat ggcatttaag catgaacaaa atcacaactt
      721 ctaaagaagc tgtaagttct tttgttgaaa atgatattat tgaaactata gaatctaaaa
      781 taaaactttt aattataaat aacttataaa aatattaagc tgatatttat tacaatttca
      841 ctcattattt caaaggagtt tttaatggtt aaaaatttaa tcatcaaatt tggacgcttg
      901 attcttgatg caattgcagc gataagtttt gttgtagctt tgctttattc tctttttatg
      961 atgtttagca ttggattttt agctggttta ttatcgctga tagtcagttt tattgcttta
     1021 tttttaagtt tttttgtaat ctatcttgtt atagatatca gagatgctct tgtaaataaa
     1081 gcttaaattt tccatcttta aggtgggaaa tcaatgtttt aattgaaatt ttaaaatttc
     1141 tccagccata taaggcacga cttgattgta tttatcttca taaacatttg gtacttgcca
     1201 ttctttttct tctaaagtta aaattttatc ttctttaaat tttaaatcat aaattttaca
     1261 agtattatcg cttaaaaatt tttgcaaatt ttcttctgag ctattttgct taaataattc
     1321 agctaaaaca ggtaaaatca ctggggcgct aaatacacct gcggcacaac cgcaacactc
     1381 tttagtatct cttgggtgag gcgcactatc acttccaaac ataacttttt cataaccact
     1441 aaaagcaagt tcgcaaaggg cttctttatc ttcgtaacgc ttggctatag gcttacaaaa
     1501 aagatgagga ttcattttac ctccgataac atcatctaaa gtgatgatta aatgatgtaa
     1561 agtgattgtc gcgtataaat tttcataatc ttttaaaagt tcacataaag ttttagtggt
     1621 aatatgctcc ataacaatct taagtcgtgg aaaatgtttg gctaattttt cataaatttt
     1681 agcaaaatta ctttccctgt ccattacaaa atcattggtt tctccatgca ctaacaaagg
     1741 aatatttaaa tcactcatag cctctaaagt aggttttaaa tactctatat caaaacttga
     1801 aactccacca tttgaatttg ttgtaattcc tgctggataa agcttaatgc caaaaatttc
     1861 atctttagca ctgtaaagaa atttctcatc ataattttta aaaaaaagtg tcattaaagg
     1921 agtgaaattt tcatctttac aagccttaag gatacgcatt ttataagctt ttagatcttc
     1981 taaattgcaa agtgtaggga ttaaatttgg cataatcaca gctgcacaaa aatctcttgc
     2041 actcaaaggt gcaataagtt ctaacatttg attatctctt aaatgcaaat gcatatctaa
     2101 aggattttta agtttcattt ttatctccta tatttagctg ataaaatcca tttttaagac
     2161 gcttaaaaag ttttttttct tctaaaaact taaaagtagc gatgatggta ggtttacttt
     2221 gatgtaattt ttcttcaaga tcactgattt taatcataat aaaaccattt tcatcggcat
     2281 tttcacataa aaattttaac aattcaaaac gcttttttcc taaaatttct cgtattaaat
     2341 tttcaaattt cataagcaaa tattatataa aataaagccc caaacaaaaa gagctaaaag
     2401 cacactaaaa aacactgccg cactcgcaca atctttagcg atttttgctt tttcatgcca
     2461 ttcatttgta atcaaatcaa cacaagcttc aattgccgaa tttaaagctt ctacaattaa
     2521 gataagtatt aagacactta tcaataacaa atgctccaaa aaactaactt ttaaaaaaaa
     2581 actaaaaact atcgcgggga taataatgca aagttcaatt ctaaacgcca tttcattttt
     2641 gaataaagca aaaagccctt ctaaagcata tcttgcgtta tttaaaaaat gatatttagg
     2701 cttcatggat ttgccttaag tttaggattt aataaatcat attctggttc ataaacactt
     2761 gtttttacat caaaatatcc taaaagagtg ctaaaaagat tatcttgaga aagttttaaa
     2821 cctttatgct ctttagctaa attcattaaa ttttcatcat tgctccaaaa aatagcagga
     2881 atatgagttt gataacttgg tgctatagca taaggcatac catgaagata aatatcattt
     2941 tcacccaaac tttcaccatg atctgaaaga taaaacaaag aactttcata gcttttttgc
     3001 tcttttaata gttttataat ctcacttaaa agataatctg tataaagtaa agtattgtca
     3061 taagtgttga ttaaagcctt gttatcacat tttgaaagct cattagtatc acaagttgga
     3121 gtgaattttt taaattcact tggatagcgt ttataataag ttggcccatg agaaccttgc
     3181 aaatgaagaa ctattatatt ttgatcactt aaatgattta atttttcttt aaaaggagcg
     3241 agtaaatttt catccaaatc actagaaagc ttttgcttat aagctaatct atcacaaacc
     3301 cctttacaac caccagaatt attatcaaac catgcagtat ctacacctgt tttataaagc
     3361 acatccatcg cattttcttg aaattctgaa cttgaataat tttcacgctt agaaatagaa
     3421 aacatacaag gtaaacttac cgctgttgct gttccacatg atgaaaaatt atcaaaaaag
     3481 actacattat cttttttggt ataaaaattg gtatcatttt tagtatatcc acccaaagag
     3541 taatttgccg ctctagcggt ttcacccacc accaaaacca aaagtttttt agtgtgattg
     3601 ttttctctat aagcatcatt agctatagtt ttaaattctg gcttagcttt tacaaaacga
     3661 atataatagc gatatacggc ataaatttga taaaaaggag tattatacat tcttatttca
     3721 ttatagtttc taaaaaaagg caagaaagtt ttacttaaag ggattaaaac cgcacaaaca
     3781 acaatcaaac ctgatattat attgataatt ttaattttta gatgggattt aaaactatca
     3841 taataatcaa tttttacttt aacaacataa aaaaccaata ataaagccaa aacaataaat
     3901 aagatcaatt ttaaatttaa caaatctttt acttctttaa tgtctgtttg aacaacattt
     3961 tgtatcatat cagaatctat aagcacccca taaaaactaa taaagtaaac acttaaaaaa
     4021 gatgatatta taaataatat agaaaaaaat ttagtaaaaa actttataaa aagcaaagag
     4081 caaatcacgt gaacaagtgc aaaataggcc acaataaaaa caaaagttat aaaccagttt
     4141 tgtgtatttt t
//
LOCUS       DAZAND010000117         4040 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.118, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000117 DAZAND010000000
VERSION     DAZAND010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4040
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.118"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            23..896
                     /locus_tag="ACHDOB_001633"
                     /pseudo
     CDS             23..896
                     /locus_tag="ACHDOB_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FIST N-terminal domain-containing protein"
     gene            872..1024
                     /locus_tag="ACHDOB_001634"
     CDS             872..1024
                     /locus_tag="ACHDOB_001634"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HFN3326538.1"
                     /translation="MQEYTFALKIGEDYLISPMEINPDKTLFSYCDIESAQELSLLKK
                     QILLKP"
     gene            1207..1998
                     /locus_tag="ACHDOB_001635"
     CDS             1207..1998
                     /locus_tag="ACHDOB_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN3326539.1"
                     /translation="MAIFFYEVENFNDFKPRYLKTFIQKYSDFKYYYLNIRAQKLEMT
                     NEINKIILNQLKQNTSEIDKNTSIFKEIFEELENIRRSLTTISESFTNFTNYLEYNLY
                     QSEEKMNLEKEVQSSLKNIDQLNSILDLISGIAEQTSLLSLNAGIDAARAGKLGRGFA
                     VIADEVRKLSENTQMGLGEMEGAIKLVIQTIQSIAKSSNSSTQEMNFIRDKSNEFSKI
                     ISNLINSGKEISDKLKQRSNVGEDFEKNVNQLKCYEDVLAKLNQY"
     gene            complement(2052..2405)
                     /gene="rplT"
                     /locus_tag="ACHDOB_001636"
     CDS             complement(2052..2405)
                     /gene="rplT"
                     /locus_tag="ACHDOB_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HFN3326540.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     SAAFAKIAEAAKKAL"
     gene            complement(2499..2690)
                     /gene="rpmI"
                     /locus_tag="ACHDOB_001637"
     CDS             complement(2499..2690)
                     /gene="rpmI"
                     /locus_tag="ACHDOB_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HFN3326541.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            2845..4011
                     /locus_tag="ACHDOB_001638"
     CDS             2845..4011
                     /locus_tag="ACHDOB_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326542.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQEGNENSLEQ
                     LSYIFNNTTYASEFGFRINEEGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNIANLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYVNGVDKKTSTQDKLSVFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDRRQKQANINKILNSYMSVMV"
BASE COUNT         1598 a          568 c          533 g         1341 t
ORIGIN      
        1 taattttaac ggagtttaat caatgttttt taattttaaa aataaaagct cagcgcaaaa
       61 agaagagagt aaaaaagttt tagaagctct atttcttcaa gaaaatgaac ttgaagaaaa
      121 attaaaaaaa ataaatatca agccaaaatt aatcataggc tttgcgtcgt atcaacttaa
      181 cctagcaatc ataggaaata agattcaaaa ttctataaat gaacaatgtg atatcatctt
      241 aagcaatgct actgatttat tgtgcaatct tgattctaac tcaaacattg aaaacagtcc
      301 ttataaacaa aatatccaag gaataagctt gatgcttttt agcgaagata tgatagaaaa
      361 tctctgcaca aataaaatca agctttttag caatataaaa gattatacag aaagaaaaaa
      421 actgatagaa aaagaagttt tatctataaa tatacctttt gaagcacact gcacaaatac
      481 tttgcattat ttaatttatg atggtttaag tcaaagcgaa agttctcttt tagaactttt
      541 atacaaacac aacccctatc cttgtgcttt agtaggaggt ggatctagtg gaaatatgga
      601 ctttagcgga acatttatat tttataacgg agaaatatta aaaaatcaag ctttaagcat
      661 acatgtccaa tttaaatcta aatatcgttt tgatttaatg aaatctcaaa attttaatcc
      721 tcaaagcaac attaccttta ccatacttga tgcaagctta tatgatagga cggtacgtga
      781 atttattgat aaaaaaacct ttcaatccat caacgcggtt gaagctttat gcaattattt
      841 taactgtact tttgaagaac ttaaaaataa aatgcaagaa tatacttttg ctttaaaaat
      901 tggagaagac tatcttattt cccctatgga aatcaaccca gataaaacat tatttagtta
      961 ttgtgatata gaaagcgctc aagaattaag cttgcttaaa aaacaaattt tattgaagcc
     1021 ataaaaaaag attacgaaaa attttctctt aataaaccaa aaccactagg agcaattttt
     1081 aatgattgta tcttaagaag acttcaaaac aaagaacatt taaatcaaat ccattttaat
     1141 gattttccta tagttggttt ttctagtttt ggggaaattt atggagtggg aattgcaaaa
     1201 agtttagtgg caatattttt ttatgaagtt gaaaatttta atgatttcaa acctagatat
     1261 ttaaaaactt tcatacaaaa atacagcgat tttaaatact attatcttaa tataagagct
     1321 caaaaactag aaatgacaaa tgagattaat aaaataattt taaatcaact caaacaaaat
     1381 acatcagaaa ttgataaaaa tacaagtata tttaaagaaa tttttgaaga acttgaaaat
     1441 ataagaagaa gtcttacaac cattagtgaa agttttacca atttcactaa ctacctagaa
     1501 tacaaccttt accaaagtga agaaaaaatg aatttagaaa aagaagtgca atcttctttg
     1561 aaaaatatag atcaattaaa tagtatttta gatcttattt cagggattgc tgaacaaact
     1621 agccttttat ctttaaatgc aggtatagat gctgctagag ctggaaaact tggtcgtgga
     1681 tttgcagtta tagctgatga agttagaaaa ctttcagaaa atacccaaat gggtctaggt
     1741 gaaatggaag gagctattaa attagttatt cagaccatac aatccattgc aaaaagttcc
     1801 aattctagta ctcaagaaat gaattttata agggataaat ccaatgaatt ttccaaaatc
     1861 atttcaaatc ttataaattc aggtaaagaa atttcagata aattaaaaca aagaagcaat
     1921 gtcggcgaag attttgaaaa aaatgtaaat caactcaaat gttatgaaga tgttctagct
     1981 aaattaaatc aatactaaaa aattaagaat ttcaagaaat caaaaatctt gaaattctta
     2041 cactaaaaaa attaaagtgc tttttttgcg gcctctgcaa tttttgcaaa agcagcagaa
     2101 tcattcatag ctaaatctgc tagaattttt ctatcaagtt caatacctgc ttttttaaga
     2161 ccattgataa atcttgaata acttaaatca ttaagcctac aagcagcatt gatacgcaca
     2221 atccaaagac gacggaagtc tctttttttg cggcgtctat cacgataagc atagactaga
     2281 cttctttcta attgttcttt tgcttttcta aaatgtttgc ggcgtccact ataaaaacca
     2341 cgcgctaatt ttaaaacttt tttatgtctg cggcgtctaa caacacctgt ttttactctt
     2401 gccattttta tttcctttca taaagtggcg tccaaatttg gagcttgccc ttgaaatttt
     2461 atctcagagg ggagtttgaa tgacttttag tcaaaaactt aaattcctag cattttttca
     2521 acagctttta catttgtgct atgcacatat ttagctgtgc gaagatcacg cattcttttt
     2581 gcaggttttt tagtcaaaat atgacttcta aaagctgagc ctcttttgat tttattttta
     2641 cctactttga agcgtttaac tgcgctttta acgcttttca tctttggcat acgctttcct
     2701 tatttagata aatttttatt tttcaaatta aaagaaaagc taaatactat caaatttttt
     2761 ctaatttttg actgaattta atttttaaaa aacttggcac accttttgct tataaaaaat
     2821 agcaatattt tggaaagatt taaaatgact ataaattcgg caaatccata tcaaaattta
     2881 accttatcta atcctttgca gaatagctct gctctaaatt tgattaaaga tagcaaagct
     2941 ttggatcaag aaggaaatga aaatagctta gaacaattaa gttatatttt taataatacc
     3001 acttatgcta gtgaatttgg atttagaatc aatgaagaag gtttttttga taaagattta
     3061 aataaaattg caaatatacc agaatcttat gatatcaaca ttaaaagtgt tagaagcata
     3121 gcaaaagaac tcgcaaaaca agatgaaaat ttaaactaca ataaaattga tctaccttat
     3181 cttttaaata gctatcatag ttcattaaaa tctataaatt cagaattttt acaagatgat
     3241 aatgcttatt taagtcgcga tcttatttca aaactatcat caggtttttc aacagataat
     3301 ggagaatttt taggccaaat ttcaagaatt tacaacaatc aagaagaaat tgatttggca
     3361 ttaagcaata tcgcaaattt aaatacttta atgttggata ataaaataac taattttcat
     3421 tttgataaag ccatagaaaa tacttcttct aatgaaattt taaaacctta tttaactaaa
     3481 aatgcagaag tatcaaaatc tggtctttta atgaatttta tctaccatga tataaaaact
     3541 caaaacgaaa aagaatttaa cttttttatg aaacctgcca ctttagaact aagctctcat
     3601 caaaatttac aaaaaattct caagggtgaa acagatatag aagattacat caaaaaagaa
     3661 aatgaaaaaa agatgagttt tgatctttat ctttatgtta atggcgtaga taaaaaaaca
     3721 agcactcaag acaaactatc tgtatttttt caacaatata ttaactacca aaaagatatg
     3781 gatttaagag aatttgcaaa ttcaagttca atatttcaaa tttatatcga tcaaaatcgc
     3841 aatgattttg atgctcttaa aaaacaatat caaaaccaaa gtcaagatac gcaaagatta
     3901 gaagaagcaa atcaactacg ttctagctct atagaaaatt ttttagatcg tcgtcaaaaa
     3961 caagcaaata taaataaaat tttaaactct tatatgtctg tgatggttta aaataatttt
     4021 ttaaaaaata tataaattat
//
LOCUS       DAZAND010000118         4021 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.119, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000118 DAZAND010000000
VERSION     DAZAND010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4021
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.119"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..503)
                     /locus_tag="ACHDOB_001639"
     CDS             complement(<1..503)
                     /locus_tag="ACHDOB_001639"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326543.1"
                     /translation="MKDMRMQARGLILYKDFDSAIIGTSMLENTSAKEANKKLGGNWI
                     NLSLGGSTFALRAVILDYLFKHKDIKNIIYSLDIRALNELETPKDKNFISLYNDKTID
                     LFKLYLSSRFINCAIFFSKKEKCIGKDNLDTLTNWFLENKNHFGGIEYWSKEWWHDKN
                     FQNEILQA"
     gene            complement(651..2150)
                     /locus_tag="ACHDOB_001640"
     CDS             complement(651..2150)
                     /locus_tag="ACHDOB_001640"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family O-acyltransferase"
                     /protein_id="HFN3326544.1"
                     /translation="MLFSSFTFIFAFLPLTLVGFYILKALQYYTSAKIFLILASLFFY
                     AYFKIDYIFILTFSTLVNFFLANLILRKENNRAGYTLLYLGIIFNLCLLAIFKYTDFF
                     LENFNLFSKLAHLDFNIPLPHILLPLGISFFTFQQIAFLVDCYKKSNIEDLLENKKVD
                     FIDYCLFISFFPQLIAGPIVHHKEMMPQFHSLLNKEKALIDWKLIAKGLFIFSIGLFK
                     KVYIADSFASWANAGFTVVQNGNFLNIFEAWATSLSYTFQLYFDFSGYCDMAIGLALF
                     FGIALPVNFNSPYKALNIADFWRKWHITLGRFLKDYLYIPLGGNRFGKFINLRNLFIV
                     AFLSGVWHGAGWGFVIWGILHAIAMISHRIYSFWAKGKTFLNSKIYKIISWFITFNFI
                     NIAWIFFRSENLQGAINLLKSMFGVIWVELPLKFKAGLLFKKIGGNDTMVGFILVSFI
                     LCICFKNSINMLQDFKSSFKNSLIVMFLFYIALITLIATPYTEFIYFNF"
     gene            complement(2202..3152)
                     /gene="waaF"
                     /locus_tag="ACHDOB_001641"
     CDS             complement(2202..3152)
                     /gene="waaF"
                     /locus_tag="ACHDOB_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HFN3326545.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTAL
                     FREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP"
     gene            3211..>4021
                     /locus_tag="ACHDOB_001642"
     CDS             3211..>4021
                     /locus_tag="ACHDOB_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFN3326546.1"
                     /translation="MPQLSIIIPLFNSCDFILRALQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACEI
                     ALKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEFFNQKEFLEFLSKQRHFCWSVWAKC
                     FRKDMILKIFEKVKIDERLSYGEDVLFCYIYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILNQNYKDKKKSNEIIKRLSKEFLLDEFHQKLFEVLEREEKSLCMRAN"
BASE COUNT         1493 a          519 c          606 g         1403 t
ORIGIN      
        1 gcttgtaaaa tttcattttg aaaattttta tcatgccacc attctttact ccagtattca
       61 atacctccaa agtggttttt attttctaaa aaccaatttg ttaaagtatc taaattatct
      121 tttcctatac atttttcttt ttttgaaaaa aatatagcac aattaataaa acgacttgag
      181 agatataatt taaataaatc aatagtttta tcattgtaga gtgaaataaa gtttttgtct
      241 ttgggggttt caagttcatt taaagctctg atgtctaaag aataaataat gtttttaata
      301 tctttatgtt taaataaata atctaaaatt accgctctta atgcaaatgt gcttccacct
      361 aaagatagat ttatccaatt acctcctagt tttttgtttg cttctttagc agaggtattt
      421 tcaagcatag aagtgcctat tatggcagaa tcaaaatctt tgtacagaat gagtcctcta
      481 gcttgcattc tcatatcttt catgtaagtt tcttttctaa aatatggtgg atgaaagaac
      541 caaaaaggat cgcgaatata aagcaatgta aaaagaatta ttacgagagg caaaggacat
      601 aataaagaaa aaagaatgaa ttttttatta gaagcaaaca atatttttcc ttaaaaatta
      661 aaatagataa attcggtata tggtgtagca ataagagtaa ttaaagctat ataaaataaa
      721 aacattacaa taagggaatt tttaaagctc gacttaaaat cttgaagcat attaatgcta
      781 tttttaaaac aaatacatag tataaaggag actaaaataa aacctaccat tgtatcattt
      841 ccgcctattt ttttaaataa aagccctgct ttgaatttta acggcaattc cacccaaatt
      901 accccaaaca ttgattttaa gaggtttata gccccttgta aattttcgct tctaaagaaa
      961 atccaagcta tattgataaa attgaaagtg ataaaccaag atataatttt ataaattttc
     1021 gaatttaaaa aagttttgcc tttagcccaa aaactataaa ttctatggct tatcatagct
     1081 atagcgtgta aaattcccca tataacaaaa ccccatccgg ctccatgcca tactccgctt
     1141 aaaaaagcta cgataaaaag atttcgtaga ttgataaatt ttccaaagcg atttcctcca
     1201 agagggatgt ataaataatc ttttaaaaat cttcctaaag taatatgcca ttttcgccaa
     1261 aaatcagcta tatttaaagc tttatatgga gaattaaaat ttacaggtaa agctataccg
     1321 aaaaaaagag ctaatcctat agccatatca caatatccac tgaaatcaaa atagagttga
     1381 aaagtatacg aaaggcttgt tgcccaagcc tcaaaaatat ttaaaaaatt tccattttgc
     1441 acaactgtaa atcctgcatt tgcccaagaa gcaaaactat cagctatgta aactttttta
     1501 aaaagtccta tagaaaatat aaacaagccc tttgctatta atttccaatc gattaaagct
     1561 ttttctttat taagtaaaga atgaaattgc ggcatcattt ctttatgatg gactatagga
     1621 cctgcgataa gttgcggaaa aaaactgata aataagcaat aatctataaa atcaactttt
     1681 ttattttcta ataaatcctc aatattactt tttttataac agtccactaa aaatgcaatt
     1741 tgttgaaaag tgaaaaatga aattcctaaa ggtagtaaaa tatgtggtaa aggaatatta
     1801 aagtctaaat gagcaagttt ggaaaaaaga ttaaaatttt ccaaaaaaaa atctgtatat
     1861 ttaaagattg ctagtaagca aaggttgaag ataataccta gataaagtaa agtatatccc
     1921 gccctattat tttcttttct taagataagg tttgcaagaa aaaaatttac caaggttgaa
     1981 aaggttaaga tgaaaatata atcaatttta aaataggcat aaaaaaataa actagctaat
     2041 attaaaaata tttttgcact tgtataatat tgcaaagctt ttaatatgta aaagcctacc
     2101 aaagttaaag gcaagaaggc aaaaataaaa gtaaaagagc taaaaagcat aaacaacctt
     2161 ataaaatttt acaatagttt tttattctaa ctaaaatttt tttatggagt gcttaatttt
     2221 ttaatttctt ctatcacctt ttcaggcttt agatctttca tgcatttatg gtgctttaaa
     2281 ggacaggttt tttgcataca aggcatacaa gctagatcta aatgcactaa ttttgcgttt
     2341 tgattttgcc aaggtgaagt ttgagtaaat ttcgtagggc caaaaatagc cacggttttt
     2401 atcttataaa ccgtacttat gtgcatagga ccactgtcat ttgtgatgaa aagatcgcaa
     2461 aaagcgatat tttgacaaag ggttttgatg gtggttttat tgcaaagatt ttttactttt
     2521 atgttttgtt cttttaaaat ttgataaatt tcattacaaa gttcttgttc ggcttttcct
     2581 gcgccaaaga ttaaaatttc atgactttgg ctgaaattta aagccacttt agcaaaataa
     2641 ctcgcatccc atctttttgc acttccaaag cttgcgccag ggttgagtcc tagaattttt
     2701 ttaccatttt ttaagataag agggttttga aattttagct taaagggaag ctttaagtct
     2761 ttaaaatgag cttttatact aagtgagttt tctataaaat aaaggtattt taaaacttga
     2821 tgttcttctt tgtgcttgtt tttgtcaaaa aaatatcttt gttttgtttt gagaatatgc
     2881 aagataatct tagaagaaaa cgcagatcta aaagcaaagc taagatcgat tttaccaagt
     2941 tctttgcgta aagatagggc ttgtttgtag cgggtttgtt tattttctat gatgatttta
     3001 gaattaggaa attccctaaa aagtgctgtg gaaaccaaag agccataaag gataaattgg
     3061 gtatttttaa aatgttcttt tatagcgtat aaagcaggtg aagccatcac tgcatcgcct
     3121 agccaagtgg gaaggtgtat aaaaattttc ataaatttcc taaactttga tagaattgtt
     3181 tttattattt taacaaaatt taggaaaaat atgccacaac tttcgatcat aatcccgctt
     3241 tttaattctt gtgattttat tttaagggct ttacaaagtt gtataaatca gactttaaaa
     3301 gatattgaaa ttttgattat cgatgataaa agtaaagata atagtttaaa tatggtttta
     3361 gaatttgcta aaaaagatcc aaggataaaa atctttcaaa atgaagaaaa tttaggcact
     3421 tttgcaagta gaaatttggg agttttgcat tctagttctg attttataat gtttttagat
     3481 agtgatgatt ttttaacact tgatgcttgt gaaatagcac ttaaagagat gaaaaaaggt
     3541 tttgatttac tttgctttga tgcttttgta catagggtaa aaaccaagca attttatcgt
     3601 tttaaacaag atgagttttt taatcaaaaa gaatttttag aattcttaag caaacaaagg
     3661 catttttgct ggtcggtttg ggcgaagtgt tttagaaaag atatgatctt aaaaattttt
     3721 gaaaaagtta aaatcgatga gcgtttgagt tacggcgaag atgtgctttt ttgttatatt
     3781 tattttatgt tttgtgagaa aatagctgtt tttaaaactt gcatttatca ttatgaattt
     3841 aatccaaatg gaagatatga gaataaaaat aaagaaattt taaatcaaaa ttataaagat
     3901 aaaaagaaaa gtaatgaaat cataaaaaga ctctccaaag agtttttact tgatgaattt
     3961 catcagaaat tatttgaagt tttggagaga gaggaaaaga gtttatgtat gagagcaaat
     4021 a
//
LOCUS       DAZAND010000119         3972 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.120, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000119 DAZAND010000000
VERSION     DAZAND010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3972)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3972)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3972
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.120"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..645)
                     /locus_tag="ACHDOB_001643"
     CDS             complement(<1..645)
                     /locus_tag="ACHDOB_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HFN3326547.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLIGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQIDALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILNANKNPSFENEEQIYIK
                     LTDKNFTLNHIFSKENRYLIATLSNPFFIDVKKDLESNFKDLEENLNSIKNKLFK"
     gene            complement(645..2453)
                     /gene="typA"
                     /locus_tag="ACHDOB_001644"
     CDS             complement(645..2453)
                     /gene="typA"
                     /locus_tag="ACHDOB_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HFN3326548.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2588..2911
                     /locus_tag="ACHDOB_001645"
     CDS             2588..2911
                     /locus_tag="ACHDOB_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326549.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDKNEKMA
                     RISSELTEILENEENLEKILNAKNLEELLNILIALNEDKMIKVYEDSYLKEKFPNVMV
                     DKFLK"
     gene            2929..>3972
                     /locus_tag="ACHDOB_001646"
     CDS             2929..>3972
                     /locus_tag="ACHDOB_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HFN3326550.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSNTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSIDETNEFLPDHMKISQKEVVSEAMNRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSTQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDTKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDSLNKDNNLKDLNKESKDLNKDFNKELNKNQEK
                     NNLNQENIQDQNKN"
BASE COUNT         1397 a          648 c          568 g         1359 t
ORIGIN      
        1 tttaaatagt ttgtttttta tagaatttag attttcttct aaatctttga aattgctttc
       61 taaatctttt tttacatcta taaaaaaagg attgcttaaa gtagcgataa gataacgatt
      121 ttctttagaa aagatatgat ttaaagtgaa atttttatct gtaagtttga tataaatttg
      181 ttcttcgttt tcaaagctag gatttttgtt tgcatttaaa atttcgagta aaattccaca
      241 aaaaaagcgt ttgttttcgt ccaaaaactg aatatcataa attttaaaat ccttaaattc
      301 aaagcagttt tgacttttaa attctttcaa atcctttgta agtcctagtt ttaaaaagtc
      361 tttttgactt aaactttgct ttttaaattt cgccccaaaa cgacgcaaaa ataaatttaa
      421 agcatcaatt tgcaattctt tttgtgcgag ttttagtttt ttagctgtaa aacgaaagaa
      481 aaaaacacct acaaaaacag ctaaaattac tgcgattaag gcatctctta taaaaacaaa
      541 ggctaaaaag cctataagta aggcttcgat aatgcttagg aattttaaga ttcctaagcg
      601 tttaagtata taaagtctat tattttctaa gctttttaaa tccattaaga ttttgctttt
      661 tccattcttt ttctttgagt tgggtcaaga tagcgtttgc gaacacgcac atttacaggt
      721 gtaacttcta caagttcatc ttcttctatc cactctaaag ctctttcaag acttaatttt
      781 ctaggtggca caagcttgat tgcatcatcg cttccgcttg ctcttacatt ggtaagattc
      841 tttcctttga taggattaac atctaaatca tttggacgag agtgctcacc tataatcata
      901 ccagtataaa ctttagtttg aggctctatg aaaagcactc cacgctcttg aaggttaaac
      961 aaagaatacc ccaaagccac gccattttcc atagaaatta aagctccatt gttacgcttt
     1021 tcaaccgcgc cgctaaaagg acggaattct aaaaagctat gattcatcac gccttcgcct
     1081 ttagtatcgg ttaaaaattg gcttctaaaa cctataagtc cgcgtgctgg aatttcaaac
     1141 tcaagtcttg tttgtccatc tcctgttggt gccatggttt tcatttcagc ttttcttttg
     1201 ccaagttttt ctattactgc accgctaaat tcttcaggca catcgataac taaatgttca
     1261 aaaggttctg ttttaactcc atcttcaact tttacgataa cttcaggtct tcccatgcaa
     1321 aactcaaaac cttcacgacg catattttca gctaaaatag tgatttgaag ttcgccccta
     1381 ccgcttactt taaatttacc ttcgcctgtg ctttcgtatt tcatagcaat attagttttc
     1441 atttcagctt ctaaacgttc agcgatttta tttgaagtta catgttttcc ttcagttcct
     1501 gctaatggtc catcatttac agaaaatact atgcttaaag tcggctcttc aatgtgtaaa
     1561 ggatcaagtg gcataggatt gtttggatct acaacgctat cgccaacatc taaagcttca
     1621 aaacctgcta tagctacaat atctccactt cctgcttctt caatatccat tttttctaag
     1681 cccataaaac caatgagttt tgaaattcta ccatttactt tggtgccatc agcttttgca
     1741 agcattacgc tttgattttt cttaacaacc ccattgaaaa ttctagcaat gcctatttta
     1801 cctacgaaat tatcataccc taaagtgaaa acttgaagtt gtaaaggatt gtcatttgta
     1861 ccacttggcg ctggaacgcg ttcaagtatg gttttaaaaa gtggttccat attatcactt
     1921 tcatcgttta gatcaagctt agcataacca ttttttgctg cagcataaac tatagcaaag
     1981 tcaagttgct catcgtttgc atctagggct acaaaaagat caaaaatttc attgatcact
     2041 ctttcaggat cagcagctgg tttgtcgatt ttgttgatta caactatagg tttaagccct
     2101 aaagataaag cttttttaac cacgaattta gtttgcggca taacgccttc ttgagcatcc
     2161 actaaaagca aaactccatc aatcattttt aaaacgcgtt ctacttctcc gccaaaatca
     2221 gcatgccctg gagtatctat gatgttgatt tttgtacctt tgtaattgat cgctgtgttt
     2281 tttgaaagta tggtaatacc gcgttctttt tctatatcgt tgctatccat aacgcgttct
     2341 gaaatttgtt ctctttcgct aaaggtgcct gattgtttta acaattcatc taccatagtg
     2401 gttttaccat ggtcaacgtg agctataact gctatatttc taatgttttc caaattttct
     2461 tctccaaagc taaattttta aaagcttaga ttatacaaaa atttaactta aactacaaag
     2521 catcaaaact tggaacactt cttgctttaa agacttgtga aattaaaatt ttaaaaagga
     2581 agttaaaatg tcaaaaccat taaatgaaga gatttttatt gaatttaaaa gcgatttagc
     2641 tgagagaaaa aatgaagttt tacttcaagt tttagaactt ttagaaactt ttagatcaga
     2701 taaaaatgaa aaaatggcaa gaatttcaag tgagcttaca gaaattttag aaaatgaaga
     2761 aaatttagaa aaaattttaa atgctaaaaa tttagaagag cttttaaata ttttaattgc
     2821 tttaaatgaa gataagatga ttaaagtata tgaagattct tatttgaaag aaaaatttcc
     2881 taatgtaatg gtagataaat ttttaaaata attttttttg aaggaaaagt gatgtcaaat
     2941 ttagctccgc aaaatgatgt tttaaatctt acgccgagta aaacttctaa tactagtagt
     3001 tcctttagta aaacgagtaa aaataaagaa catgaaagta gcgatagtaa aaattcaact
     3061 caagatgata cggaaagttt tttaaattct ttgcttaatt ctattgatga aaccaatgaa
     3121 tttttacctg atcatatgaa gatcagtcaa aaagaagttg ttagtgaagc gatgaacaga
     3181 cttcaaaaag gagcttttga tgagagtgat aagataagca ttttcgaatc tgcttctttt
     3241 atgcaaattc tttctttgtt ggataagcta aaaacagata cagcagatgt taaactagca
     3301 aatctttcta ctcaactttc aagtcttatt aaaacagagg ctaattttaa tgctttaaaa
     3361 ggtgcatcaa atcttagtga gcttttggac atagctaaag atctgggctt aaatgtaaaa
     3421 aatattaaag tagatcgtct tcttgatctt aaagcaactt ttccaaattt agataaggct
     3481 gattttttta agggtgctgt ggataatgtt tttaaagaaa tcatcaataa taaaatttcc
     3541 aatgtgagta aaaatttaaa tcacaattta gaaaatacaa ctcatactac aagcactcat
     3601 tctacgcaaa aaacaaattc taaagatagc ggttctttgc tttctcaaac tttaaaaaat
     3661 ttagattcca tactttcatc caaagaaagc aaacacgaaa aaaacgataa agttaaatca
     3721 aaaatagaag aagataccac agatactaaa aatactttaa aaaatatcaa aaatgatgag
     3781 tttgcaaaaa atttaacaga agagttaaat ataaaagata aaaaaaacca agatagttta
     3841 aataaagata acaatcttaa agatttaaat aaagaaagca aagacttaaa caaagatttt
     3901 aataaagagt taaataaaaa tcaagaaaaa aacaatttaa atcaagaaaa tatacaagat
     3961 caaaataaaa at
//
LOCUS       DAZAND010000120         3859 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.121, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000120 DAZAND010000000
VERSION     DAZAND010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3859)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3859)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3859
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.121"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            18..578
                     /gene="gmhB"
                     /locus_tag="ACHDOB_001647"
     CDS             18..578
                     /gene="gmhB"
                     /locus_tag="ACHDOB_001647"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HFN3326551.1"
                     /translation="MFIFFLKKLYYNVFMKTKALFLDRDGVINIDKKYVYKIEDFEFC
                     DGIFELCRYFLARNYLLFVATNQSGIARRYYKESDFLKLCDYMLKEFAKQDVKIDKIY
                     HCPHLEGCECRKPKAGMLLKAKDEFDLDMKNSIFIGDNLSDMQAGLNANIGTLILVNE
                     EKKEGDFFRQFKNLKEILSFFKEKDI"
     gene            579..1532
                     /gene="rfaD"
                     /locus_tag="ACHDOB_001648"
     CDS             579..1532
                     /gene="rfaD"
                     /locus_tag="ACHDOB_001648"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008712 - ADP-glyceromanno-heptose
                     6-epimerase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HFN3326552.1"
                     /translation="MKIAITGGAGFMGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIKDFRPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEKPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPCLFEGSDQIYRDFT
                     YIKDVISANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYRPKFTLEEGIKDYLGEIKRLFEKEVNA"
     gene            1525..2910
                     /gene="rfaE1"
                     /locus_tag="ACHDOB_001649"
     CDS             1525..2910
                     /gene="rfaE1"
                     /locus_tag="ACHDOB_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HFN3326553.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDKSGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISAILLENELIALFDEKIKDFKAVVLSDYAKGVLTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFKNLEGENLEKGIKKLKE
                     DFALRYSIITLSEAGIALFDEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLASGIEIF
                     KACELANEAAAVVVSKIGSMSVSFDEIKSFNRVDFEKKIKSKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILIKGADYKDKLVVGADIVSKVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            2907..3467
                     /gene="gmhA"
                     /locus_tag="ACHDOB_001650"
     CDS             2907..3467
                     /gene="gmhA"
                     /locus_tag="ACHDOB_001650"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008968 - D-sedoheptulose 7-phosphate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HFN3326554.1"
                     /translation="MINLVEKEWQEHQKIAQESEILKGQIAKAGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSPNVLEAFKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDEGF"
     gene            complement(3471..>3859)
                     /locus_tag="ACHDOB_001651"
     CDS             complement(3471..>3859)
                     /locus_tag="ACHDOB_001651"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326555.1"
                     /translation="QKTQFYLIIPSYSRLNYRKLSYGEYYNKDSVLFSNYYAILSWII
                     QETQKYPNVKIYGFDDLDYADNIKNYKDPAHYNTDMNSMQLNAIRDNTHILNTQNIVK
                     YLNTMERKIKEFDLTPFVEYIKNQNF"
BASE COUNT         1357 a          450 c          769 g         1283 t
ORIGIN      
        1 ttaagaaatt aaagataatg tttattttct ttttaaaaaa gctatattat aatgttttta
       61 tgaaaacaaa agcattattt ttagatagag acggtgtgat taatatagat aaaaaatatg
      121 tctataaaat agaagatttc gaattttgtg atggaatttt tgaactttgt agatattttt
      181 tagctagaaa ttatttgctt tttgtagcga caaatcaatc aggtattgca agaagatatt
      241 acaaggaaag tgatttttta aagctttgtg attatatgct taaagaattt gccaagcaag
      301 atgtaaaaat tgataaaatt tatcattgtc cgcatttaga aggttgtgag tgtcgcaaac
      361 ctaaagcagg tatgctttta aaagcaaaag atgagtttga tttggatatg aaaaattcta
      421 tctttatcgg agataatcta agcgatatgc aagcagggtt aaatgctaat attggcactt
      481 tgattttagt aaatgaagaa aaaaaagaag gcgatttttt tagacaattt aaaaatttaa
      541 aagaaatttt gagctttttt aaagaaaagg acatttaaat gaaaatagca atcacaggtg
      601 gcgcaggatt tatgggttcg caactagctt taaatttgca agaaaaacat gaaattttaa
      661 tcatcgataa aatgcgtagt agtgcgactt ttgaaaatgg aaatttgcaa agttttgggc
      721 attttaaaaa tttgcttgaa tttgacggag aactttttgc aggcgatatt aatgatgaaa
      781 aagttttaaa aaagattaag gattttagac ctgaaattat ttttcatcaa gcagcaattt
      841 cagacactac ggtttttgat caaactaagg ttttacaaac caatttaaat acttttaaag
      901 attttataga acttagcata gatcttaatg caaagcttat ttatgcaagt tcagcttcag
      961 tttatggcga tgcaaaaagt ccgcaaaccg taggtaaaga tgaaaaacca aaaaatcctt
     1021 atgctttttc aaaattgatg atggataaac tagcgaaaaa atactacgat aaagcccatt
     1081 tggtaggact tagatatttt aatgtttatg gaaaaggcga attttataaa aacaaaaccg
     1141 cttctatggt tttgcaattt ggccatcaaa ttttagcagg aaaaaatcca tgcttgtttg
     1201 aaggaagtga tcaaatttat agagatttta cttatattaa agatgttatt agtgccaatt
     1261 taatcgccct tgattcaaaa tgcggggttt ataatgtagg cagtggtaaa gcaagaactt
     1321 ttcaagatat agttgatatt ttgcaaaaag agttaaagac tgatttgcct tgcgaatata
     1381 tcccaaatcc ttatgtaaaa tcttatcaat ttcataccga ggcaaaacta gatcaaactt
     1441 gggattatcg gccaaaattc actttagaag agggtataaa agattattta ggcgagataa
     1501 aaagactttt tgaaaaggaa gtaaatgctt gagtttttaa gtcagcaaaa acctaaaatt
     1561 ttaattatag gggattttat ggtggataat tacacttggt gtgattgttc gcgtatcagt
     1621 cctgaagccc ctgttttggt agctaaaacc cttaaagaag ataaaagatt aggcggggct
     1681 gcgaatgttt atgcaaattt aaaaagcttg ggagctgatg tttttgcgct cggtgttgtg
     1741 ggtgatgata agagtgggaa atttttacaa gaaaatttaa aaggagaatt tttgatccaa
     1801 aaaggacgca aaaccccttt taaaaatcgc attatggcac acaatcagca ggttttaaga
     1861 ctagatgaag aagacataag tgcaattttg cttgaaaatg aacttattgc tttgtttgat
     1921 gaaaagatta aagactttaa ggctgtggtt ttaagcgatt atgccaaagg tgttttaacc
     1981 cctaaagttt gtaaggctgt gataaaaaaa gctaaggctt taaatattcc tgttttagtt
     2041 gatcctaaag gcagtgattt tagtaaatat agcggtgcaa ccttactcac gcctaataaa
     2101 aaagaagctt tagaggcttt gaaatttaaa aatttagagg gtgaaaattt agaaaaaggg
     2161 attaaaaaat taaaagaaga ttttgctttg cgttattcta tcatcactct ttcagaagcg
     2221 gggatcgcac tttttgatga gggtttaaaa attgcacctg ctaaagcttt agaagtttat
     2281 gatgtaacag gggcgggcga tagtgtgatc gcagttttgg ctttttgttt ggcaagtggg
     2341 attgaaattt ttaaagcttg cgaacttgcc aatgaagccg cagctgttgt agtgagtaaa
     2401 ataggtagca tgagtgtgag ttttgatgag attaagagtt ttaatcgtgt ggattttgag
     2461 aaaaaaatta aaagcaaaga agaactttta acgcttttaa aacaaaatga taaaaagatc
     2521 gtttttacaa atggttgttt tgatatcgtg cattttggac atataaaata ccttgagaaa
     2581 gctaaaagat tgggcgatgt tttgattgtg ggcttaaact cagatgcgag tgtgaaaaga
     2641 ctcaaaggcg agagtcgtcc tgtaaattca gagtttcaaa gagcttgtat gttggcagct
     2701 ttttattttg tagattttgt agtgattttt gatgaagaca cacctttaga acttataagc
     2761 tttttaaaac ccgatatttt gattaaagga gctgattata aagataagct tgttgtgggt
     2821 gcagatatcg tttcaaaggt tgaattaatc gactttgaag aaggatttag tacgagtaag
     2881 atcatagaaa agattaagga taaaaaatga taaatttagt ggaaaaagaa tggcaagagc
     2941 atcaaaaaat cgctcaagaa agtgaaattt taaaaggaca aatcgctaaa gcaggagagc
     3001 ttttgtgcga gtgtcttaaa aaaggtggca agattttgat ttgtggaaac ggtggaagtg
     3061 cggctgatgc acagcatttt gcagctgaac ttagtgggcg ttataaaaaa gaacgcaagg
     3121 ctttggcagg tatagcgctt acaaccgata cttcagcact tagtgctata ggaaatgact
     3181 atggttttga gtttgttttt tcaagacaag tggaagcttt aggaaatgaa aatgatgttt
     3241 taatcggtat ttcaacgagc ggaaaaagcc ctaatgtttt agaagctttt aaaaaagcaa
     3301 aagaacttaa tatgctttgt ttagggctta gtggaaaggg tggtggaatg atgaataagc
     3361 tttgtgacca taatcttgtt gtaccaagcg atgatacagc tagaattcaa gaaatgcaca
     3421 ttttaatcat acacacactt tgccagatta tagatgaagg tttttaattt tcaaaaattt
     3481 tgatttttta tatactctac aaatggtgtt aagtcaaatt ctttaatttt cctttccatt
     3541 gtattaagat atttaactat attttgggta tttaaaatat gcgtattatc tcttatggca
     3601 ttaagttgca tagagttcat atcagtattg tagtgtgcag gatctttata attttttatg
     3661 ttgtcagcgt agtccaaatc atcaaatcca tatattttta cattaggata tttttgagtt
     3721 tcttgtataa tccaacttaa aatagcataa tagtttgaaa atagaacact atctttatta
     3781 taatattccc cataactgag ttttctatag tttaatcttg aataacttgg tataataaga
     3841 taaaactgcg ttttttgat
//
LOCUS       DAZAND010000121         3801 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.122, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000121 DAZAND010000000
VERSION     DAZAND010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3801)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3801)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3801
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.122"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            127..321
                     /locus_tag="ACHDOB_001652"
     CDS             127..321
                     /locus_tag="ACHDOB_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HFN3326556.1"
                     /translation="MMSFEEIAKELNLSVTRVHQIYTEALRKLKSPKNKDKWMAIFET
                     IDLIKKEKVKKENLIQGEKK"
     gene            318..503
                     /locus_tag="ACHDOB_001653"
     CDS             318..503
                     /locus_tag="ACHDOB_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326557.1"
                     /translation="MIPMIKGEKADYSASLFEIKGVSIIYKESGVFVDVLKGIYPDYI
                     AKKIIRFHLGKKLNKSA"
     gene            559..990
                     /locus_tag="ACHDOB_001654"
     CDS             559..990
                     /locus_tag="ACHDOB_001654"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SA1788 family PVL leukocidin-associated protein"
                     /protein_id="HFN3326558.1"
                     /translation="MQLSYYCFKDRKKRKMPLDTPLNTKNFKLKDKLGLNIKEQIEIC
                     NKYGITHKLYVKRKEKGWSLKEILETPKGDKRFKYIIIDDIRRNKQAVSLNSHSKFGR
                     NVLHLGNMSKKANLHFKYSKLDHLALQNNLYQDKNGVIKAY"
     gene            1064..1402
                     /locus_tag="ACHDOB_001655"
     CDS             1064..1402
                     /locus_tag="ACHDOB_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4406 domain-containing protein"
                     /protein_id="HFN3326559.1"
                     /translation="MAIVYIASPYKALAVRESQRKAQAISVAQQECLKIMRECEGFTP
                     VSPILQFSYLDENKHRDKALQMGLELLKASDYIYMSNHKDAKYSKGMQEELALAKKLG
                     IKELVLELPL"
     gene            1598..2083
                     /locus_tag="ACHDOB_001656"
     CDS             1598..2083
                     /locus_tag="ACHDOB_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HFN3326560.1"
                     /translation="MQINSFEDVNLALKKVAELSVKIEKINGEVTLACNEIKEARAGE
                     IKVLSDELKYIEQCITTFCENNKHEFAEKRSKEFTFGKIGYRLSKSVSLPRVKEKLEN
                     LIKAFKSYNLNECIIYKEELNKDAIVELDDTTLVKLGLKRVVKDNFRIEPKIESLEIQ
                     N"
     gene            2155..2427
                     /locus_tag="ACHDOB_001657"
     CDS             2155..2427
                     /locus_tag="ACHDOB_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326561.1"
                     /translation="MYVNVSIDASDLEDFYAHDLAELFEDLSTKEQEEFFGIIHKDIK
                     PLERIRAILSNLSNDEVLKLLKELNNEFKSDEEWQKTIKSINGDNK"
     gene            2424..2855
                     /locus_tag="ACHDOB_001658"
     CDS             2424..2855
                     /locus_tag="ACHDOB_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326562.1"
                     /translation="MKSVKINNTYILAETIKSFRIFQDENFVVLEIFNGEQYTQCFEI
                     FQSKEVEYHYLFGVKQNSKTIKILNDIDISMQKLCGVIGNNLLETLAFLESRKKEDIV
                     FRLDNEITQILEKSELVENINKLVKEYENEQSNKGFFKKFF"
     gene            2866..3246
                     /locus_tag="ACHDOB_001659"
     CDS             2866..3246
                     /locus_tag="ACHDOB_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YopX family protein"
                     /protein_id="HFN3326563.1"
                     /translation="MKLQDFDFRIWNNETERYETNKCLISLLMIDVLTRVAHLNGNKF
                     EIELWTGIYDKNGKKIYEGDIVKTKSPYDCFLAKVGIHKEGTFYLESKSRDYIGSLIY
                     LVKDEGYDTEIIGNIHENPELLKC"
     gene            3357..3536
                     /locus_tag="ACHDOB_001660"
     CDS             3357..3536
                     /locus_tag="ACHDOB_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009650615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326564.1"
                     /translation="MSKRNGALRAFKTLLKDVLNDENGFYKHKNGKLNVAKLARVSGL
                     SRNFLKRELYIRGLL"
     gene            3533..>3801
                     /locus_tag="ACHDOB_001661"
     CDS             3533..>3801
                     /locus_tag="ACHDOB_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326565.1"
                     /translation="MSPKQAMLRKQLLVKIHMHKEYLYYKENNAWQDFLALRFEVLSS
                     KDLSIDELKILLDIFDGKIKDDINFVPDFKGRLMLKKASSNKQFF"
BASE COUNT         1566 a          414 c          667 g         1154 t
ORIGIN      
        1 ttttaaattt agcaatggta attttagaag ctctgcaaag cttttaaaaa aggccttaag
       61 acttgcagaa cttgaagagt gcgaaataaa tgatgagtta ttaactagtg caagcgagat
      121 ggttatatta tgagttttga agagatagct aaagaactta atcttagcgt gacacgcgtt
      181 catcaaatct atactgaagc tcttagaaaa ttaaagagtc ctaaaaataa agacaagtgg
      241 atggctatct ttgaaacgat tgacttaatc aaaaaagaaa aagtaaagaa agaaaactta
      301 atacaaggag agaaaaaatg ataccaatga ttaaaggtga gaaagctgat tatagtgctt
      361 cgctttttga gataaagggt gtaagcatta tttataaaga aagtggagtg tttgtagatg
      421 ttttaaaagg aatttatcct gattatattg caaaaaaaat cattcgtttt catttgggta
      481 aaaagcttaa caaaagtgct taaattaaag cactttgatt aagtttttta aaacttaaat
      541 ttatttagaa agggaaaaat gcagttaagt tattattgtt ttaaagatag aaaaaaaaga
      601 aaaatgcctt tagatacacc attaaatact aaaaatttta aacttaaaga taagcttggt
      661 ttaaacataa aagaacaaat agaaatttgt aataaatatg ggattaccca caagctttat
      721 gtgaaaagaa aagaaaaagg ttggagctta aaagaaattt tagaaactcc aaaaggagac
      781 aagcgtttta aatatattat tatcgatgat atcagaagaa acaaacaagc agttagccta
      841 aacagtcata gtaaatttgg tagaaatgtt ttacatttag gaaatatgag caaaaaagct
      901 aacttgcatt ttaaatattc aaaacttgat catctagcct tgcaaaataa tttataccaa
      961 gataaaaatg gagtaattaa ggcgtattag aaaatttaac aaatctacta aggtggattt
     1021 gattaagttt tttaaaactt aaatttatta gaaaggaaaa ttcatggcaa tagtttatat
     1081 cgcttctcct tacaaagctt tagctgtaag agaaagtcaa agaaaagcac aagctattag
     1141 tgtagcccag caagaatgct taaaaattat gcgtgaatgt gaaggcttta cacctgtttc
     1201 acccatacta caatttagct atttggatga aaacaaacac agagacaaag ctttacaaat
     1261 gggattagag cttttaaaag caagtgatta tatttatatg agcaatcata aagatgctaa
     1321 gtattctaag ggaatgcaag aagaattagc attagctaaa aagcttggca ttaaagagct
     1381 agttttggag ttgcctcttt gacttcgcaa tgtggcaaag ccaccttttg cgataaagag
     1441 ctacactccc ttaacccacc tgaaggctcc gcgacactgc gtgaaaaaaa aggtttaagg
     1501 atagttaaga aaagagctaa acacgcagtg cttttaagat atggcgtaat tctttgggat
     1561 tatcaaatta ataaatttaa tttaaaagga gatttaaatg caaataaata gttttgaaga
     1621 tgtaaatctt gcacttaaaa aagtggcaga gcttagtgta aaaatagaaa agattaatgg
     1681 agaagtaact ttagcttgca atgagattaa agaagctcgt gcaggagaga ttaaggtttt
     1741 aagtgatgaa cttaaataca tagagcaatg tatcaccact ttttgtgaaa ataacaagca
     1801 tgaatttgca gaaaaaagaa gcaaagaatt tacctttggc aagattggct atcgcttaag
     1861 taaaagtgta tctttaccaa gagtgaaaga aaaactagaa aacttaatca aagcctttaa
     1921 aagttacaac cttaatgaat gcatcattta caaagaagaa cttaataaag atgccattgt
     1981 agagcttgat gatactactt tagtaaagct tggacttaaa agagttgtaa aggataattt
     2041 tagaatagag ccaaagattg aaagcttaga aattcaaaat taagaattta acaagtccgc
     2101 taaggcggat ttgattaagt ttttaaaact taatttaaaa caaaaggata aaaaatgtat
     2161 gtcaatgtaa gcatagatgc gagtgattta gaagattttt acgctcatga tttggctgaa
     2221 ctttttgaag atttaagcac aaaagagcaa gaggaattct ttggaattat ccataaggat
     2281 atcaagccat tagaaagaat aagagctatt ctttctaatt tgtctaatga tgaagtactt
     2341 aaacttttaa aagaacttaa taatgagttt aaaagcgatg aggaatggca aaaaactata
     2401 aaaagcataa atggagataa caaatgaaat cagtcaaaat taataatact tatatcttag
     2461 cagaaacaat taagagtttt agaatatttc aagatgaaaa ttttgttgtt cttgagattt
     2521 ttaatggaga acaatatacg caatgttttg aaatatttca aagcaaagaa gttgaatacc
     2581 attatctttt tggtgtaaaa caaaattcaa aaactataaa aatacttaat gatatagata
     2641 tttcaatgca aaaactttgt ggggttatag gtaataattt acttgaaaca cttgcttttt
     2701 tagaaagtag aaaaaaagaa gacatagttt ttagattaga taatgaaatt acacaaattt
     2761 tagaaaaaag cgaattagtt gaaaatatta ataaacttgt aaaagaatat gaaaacgaac
     2821 aaagcaacaa aggctttttt aaaaagtttt tttaaaggat aaataatgaa actacaagat
     2881 tttgatttta ggatttggaa caacgaaact gagagatatg aaacaaataa gtgtcttatt
     2941 tctcttttaa tgattgatgt attaactaga gtggcgcatc ttaatggaaa taaatttgaa
     3001 atcgagctat ggactgggat ttatgataaa aatggcaaaa agatttatga aggggatatc
     3061 gttaaaacta aaagtccata cgattgcttt ttggcaaaag ttggcattca taaagaaggg
     3121 actttttatc ttgagagtaa aagtagagat tacataggct ctttaattta tttagttaaa
     3181 gatgaaggat atgataccga aatcatcggc aatatccacg agaatcctga acttttgaaa
     3241 tgttaaaaaa tattaaaaat tttaacataa aaatgaaata tgttaaaaaa gccaaaaaat
     3301 ttaacaaagt ccattgattt aatgggcttg attaagtttt agcaaggaaa gaaaagatga
     3361 gtaaaagaaa tggtgcttta agggctttta aaacgctttt aaaagatgtt ttaaatgatg
     3421 aaaatggttt ttataaacac aaaaatggca aattaaatgt tgctaaatta gctagagtta
     3481 gtgggcttag cagaaatttt ctaaaaagag aactttatat aagaggtttg ctatgagtcc
     3541 taaacaagca atgcttagaa aacaacttct agttaaaata cacatgcaca aagagtattt
     3601 atattataaa gaaaataatg cttggcaaga ttttttagct ttaagatttg aggttttaag
     3661 ctcaaaagat ttaagcatag atgagcttaa aatcttgctt gatatttttg atggtaaaat
     3721 taaagatgat ataaacttcg tacctgattt taagggtaga ttaatgctta aaaaagctag
     3781 ttctaataaa caattttttt a
//
LOCUS       DAZAND010000122         3638 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.124, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000122 DAZAND010000000
VERSION     DAZAND010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3638
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.124"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            212..1051
                     /locus_tag="ACHDOB_001662"
     CDS             212..1051
                     /locus_tag="ACHDOB_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFN3326566.1"
                     /translation="MKKILLSVLTAFVVVVLAACGGNSDSKTLNSLDKIKQNGVIRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPDIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMAIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            1092..2339
                     /locus_tag="ACHDOB_001663"
     CDS             1092..2339
                     /locus_tag="ACHDOB_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3326567.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFVKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICSIFSIAFIIFGMLFSFYDEKFLFYFLLACFTQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFVVNAFYKEYLGIYLAIVGSCS
                     LFCVFLLKRVFARSKIKELSIVF"
     gene            complement(2322..3590)
                     /locus_tag="ACHDOB_001664"
     CDS             complement(2322..3590)
                     /locus_tag="ACHDOB_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HFN3326568.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIRAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFKNLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLPFNTLRKKGKIYELYAQNFKGGHSGINIVRNEKSSIKEMAKFIQENKGEIISFEGG
                     ERINSIPKHAKALVHFKNEVKSNNWIKCDFKEEGEFEICDQSNKLLSLINSFTHGVRA
                     YDENLGIVQTSINLATLRMQDKQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRS
                     FNFYPPWEGKPNALSDMVFKALKKISPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
BASE COUNT         1096 a          523 c          621 g         1398 t
ORIGIN      
        1 tccttaaaaa ttttaaaaaa aagattatat ctttttttac ttaaaattta aacaatgcta
       61 aaagagggtg tgagattaat tacattttta cacataggaa aatcttttta gtttgtttca
      121 aatgcattat ttataatttt aagtataatt aactttgcaa ttattatata ttttgcaata
      181 gctttaagct tattttaaag aaaggaaatg tatgaaaaaa atacttctaa gtgttttaac
      241 ggcctttgtt gtagtagtat tggctgcttg tggaggaaat tctgactcta aaactttaaa
      301 ttctcttgat aagatcaagc aaaatggagt tattaggatt ggggtatttg gcgataaacc
      361 accttttggt tatgtggatg aaaaaggaaa caatcaaggc tatgatatag ctttagctaa
      421 acgcatagca aaagaacttt ttggcgatga aaataaggtg caatttgttc ttgttgaagc
      481 tgcaaatagg gttgagtttt taaaatcaaa taaagtagat attattttgg ctaattttac
      541 tcaaactccg caaagagccg agcaggttga tttttgcttg ccttatatga aggtagcttt
      601 aggcgtagct gtaccaaagg atagtaatat aactagcgta gaagatttaa aagataaaac
      661 cttgctttta aacaaaggca caacagcaga tgcgtatttt acgcaaaatt atcctgatat
      721 taaaacttta aaatacgatc aaaataccga aacttttgcc gctttgatgg ataaaagagg
      781 cgatgcttta agtcatgata ataccttgct ttttgcttgg gtgaaagatc atcctgattt
      841 taaaatggct atcaaagagt taggcaacaa agatgttatc gcaccagcag ttaaaaaagg
      901 cgataaagaa cttaaagaat ttatcgataa tttgatcatt aaactaggcc aagagcagtt
      961 ttttcacaag gcttatgatg aaactttaaa agctcatttt ggagatgatg ttaaggctga
     1021 tgatgtagtg attgaaggtg gaaaaattta acaaagggct ttttgccctt tatattgatt
     1081 taggataaaa tatgcaaaaa aaatacaaaa atattattta tgcttctttg ggtggaattt
     1141 tggaatttta tgattttgtg ctttttgcct tttttttgga tatttttgct aaggtattct
     1201 ttccgcaaaa tgatgctttt tggatgcaga taaatgctta tatagccttt ggtgctgctt
     1261 atttagcgcg tccttttggt tctattgtga tggcacattt tgctgataga tatggaagaa
     1321 agaatatttt ttatatttct atgcttttga tggttttgcc tagttttgct ttagcttttt
     1381 tgccaagtta tgaaagtata ggtatatttg ctactttgat tttatttact attcgtattt
     1441 tgcaaggttt agccgttgga actgaggtga gcggagcttg gatttatgtg agcgaatttg
     1501 tcaaagggcg tcaaattcct ttagctcttg gttttatttc agcgacttta accataggtt
     1561 tattgctagg aaatattgcc actttaggca taagatctta ttttacccca gaagaagttc
     1621 aaagctatgc ttggagaatt ccttttatca taggaggatt ttttggaatt ttagctttgt
     1681 ttttaagaaa taaactcagc gaaactccag aatttgtaaa agttcaaaat gaaaagaaaa
     1741 ttttaagttt tccattgttt gaagctttaa aaactcataa aatgagcatg cttgtttgtt
     1801 ttttaatgac catggtttta acaagcggtg tggcaacttt gatgattttg cctaagtatt
     1861 ttgaaagtct tttagctatg agtaaaactt ctgctttatg ggtacaaaat tttgctattt
     1921 tagcggtgat ttttggagct ttatttcaag gttttttagc aagcaaatgg ggaagctata
     1981 ggatttgttc tatttttagt atagctttta ttatctttgg tatgcttttt agtttttatg
     2041 atgagaaatt tttattttat tttttactgg cttgttttac acaaggtatt atcactttcg
     2101 cacctgtttt tatgacacaa atttttaaaa gcgaacttaa atttagtggg cttagttttg
     2161 cttataatat ttcttatgcg attttaggtt ttttaacccc ttttgtagtt aatgcttttt
     2221 ataaagagta tttaggtatt tatcttgcta tagtgggatc ttgctcctta ttttgcgtgt
     2281 ttttgttaaa acgcgttttt gcaagaagca agattaaaga attaagcatt gtcttttaaa
     2341 acttcaaaaa caaccttaga tattttttca actgaagcga tttcgcaatg ctcatcagtt
     2401 gaatgaggat tatggatatt tggacctata gaagcgcata aaagctcttg ttttttctct
     2461 ataatgccac actcaagccc tgcatggata gctgaaactt tggcattagg cgatattttt
     2521 ttaagcgctt taaaaaccat gtcgctaagt gcgtttggtt tgccttccca aggtggatag
     2581 aaattaaaac ttcttacttt aaaatcaaaa gccttgaaaa attctaaagt ttcaaattct
     2641 acttgcttaa gtccatcaag tatattagat cttgcaaaaa gtgcgaattt gatttgttta
     2701 tcttgcattc ttaaagtagc taggttaatg cttgtttgaa ctatacctag attttcatca
     2761 taagctctaa ctccatgagt aaaagaattt ataaggctta aaagtttgtt actttgatcg
     2821 caaatttcaa attcaccttc ttctttaaaa tcgcatttta tccagttatt gctctttact
     2881 tcatttttaa aatgcactaa agctttggcg tgtttaggta tagaattgat tctttctcca
     2941 ccttcaaaag aaatgatttc tcctttattt tcttgtatga atttagccat ttctttgatg
     3001 gagctttttt cgttgcgtac gatatttatg cctgagtgtc cacctttaaa attttgcgcg
     3061 taaagctcat aaattttacc cttttttcta agggtattaa aaggcaagct agcttctata
     3121 tctactccac ctgcacagcc tatcatgatc tcatcatcgc tttcatgatc taaatttaaa
     3181 agcattttag attctaaagt gtgctcgagt gaattcactc ccatgagtcc tacttcttca
     3241 tcgtttgtaa aaagacactc taaattttta aattcagcca tagcactcat catgatggct
     3301 atacctatac cattatccgc gccaagactt gaatttttgg ctcttaaaaa gccattttct
     3361 tcataaactt ctaagtttgg tgcatcgccc atacagacca tatcataatg gctttgtaag
     3421 caaatttttg gtttgccttt tatggcacgg atatttcctg ctttatctac actcacttta
     3481 aagcctttat ctttagcata agagcttaaa aattctttca tttgttctgt ttcataactg
     3541 caatgaggaa ttttacataa ttgtttaaaa ttttctataa cattttgcat tttatctcct
     3601 ttgttttgat aaaattatgg catatttttt aaaattta
//
LOCUS       DAZAND010000123         3567 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.125, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000123 DAZAND010000000
VERSION     DAZAND010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3567)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3567)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3567
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.125"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..160
                     /locus_tag="ACHDOB_001665"
     CDS             <1..160
                     /locus_tag="ACHDOB_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326569.1"
                     /translation="YEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLICIKNDVI
                     QFCENISF"
     gene            217..531
                     /gene="trxA"
                     /locus_tag="ACHDOB_001666"
     CDS             217..531
                     /gene="trxA"
                     /locus_tag="ACHDOB_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HFN3326570.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            665..1603
                     /gene="trxB"
                     /locus_tag="ACHDOB_001667"
     CDS             665..1603
                     /gene="trxB"
                     /locus_tag="ACHDOB_001667"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADPH) activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0019430 - removal of superoxide radicals
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HFN3326571.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWNEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKRAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIKLITSASVDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEAGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(1641..3422)
                     /locus_tag="ACHDOB_001668"
     CDS             complement(1641..3422)
                     /locus_tag="ACHDOB_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HFN3326572.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAAMLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDESKIIDMNAVKNAHLVFGDNDDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDVLYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGVAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSSDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNIDEANRFGWIVEINPFDVK
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGTLYVGQFNGKVGDFKGQGKWIALEYGKNGLDEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
BASE COUNT         1188 a          565 c          559 g         1255 t
ORIGIN      
        1 ttatgaagtt tccgagcgtt tggatagaaa aaaacttgaa aaaattttaa aaactataga
       61 attttatcat cttaaaaatg gaatttcatc ggattttcag attgatctga tttgcattaa
      121 aaatgatgtg atacaatttt gcgaaaatat aagtttttaa gctgatattt aaaaaaataa
      181 aatacaatta gacaaaaatt aaagaaagga aaaattatgg gaaaatatat tgaattaaca
      241 agtgataatt ttgctcaagc aaaagaaggt gtagctttag ttgatttttg ggctccatgg
      301 tgcggacctt gtagaatgct tgctccagtt attgatgaac ttgcaaatga cttcgatggt
      361 aaagctaaaa tttgcaaagt aaatacagat gaacaaggtg atttagcagc tgaatttggt
      421 gttcgctcta ttcctacact tattttcttt aaaaatggtg aagttgtaga tcaactcgtt
      481 ggtgcacaat ctaaacaagc aattagtgat aaactaaact ctttactata aactaaaggc
      541 tagtataact agccttcttc ttaaaaattt caaatttata ctaaataata atttttatta
      601 actactatta agaataattt ttatatcatt attaataata aaattcaata taaaggaaat
      661 gtaaatgtta gatgtagcaa tcataggtgg aggtcctgct ggacttagtg ccggacttta
      721 tgcaactaga ggtggtctta agaatgtagt aatgtttgaa aaaggtatgc ctggtggaca
      781 aattacctca agttctgaaa tagaaaatta tccaggtgta gcccaagtta tggatggaat
      841 ttcttttatg gctccttgga atgaacaatg tatgcgtttt ggtttaaaac atgaaatggt
      901 tggagtagag caaattttaa aaaatagtga tggaagtttt accatcaaat tagaaggtgg
      961 caaaacagaa cttgctaaag ctgtgatagt ttgtacaggt tcagctccaa aaagagcagg
     1021 ttttaaaggc gaagatgaat tttttggaaa aggtgtaagc acttgtgcaa cttgtgatgg
     1081 atttttttat aaaaataaag aagttgcagt tttaggtggt ggagatacgg ctttagaaga
     1141 agctttgtat ctagcaaata tttgttctaa agtttatctt atccaccgca gagatgaatt
     1201 tagagcagct ccatctacag tagaaaaagt taagaaaaat gaaaaaataa aactcattac
     1261 tagtgcaagc gtagatgaag tatatggtga taaaatgggt gttactggtg taaaagtaaa
     1321 attaaaagat ggtagtatta gagatttaaa tgttccagga atttttactt ttgttggtct
     1381 taatgtaaga aatgaaattt taaaacaaga cgatggtaag tttttatgca atatggaaga
     1441 agctgggcaa gtaagtgttg atcttaaaat gcaaactagc gttgctggac tttttgccgc
     1501 aggagatctt agaaaagatg cacctaagca agttatttgt gctgcaggtg atggagctgt
     1561 agctgcatta agtgctatgg cttatataga aagcttacat taagatttta taaagttgct
     1621 aaaagcaact ttatttttat ttagcttcct atcactccac catcaagttt tcttatcatc
     1681 attacactcg atcttggcgt ttttccataa ggaaaagtac taccttttaa accttctcct
     1741 ggatgttgta tacctacaaa cattgtggta taatcctcac taaaagcaat ccctgttaat
     1801 tcacaagcaa taggtcctgt taaaaaacgt ctgatttccc ctgtttttgg atttgctgct
     1861 aacatgcagt tatttcccat gccttcgtat tcatctttat tagaataaga tccatctgtt
     1921 tgtatccaaa gtcttccatc tctatcaaat ttaagtccat caggagaatt gaatttattt
     1981 tcacttgtaa tattatttga gcctttatat aagccttgtt ggttatcagg atttccagca
     2041 agagcaaaaa tttcccaagt aaaatcatcg tctttatgag aattttttgg catccatttt
     2101 aaaatttgtc cataaacatt tttagttctt ggatttgctg cattaggttc ttggcgattt
     2161 ttattatttg ttagtgttgc aaatacttct ttagaaccac tttgtttatg acttgctatc
     2221 cattcacatc tatccatagg agttgcacct acaatgcttg cagcaagacg cgtattaatg
     2281 agtacttgag cttgagactt aaaaccattt ttttcatcta ggccgttttt gccatattct
     2341 aaggctatcc attttccctg tcctttaaaa tctcccacct tgccgttaaa ctgtcctaca
     2401 tacaaagtgc cttcatctaa aattttactt gtatcagcac cttttttgta tttatgtttg
     2461 ctaacaaatt tataaataaa ttcattcatc tcatcatcac ccatataaac tataacagaa
     2521 ccatcttttt ctacgataat ttctgcattt tcatgtttaa aacgacctaa agaagttctt
     2581 ttaacaggtg tgctttttac atcaaaagga ttgatttcca ctatccaacc aaaacgattg
     2641 gcttcatcga tatttttagc taaatcaaat ctttcatcaa atttttccca tccataaaga
     2701 ctagttttgt taaatccata gcgcttaaga gagtcattaa attctagatt ttcatctgaa
     2761 cttccaaaaa aatcgtcaaa attttcttca caggtgatat aagttcccca aggtgtttgt
     2821 ccatttgcac aatttgcaaa agttccatga acaaattttt cattttttaa aacttctttt
     2881 ttagctactc cacttacttg cattttagtg tttgcatcga ttctgcgatt atatttagag
     2941 tctaaaacca cagtccaatc atcacccttt ttttcgattt ctaagatact tacacctaca
     3001 ctagcttgct cgtataaaac atcttctttg cttaaatttt taccatgatg attaaacatg
     3061 atttcaggat ttatatattc attattaacg gctaaaattc ctctgttttt tgaaagtgga
     3121 aaaaaactca taccatcatc gttatctcca aaaaccaaat gagcattttt aactgcattc
     3181 atatcgatga ttttactttc atcataaggt tttgctttac taaaaagtgg atcaccccaa
     3241 gaaattaaaa cctttgcttc ataaccttgt ggtactataa ctttatcttg cgtgcttgca
     3301 ctaacagctt taaaacctag caaatcctta tccttaagca tagcagcact taaatttgaa
     3361 cttgcaaaaa aagccaccat agaacctaaa gctgaacctt ttaaaaacaa tcttctttcc
     3421 atttgttttt actccatatt aaaatttaaa acaatggaag tataaaaata tttggaaact
     3481 ttttagaaac tttgatgaaa atttaaattg aaggaaaaat ttatacctag tttttcacta
     3541 ggtataaatg attaattaaa atctttt
//
LOCUS       DAZAND010000124         3530 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.126, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000124 DAZAND010000000
VERSION     DAZAND010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3530
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.126"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            133..>3530
                     /locus_tag="ACHDOB_001669"
     CDS             133..>3530
                     /locus_tag="ACHDOB_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HFN3326573.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKSEIDLSISKDEFSKDLEVLIEAKKPN
                     SKEFITHTKVNSKALHETILYYFRNREYSFSLKFIIITDFYKFYIFKISEFEELFYKN
                     PSFKKLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFK
                     NLASIYKTFHRDFLLSEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESK
                     EEQGTFYTTINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFK
                     KIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLK
                     LFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLG
                     NVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDAKDISELRKSLRKE
                     DKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILIT
                     GRKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIE
                     LLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLNHYPNIKERMGKYK
                     RIVKDYKEGFYTDKSHINQEIKNLKISFKNFCFADKFKKEMKSFNDKCEKYSKKYGNF
                     LAVDDENLKFFVSANLTLFDFDEKEATKEFVNLKKEYDNIFNLESNHPFEWRFEFPEI
                     LDDDGNFKGFDLIIGNPPYIRQEELKELKPHLAKNYKVYKGTSDIYTYFYELGFNVLK
                     DNGVLSYITSNKYTRAGYGEALREFLLKNVKVLEYTDLNGIKVFDSATVDTSILCFEK
                     SKSKDNKFKYLALSNEILKTCAYDIGLYKDFAEFSQNSLSKESFTFSDENTSALKAKI
                     ERIGTPLKEWQGLNIYRGILTGYNEAFIITTEKRNEILANCKDEAEKERTAKLIRKML
                     RGRDIKRYSYEWAGLWVIGTFPSLKLDIEQYPALKQYLSQFLPRIEQSGEKGCRKKTS
                     NKWFETQDNIAYYEEFEKEKIVWNRISSDLCFSYDNQKNFILDS"
BASE COUNT         1389 a          506 c          558 g         1077 t
ORIGIN      
        1 ttaaatgatt tttttattaa aaaacctata caggaagcat ataaaggtat taatgatata
       61 ttaaattctt aaaaaatttt atataaaagt aaaatttgat aaaatacaaa atatttttta
      121 taaaggttaa aaatgcattt cactttgcta aatgaaaaag attttttcaa cccatactac
      181 cgcaaaaagc aaatcatgca aaatgaattt gatatattta acaaggcttt aatgcagtat
      241 ttagaaagac ttgaaagttc gcaaagtgaa aatgaagatt atcttgtagc taatgcactt
      301 agtccatttt taaccatgtt aaatttcaaa actcacatca aaaccaagca aaaaggcaaa
      361 agtgagattg acttatccat ctctaaagat gagtttagta aagacttaga agttcttatt
      421 gaggctaaaa agccaaattc aaaagaattt atcactcata caaaagtaaa ttctaaagcc
      481 ttacacgaga ctattttata ttattttaga aatagagagt atagttttag cttaaaattt
      541 attatcatca cagattttta taaattttac atttttaaaa ttagtgagtt tgaagagctt
      601 ttttataaaa atccaagttt taaaaaactt tttgaagaat tttgtaatcc aaattcactt
      661 ttcaaaggta atactgaaga attctataaa gaagtagcca aactcataga aaattccaaa
      721 gaaaacttaa aaggcttttt gattgacttg acgtttttaa aagacaaaca aaaatcaaat
      781 tttaaaaacc tagcaagtat ttataaaact tttcatagag actttttgct aagtgagttt
      841 aaccccaacg atgcaaattc actcaacaat gctttttaca aagagctttt atatatctta
      901 gggctttgcg agagcaaaca aaactcaaaa ctcatcatcg caaaaagtga agaaagcaaa
      961 gaagagcaag gcactttcta caccactata aattctaagc ttaaagaaga aaattttgaa
     1021 accatcttaa aacttttgat cttatggctt aatcgcattt tgtttttaaa gcttatagag
     1081 tcaaatttgg tgcgttttaa tgatgataaa aatttgaaat ttttaaattt taaaaaaatc
     1141 cccgattttg acaagcttag cgaacttttc tttgaagttt tagccaaaga aaaaagcacg
     1201 cgaaagaaaa gcgaatttgc ttatctgcct tatttaaatt cttctttgtt tgaaaaacaa
     1261 agcatagaaa acacacttga aatttcaagc ttaagcaatg acttaaagct tttttactat
     1321 aaaaacaccg tgctaaaaga tgataaatgc aaggctaaaa aaggacaagt ggggcttttg
     1381 gagtatttgt ttgaattttt agatagtttt gattttggta gcgatgatga gcaaagcgaa
     1441 attttaagcc aaaaagaact cataagttca agtgttttag gaaatgtgtt tgaaaaactc
     1501 aatggctaca aagaaggaag tttttacacg ccaagcttta tcacttctta tatgtgcaaa
     1561 gaaagcatca caaaagttgt acttgataaa ttcaacgctc aatttgatct tgatgctaaa
     1621 gatataagtg aactaagaaa gtctttaaga aaagaagaca aaaaagcaca aaaagagctt
     1681 ttaaactcta taaaaatttg cgatcctgcg gtgggaagtg ggcatttttt ggtttctgct
     1741 ttaaatgtta tgctgagtat ctatgatgag ctaaatcttt ttgatgaaga attttatcta
     1801 gaagtgcaaa acgatgaaat tctcatcacg ggtagaaaag gcgagtttat agagtataaa
     1861 cgcccaagca cgcctaaaga taaagcccat cttatccagc aagaactttt tcataccaaa
     1921 aaagacatca tagaaaacaa cctttttgga gtcgatatca accctaactc atgcgagatc
     1981 accaagctaa ggctttggat agagctttta aaacacagtt tttatcaaag ctttgatgat
     2041 gaaaattatc acgatcttaa aacattgcca aacatcgata taaacataaa atgcggaaat
     2101 tctttggtat cttactttga aacaggcaaa agcctaaacc actatcctaa catcaaagaa
     2161 cgtatgggca aatacaaacg catagtaaaa gactataaag aaggctttta cacggataaa
     2221 agccacatca accaagagat aaaaaatctc aaaatttctt ttaaaaattt ctgttttgca
     2281 gataaattta aaaaagaaat gaaaagcttt aacgataaat gtgaaaaata ctctaaaaaa
     2341 tacggaaatt tcttagccgt agatgatgaa aatttgaaat tctttgttag tgcgaatttg
     2401 actctttttg actttgatga aaaagaagcc acaaaagaat ttgtaaatct aaaaaaagaa
     2461 tacgacaata tcttcaatct agaaagcaat catccttttg aatggcgttt tgaattccct
     2521 gaaattttag acgatgatgg aaatttcaaa ggctttgatc tcatcatcgg caatccgcct
     2581 tatataagac aagaagagct taaagaactc aagccccatt tagctaaaaa ttataaggtt
     2641 tataaaggca cgagcgatat ttatacttat ttttatgaac taggatttaa tgttttaaaa
     2701 gataatgggg tattgagcta tatcacttct aacaaataca cgcgtgcagg atatggggaa
     2761 gctttgcgtg aatttttgct taaaaatgtt aaggttttag aatacactga tttaaacggc
     2821 ataaaagttt ttgatagtgc tacagtggat acttccatac tttgttttga aaaatcaaaa
     2881 agcaaagata ataaattcaa ataccttgct ctaagcaatg aaattttaaa aacttgtgct
     2941 tatgacattg gcttatataa ggactttgca gaattttcgc aaaattcttt aagcaaagaa
     3001 agcttcactt ttagcgatga gaatactagt gctttaaagg ccaagataga acgaatagga
     3061 actccgctta aagaatggca aggacttaat atatatcgtg gaattttaac aggctataac
     3121 gaagccttta tcatcactac tgaaaaaaga aatgaaattt tagcaaattg caaagatgaa
     3181 gccgaaaaag aacgcaccgc caaactcata cgcaaaatgc tacgcggacg cgatataaaa
     3241 agatatagtt acgagtgggc gggactttgg gtgataggaa cttttccaag tttaaaactc
     3301 gatatagaac aatatcccgc attaaaacaa tatttatctc aatttttacc acgcatagaa
     3361 caaagcggag aaaaaggttg tagaaagaaa actagcaata aatggtttga aactcaagac
     3421 aatatcgctt attatgaaga atttgaaaag gaaaagatag tttggaatag aatttcaagt
     3481 gatttatgct tttcttatga taatcaaaag aattttattt tggattctat
//
LOCUS       DAZAND010000125         3524 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.127, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000125 DAZAND010000000
VERSION     DAZAND010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3524
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.127"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(66..1928)
                     /locus_tag="ACHDOB_001670"
     CDS             complement(66..1928)
                     /locus_tag="ACHDOB_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HFN3326574.1"
                     /translation="MRLSKTLCMALLAGSTLLAPNVLMAMGGPSGAKIDWQIQGQIGA
                     IKMNPYGLSPLTAIIMDNGYVLSDIKVTIVPKPNGQTISYNVNSKMAKTYGGIPIFGL
                     YPSYLNTVKVSYTKTANGKSQKVIDEIYKITTPGVSIEPSGSTDQRGTPFENVKVLKM
                     DPKFSDRLYLVNNAPGKQSGKGSQSVWNNPVGGAMEWDENSNVFIIDTKGEIRWYFDN
                     DKLMNWDNIYNRGIMMGFHQNKDGALTWGFGQRYVKYDILGREIFNRKLPAAYIDFSH
                     AMDNMQNGHYLLRVASANTLRPDGKHVRTVRDTIVEVDENGNVVDDWRLYEILDPYRS
                     TIIKALDQGAVCLNIDASKAGKTLSDEELAKMDESDKFGDIAGTGIGRNWAHVNSVDY
                     DPSDDSIIISSRHQSAVVKIGRDKKIKWILGAHKGWNKEFQKYLLQPVDKNGKKIVCD
                     DDYSKCPGYENDNGGFDFTWTQHTGWRIDSKSNKRYIYISVFDNGDARGAEQPAFASQ
                     KYSRAVIYKIDQQNKTVEQIWEYGKNRGNEWFSPVTSLTQYEPDKDSIMVYSATAGMA
                     FDLSKGVSLGEPKPEIDEFNWGAKEPSVQIQFSGSGTGYQAMPFSVDQAFNLKK"
     gene            complement(2028..2825)
                     /gene="dsbI"
                     /locus_tag="ACHDOB_001671"
     CDS             complement(2028..2825)
                     /gene="dsbI"
                     /locus_tag="ACHDOB_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HFN3326575.1"
                     /translation="MSCIKMKDNCRKFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMEPCEQCVYIRFDMLVMAIGGMIALINPTNNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLHEWAPSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFIVLFAMFIA
                     YVLDKNKLNAKIFALVIVILVLVLKFIGEPKNPNQNIASLNHLNQVV"
     gene            complement(2822..3484)
                     /locus_tag="ACHDOB_001672"
     CDS             complement(2822..3484)
                     /locus_tag="ACHDOB_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFN3326576.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYIILKNPIANADNS
                     LIEIFSYRCTHCYDHHKFNTMGKVKEKLPNLTYKFYPVSSMGDYGRQANEIFAFAAFK
                     DGVNKIDPTDKNSLTHKVAKAYFNAYFKKKQRWENGKNPEAFYSVGLKAMNVSKADLE
                     NFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIIPSAINSPEALIEITKELSK
                     QK"
BASE COUNT         1182 a          669 c          459 g         1214 t
ORIGIN      
        1 aaattttcaa agataatttt atttaaaaaa aataaataag cccaaattta tttttgggct
       61 tattgttatt ttttaagatt gaatgcttga tcaacactaa aaggcattgc ttggtaaccc
      121 gtgcctgaac cgctaaattg aatttgaacc gaaggttcct tagcgcccca gttaaattca
      181 tcaatttcag gttttggttc cccaagactt acacctttgc taagatcaaa agccattcca
      241 gctgttgcgc tataaaccat aatagaatct ttatctggtt catattgagt tagagaagtt
      301 acaggagaaa accattcatt tccacgattt ttaccatatt cccaaatttg ttccacagtt
      361 ttattttgct gatcgatttt ataaattaca gcacgagaat atttttgact tgcaaatgca
      421 ggttgttcag ctcctcttgc atcaccatta tcaaaaacac ttatataaat ataacgcttg
      481 tttgatttac tatcaattct ccagcctgta tgttgcgtcc aagtgaaatc aaatccacca
      541 ttgtcatttt cataacctgg gcatttgcta taatcatcat cacaaacaat ttttttgcca
      601 tttttatcta caggttgcaa taaatatttt tgaaattctt tattccaccc tttatgtgct
      661 cctaaaatcc attttatttt tttatcacga ccaattttaa caacagcact ttgatggcga
      721 ctagaaataa taatactgtc atcacttgga tcataatcaa cgctatttac atgagcccaa
      781 ttcctaccta tacctgtacc tgctatatct ccaaatttgt cgctttcatc cattttggca
      841 agctcttcat cgcttaaagt tttacccgct ttgcttgcat ctatatttaa acacactgca
      901 ccttgatcta aagctttgat aatggtactt ctataaggat ctaaaatctc atacaatctc
      961 caatcatcaa caacattacc attctcatct acttctacaa tagtatcacg cactgtgcgt
     1021 acatgcttac catctggacg caaagtattt gctgaagcta ctcttaataa ataatgccca
     1081 ttttgcatat tgtccatagc atgagaaaaa tctatatagg cagcaggtaa tttgcgattg
     1141 aaaatttctc ttcctaagat atcatatttt acatatcttt gaccaaatcc ccaagttaaa
     1201 gctccatctt tgttttgatg aaagcccatc ataattccac gattgtaaat attatcccag
     1261 ttcattagtt tatcgttatc aaaataccat ctgatttcac ccttagtatc tatgataaag
     1321 acatttgaat tttcatccca ttccatagca ccacctacag gattattcca tacagattgt
     1381 gagcctttgc cagattgttt tccaggagca ttatttacta aatatagcct atctgaaaat
     1441 tttggatcca tttttaatac tttcacattt tcaaaaggag ttcctctttg atcagtactt
     1501 ccacttggtt ctatgctaac ccctggagtt gtaattttat aaatctcatc aatgactttt
     1561 tgacttttac catttgcagt tttagtataa cttaccttta ccgtatttaa ataagaagga
     1621 taaagtccaa aaataggaat tccaccgtaa gtcttagcca ttttagaatt cacattataa
     1681 gaaatagttt gaccatttgg tttaggaaca atggttactt ttatatcgct taagacataa
     1741 ccattgtcca taataatagc ggtcaaagga gacaatccat aaggattcat tttaatcgcg
     1801 cctatttgtc cttgaatttg ccaatctatt ttcgctccac taggaccacc catggccatt
     1861 aaaacattag gtgcaagtag ggtagaaccc gccaaaagtg ccatgcaaag agttttgcta
     1921 agtctcatga tcaatccttt aaaattattt aagccatcct aaaatagctt aataaaattt
     1981 taataatacg cagcaaaaat aatttgttgc gtattttaag agtatcttta aacgacttga
     2041 tttaaatgat ttaaactagc tatattttga tttggatttt ttggttcgcc tataaattta
     2101 agcactaaaa ccaaaataac aatcaccaat gcaaaaattt tagcattaag tttattttta
     2161 tctaaaacat aggctataaa cattgcaaaa agcacaataa aacaacataa aaatgctata
     2221 agacagcaaa ttgccatatt cataaacttt aaactaggaa tcaaatacca accattgcta
     2281 taaagcccat tttcaaaatc aggtggagtt cctataaaaa atttttgaaa agcattaaga
     2341 tgattataag cattttctgg aactacaggg gtatccatcc cacattctcc tgttggcaaa
     2401 aaccaactag gagcccactc atgcaaaggt aaattaaatg gataaatagg aatttcacga
     2461 catccatcta cacctgcaaa aggattttca gaatgaacca cttcatgaat atgatttaaa
     2521 gttagacaat gctccaagcc aagccaaatt ccataaaaag ctaagctata agaaaaaatt
     2581 tttataatat tatttgtagg gttgattaat gcaatcatac cgcctatagc cataacaagc
     2641 atatcaaatc ttatatacac acattgttca caaggttcca taaaaagata ttcttgaaat
     2701 aaaaaatgtg ctatacaagt aagtcctata gtaactataa tcaaaattaa ccaaggtttg
     2761 cgcgtatctt gccatttaga aagtgaaaat tttctgcaat tatctttcat ttttatacaa
     2821 ctcatttttg tttgctaagt tctttagtaa tttcaatcaa agcctctgga gagttgattg
     2881 cacttggaat gatttgatat tttccattaa caacaaaagc aggggtgcca taattttgcg
     2941 aaataggatt ggcaatttca taacttttta aaagctctgc agcctctgga gtttttaaga
     3001 aattttccaa atcagcctta ctcacattca ttgcttttaa accgacacta taaaaagctt
     3061 caggattttt accattttcc catctttgtt ttttcttaaa atatgcatta aaataagctt
     3121 tagcaacttt atgagttaag ctatttttat ccgtaggatc aattttattt acaccatcct
     3181 taaatgccgc aaaagcaaaa atttcattag cttgccttcc ataatctccc atagaactta
     3241 caggataaaa tttgtaagtt aaattaggta atttttcttt aactttaccc atggtattaa
     3301 atttgtgatg atcataacaa tgagtacagc gataagaaaa aatttcaatc aatgaattat
     3361 cagcgttagc aataggattt ttaagaatta tatattcttt accttcactt aatgcactag
     3421 cacttatacc tgctaaaaaa gcacatacaa caatagatct tgctaatttt actggaaatt
     3481 tcattacctt ctccttgaaa tttggttttg ataaaacttt ttat
//
LOCUS       DAZAND010000126         3167 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.128, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000126 DAZAND010000000
VERSION     DAZAND010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3167)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3167)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3167
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.128"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..2231
                     /locus_tag="ACHDOB_001673"
     CDS             <1..2231
                     /locus_tag="ACHDOB_001673"
                     /inference="COORDINATES: protein motif:HMM:TIGR01549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HFN3326577.1"
                     /translation="YCEFLFETIFMLLGKYKNKLSTFSDYNQTRALAFIAEHITTFYI
                     LKQETELKKIKYAKIGFVKNTMNPKLELELIKRTLKKEIEKNSIISFDLFDTLFLRIF
                     YKPEDVFIYLEKRFQAIGFKENRVNAEILAKKKKGCYPKYDDIYQCIDKKFYYLKEYE
                     KKLEFSNIYVNPLMKDIFEYAKSLNKKIIFTTDMYHDKAFFVDLLHKNDICNYNDIYI
                     SGEIGKSKESGELFLYINEQLNIKDNTVLHIGDNYIADYLKPKDYNWNSFHIHPPFNY
                     FSKYDQISSYFLARKDDITSSIILGFILKKWLYSKSQYEYWKNIGYCYGGPICYALAK
                     FTYNEAVREKLCNFIFVARDGFVIKKIFDLIQSKQSNKKIKTHYIRAPRIINLLINLD
                     LDSNFSWDKAGSIIRSFKQYFINFEKININKLTYSEKINLIKSNWNRLMRISKIKYLE
                     YCKYIDSFKIRSSKIGFFDLSANSFSSMKIFRAVFPTSTKIKGYYWNVLSNAYKNKFD
                     YKAFNSLDTFLDDYAISELLITSNELPIVDIMSDGEFKFLDNKLERQRVQVVSEIIEG
                     EIEFSKNVLSIFSNKFDLIFDSSTLIDYINYFTNNVSFNDRYFLENIYQAVNEDHTRY
                     MKLQFSKDKYNFYESKPIGAVIKIKFHLSYKLGYALVSSRNFIDFIKLPVILISIIIA
                     HKNQSKLFNFLPLDHYADYEEACRVKGHLSYLLGAYLLKHPFKFIFNFKRILNDFRKN
                     KK"
     gene            2228..>3167
                     /locus_tag="ACHDOB_001674"
     CDS             2228..>3167
                     /locus_tag="ACHDOB_001674"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326578.1"
                     /translation="MKKRKFILAARDDGFGERMCCILNAMYISKKTSLKFRFVWKSKE
                     DSLVKVYNNKDKFLTCNDQIPIEVIFSHSFIKKYHYDNFNVSPLDNFHLFINRSIKEL
                     SLKPYEYHWGWRSCQANLANIFYDVKWKDYQNTLNQCWKEIEFSNKFQEIINQACILS
                     NKIGRYLAVHIRSGDLIFEEKGYGRWLWFAANKALSFHLALELILKKLNNFNIIIFTD
                     DIESGRQILDYVNKIKSSSYECILAYNLFKDEEDNSVYRTFFEIVTMSKAIEIYSSGD
                     SGFSRMACFIGQSKMINIYKLLNSYQQLNYISNNLKK"
BASE COUNT         1234 a          296 c          455 g         1182 t
ORIGIN      
        1 catactgtga atttttattc gagactattt ttatgctttt aggaaaatat aaaaataaac
       61 tatcgacttt ttctgattat aaccaaacta gagctttggc ttttatagcg gaacatataa
      121 ctacttttta tatattaaaa caagaaaccg agttaaaaaa aatcaaatat gcaaaaatag
      181 gatttgtaaa aaatactatg aatccaaaat tggaattaga acttataaaa agaacattaa
      241 aaaaagagat agaaaaaaat tctataattt cctttgattt atttgatact ttattcttgc
      301 gtatttttta taaaccagaa gatgttttta tttatttaga aaaacgtttt caagcaatag
      361 gatttaaaga aaatcgtgta aatgctgaga ttttggctaa gaaaaaaaaa ggttgctatc
      421 caaaatatga tgatatttat caatgtatag ataagaaatt ttattatttg aaagaatatg
      481 aaaagaaatt ggagtttagt aacatttatg ttaaccctct aatgaaagat atttttgaat
      541 atgcaaaatc attaaataaa aaaattattt ttacaacaga tatgtatcat gataaagctt
      601 tttttgttga tttattgcat aaaaatgata tttgtaacta taatgatatt tatatatctg
      661 gagagattgg aaaaagtaaa gaatctggtg aattatttct atatataaac gagcagttaa
      721 atataaaaga taatacggtt ttacatatag gtgataatta tatcgctgat tatttaaaac
      781 ctaaagatta taattggaat tcttttcata tacaccctcc ttttaactat ttttcgaaat
      841 atgatcagat atcatcatat tttttagcta gaaaagatga tattacgtct agtataattt
      901 taggttttat attaaaaaaa tggctttact ctaaaagtca atatgaatat tggaaaaata
      961 ttggatattg ctatggtggt cccatatgtt atgccttagc aaaatttact tataatgaag
     1021 ctgtgcgcga aaaattatgt aattttattt ttgttgcacg agatggattt gtaattaaaa
     1081 aaatttttga tttgatacaa agcaaacaat ctaataaaaa aataaaaaca cattatatac
     1141 gtgcaccaag aattattaat cttttgatca acttagattt agatagtaat ttttcttggg
     1201 ataaagcagg gagtattata agaagtttta aacagtattt tataaatttt gaaaagataa
     1261 atattaataa attaacttat tcagaaaaga ttaatttaat taaaagcaat tggaataggt
     1321 taatgagaat aagtaagatt aaatatttag aatattgtaa atatatagat agttttaaga
     1381 ttagaagcag taaaattggt ttttttgatc ttagtgctaa ttcttttagt tcaatgaaaa
     1441 tttttcgtgc agtttttcca acatctacta aaataaaagg atattattgg aatgttttat
     1501 ccaatgctta taaaaataag tttgattata aagcttttaa ttcgctcgat acttttttag
     1561 atgattatgc catttctgaa ttattaatta cttccaatga gttacctatt gtagatatta
     1621 tgtcagatgg agaatttaaa tttttagata ataaattaga acgacaaaga gttcaagtag
     1681 taagtgaaat tattgaaggc gagatcgaat tttcaaagaa tgtattgagt atatttagta
     1741 ataaatttga tcttattttc gatagtagta ctttgataga ttatattaat tattttacga
     1801 acaatgtttc atttaatgat agatattttt tagaaaatat ctatcaagct gtaaatgagg
     1861 atcatactag atatatgaaa ttacaatttt ctaaagataa atataatttt tatgagagta
     1921 aaccaattgg agctgtgata aaaattaaat tccatctttc ctataagttg ggttatgcat
     1981 tggttagctc tagaaatttc attgatttta ttaaacttcc tgtaatttta atttcaatta
     2041 taattgctca taaaaatcag tctaaacttt ttaatttttt accacttgat cattatgcgg
     2101 actacgagga agcttgtaga gtaaaaggtc atctttcata tttattgggt gcatatttat
     2161 taaaacatcc ttttaaattt atttttaatt ttaaacgtat attaaatgat tttaggaaaa
     2221 ataaaaaatg aaaaaaagaa agtttatact ggctgcacgt gacgatggtt ttggagagag
     2281 aatgtgttgt attttgaatg caatgtatat aagtaaaaaa acttcattaa aatttagatt
     2341 tgtttggaaa agtaaggaag atagcttagt aaaagtttat aacaataagg ataaattttt
     2401 aacttgcaac gatcaaattc ctatagaagt tattttttct cattctttta taaaaaaata
     2461 ccattatgat aatttcaatg taagtccttt agataacttc catttattta ttaatagaag
     2521 cataaaagaa ttaagtttaa aaccttatga atatcattgg ggatggagat cttgtcaggc
     2581 taatttagct aatatttttt acgatgtaaa atggaaagac tatcaaaaca cgttaaatca
     2641 atgttggaaa gagatagaat tttctaataa attccaggaa atcataaatc aagcttgtat
     2701 tttatcaaat aaaattggta gatatcttgc cgtacatatt agatctggag atttaatttt
     2761 tgaagaaaaa ggatatggca gatggttgtg gtttgctgca aacaaggctt taagtttcca
     2821 tttggcacta gagttaattt taaaaaaatt aaataatttt aatattataa tatttactga
     2881 tgatattgaa agtggacgac aaatactaga ttatgttaat aaaataaaat catcgagtta
     2941 tgaatgcatt ttagcatata atttatttaa agatgaggaa gataattctg tatatagaac
     3001 attttttgag atagttacca tgtctaaagc tattgaaata tattcttctg gtgatagtgg
     3061 attttctaga atggcatgtt ttataggtca atcaaagatg attaatattt ataaactgtt
     3121 aaactcatat cagcaattaa attatatttc caataattta aaaaaat
//
LOCUS       DAZAND010000127         3122 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.129, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000127 DAZAND010000000
VERSION     DAZAND010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3122)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3122)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3122
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.129"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..2530)
                     /gene="acnB"
                     /locus_tag="ACHDOB_001675"
     CDS             complement(<1..2530)
                     /gene="acnB"
                     /locus_tag="ACHDOB_001675"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HFN3326579.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTKELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLNSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAREVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQAGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVINLEMGDEFEIHPYEGKIIKNGSTIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCAKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     MTLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYENK
                     ATLVRRAEKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADNKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSDEHKANIYRYLNFNEIEN"
     gene            2585..3037
                     /gene="ogt"
                     /locus_tag="ACHDOB_001676"
     CDS             2585..3037
                     /gene="ogt"
                     /locus_tag="ACHDOB_001676"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HFN3326580.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLVK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMKIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIASNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            complement(3029..>3122)
                     /locus_tag="ACHDOB_001677"
     CDS             complement(3029..>3122)
                     /locus_tag="ACHDOB_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326581.1"
                     /translation="KNFKYCLILENYDIFEQEFENKENQTPSLF"
BASE COUNT          939 a          588 c          480 g         1115 t
ORIGIN      
        1 aattttcaat ctcattaaaa tttaaatatc tatagatatt tgccttatgc tcatcactta
       61 gtttttcgct aacaatttgt aagtattctt ccttgcttgg aattttaccc aaaatcgcac
      121 aaactgctgc aagttctgca ctgcctaaat atactttagc acccattccc atacggttgt
      181 caaaatttct tgtagaagtt gagaaaacta cagctccatc atttactcta gcttgattac
      241 ccatacacaa agaacaacca ggaacttcta ttctagcacc tgctgcacca aagatgctgt
      301 aataaccttc attagtaagt tgtgctttat ccatttttgt tggaggcact acccaaagtc
      361 tggttttaag tatgccttta tcttttaaaa tttctcccaa agctctataa tgtcctatgt
      421 ttgtcataca agaacctaca aaaacttcat ctatattttt tggacgctta ttatcggcta
      481 aaatttcgct taaggttgcc acatcatcag ggtcatttgg acaagctagg attggctctt
      541 taatgtcatt aagattaata tctataatat aagcgtattt tgcatcttta tctgctctta
      601 aaagagtagg gtttttaagc cattctctca ttttttcagc ccttctaaca agggtagctt
      661 tattctcata tcctgcttct atcatagctt caattaaaga aatattggat ttgatatatt
      721 cgcttacact ttctatgctt aaatccacac tacaagcagc ggcagatctt tcagcgcttg
      781 catcgctgag ttcaaaagct tgttcgactt ttaagtttgg caagccttct atttctaaaa
      841 tttttcctgc aaaaatattt ttcttatttt tcttttcaac agtaagttgt ccttgtttga
      901 ttgcataata aggtatagca ttaaccaaat ctcttaaggt aactccagct tgcaattctc
      961 cgctaaaacg tactaaaaca ctttcgggta catttaaagg catagagcca gtaaccgcag
     1021 caaaagctac aagtccgctt cctgcaggga aagaaattcc tataggaaag cgtgtgtgag
     1081 aatccccgcc cgttcctacg gtatctggca atacaaaacg attaagccaa gagtgaataa
     1141 ccccatcacc tggttttaaa ctcaccccac cacgacttgt catgaaattg ggcaaggttt
     1201 tatgtaaatt tgaatcgctt acttttggat aagcagctgt atggcaaaag ctttgcatca
     1261 caaagtctgc attaaaacct aggcttgcaa gctctttaat ttcatctcta gtcataggac
     1321 ctgtagtatc ttgagagcct acagttaaag tcataggttc tatatacata cctggacgca
     1381 caccttcaac tccacaggca cgacctagca ttttttgagc caaggtataa ccaccgcttg
     1441 aagatttagg ttgttcaggt ttggtaaaga tattttcact ttccatacct aaaaattctc
     1501 tagccttagc acaaagccca cgacctatga taagtgggat tcttcctcct gctctaactt
     1561 catctaagag agtgtttgga ctgagtgtaa attctgcaat tgtagagcca ttttttatga
     1621 tttttccctc ataaggatga atttcaaact catcgcccat ttctaagttt attacatcac
     1681 agatgatagg taaagcccca ctatcttgag cagtgttaaa gaaaatcggt gctatggttg
     1741 aacccattac tataccaccg ctgtgcttgt ttggtacacc ttctatttct tttcctaagt
     1801 gccattgtat agaatttatt gctgattttc tacttgaacc tgttcctaca acatcaccta
     1861 cataaactac ttcgcgaccg ctttttttaa gctctttgat tttttctaag gatcctgctt
     1921 gtcttacctt tagcatggca tttgcatgca aaggaatatc gcttcttgta aaagcatctc
     1981 ctgcagggct tagatcatcg gtatttgttt cccctgctac tttgaaaact atacatttaa
     2041 tcacttgagg taatttttct tttttgttaa accagtccgc atttgcccag ctttgtaaaa
     2101 cttccctagc gtgtggattg tttttgctaa gttcagctat ggtatgaaaa ttatcatgaa
     2161 caaaaataat atttttcaac acttctgcag catctttggc tatgttttca tcttttaaag
     2221 catcgattaa aactttaaca ttatatccgc ctaacatagt tccaagcatt cttaaggctc
     2281 tttttttgtc tatatttgga gcactgattt tgcctttaag tatagaattt aaaaattcac
     2341 attttactaa agctgcatca tcaacaccag gatttactct attttctaaa agatttgcaa
     2401 gctcttcatt attttcattt tcaagtagtt tacaaagttc tttagtttga tttgcattta
     2461 aaggaagggg tggtataccc aaagcggctc tttcttcaac aagtttattg tattcttgca
     2521 taaaagacat tttctactcc ttaaatattt tttattataa ttgtagctct ttgaaggata
     2581 aaaaatgttt aaagtttatt ataaaatgcc tttatgttac ctatctttac atagtgatgg
     2641 aaaattttta actagagtcg atttttgtga taataaaaga tcagaaaaaa attgtagttt
     2701 gcttgactta gtaaaatatg aacttgattt atattttact cataagctta gaaaatttag
     2761 cattcctgtt ttgatacaag gtacagattt tgaatcaaag gtttataagg ctttaatgaa
     2821 aattccttat ggtaaaatag ctacttataa agatatagca gaaaaaatta atcatccaaa
     2881 agcttttaga gctgtcggaa atgcaaattc taaaaatcag attcctattt ttataccttg
     2941 tcatagagtt attgcaagta atggcatagg aggatataat ggagggcttg aaataaaaag
     3001 atttttgctt gaaaatgaag gagtgaattt aaaataagct tggggtttga ttttctttgt
     3061 tttcaaattc ttgttcaaaa atatcataat tttcaagaat taaacaatat ttaaaatttt
     3121 tt
//
LOCUS       DAZAND010000128         2998 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.130, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000128 DAZAND010000000
VERSION     DAZAND010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2998
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.130"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            101..1969
                     /gene="rpoD"
                     /locus_tag="ACHDOB_001678"
     CDS             101..1969
                     /gene="rpoD"
                     /locus_tag="ACHDOB_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HFN3326582.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTAKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(1984..2496)
                     /locus_tag="ACHDOB_001679"
     CDS             complement(1984..2496)
                     /locus_tag="ACHDOB_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HFN3326583.1"
                     /translation="MKKIYIIRHAKASKSGDIDDFERKLTKSGKEDLKKLFKNLALHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNKICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPGLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(2493..>2998)
                     /locus_tag="ACHDOB_001680"
     CDS             complement(2493..>2998)
                     /locus_tag="ACHDOB_001680"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HFN3326584.1"
                     /translation="LIFLNILCYFLISYDYYNILGSNILFFNGAYWQLLSSMFLHGNL
                     THLILNMIVLFQFGRILETYLGALRFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINV
                     IGASGAICVLMGFYAVLDKNSTKGLIVAILLMSFAPLLMGVNVAWYGHIFGFMCGYIL
                     AKIKEVK"
BASE COUNT         1293 a          438 c          434 g          833 t
ORIGIN      
        1 gaaaaaatat tcaaatcata agcataataa ccgatttata tagaaagtta agcaattttt
       61 agataaaatc caaagcttat ataaatttca aggataatca atgaacgcca aaactcaaga
      121 agctgaatta gaagaattat ttcaagaaaa tgcaaaagat tatatcacat atgaaaaatt
      181 ggtaaaatat cttacaaaac aaccaagtgc atcaaccgct aaaaaagtgc aagcattaat
      241 gaaaaaacac aaagtacaac ttttttcagc agccgaaatt gcacaaatga aaaacataga
      301 agatgcaaaa agacttcaag aagaaaaaca aaaactccaa gatacaagcc ttgagaacga
      361 atttgattta gccaatgaaa acgatttatt agaatggagc agatcagact ctcctgttcg
      421 tatgtattta agagaaatgg gacaaattgc tttattaaac aaagatgaag aaattgaaat
      481 ttccaaaaaa atagaacttg gcgaagatat tatcattgat gctttttgtt ctgtgcctta
      541 tttgatagat tttattttag attataaaga acctttaata aacagagaaa gaagggtaaa
      601 agaactattt aaaagctttg acgatgaaga aaaaagtgat gataaacttg atgaacttga
      661 tatagatgaa gatgaagaaa acgaaacaga attagaatca gatgaagaaa atactaaaaa
      721 aaacagcaaa aaagaagatg aaagaacttt aaaagttata gaaaaattta aagctctaga
      781 aaaagctaaa aaagattggt taaaaacatc caaagacaaa gaaagtggag atgagctttt
      841 agataaatta agcattgcgt tcaaaaaaaa tattttaaaa gaaaaattaa tggatctagg
      901 ccctacttca aaacttatta gtgaaatcgt aaaatcaatg gaaactgcac taaaaagcga
      961 tgaagaattt gacaaagaac ttaagcgttt agaataccgc ttacctatgt tttctgatga
     1021 acttaaaaaa cgccatgcag atattttaaa agatattaca aaattgagca aagaagaaat
     1081 cacagagcga gctttagaaa caaccatggt aagcacttat atggaaatta aaaaactatt
     1141 tcaaactaaa gaagctagtg aaaaaagctt tgatcttgaa aaatcacgtt taaaagaaat
     1201 tttagagcaa attaaacgcg gtaaaaaaat ctctgatgaa gcaaaaggaa gaatggcaaa
     1261 atcaaacttg cgtcttgttg taagcatagc taaacgctac acaaatcgtg gtctaccttt
     1321 cttagatctt attcaagaag gaaatatagg tttaatgaaa gctgtggata agtttgaata
     1381 caaaaggggt tataaatttt ccacttatgc aacttggtgg atcaggcaag ctatttcaag
     1441 ggctatagct gaccaagcaa gaaccataag aattccaatc cacatgatag aaaccatcaa
     1501 tcaaattaac aaaattatcc gcgaacatct acaaaaagat ggaaaagaac ctgatgtcag
     1561 tgttatagct aaagaagtag gtttaagcgt agataaggtt aaacaagtta ttaaaatcac
     1621 aaaagaacca atttctcttg aagctccaat aggaaatgaa gatgatggta aatttggaga
     1681 ttttgttgaa gatagaaatt cactttctcc aatggatcat atcttaaagg atgatttaaa
     1741 agaacaaatt gatgaagttt tagatcaatt aaacgataga gaaaaagcgg taattcgtat
     1801 gcgttttggt ttaatggatg atgaaagtga tagaacttta gaggaaattg gaaaagagct
     1861 taatgtcact cgagaaagag tgagacaaat agaaagttca gctataaaaa aactcaaaca
     1921 ccctaaagta ggaagaaaac taaaaaatta tattgaaggt tggaagtaag agtcaatctc
     1981 ttgctaaaaa cccaaatctt tttcttcttt taacttgcgc acatgttcaa aaaaaactaa
     2041 ttttccgcta tgttttttta aatttttaaa ttccttaata tcaaattcta aacacaagat
     2101 agaagaagtt ggaaaagaag ctaaacatag cgagcttaat aactctccaa gctccattaa
     2161 accaggatta tgacccacta aaaatacttc gttaaactca tcatcaatat cttgcagaat
     2221 ttttagcaaa ttttcaacat tacaaagata caatctttca tcaaaacaaa ttttattttt
     2281 atcaaaatta taaaatttgg ctattttttt cgctgtttta gcggttctaa cagcaggact
     2341 tgatagcacc aaatcaggat gaatttcatg taaggcaaga tttttaaaaa gtttttttaa
     2401 atcttccttt ccactcttag taagttttct ttcaaaatca tcaatatccc cactcttact
     2461 tgcttttgca tgtcttataa tataaatttt tttcatttta cctcttttat tttagctaaa
     2521 atataaccac acataaaccc gaaaatatga ccataccaag caacatttac ccccataagc
     2581 aatggcgcaa aactcataag taaaattgcc actataagtc cttttgtgct atttttatca
     2641 agaacagcat aaaagcccat taaaacacaa attgcaccac tagcgcctat gacatttata
     2701 ttttctccga aatatttaaa atcaaaatac acataaaaaa cacttaaaag tgaacacaac
     2761 aatccgccaa taaaataaat aaaaataaaa cgcaaagcac ctaaataagt ttctaatata
     2821 cgcccaaatt gaaacaaaac tatcatattt aatataagat gagttaaatt tccatgtaaa
     2881 aacattgaac ttaaaagttg ccaataagct ccattaaaaa ataaaatatt cgaaccaagg
     2941 atattataat aatcataaga aatcaaaaaa taacataaaa tatttaaaaa aattaaaa
//
LOCUS       DAZAND010000129         2990 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.131, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000129 DAZAND010000000
VERSION     DAZAND010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2990)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2990)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2990
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.131"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..722
                     /locus_tag="ACHDOB_001681"
     CDS             <1..722
                     /locus_tag="ACHDOB_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN3326585.1"
                     /translation="FVFFVIIILWGYFSFPIEILKIQDPSGIVSYGYTENAKAYLKSY
                     LITLLLTACAVIIGVIIGFSLAILHFSKFKTLNFIIDEYIDIIRGTPVILQLMIFAFV
                     IFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQIEAARAMGLDYKTSMKEIIL
                     PQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPIIFTGLVYY
                     VSVKIFSYFAKKLELRMNKND"
     gene            715..1443
                     /locus_tag="ACHDOB_001682"
     CDS             715..1443
                     /locus_tag="ACHDOB_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFN3326586.1"
                     /translation="MIEVKNLQKKYGELEVLKDINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(1471..2937)
                     /locus_tag="ACHDOB_001683"
     CDS             complement(1471..2937)
                     /locus_tag="ACHDOB_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFN3326587.1"
                     /translation="MNLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHTKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVVHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNTQQKSGIDPKFNASKLGIKNAECWD"
BASE COUNT         1139 a          480 c          440 g          931 t
ORIGIN      
        1 tttttgtttt ttttgttatt attattttat ggggctattt ttctttccca atagaaatat
       61 taaaaattca agatcctagt ggaattgtaa gctatggcta tacagaaaat gcaaaagctt
      121 atttaaaaag ttatcttatt acacttttat taactgcttg tgctgttatt atcggagtga
      181 ttattggttt tagtttagct attttacact tctctaaatt taaaacgctt aattttatta
      241 tagatgaata tatagacatt atacgaggaa caccagtaat tttacaattg atgatttttg
      301 cttttgtaat ttttactttt atagataacc tttatgcagc cattcttgca ctaggactta
      361 atagctcggc ttatatagca gaaattgtaa gaagtggcat taatagtgta gataagggac
      421 aaatagaagc tgcaagagca atgggacttg attacaaaac ttcaatgaaa gaaattattc
      481 ttccacaggc tactaaaaac attctacctg cattagctaa tgaatttatt tctttattta
      541 aggaaacttc tgttgtagga tttattagtg ttattgatat taccatgcaa agtcaaagcc
      601 tgcaagccgt actttacaat ccaaaaccta ttattttcac tggacttgtt tattatgtaa
      661 gcgtaaaaat ttttagctat tttgcaaaaa aacttgaact taggatgaat aaaaatgatt
      721 gaagttaaaa atttacaaaa aaaatatgga gaattagaag ttttaaaaga tattaacact
      781 acaatctcaa aaggcgatgt aatagctatc ataggtccaa gtggaggcgg aaaaagtaca
      841 tttttacgct gtatcaatcg cttagaacta gctgatagtg gggaaatttt aatcaataag
      901 caaaacatac ttgataaaga aattgatatt aataagatca ggcaaaaagt tagcatggta
      961 tttcagcatt ttaatctttt tgctaataaa aatgttatgg aaaatttatg tttaacgccc
     1021 attaaaacag gaattttaag tcaagaagaa gccataaaaa aagcaaaatt acttcttgct
     1081 aaggtgggtt tagcagacaa agaaaatata atgcctcata agctctctgg cggacaaaaa
     1141 caacgcatag ctattgctag aagcttgatg atgaatcctg atgttatttt atttgatgaa
     1201 cctacttcag ctctagatcc tgaaatgata ggcgaggttc taagcattat gaaagatgtt
     1261 gcaaaagaag gtttaactat gcttgtagta actcatgaaa tgggctttgc tagaaatgtt
     1321 gccaatcgta tattttttat ggataaagga aaaattgctg ttgatgcaag ccctaaagaa
     1381 gtatttgaaa atcctagcaa tgaaagattg agagaatttt taaacaaggt tttaaatcat
     1441 taattcataa gccactaagg cttatgaatt ttaatcccaa cattcagcgt ttttaattcc
     1501 aagtttgcta gcattaaatt taggatctat accagatttt tgttgcgtat taaaatcttt
     1561 taaaacttta tttactatac cacctaaaag caataaagat ataatatttg tcgttgccat
     1621 gaaagccata gtcaaatcag ccaaattcca agcaagtttt aaattcattt gcgagcctat
     1681 aaaaatcata gccacagctg taattctaaa caaattcatt acaaatttgg aatttgttaa
     1741 atatttaaca ttagcttgag cataataata atttcctatt aaagaagtta ttgcaaaaag
     1801 aacaatagct atagtaataa aatggattcc aaagctaccg taatactcac gcatagcttc
     1861 ttgaactaaa ggcattccac catcaatttt actttctcca agtcccaaat atgccataga
     1921 aaaaagaact aaaaatccag aacttgtaca aacaacaaca tcaattaaaa ctgaaaaggc
     1981 ttgtataaca ccttgtttag ctggatgact tgtcaaagct gctgcagctg cattaggtgc
     2041 tgagcccata cccgcttcat ttgaaaaaag tcctctttta atccctataa ctaaagcaga
     2101 accagcaaaa ccaccaaaaa tagctttaaa atcaaaagca ctttgtaaaa tcatatgaac
     2161 cacagaagga attttatcaa aattcattaa aacagcaatc acagcaagca aaacataagc
     2221 taaagccata aaaggaacaa ttaaagaact aattttacct attttagtat ggtgagaaaa
     2281 aaacatccat gcgccaaaaa tagttaaaac aataccaatg atcattggcc aagaacttga
     2341 tgcaaaatct acagcagcat ttggattaaa catatcataa taaactttaa aagatgaagt
     2401 cattgtttga ctttgaagtc cgttaaatcc ataagcataa gtaataataa gaataaaagc
     2461 aaaaaaagct ccaaaaaaat gtgagcctaa ggcttttttt atataataag ctggaccacc
     2521 tttaaaccca cctgtatcat cttttgattt ataaacttga gctaaggtac tttcagcaaa
     2581 tgctgaggca ccaccaaaaa atgccataac ccacatccaa aataaagcac cagcgccacc
     2641 tgtagccaat gccaaagaaa ttccagcgat atttcctata ccaactctag aagcagttga
     2701 gatcatcaat gcctgaaaag gtgaaatatg ttctttagtg tgtccttcat ttttttctgt
     2761 aagaatttta aatacagaac tcaacatacg aaactgaaca aagcgagtta aaaagctata
     2821 ataaagtcca caaacaataa gcaaaaccac cataataatg tctgtatttg ggacaatctt
     2881 attagctata atatcagacg ctttattggc aaaatctagc ataatatcta aattcatcca
     2941 aactcctcaa aaaataatct aaattttact ttaacataat ttttataaaa
//
LOCUS       DAZAND010000130         2869 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.132, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000130 DAZAND010000000
VERSION     DAZAND010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.132"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..138
                     /locus_tag="ACHDOB_001684"
     CDS             <1..138
                     /locus_tag="ACHDOB_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 1-phosphate
                     guanosyltransferase"
                     /protein_id="HFN3326588.1"
                     /translation="KFSFEEFLQENYKKLKARACIFDNYFIDIGVPEDYYNFITNQSH
                     F"
     gene            150..1964
                     /locus_tag="ACHDOB_001685"
     CDS             150..1964
                     /locus_tag="ACHDOB_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HFN3326589.1"
                     /translation="MYNPNSAIERVKNHLAYKLGQAMIDFTNNGGGYIALFKKLYKIK
                     KQHKKEQKIYQQTIQVFPQLKYPSLEACSDYEQALRYKFHLSYMLGEVLIKADVNKFK
                     DGYFFLFKNIEQTKKDYKIIKEILDLSKKFEENIYTILAENKNLFMCNLDNLKIILDL
                     HKNYIPVLKVIFQNFNYTLNHLEMIQEWLLSSDFKQRFQDVNHPYPSLLDPKKLNDQA
                     EKINYHNISGELAWKMNLPLPENYKLIWLWAACSGTMAIYTFFNYSDISTINANGWED
                     EKKVYIDNYTYILSKKTHVAIAPRVFENNDKIYYLFTSNVPLLYICRDPISIIRHAIN
                     HIGDQNSKIKPMMKQITLNSNFKELFPEILYWYSNSSKPELNSLIKVLDNYELYFKSY
                     QRIKILKKDVLCFELNEISGLNARKTFDFIADKFFNVKCDYSFFSKRINRHQGDLVVL
                     PVVYSIVIGEICINIVITTKNLMYFNSLEPKMTDEDYIDITSEIFKERKLMFDNIILL
                     IKQKEYNILKNNQKYFIDSKKYLNGYMDAFEENEIKIKNNLITEEEILQYLQMRKDLL
                     FKLKDILDEELNFIKINYPKHLKQWKYYQKFEQMCNET"
     gene            1954..2487
                     /locus_tag="ACHDOB_001686"
     CDS             1954..2487
                     /locus_tag="ACHDOB_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HFN3326590.1"
                     /translation="MKHNLTIWLTGLAGSGKSYIAQALYRKLKEKYDNVIYLDGDELR
                     ELLGCFSYDKKGRMDVSFKRSDFARFLSNQGMIVIVSAISMWNEIYEYNRKYLKNYFE
                     IYIKCEFEELKRRDKKNLYTQALKGEISNVVGVDIPYDEPNADLVIDNTQMAALDDKV
                     CLILTALSQNLDNSKCE"
     gene            2488..>2869
                     /locus_tag="ACHDOB_001687"
     CDS             2488..>2869
                     /locus_tag="ACHDOB_001687"
                     /inference="COORDINATES: protein motif:HMM:NF025664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326591.1"
                     /translation="MLQVTHENFLDLKYFASGVFYPLEGFMNYEEYKKVIYEMQLLNG
                     EIWTLPITLEVDDFKDIYVGQKQDLYYQDKFIGNIQIEDKFCVQDRDLYEIFQTKDEK
                     HPGFIKEKKRSSLRVGGKIELKEEF"
BASE COUNT         1156 a          295 c          428 g          990 t
ORIGIN      
        1 aaattttctt ttgaagaatt tttgcaagaa aattataaaa aactaaaggc tagagcttgt
       61 atttttgata attattttat agatattggc gtgcctgagg attattataa ttttataacc
      121 aaccaaagcc atttttaaag gaaaacccta tgtataaccc aaactcagct atagaaagag
      181 taaaaaatca tttagcttat aaattaggtc aagctatgat tgactttaca aacaatgggg
      241 gggggtatat agcattattt aaaaaacttt ataaaattaa aaaacaacac aaaaaagagc
      301 aaaaaattta tcaacaaacc atacaagttt ttcctcaact caaatatcca agtttagaag
      361 catgtagtga ttatgaacaa gctttaagat ataaatttca tttgtcctat atgctaggtg
      421 aagttttaat caaagctgat gtgaataagt ttaaagatgg gtattttttt ctttttaaaa
      481 atatagaaca aaccaaaaaa gattataaaa taataaaaga aattttagac ctttctaaaa
      541 agtttgaaga aaatatttat actatactcg ctgaaaataa aaatttattc atgtgtaatt
      601 tggataattt gaaaattatc ttagacttgc ataaaaatta tataccagta ttaaaagtta
      661 tttttcaaaa ttttaattat acactaaatc atttggaaat gatacaagaa tggttattat
      721 caagtgattt taagcaaaga tttcaagatg taaatcatcc ttatccttct ttacttgacc
      781 ctaaaaaact taatgatcaa gcagaaaaaa taaattatca taatatttca ggggaattag
      841 cttggaaaat gaatttacca ttgcctgaaa attataaatt aatatggtta tgggctgcat
      901 gtagtggaac aatggctatt tatacatttt ttaattattc agatatttca actattaatg
      961 caaatggttg ggaagatgaa aaaaaagttt atatcgataa ttatacgtat atattaagca
     1021 aaaaaacaca tgtagcaata gctccaagag tgtttgaaaa taatgataaa atttattatt
     1081 tatttactag caatgttcct ttattatata tatgtagaga tccaatatca attatcaggc
     1141 atgcaataaa tcatataggc gaccaaaata gcaaaataaa accaatgatg aaacagataa
     1201 ctttaaattc aaattttaaa gaactttttc cagaaatact ttactggtat tccaattcaa
     1261 gcaaacctga attgaatagt ttgataaaag ttttagataa ttatgaactt tactttaaat
     1321 catatcaaag aattaaaatt ttaaaaaaag atgtattgtg ttttgaactt aatgaaatct
     1381 ctggtttaaa tgctcgaaaa acatttgatt ttatagctga taaatttttt aatgtaaaat
     1441 gcgattattc ttttttttct aaaagaatta atcgccatca aggtgatttg gttgtgcttc
     1501 cagttgtata ttctattgtt ataggtgaaa tttgtattaa tatagtaatt actacaaaaa
     1561 atcttatgta ttttaattct ttagagccta agatgacaga tgaagactat attgacatta
     1621 cttctgaaat ttttaaagaa agaaagttaa tgtttgataa tattatttta ttaataaaac
     1681 aaaaagaata taatatttta aagaataatc aaaaatattt tatagatagc aaaaaatatt
     1741 taaacggtta tatggatgcg tttgaagaga atgagataaa gattaaaaac aatcttatta
     1801 cagaagaaga aattttgcaa tatttacaaa tgagaaaaga tttgctattt aaattaaaag
     1861 atattttaga tgaagaatta aattttataa aaataaatta tccaaagcat ttaaaacaat
     1921 ggaaatatta tcaaaaattt gagcagatgt gtaatgaaac ataatttaac tatttggctt
     1981 acaggtttag caggaagtgg taaaagttat atagcacaag cattgtatag aaaattaaaa
     2041 gagaaatatg acaatgttat ctatcttgat ggagatgagt taagagagct tttgggatgt
     2101 ttttcctatg ataaaaaagg tcgcatggat gtatccttta aacgatccga ttttgctcgt
     2161 tttttaagta atcaaggaat gatagttatc gtaagtgcga tttctatgtg gaatgaaatt
     2221 tatgagtata accgcaaata tttaaaaaat tattttgaaa tttatataaa atgtgaattt
     2281 gaagagttga aaagacgtga taaaaagaat ttatatactc aagctttaaa gggtgaaatt
     2341 tcaaatgtcg tgggtgtaga tattccgtat gatgaaccaa atgctgattt agtgattgac
     2401 aatacccaaa tggcagcact tgatgataag gtttgcctta ttttaacagc actttctcaa
     2461 aatttagata attcaaagtg tgaataaatg ctacaagtta ctcatgaaaa ttttctagat
     2521 ttaaaatatt ttgctagtgg tgtgttttat cctttggaag gttttatgaa ttatgaagaa
     2581 tataaaaaag taatttatga aatgcaactt ttaaatggtg aaatatggac cttgcctatt
     2641 actttagaag tggatgattt caaagatatt tatgtgggac aaaagcaaga tctatattat
     2701 caagacaaat ttataggaaa tattcaaatt gaagacaaat tttgcgttca agatcgggat
     2761 ctttatgaaa tttttcaaac taaagatgaa aaacatcctg gttttataaa agaaaaaaaa
     2821 cgctcttctt tgcgtgttgg tggaaaaata gaacttaaag aagaatttt
//
LOCUS       DAZAND010000131         2844 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.133, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000131 DAZAND010000000
VERSION     DAZAND010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.133"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(15..1034)
                     /gene="flgS"
                     /locus_tag="ACHDOB_001688"
     CDS             complement(15..1034)
                     /gene="flgS"
                     /locus_tag="ACHDOB_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HFN3326592.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSAIDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASCDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
     gene            complement(1038..1916)
                     /locus_tag="ACHDOB_001689"
     CDS             complement(1038..1916)
                     /locus_tag="ACHDOB_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF234 domain-containing protein"
                     /protein_id="HFN3326593.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDIFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSSHFTRFFFYFLKPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYY
                     QDENLCFVGEVKFKNKKICKNILNLLKSKAKSLNLAPNYYIIISKNGFSKEFDKICEQ
                     NLLLLDLNDFKILLEE"
     gene            1952..>2844
                     /locus_tag="ACHDOB_001690"
     CDS             1952..>2844
                     /locus_tag="ACHDOB_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HFN3326594.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQTYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISKMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKI"
BASE COUNT          998 a          457 c          356 g         1033 t
ORIGIN      
        1 aaagaaaata tttatcacac caaaggcaag gtaaaataaa aattcttagg atcgctttga
       61 aaacttaact ctcccttatg agcgtttatg atttctttag aaagagacaa gccaagccca
      121 ttgcctttaa gttttgttgt tttaaaagct tcaaaaacca atttctcatc ttttatttca
      181 caaccattat catacactct gatgcatatt ttttcattat cacaacttgc taaaatttta
      241 atcataggct tttcacattc gctttcttct atcgcatcaa tagcattata aatcaaattt
      301 tgcaaaacca aaccaagaag agctttatca gcacaaatct gcttatccaa aaaagatatt
      361 tcaaagtcta tttgagaagt gaaattataa gagttaatgg cactttcaca ctcttctttt
      421 aactctaaaa gattaaaatt taaagcattg atgtgcacac ccttagtaaa aagtaaagtt
      481 gaatttacga tacgctctac tctagcaata gccttttgga tttcaagaac tatatgctta
      541 tttttaagct cactacgagc aaaaagagtt gaagcaagta aagatataga tccaatagga
      601 tttcttatct catgtgccaa atgagccgct acactaccca tacttgcaag cctttcattg
      661 cgtttttcat cgctaatatc tatagctgaa actatagttt tttcattatg tgctatgatt
      721 tttaccgcat aaaacctacc ttcaaattca agctcatcac gaattttatc cagactaatg
      781 atactaagta attttggatt tttcaaggct tcttgatttt gtaaaataat atttttttct
      841 ttatctaaaa tccaaagtgc actaggcaac acctctataa tctcatcaac cattgcgcgt
      901 aaggaattat agttttcatt taaagttttg tattcatttt ctattacata agtttgttct
      961 ataagacttt ctaagccttt ttgtagggtt tctttttcat ttgagtctaa actttttaaa
     1021 atactttcat tcatttatca ttcctctaat aaaatcttaa aatcattcaa atcaagtaaa
     1081 agcaaattct gttcacatat tttatcaaat tccttgctaa aaccattttt tgagattata
     1141 atgtaataat ttggagccaa atttaaagac tttgcttttg attttaaaag atttaaaata
     1201 tttttacaaa tttttttatt tttaaattta acctctccga caaaacacaa attttcatct
     1261 tgataataaa gatcaagttc taaattctta tcccagtaac tttgcactcc attgatattg
     1321 aattttttct caagcaattc tctagaaagc tgttcaaaac aaaaactttg ataaagttca
     1381 aatttttcct taatacattc taaaacttct ttataacgat tttgcaaaat aagcttttca
     1441 ttgggcttta aaaaataaaa aaagaaacga gtaaaatggc tgctaaatat aatcttatct
     1501 tggacaacat aagatcttag ttcttttttg attttttgtc ttttatcttt tattttttta
     1561 gcttccttac tatactcaag ttttattata cctgtttcta aaagatattt aagtgtagat
     1621 aaagctttaa aatgttgaat ttttctattg atagaaaaac gcttacgatt gtttttagct
     1681 agcaaagtaa gagcgtaaga acttgtttca tccaaggcaa aataactttt aatttttaga
     1741 taatcatcaa gcaaaattcg ctctatattt gtaaatatat cgtcttcaaa atttaaaatg
     1801 tttaattttt caaaaccttc aaacacacta taaaaatcaa aaagcttgct taaagacaaa
     1861 ttcttatgca aatctacaaa gttcttaaat tttatatttt tccttttata aagcattttt
     1921 atagtataat tttagcaaat ttttataagg attgtatttg caaatttcag atttaaaaaa
     1981 agaattgatc ttaaaaaaag gtattttgca ttttgacttc acagcaagtg ctttagctct
     2041 aaaatgcgta gaaaaagaaa tttcaaaaat tctcccaacc tatgcaaata cacattctga
     2101 tagctcttta aattctttta aaactcaaca aacttacgaa caagcaagaa aagatataaa
     2161 aaaaagttta tcattagatg aaaattttgc ccttatagct tgcggaacag gatcaagcag
     2221 tgctattaaa aaatttcaag aattgatcgg catttacatt ccccctcttg taaaagaaag
     2281 atattttacg caaatcgata aaaatacctt acctttagtt atcgtagggc cttatgagca
     2341 tcattctaat gaactttcat ttcgagaagg cttatgtgaa tgtattagaa ttcccttaga
     2401 taaaaatgga gaaattgatt ttgattttct agaaaaaact ttacaaaaaa ataaaaaaag
     2461 aaaaataatc gctagctttt ctttagcttc aaatgttact gggatattaa gtgattacaa
     2521 acgcatttct aaaatggttc gtaaatttaa agggatagtt gcttttgatg catctagttt
     2581 cattccctat aaaaacatat cttgtcaata ctatgatgcg ttgtttataa gttctcataa
     2641 attaatcggt ggtattggcg gttctggact tttagccatc aaaaaagatc tttgtggaaa
     2701 caagcctagc tttgcagcag gtggaactgt gggctatgtt tctcgcactt cacaatgcta
     2761 cctttgtaat gaagaagctt tagaagaagg aggaacacct ggaattttac aactcattcg
     2821 cgctagctta gcttttaaaa tcaa
//
LOCUS       DAZAND010000132         2792 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.134, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000132 DAZAND010000000
VERSION     DAZAND010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.134"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..1188)
                     /locus_tag="ACHDOB_001691"
     CDS             complement(<1..1188)
                     /locus_tag="ACHDOB_001691"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HFN3326595.1"
                     /translation="MKFESLSPENISIIFLSLGVLLFSSFVFGKLFTLFKAPKVIGEI
                     FGGFVLGASGLYIFAPDLLTDIFNGFNEQGKILNIFYQLGLIFLMFIAGFNTQISFEK
                     QNIKIISTLFLGGTFLSAGVGYFFIDYFKESFIGIKGNDLSFDLVFLIAIAVTSIPVI
                     SKIFFDIGVIKTRFASIVLTTSTIQDLFLWILLNITINAATNQDLTLMSNLKTAFLTL
                     FLFIAVKVISHFFEKISFRMSTIDFFTLSFVVLFLSIAFLNMIHINPMYTSFLVGFLI
                     KNILNNHQELREKVNGISDMAFSFFIPIYFALIGIQLNIMHEFSFNMFIFFLILACLL
                     KFLGCYIGLNFVKISNISRINFAITMNARGGPGIVLASVAYYYQIINVSFFTTLILTV
                     LISS"
     gene            complement(1198..2157)
                     /locus_tag="ACHDOB_001692"
     CDS             complement(1198..2157)
                     /locus_tag="ACHDOB_001692"
                     /inference="COORDINATES: protein motif:HMM:NF012449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HFN3326596.1"
                     /translation="MKKLILTTGPSLGGKINLNQIHQDKFIYRINGAHGDIESIKNTI
                     INLRKQKADIDILIDLPGNKIRTSGISEAIQVEKDKDFSLKIDQFNYKEFYKLVKPGM
                     EVYANDSVFLFIVKEVNDKEIIFTSKSTGLLLNNKGMHVRNLHDNIPFLFEKDKELIK
                     LCNEFDIAYVGASFVRKASDIQELKQVLHSNTKIISKIETLEAVNNLYSILQEVEYIL
                     IDRGDLSTEIGIEKIPRFQNYIVEMAHHNAIKVFLATQILKNMEEKPIPTIAEIDDLY
                     NIAKSGVFGVQLSEETAVGHYVEECVKILNLIQDEINNEKIIL"
     gene            complement(2168..>2792)
                     /gene="sat"
                     /locus_tag="ACHDOB_001693"
     CDS             complement(2168..>2792)
                     /gene="sat"
                     /locus_tag="ACHDOB_001693"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: protein motif:HMM:NF013875.4"
                     /note="ATP sulfurylase; ATPS; converts ATP and sulfate to
                     5'phosphosulfate and pyrophosphate; in some organisms this
                     enzyme is involved in the incorporation of inorganic
                     sulfate while in others it is involved in the production
                     of ATP in the reverse direction; the enzyme from Thermus
                     thermophilus is dimeric and binds a zinc ion that is
                     coordinated by cysteine and histidine residues that are
                     not found in all related proteins but is found in some
                     thermophilic organisms; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HFN3326597.1"
                     /translation="DTDIKTIVGFQTRNPIHRAHEHLQRIALEICDALFINPLTGWKK
                     QGDFTEAAVMSAYKTMFDEFYPKDRVYIQGLQTAMRYAGPKEAIFHALLRRNMGCTHF
                     IIGRDHAGVGDYYGIYEAQKLAKDLSMRYDLGIDFLLLKEPYYCSKCQKIVSEKNCAH
                     YKEHRIAISGTQIRKDLSEGKIPSELMMRSEISASILALGRENIFID"
BASE COUNT         1077 a          457 c          290 g          968 t
ORIGIN      
        1 cgaagaaatt aaaacagtta aaataagtgt tgtaaaaaaa cttacattaa taatctgata
       61 ataataggca acactcgcta aaactattcc tgggccacct ctagcattca tagtaattgc
      121 aaaattaatt cttgaaatat tagaaatttt aacaaaattt aatcctatat aacaacctaa
      181 aaatttcaat aaacacgcaa gaattaagaa gaatataaac atgttaaaag aaaattcatg
      241 cataatattt aattgaatac cgattaaagc aaaataaata ggaataaaaa atgaaaaagc
      301 catatctgaa ataccgttaa ctttttctct taattcttga tgattattta aaatattttt
      361 tattaaaaaa cctacaagaa atgaagtata catagggttg atatgaatca tatttaaaaa
      421 agctatagat aaaaataaca caacaaagct taaagtaaaa aaatcaattg tactcatgcg
      481 aaaagaaatt ttttcaaaga aatgagaaat taccttcaca gctataaata aaaataaagt
      541 aagaaaagcg gttttaagat tgctcattaa agttaaatct tgatttgttg cggcattaat
      601 agtaatattt agtaaaatcc ataaaaacaa atcttgtatt gttgaagtgg ttaaaactat
      661 gcttgcaaat cttgttttaa tcactcctat atcaaaaaat atttttgata tcacaggtat
      721 agaagttaca gcaatggcta ttaaaaaaac caaatcaaaa gataaatcat tcccctttat
      781 tccaataaaa ctttctttaa aataatcaat aaaaaaatat cccacaccag cagataaaaa
      841 agtaccacct aaaaataaag tagaaataat cttaatattt tgtttttcaa aactaatttg
      901 cgtattaaac cctgcaataa acattaaaaa tatcaaacct aattgataaa aaatatttaa
      961 tatcttccct tgctcgttaa atccattaaa gatatctgta agtaaatcag gagcaaaaat
     1021 atacaaacca cttgccccca aaacaaaacc accaaaaatt tcaccaatta cttttggggc
     1081 tttaaataaa gtaaataatt ttccaaaaac aaaagaagaa aataataaaa ctcctaaaga
     1141 taaaaatata atactaatat tctcaggact taaagattca aatttcatat tgctttctta
     1201 aagaatgatt ttttcattat tgatttcatc ttgtattaaa tttaaaatct taacacattc
     1261 ttctacatag tgtcctacag ctgtttcttc agaaagttgc acaccaaaaa ctccactttt
     1321 tgcgatatta tataaatcat caatttctgc aatagtagga atgggttttt cttccatatt
     1381 ttttaaaatt tgtgtagcta aaaatacttt aattgcatta tgatgtgcca tttctacaat
     1441 ataattttga aaacgtggaa ttttttctat accaatttct gtggataaat ctcctctatc
     1501 aattaaaata tattctactt cttgcaaaat actgtataaa ttattcactg cttctaaagt
     1561 ttcaatttta gaaataatct tagtatttga atgaagcact tgttttaatt cttgtatatc
     1621 acttgctttt cttacaaaag aagctcctac ataagctata tcaaactcat tgcaaagctt
     1681 tataagttcc ttgtcttttt caaataaaaa aggaatatta tcatgcaaat ttcttacatg
     1741 cataccctta ttatttaaaa gcaatcctgt gcttttagat gtaaatataa tttctttatc
     1801 gttaacttct tttacaataa ataaaaacac actatcattt gcataaacct ccatacctgg
     1861 tttaacaagc ttataaaatt ctttatagtt aaattgatca atttttaaag aaaaatcctt
     1921 atctttttct acttgaatag cttcgctaat ccctgaagtt ctaattttat ttcctggcaa
     1981 atcaatcaaa atatcaatat cagctttttg ttttcttaaa ttaataatag tatttttaat
     2041 actctctata tctccatgag ctccattgat tctataaata aatttatctt gatgaatttg
     2101 attaagattt atctttccac ctaaactagg acctgttgtt aaaataagct tcttcattat
     2161 caatccttta atcaataaaa atattttctc tacctaaagc aagtatacta gcagaaattt
     2221 ctgaacgcat cataagttcg ctaggaattt taccctcgct taaatccttt ctaatttgcg
     2281 taccactaat tgcaattcta tgttctttat aatgtgcaca atttttttca ctcacaattt
     2341 tttgacattt agaacaataa taaggttctt ttaaaagtaa aaaatctata cctaaatcat
     2401 aacgcattga tagatcttta gccaactttt gcgcctcgta aattccgtaa taatctccca
     2461 ctcccgcatg atctctacca atgataaaat gggtacaacc catatttctt ctaagtaaag
     2521 catgaaaaat agcttcttta ggacctgcat aacgcatagc agtttgtaaa ccttgaatat
     2581 aaactctatc tttaggataa aactcatcaa acatagtttt ataagcactc atcactgctg
     2641 cttcagtaaa atctccttgc tttttccagc ctgttagagg attaataaac aaagcatcgc
     2701 aaatttcaag cgcaattctt tgcaaatgtt catgagctct gtggatagga tttcttgttt
     2761 gaaaacccac tatagtctta atatcagtat ca
//
LOCUS       DAZAND010000133         2772 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.135, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000133 DAZAND010000000
VERSION     DAZAND010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2772
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.135"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..172)
                     /locus_tag="ACHDOB_001694"
     CDS             complement(<1..172)
                     /locus_tag="ACHDOB_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326598.1"
                     /translation="MIRNFFIGMSFLGILFLAFYALYDKKKESVFSLNTCQPLTCDLN
                     LQDCVFSFNKKNI"
     gene            329..1306
                     /locus_tag="ACHDOB_001695"
     CDS             329..1306
                     /locus_tag="ACHDOB_001695"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase family protein"
                     /protein_id="HFN3326599.1"
                     /translation="MLKRLALLITLSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAQVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNTYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1307..2293
                     /gene="alr"
                     /locus_tag="ACHDOB_001696"
     CDS             1307..2293
                     /gene="alr"
                     /locus_tag="ACHDOB_001696"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HFN3326600.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAQEIEEFFENILILSHRPHGNENSRFIYALNDISQVKKY
                     KQDIKIHLKIDTGMHRNGICVENLEHAIDLIRSSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGKGELVLGNGKV
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2296..2763
                     /locus_tag="ACHDOB_001697"
     CDS             2296..2763
                     /locus_tag="ACHDOB_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HFN3326601.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFSNFVS"
BASE COUNT         1045 a          306 c          474 g          947 t
ORIGIN      
        1 caatattttt tttattaaaa gaaaaaacac aatcttgtaa atttaagtca caagttagag
       61 gttggcatgt atttaagcta aatacacttt ctttcttttt atcatataat gcataaaaag
      121 ctaaaaacaa aatgcctaaa aaagacattc ctataaaaaa atttcttatc attatagaca
      181 accttttaaa acaagccttt atgatttata aaaattatat cataaataag gccgcattgt
      241 taatataatt aatatttttt aagaaaaaaa atattataat cacaaacatt tttgacttaa
      301 aaaattttga aatacctaag gaaaaacatt gttaaaacga cttgctttat taattacact
      361 ttcttcattg atgttacatg cctcagatct tgttaaaatt tatcttaatc aagggttaga
      421 tgctgttggt gtagcgattg aaaaagaatt aactcaaaag gatttttggt taagtgaaat
      481 aggagataaa aatatttcac ttggatatta tgatgataat gttgctatcg tgcttacaaa
      541 taaaacagat aaaattctcc gtgtttattc ttatgaggac ggaaaaataa gaaaagattt
      601 tgaacaaaaa gaaataataa ctggattaat gggcgataaa aaaatagaag gagatttgaa
      661 aacgccagta ggtttttatg agttaggccg taagtttaat ccaggtgatc cttattatgg
      721 tccctttgct tttgccacaa cttatccaaa tttacttgat aaagtacaag gaaaaacagg
      781 tggtggtatt tggatccatg gctatccttt agatggttct agacttgatg aatttaaaac
      841 aagagggtgt attgctttat ttaataataa tttagagaaa tttgcacaag ttgtacaaga
      901 taaaaaagtt tttgttatga cagaagaaaa agaaaaaatt agagctaaaa aggatcaaat
      961 agctagttta ttggctgatc tttttacatg gaaactagct tggacaaata gtgacactaa
     1021 tacctattta agtttttatg atgagcaaga atttaaacgt tttgataaaa tgaaatttga
     1081 acagtttgct tccatgaaaa aatctatttt ttctcgtaaa gaagataaaa agattaaatt
     1141 ttcagatatt aatatcagcc cttatccgaa tttagaaaat gaaactatgt atagaatttc
     1201 attttatgag gattattaca ctaaaaacta tcagtttaga ggcgataaaa ttttatacgt
     1261 taagatagat agtaaaggta aaatgaaaat tttagcagag caataaatgt ctttaataaa
     1321 aattgatcaa aaagcttatg aatataattt aagacatatt gctaaaaaaa tagggagttt
     1381 tcaaagatta atttgcgttt ttaaagataa tgcatatgga catggagcta agcttttagc
     1441 tccattagcc aaaaatttag gagtttcttt tgttgctgtt aagagtgaag aagaagctca
     1501 agaaatcgaa gaattttttg agaatatatt aatactatca catcgtcctc atggtaatga
     1561 aaattctcga tttatttatg ctttaaatga tatttcccaa gtaaaaaaat acaagcaaga
     1621 tataaaaata catctaaaaa tagatacagg catgcatcgc aatggaattt gtgtagaaaa
     1681 tttagaacat gctatagatc ttattcgaag tagtgattta aaacttactg gaatgtttac
     1741 acattttgct agtgcagatg aaatggatgg aagttttttt gttcaaaaag aaaattttca
     1801 aaaagctaaa aagatagtaa aaaaatattt ttcaaattta ttatttcatt cgcataattc
     1861 tgcagcatta tttagaggga aaattcccga agatgaatat tgtagagttg ggcttgttca
     1921 atttggatat ggggattcaa atttaaaaag agttttaagc ttgtatgctc atagattaag
     1981 tcaaaggatt ttgcaaaaag gacagagtat aggatatgga ggcattttta ctgctgcaaa
     2041 ggatatggaa gtagcaactt atgatttggg ttatgctgat ggtcttttcc gttacaatgg
     2101 aaaaggggag ttggtgcttg gaaatggaaa agtaatgctt ggaaagatgt caatggatag
     2161 tttttcttgt gaaaattctg gtgaggaaat ttgcgtgttt aaagatgctg atatttgggc
     2221 tgattttttt catactatta actatgaaat tttagtaaaa ttaaatccta acattcaaag
     2281 agttctggta taaatatgtt taatatagtt ttagttcacc ctagaatacc gcaaaataca
     2341 ggtagtatag gtagaatgtg ttttaatgct ggttttaaac ttcatatcat taaaccaact
     2401 gtttttgata tttctcaaaa ggctgttaga agggcagggc ttgattactg ggataaatta
     2461 gaacccatta tttgggagaa tcttgaagaa tttttgaatg aaaatatgat ttataaaaat
     2521 cgcttttttt tcgcaacaac caagagtcaa aaagcttatt ttgatgcaga atttcagaaa
     2581 aatgatttct tattctttgg aagtgagagt tatggcttac ctatggaatt aatgcaatta
     2641 aattgggaaa atgctataac tatacctatg aaatcttatg gaagaagttt aaatttagct
     2701 acaagcgttg gtataatctc ttatgaagct ttaagacaaa attttagcaa ttttgtttct
     2761 taaaagtttc aa
//
LOCUS       DAZAND010000134         2665 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.136, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000134 DAZAND010000000
VERSION     DAZAND010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2665
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.136"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1019
                     /locus_tag="ACHDOB_001698"
     CDS             <1..1019
                     /locus_tag="ACHDOB_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFN3326602.1"
                     /translation="LSFKTFDISNVQRSKAKKVQGKKYEIFLNENEQSLITPKVSFKE
                     ILRYYYLYPKNAIPSFKLPFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPVFNT
                     HASPISFINKAFKNTPVYNVNDFNEIFAVIITHSHFDHLDAKSIKALKEKARFFITPL
                     KVGNYLKSYGVSEKKIIELDWWSGVEFGDLKIIATPAQHSSSRGDGKNKTLWASFVME
                     FLSVDKRVFFSADGGYFTHFKKIGEYFGSFDLACLESGQFNIAWPYSHSFPDQILKEA
                     KDLNAKAVMPIHWGRFLVGTHAWNEVIKFLYENLDLPLITPKMGEAYEIGAKFKQDFW
                     WKEG"
     gene            1089..1430
                     /locus_tag="ACHDOB_001699"
     CDS             1089..1430
                     /locus_tag="ACHDOB_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HFN3326603.1"
                     /translation="MKIIQWNRAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNVLDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(1480..2649)
                     /locus_tag="ACHDOB_001700"
     CDS             complement(1480..2649)
                     /locus_tag="ACHDOB_001700"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HFN3326604.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QIIKNAAISAIEKGCGKYTAVAGIPEVLKAIQIKFKKDNNLDYETSEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFVEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSEDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDKDIEKMRQAFEKRRNLALDILKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMNFCQKLLEQEKVAVVPGVGFGMDGYFRLSYATSDELIKKGLERIANFIKNYK"
BASE COUNT          866 a          389 c          457 g          953 t
ORIGIN      
        1 atttatcatt taaaaccttt gatatttcta atgtgcaacg atcaaaagct aaaaaagtgc
       61 agggtaaaaa atatgaaatt tttcttaatg aaaatgagca aagtcttata actcctaaag
      121 tgtcttttaa agaaattttg aggtattatt atctttatcc aaaaaatgcc attccttctt
      181 ttaaattacc ttttttcaag cctgatttga gtggttttag cactccgcat attacttggc
      241 ttggacattc ttcgcttttt ataagtttta aagaatataa aattttgatt gatcctgttt
      301 ttaacactca tgcttcgcct atttctttta tcaataaggc ttttaaaaat actcctgttt
      361 ataatgtaaa tgattttaat gaaatttttg ctgtgattat cacgcattcg cattttgatc
      421 atttagatgc taagagtata aaagctttaa aagaaaaagc acgatttttt atcacacctt
      481 taaaagtggg aaattatcta aaaagctatg gggtgagtga gaaaaaaatc atagagcttg
      541 attggtggag tggagtagaa tttggtgatt taaaaatcat tgcaacacct gcacagcaca
      601 gttcaagtag aggagatggt aaaaacaaaa ccctttgggc ttcttttgtg atggaatttt
      661 taagtgtaga taagagagtg ttttttagtg cagatggagg atattttaca cattttaaaa
      721 aaataggtga atattttgga agttttgatc tagcttgtct tgaaagcgga cagtttaata
      781 tcgcttggcc atattcacac tcttttcctg atcaaatttt aaaagaagcg aaagatctta
      841 atgcaaaggc tgtcatgcct atacattggg ggagattttt agtaggaact cacgcgtgga
      901 atgaagtgat aaaatttctt tatgaaaatt tagatttacc ccttatcaca ccaaaaatgg
      961 gcgaggctta tgaaataggg gctaaattta aacaggattt ttggtggaaa gaaggataaa
     1021 ttaacacaag tttataatct atattttggt ttttgctata gttttataaa actaaaaaag
     1081 gagattttgt gaaaatcatt caatggaata gggcggaatt tagcccaaaa gaagtgaaaa
     1141 tcaatgtttt aattgacaat gaaaaaggta aagaaattca aattttatta gctaaagata
     1201 gtgtgatgaa agagcataaa gctccttttg ctatacatgt tcaagtttta agtggtaaaa
     1261 tttggtttga agtggaaaag gaaaaatttg aattaaatgt tttagatatg ataagcctag
     1321 aggcaaatgt agcgcattct ttaggtggat tagaaaattc tataataaga ttgagtttaa
     1381 ataaatcaga tagtgttcaa agggtaaatg ctgtgcttaa aaagccttga ttttataagg
     1441 ttttaatttg cctaaataat tctaggcttt aacctagaat tatttatagt ttttaatgaa
     1501 atttgctatt ctttctaaac cttttttgat aagctcatcg cttgtggcat aagaaagtct
     1561 gaagtatcca tccattccaa aacctacacc tggaacaacg gcaacttttt cttgttcaag
     1621 taatttttga caaaaattca tagaatcttt ttctattttt tgtatattta caaaaagata
     1681 aaaagcacct tctggtttat aaacactgat atttgggatt tgtttaagta tgtctaaggc
     1741 taagttacgg cgtttttcaa aggcttgacg cattttttct atatctttat cacattctcc
     1801 atttaaagca ggaatggctg catgttgagt gatggaacaa atatttgaag tgctttgtcc
     1861 ttgaagtctt ttaacggctg aaattagggc tttatttttg cttgccatat agccaaaacg
     1921 ccatcctggc atagccccgc atttactaag cccgttaata gtcacagtgc gttttaaagc
     1981 atcttcgctt acacttgcaa aagctacaaa atcaaaacca tcatagcgaa gtttttcata
     2041 catttcatca cttaaaacag tgatttgtgt tccttctaaa acttttgcaa tttgagttaa
     2101 ttcttcttta gaataaatcg accccacagg atttgaagga gaatttaaca tcaaaacctt
     2161 ggttttagct gtgatagctt tttttagttg ttcagcggta attttaaagc cattttcttc
     2221 taagccttct acaaatacag gttttccacc tgcaaatttt accatttcag gatagcttac
     2281 ccagtaagga ctagggataa tcacttcatc atctttttct actaaacatt ctatacattc
     2341 aaaaagagag tgttttgcgc ctacattggt gataatttcg cttgtttcat aatcaagatt
     2401 attatctttt ttaaatttga tttgaatagc ttttaatact tcaggaattc ccgcaacagc
     2461 agtgtatttt ccacatcctt tttcaatagc acttatagcg gcatttttga tgatttgtgg
     2521 tgtgtcaaaa tcaggttcgc ctgctgaaaa actaatgata tcttcgcctt tagctttaag
     2581 ttcattggca agtgcagtga tggctaaagt gatagattct tctaaaactt gagatctttt
     2641 tgtaagcatt tttcaatcct taata
//
LOCUS       DAZAND010000135         2529 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.137, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000135 DAZAND010000000
VERSION     DAZAND010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.137"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..750
                     /locus_tag="ACHDOB_001701"
     CDS             <1..750
                     /locus_tag="ACHDOB_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002923456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HFN3326605.1"
                     /translation="FIYIYAFGIDVCERRDIEMSAYIEKHAVGYKNKNFNLPEEKLYK
                     KSFSDCYDKKNKEACLYIYNNFAIDENFKIESNIFNLITIMTYVGLTLDIDKDKKYKE
                     INRLIALDSWKKASELIDFVLSKTNDTKTIEGLKLLKKMSDFEINRAYACPLYYNDKL
                     QSDAIDMPCACKKNTALLIKPDTIKRAFLNLKLLCDKYKDSVSCGVVGGLYENGKGVR
                     INFKQAKKYYGLACDGGYQLGCDGYKRFMGY"
     gene            complement(762..1037)
                     /locus_tag="ACHDOB_001702"
     CDS             complement(762..1037)
                     /locus_tag="ACHDOB_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326606.1"
                     /translation="MACIENAYDLCKHFNISEDCEIKIHNFFNTHKDNFLKPCTGIFY
                     GIKQQNKIILERENEYPPGIFCVKTNYLKIVYKKENLEIINIDWINS"
     gene            complement(1024..1527)
                     /locus_tag="ACHDOB_001703"
     CDS             complement(1024..1527)
                     /locus_tag="ACHDOB_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002923453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Panacea domain-containing protein"
                     /protein_id="HFN3326607.1"
                     /translation="MKKIENIIIYIINYFQTNYAPADLGKVKLNKILWFADRAFMYKN
                     YASLTQTSYIKNPQGPVVKKLENILTSLEKNEFIKSIKVNKGEYQQQSFLCLKEPNLD
                     NFTAKEISILDETINKFALKTAKELSEMSHDECWEKTKNGDTMPIESVFLQDIIPATK
                     EDINGLH"
     gene            complement(1593..2255)
                     /locus_tag="ACHDOB_001704"
     CDS             complement(1593..2255)
                     /locus_tag="ACHDOB_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HFN3326608.1"
                     /translation="MKKLILLPLLSTLAFADYTQYKPSEDFAKYFTKQNCSQVLDKFY
                     YLNCYDYNYKGTKAVAYKLEAENLKGEQIKKRPRFEDDTNIPKKYRTTWSDYKNSGYD
                     RGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVASKLGSLEVL
                     NLVNYDNNPQRIRNQIAIPSSYTKILKGENFKECYQVPNHKVENENIKNYKVNCDILT
                     GS"
     gene            complement(2275..>2529)
                     /locus_tag="ACHDOB_001705"
     CDS             complement(2275..>2529)
                     /locus_tag="ACHDOB_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326609.1"
                     /translation="FGVTAILQCLSFFMIGYFYVFNFSPNIIHIASYYQNNTICSKVS
                     PNAYIHLLGDNKVSISPFNEKFVFHLDKSVEYKFITKDCN"
BASE COUNT          860 a          317 c          363 g          989 t
ORIGIN      
        1 tttatatata tttacgcctt tgggattgat gtatgtgagc gaagagatat tgaaatgtct
       61 gcatatatag aaaaacacgc tgttggttat aaaaacaaaa attttaacct tccagaagaa
      121 aaactataca aaaaatcttt tagtgattgc tatgataaaa agaataaaga agcttgtttg
      181 tatatttata ataattttgc tatagatgaa aattttaaaa ttgagagcaa tatatttaat
      241 ttgattacaa taatgactta tgttggttta actcttgata tagacaaaga taaaaagtat
      301 aaagaaatta atcgattgat agctttagat agttggaaaa aagcgtcaga attgatagat
      361 tttgttttga gtaaaaccaa tgatacaaaa actatagagg ggctaaaatt actaaaaaag
      421 atgagtgatt ttgaaattaa tcgggcttat gcgtgtcctt tgtattataa tgataaatta
      481 caatctgatg caatagacat gccttgtgcc tgtaaaaaaa atactgcact tttaataaaa
      541 ccagatacta taaaacgagc ttttttaaat ttaaaacttt tatgtgataa atacaaagat
      601 agcgtgagtt gtggagttgt tggtggactt tatgagaatg gaaaaggtgt aaggataaat
      661 tttaaacaag caaaaaaata ttatggttta gcttgtgatg gcggttatca acttggttgc
      721 gatggatata aaaggtttat ggggtattga gaggttaaga tttatgaatt tatccagtct
      781 atattaatta tttcaagatt ttctttttta taaacaattt tcaaataatt cgtctttaca
      841 caaaaaatcc ctggaggata ttcgttttca cgttctaata ttattttatt ttgttgtttt
      901 atcccgtaaa aaataccagt acagggtttt aaaaaattat ccttatgagt attaaaaaaa
      961 ttgtgaattt ttatttcaca atcttcactt atattaaaat gcttacataa atcataagca
     1021 ttttcaatgc aagccattta tatcttcttt cgtagctggt ataatatctt gtaaaaatac
     1081 gctttcaata ggcatagtat cgccgttttt tgttttttcc cagcattcat catgagacat
     1141 ttctgaaagc tcttttgctg tttttaaggc gaatttattg atagtttcgt ctaaaatact
     1201 tatttctttt gcagtaaaat tatctaaatt aggctctttt aaacacaaga aagattgttg
     1261 ttgatattcg cctttattta cttttatgct tttgataaac tcattttttt ctaaactagt
     1321 taaaatgttt tctaattttt taactaccgg tccttgtgga ttttttatat aagatgtttg
     1381 agttagagat gcgtaatttt tatacataaa ggctctgtct gcaaaccata aaattttatt
     1441 taattttact tttccaagat cagctggagc atagttcgtt tgaaagtaat ttatgatata
     1501 aataattata ttttctattt ttttcatctt atactccttt ctaaaattta taaaagcata
     1561 atatacttaa actaaaaaat cgtttaagat tgtcaactgc cggttaaaat atcacaatta
     1621 accttataat tttttatatt ctcattttct actttatgat ttggcacttg ataacattct
     1681 ttaaaattct cgccttttaa aatcttagtg taagagcttg gaatggcaat ttgatttctt
     1741 attctttgtg gattattatc ataattaacc aaatttaaaa cttctaaact tccaagcttt
     1801 gaagctactt gtctttctct tttttcaatc ttgttccaaa ccctttgatt gatttgtgga
     1861 ttttgtggag taatattact cattaagaat gtgcttcttt gagcttgagt tgtttttctc
     1921 attgaggcat tagaaagagt gtgtcctcta tcataaccac tatttttata atcactccaa
     1981 gtggtgcgat attttttagg gatatttgta tcatcttcaa atcgtgggcg ttttttaatt
     2041 tgttcgcctt ttaaattttc cgcttctaat ttataagcta cagctttagt gcctttataa
     2101 ttataatcat aacaatttag ataataaaac ttatctaaaa cttgagagca gttttgttta
     2161 gtaaaatact ttgcaaaatc ttcactcggt ttatattgtg tgtaatcagc aaaagctaga
     2221 gtggataaca atggcaaaag tatgagtttt ttcactggta atttcatctt tattttaatt
     2281 acaatcttta gttataaatt tatattctac gcttttatct aaatgaaata caaatttttc
     2341 attaaatggt gatattgaaa ccttattatc tcccaataaa tgtatataag cattaggtga
     2401 aacttttgaa catattgtat tattttgata gtatgaagct atatgaataa tattaggtga
     2461 aaaattaaat acataaaaat aaccgatcat gaaaaaactc aaacactgca aaatagctgt
     2521 aactccaaa
//
LOCUS       DAZAND010000136         2514 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.138, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000136 DAZAND010000000
VERSION     DAZAND010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2514
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.138"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..243
                     /locus_tag="ACHDOB_001706"
     CDS             <1..243
                     /locus_tag="ACHDOB_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HFN3326610.1"
                     /translation="TTNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDF
                     AAESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ"
     gene            complement(275..2161)
                     /locus_tag="ACHDOB_001707"
     CDS             complement(275..2161)
                     /locus_tag="ACHDOB_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HFN3326611.1"
                     /translation="MREENNFNKNLKALSGFEYNNLRKKLKDLKELREFTFTQGKDNL
                     DINIIKKRNLKKMYQDPIKELEKNLEYFKDFARYPVLFFYGFGNGILYKILLQNQALK
                     RIIIFEKELELIFLALNFIDFSKDLSLGRLIILYHDDINLPKMDKVFRLIGDLFYRSY
                     NLHIANDFYEHYKEDILKLNKLNMQIIKNHNLMRGNDPKDAMQGIEQFVYNLPQMITH
                     SSYKELLSKRKGISDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIK
                     PDYVCMLERDEIVAECFNNDFKDFDKDIIFLVASLVHKKTISYLEKNKRKYILIIKGQ
                     PFARYLELDDYGYINAGMSVSHMAYELAENLGHNNIILIGQDLAYAKDGQTHSQGFIH
                     ANLHNGDYERDLDRFSTTAYGGNGKVQSSEIWTLFRQIFENFIAFSKSKTYNCTEGGA
                     RIESAIEKPFKELCENLLENKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNF
                     KKECKKVQKQIHNLTHGKNKLSLEQINQNIDKIKEKLSNKKYLFLQEILGPTLHHEQS
                     ILTPLYLKDIKDESDKQNKLFAWVYAHEALIENIIELLEAQDKRLKIAILPLQDFLEK
                     KKAL"
     gene            complement(2158..>2514)
                     /locus_tag="ACHDOB_001708"
     CDS             complement(2158..>2514)
                     /locus_tag="ACHDOB_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HFN3326612.1"
                     /translation="LQNSQKNEIFIQEIIQDIDKTKTQIDELYNTQKDLMQILGPLLT
                     QFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEE
                     KLKERKLDKWMERVRR"
BASE COUNT          808 a          364 c          342 g         1000 t
ORIGIN      
        1 acaacaaatc ttgatcaaat cagagccgac attggttcgg tgcaaaatca acttcaagtg
       61 actataaaca acattactgt tactcaagta aatgttaaag cagctgaatc aaccataaga
      121 gatgtagact ttgcagctga aagtgcaaat ttttctaaat ataacatcct tgcacagtca
      181 ggttcttatg ctatgagtca ggctaatgca gtgcagcaaa atgttttaaa acttcttcaa
      241 taatttctta gatgctttta tggcatctaa gcttttaaag tgcttttttc ttttctaaga
      301 agtcttgcaa aggtaaaata gcgattttaa gtcttttatc ttgagcttct aaaagttcta
      361 tgatattttc tatcaaagct tcgtgtgcat aaacccaagc aaaaagttta ttttgtttat
      421 cagattcatc tttgatatct ttaagatata aaggcgttaa tatactttgt tcatgatgca
      481 aagtagggcc taaaatttct tgcaaaaaga gatatttttt atttgaaagt ttttctttga
      541 ttttgtctat attttgattt atttgttcaa gagagagctt gttttttcca tgggtaagat
      601 tgtgaatttg tttttgaact tttttgcact cttttttaaa attcaaggat aaattcatat
      661 tttttttgat tttttgatag atttttaatc cgagttttac ttgttcttta gtatttaaaa
      721 cttgtaattt tttaaatttt ttatcttttt tattttcgag taaattttcg caaagttctt
      781 taaaaggttt ttctatagcg ctttctatcc tagcacctcc ttcagtgcaa ttataagttt
      841 tacttttgct aaaagcaatg aaattttcaa aaatttgtct aaaaagtgtc caaatttcag
      901 aactttgaac ttttccattt cctccataag ctgtagtgct aaatctatct aaatctcttt
      961 catagtctcc attgtgtaaa ttagcatgga tgaaaccttg agaatgtgtt tgcccatctt
     1021 tggcataagc taaatcttga cctatgagaa tgatgttgtt atgtcctaaa ttttcagcca
     1081 gttcgtaagc catatgagat acactcatac ccgcgttaat atatccataa tcgtctagct
     1141 ccaagtatct agcaaaaggc tggcctttta tgattaaaat gtattttctt ttattttttt
     1201 caagataaga aatggttttt ttatgcacca aagaagctac tagaaaaatg atgtctttat
     1261 caaaatcttt aaaatcatta ttaaaacatt cagctactat ttcatcgcgt tccaacatac
     1321 aaacataatc aggttttata ccatgtttag ctaaaatagg ataagaagaa tccgcacaaa
     1381 aaattgtagc tttactagca tactttttta acaaaggaag ttgtttagta agagatggtc
     1441 ctgtagaaac aatgatagct gtatcactta taccctttct tttagaaagt aattctttat
     1501 aactagaatg ggtaatcatt tgaggaagat tataaacaaa ttgttctata ccttgcatgg
     1561 catctttagg atcatttcca cgcataagat tgtgattttt gatgatttgc atgttgagtt
     1621 tattaagttt taaaatatct tctttatagt gttcataaaa atcattagca atgtgtaggt
     1681 tataagaacg ataaaacaaa tcccctatca aacgaaaaac tttatccatt ttaggaagat
     1741 taatatcatc atgatataaa ataatgagtc gccctaagct taaatctttg ctaaaatcta
     1801 tgaaatttaa ggccaaaaag ataagctcta attctttttc aaagatgatt attcttttaa
     1861 gtgcttgatt ttgaagtaga attttatata aaattccatt tccaaaacca taaaaaaaaa
     1921 gcacaggata gcgtgcaaaa tctttaaaat attctaaatt tttttcaagt tctttgatgg
     1981 gatcttgata catttttttt aaatttcttt tttttatgat attgatatca agattatctt
     2041 ttccttgagt gaaagtaaat tctctaagct cttttagatc tttaagtttt ttgcgtaagt
     2101 tgttatactc aaaaccgctc aaagctttta aatttttgtt aaaattattt tcttctctca
     2161 ccttctcacc ctttccatcc atttatctaa ttttctttct ttaagttttt cttctaaagg
     2221 aagtatattt ttaatcaaag cattttcttg tgctttaata tgtccataaa ctaattccat
     2281 aaattctaaa tgttctttta tccaaagaat acttttatta aaagcatctt ctttggtttt
     2341 aggatttaag acataaattc tagcaagatt aagttcaaat tgagttagta agggacctaa
     2401 aatttgcatc aaatcttttt gagtattgta aagttcatct atttgagttt tggttttatc
     2461 tatatcttga ataatttctt gaataaaaat ttcatttttt tgagaatttt gtaa
//
LOCUS       DAZAND010000137         2456 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.139, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000137 DAZAND010000000
VERSION     DAZAND010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.139"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(260..574)
                     /locus_tag="ACHDOB_001709"
     CDS             complement(260..574)
                     /locus_tag="ACHDOB_001709"
                     /inference="COORDINATES: protein motif:HMM:NF027409.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HFN3326613.1"
                     /translation="MKLEDIFVYMVLMIVSFIAGLVGIVTKNKLSKALNLKGKFTLFL
                     KGMLGSMFVAYLVFEIVNYLNFGIKLSVAVGGFAAYMGTDALLKIEQLVEKLINKKLD
                     KL"
     gene            complement(686..934)
                     /locus_tag="ACHDOB_001710"
     CDS             complement(686..934)
                     /locus_tag="ACHDOB_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326614.1"
                     /translation="MNDKMRIFLLIIPFVFLSACASKDILIKTEIKEVKVPIKCPLKL
                     PLKPLDKKDLESAKEISKYYLEVENIAKLCTGEKDERK"
     gene            complement(931..1272)
                     /locus_tag="ACHDOB_001711"
     CDS             complement(931..1272)
                     /locus_tag="ACHDOB_001711"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326615.1"
                     /translation="MFSFILSRFLSPSKIAFFVLIALCGFLYLKNNALALENENLKLK
                     ALHFSNEINVFKDKLAQQNKAIDKLKLDLKPKETLKEVLKVDKVFIKDKSCQSELKAY
                     KELFNILGAKK"
     gene            complement(1283..1672)
                     /locus_tag="ACHDOB_001712"
     CDS             complement(1283..1672)
                     /locus_tag="ACHDOB_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HFN3326616.1"
                     /translation="MKNNPYFKESEFKCKCGKCELPQNIPSDELIDLLCEIREHYNAP
                     VIINSGYRCKEHNAEVGGAPKSQHAIGSAADFVVKGVKTEEVHQYVLNTYGERSLGIA
                     IKHNFNDPYAGFVHLDTRGKKARWTYP"
     gene            complement(1662..2027)
                     /locus_tag="ACHDOB_001713"
     CDS             complement(1662..2027)
                     /locus_tag="ACHDOB_001713"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326617.1"
                     /translation="MTLDSVSKDLLKHFNAIGIANYEDVKQGGLYLMLESLTSINHHK
                     DSVNFSLIFSSHTFNKDKDSLIKKIDELRLKLFEFDTSKKLLSSIESGFISSSLFAYR
                     LKFNIEIFSKPEGEEENEK"
     gene            complement(2024..2377)
                     /locus_tag="ACHDOB_001714"
     CDS             complement(2024..2377)
                     /locus_tag="ACHDOB_001714"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326618.1"
                     /translation="MIALLSPPKMLALTLKELALMKRAQQNLANIDEITREVVAKAAK
                     DADDICKNKDIADFIWEDFAYIRIKIYLKIVLDDEDKILLDNALKRIENAPLIDKEGN
                     LSSLRLKIMQRKDRF"
BASE COUNT          796 a          402 c          279 g          979 t
ORIGIN      
        1 ttagagcttt cttttttgat aaaattgata tgatgaggaa aatattcaaa aacaaaagcc
       61 ttaaagcctt gttttaaaat cctatctctt cttaaatttt tatcttcttt atgattaaat
      121 tttaaagcct ttagccttga tttaatttca tttatttcta acttatccat ttttgctttc
      181 tttttatttt caaatatagt tttaaaaagc tttaaattgc gtttaaaacc ttttaaaata
      241 caagggtcaa tataaagcct tacaatttat ctaatttttt atttataagc ttttctacaa
      301 gttgctcaat tttaagcaat gcatctgtcc ccatataagc tgcaaaacca cccactgcaa
      361 cgctaagctt tatgccaaaa ttaagataat ttacaatttc aaaaactaga tatgctacaa
      421 acatagaacc tagcatacct tttaaaaaga gtgtaaattt accttttaaa ttaagagctt
      481 tgcttaattt attttttgtt acaattccta caagtccagc tataaagctt actatcatta
      541 aaaccatata tacaaatata tcttctaatt tcattgctag ttccttgtaa aaatttcaaa
      601 taaatataat aaagctaatg caaaagttga aaacaaaaga gctataagaa gatcttttgc
      661 aatgcttttt tgatttatca ttttattatt ttctttcatc tttctctcct gtgcaaagtt
      721 tggctatatt ttcaacttct aagtaatatt tagagatttc tttagcactt tctaagtctt
      781 ttttgtctaa aggctttaaa ggaagtttta aagggcattt aataggaact ttaacttctt
      841 tgatttcggt tttaatcaaa atatctttag aagcacaagc gcttaaaaaa acaaaaggta
      901 taattaatag gaaaattctc attttatcat tcactttttt gctcctaaaa tattaaataa
      961 ttctttataa gctttaagtt cactctggca gcttttatct ttaataaaaa ccttatccac
     1021 ttttaaaact tcttttaaag tctctttagg ctttaaatca agttttaatt tatcaatagc
     1081 tttattttgc tgggctaatt tatctttaaa aacattgatt tcattgctaa aatgcaaagc
     1141 tttaagtttt agattttcat tttctaaagc taaagcattg ttttttaaat ataaaaaacc
     1201 acaaagagca attagaacaa aaaaagctat ttttgaagga cttaaaaacc ttgataaaat
     1261 aaaactaaac acaatctttt ccttatggat aagtccatct tgcttttttg cctctagtgt
     1321 ctaaatgtac aaacccagca taaggatcat taaaattatg ctttatggca attcccaagc
     1381 tcctttcgcc ataggtgttt aaaacatatt gatgaacttc ttctgtttta actcctttaa
     1441 ccacaaagtc tgctgcactt cctatagcgt gttggctttt aggggctcca ccaacctctg
     1501 cattatgctc tttgcagcga tatccactat ttataataac aggagcattg taatgttctc
     1561 tgatttcaca aagaaggtct ataagctcat cacttggtat attttgaggc aattcacatt
     1621 tgccgcattt acatttaaat tcgctttctt taaaataagg gttatttttc attttcttct
     1681 tctccttctg gttttgaaaa aatttctata ttaaatttaa gcctataagc aaataaagaa
     1741 ctgcttataa aaccactttc gatactgctt aaaagctttt tgcttgtatc aaattcaaaa
     1801 agttttagtc ttaattcatc tattttttta atcaaagaat ctttatcttt attaaaagta
     1861 tgagaactaa aaatcaatga aaaattcaca ctatctttat gatgattaat acttgttagg
     1921 ctttcaagca ttagataaag tccgccttgt ttgacatctt cgtaatttgc tatgcctatc
     1981 gcattaaaat gctttaataa atctttgcta acactatcta aagtcaaaac ctgtcctttc
     2041 tttgcataat tttaagtctt aaagagctta aatttccttc tttatcaatc aaaggtgcat
     2101 tttcaattcg ttttaaagca ttatctagaa ggattttatc ttcatcatct aagacgattt
     2161 taagataaat ttttatgcga atgtatgcaa aatcctccca aataaaatca gcaatatctt
     2221 tatttttgca aatatcatct gcatcttttg ctgctttagc tactacttct cttgtaattt
     2281 catcgatatt tgctaagttt tgttgtgctc ttttcatcag tgctaactct tttaaagtaa
     2341 gagctagcat tttaggagga gaaagcaagg ctatcattta tcttgttttc ctttttttgt
     2401 ttctttgttt tttaaagact catttattat agtttcttca ttttcttcta aagtct
//
LOCUS       DAZAND010000138         2417 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.140, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000138 DAZAND010000000
VERSION     DAZAND010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.140"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..372
                     /locus_tag="ACHDOB_001715"
     CDS             <1..372
                     /locus_tag="ACHDOB_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HFN3326619.1"
                     /translation="LPFIKKRFGVLEPIDSFFKAKIDLAIVPVIGVDKNLKRIGHGQG
                     FYDRFFENLNYKPHIIFVQSIDALSQNNLTQKHDISGKLYINPYKKYYKKERKNDRIT
                     YRTYSRYSRTRYRIFSCKKNQ"
     gene            293..1846
                     /gene="rny"
                     /locus_tag="ACHDOB_001716"
     CDS             293..1846
                     /gene="rny"
                     /locus_tag="ACHDOB_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HFN3326620.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKHIQDLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            1855..2412
                     /locus_tag="ACHDOB_001717"
     CDS             1855..2412
                     /locus_tag="ACHDOB_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFN3326621.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKLALAMMKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFAAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLSKFSKK"
BASE COUNT          914 a          338 c          430 g          735 t
ORIGIN      
        1 ttgcctttta ttaaaaaaag gtttggggtt ttagagccta tagattcttt ttttaaagca
       61 aaaattgatt tagctattgt gcctgtaatt ggcgtcgata aaaatttaaa aagaatagga
      121 catgggcaag gtttttatga tagatttttt gaaaatttaa attacaaacc tcatataata
      181 tttgtccaaa gtatagatgc tttaagtcaa aataatctaa cacaaaagca tgatatttca
      241 ggaaaattat acataaaccc ttataaaaaa tattacaaga aagaaagaaa aaatgataga
      301 atcacttatc gcacttatag ccgctatagt cggactcggt ataggatatt tagttgcaaa
      361 aaaaatcaat gatgccaaat atgaaatttt cgtagaacaa gctaaagcca aagccaaagc
      421 tatagaatac gaagcggagc ttattttaaa agatgcaaaa aattcaattc ttaatgcaga
      481 attagaagtt aaaaaaaaat acgaagaaaa aactcacaaa attcaaaaag attttaatca
      541 aaaatttgat gatctttcta aaaaagaaca aaaacttcag caagaagaag aaaaactaaa
      601 agaagataaa gaataccttt gcaagtcaca aaaacacatt caagacttac aatctgatgt
      661 tgataaatta aaaaataaat atcaagaaaa acttgacgat gttttaaaaa ttttagaaca
      721 ttctacagga cttacgcaaa atgaagccaa agaaatcatt cttaaaaaag tagaagaaaa
      781 ttctcgcgag caaattgcac atatagtaag aaaatatgaa gaagaagcaa aaaatgaagc
      841 caaaagaaaa gctaacttca tcattgctca agctacttct cgttttgcag gtgaatttgc
      901 agctgaaaga cttatcaatg ttattaacat taaaaacgat gaacttaaag gacgtatcat
      961 tggtaaagaa gggcgcaatg ttaaaacctt agaaatggtt ttaggtgttg atattatcat
     1021 cgatgataca ccaggtgcta ttatagtaag ttgttttaat ctttatcgcc gtgctattgc
     1081 tacaaaagtt atagaacttt tagttgaaga tggcagaatt caacccgcgc gcatagaaga
     1141 aattcacgaa aaagtgtgta aagaatttga tagtgctatt ctagaagaag gcgaaaccat
     1201 agttatggat ctaggtttaa ataaaataca ccctgaaatt gtaaaactca taggaaaact
     1261 caaataccga gcaagctatg gacaaaacgc tttagcacat tctttggaag tggctcacct
     1321 tgcaggaatc attgctgctg agtgtggtgg ggatgagaat ttagcacgtc gtgcgggaat
     1381 tttacatgat ataggaaaag cattaaccca cgattttgaa ggatctcatg tggatttagg
     1441 tgcagaactt tgcaaacgct ataaagagca tcctgtagta atcaatgcta tttacgcaca
     1501 tcatggacac gaagaagcta caagcataga atcagcagct gtttgtgcag cagatacttt
     1561 aagtgctgca cgacctggag ctagaagaga agtattagaa gctttcttaa aaagagtcag
     1621 tgagctagaa gatatcgcta aaagtaaaga aggaattaaa aatgcctatg caatcaatgc
     1681 cggaagagaa attcgcgtca tagccaatgc tcagcttgtt aatgatgatg aaagtgtact
     1741 tttggctaag gaaatagcag ctgaaattca agaaaaaatg caatatcctg gtgaaattaa
     1801 agtcaatgtt atacgtgaac ttagagctgt agaatacgct aaataaggtt tattatgcaa
     1861 gatatgattg atactttaat aaaatatggt tatattgttt tattctttta ctctttaggg
     1921 ggcggaatgg ttggaatttt agccgcagga gttttaagtt ctcaaggaaa aatggatctt
     1981 agtttttgca ttgctcttgc ttttattgct aataccatag gttcaacttt gctttttata
     2041 cttggaaaat attacaaaaa agatattatg ccttatttta aaaaacaccg acgcaagcta
     2101 gcccttgcta tgatgaaaac aaaacaacac ggaattattt tacttgtaac tcaaaaattt
     2161 atttatggtt taaaaacttt cattcccata gctgcaggta tggcaaaata taattttatt
     2221 aaatttttta ttatcaatac tctagctagt ttggcatggg ctattgttct aggttttgct
     2281 gcttatactt ttgggtatgt tattgaagca atttttgata aactgagttt atatccttat
     2341 gccgctcctt tatttttatt atttttagct ggaataattt ggctttattt aagtaaattt
     2401 tctaaaaaat aatgtct
//
LOCUS       DAZAND010000139         2398 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.141, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000139 DAZAND010000000
VERSION     DAZAND010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.141"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            29..601
                     /locus_tag="ACHDOB_001718"
     CDS             29..601
                     /locus_tag="ACHDOB_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HFN3326622.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDATIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDTEIGGVVKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(606..1562)
                     /locus_tag="ACHDOB_001719"
     CDS             complement(606..1562)
                     /locus_tag="ACHDOB_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326623.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSRIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCLGKHHALILSKKNIASITTLIFIGVLSIILPRNT
                     TFNSAGLEFHFITLNFFKPVSELGFLFFLVGLILIFIKIFKTKEYYLIIAFFAAYFQF
                     LFQEGAGIRYFEFASLVFCFYLLNHAYKLAFFDILTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYAKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(1623..1832)
                     /locus_tag="ACHDOB_001720"
     CDS             complement(1623..1832)
                     /locus_tag="ACHDOB_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HFN3326624.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     ENSKKTHEELLHIEQTIQDEIAKFK"
     gene            1999..>2398
                     /locus_tag="ACHDOB_001721"
     CDS             1999..>2398
                     /locus_tag="ACHDOB_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326625.1"
                     /translation="MDFNSVLFSIGDKLPKDATSTVMLKKKFDRLNEDKQKEVVAQLP
                     MIKLKSPALVFWVGTFLFGAFGVGRFMIGDWVLGLIRLGITIVAMICGVLMITYSALG
                     IIYGLLWLVNWIWWIVDMFLVGKKLRKQNFE"
BASE COUNT          923 a          275 c          364 g          836 t
ORIGIN      
        1 ttgaaaatta ctataaaaaa ggaaaaaaat gaaaaaagtt ttattaagtt cattggttgc
       61 ggtgtctttg ttaagtacag gtttgtttgc taaagaatat actttagata aagcacatac
      121 agatgtaggt tttaaaatca aacatttaca aattagcaat gtaaaaggaa atttcaaaga
      181 ttattctgcg gtgattgatt ttgaccctgc gagtgctgaa tttaaaaagc ttgatgcaac
      241 tataaaaatc gcatctgtaa atacagaaaa tcaaacaaga gataatcact tacagcaaga
      301 tgattttttc aaagcaaaaa aatatcctga tatgactttt acaatgaaaa aatatgaaaa
      361 aatcgataat gaaaaaggta aaatgacagg aactttaact atagctggag tttctaaaga
      421 tatcgtttta gatactgaaa tcggcggtgt agttaaaggc aaagatggaa aagaaaaaat
      481 aggcttttct ttaaatggaa aaatcaaacg ctctgatttt aaatttgcga caagtacttc
      541 aactattact ttaagtgatg atattaattt aaatatcgaa gttgaagcaa acgaaaaata
      601 attttttagt ctaagagtct tgctcttaga ctttgtaaat ttttatccaa attttcttca
      661 ctttcttgcc aaatcaattt aaaatccggt ttaaaatttt cattttctaa attaaattcc
      721 gtgtttttca aggtggattc taaaaaagca agatgattta aagcttgatt tttgtcatta
      781 aaaattaaaa taaaatcatt ttctacgata aaaatttttg ctctaaagcg ttttaaaatt
      841 tttgcaattt gttttaaaat gagtttggca tagctttctt tagtgtcttt tagttcatta
      901 aaatggagca aggcaatgat atagttgttt tttccctttg taaagcgtgt aaggcttttt
      961 tcattaggta gctttgttaa gatgtcaaaa aaagccaatt tataagcgtg atttaaaaga
     1021 taaaaacaaa aaactaaact tgcaaattca aaatacctta ttcctgctcc ttcttgaaat
     1081 aaaaactgaa aatatgcagc aaaaaatgcg ataataagat aatattcttt agttttaaag
     1141 attttgataa aaatgagtat taagccgact aaaaaaaata aaaatcctaa ttcactcaca
     1201 ggtttaaaaa aatttaatgt aataaaatgg aattctaaac cagcactatt aaaagtagta
     1261 tttctaggta aaatgatgct taaaacgcct ataaaaataa gggttgtaat tgaagcgata
     1321 ttttttttac ttaaaattaa agcatgatgt tttccaaggc aaaatagagt aaaaatcata
     1381 ggtaaaaaca aagccacaaa taaattagct tgaaaaaaac ttgtataaaa ataaggcaac
     1441 ttagctccta atagcactaa agtcaaaaag aaaattcttg aatttttaaa gtaaaaggat
     1501 agcacaagtg ctgaaatttc aaaaataaaa ctcaatgata ttaaaaaatc taataaaaac
     1561 atttcaaatc cttgatttta ataaaagtga taattgtata gaaaaaagct taaaagtgga
     1621 ctttatttaa atttagcaat ctcatcttgt atagtttgtt ctatatgaag taattcttca
     1681 tgagtttttt tactattttc taaaagttca tcaaatttaa agccaagcat aacaatacga
     1741 tataaattgg gtttatattt tctccaatta tataaagtgc taacatcaat gtctagttca
     1801 tatgccatat cacgcttgct cttttttgtc attttttacc ttaaaaattt agcctttaaa
     1861 aaattttaca ttaaaatttc tttattaaaa acacttgaaa tattcaatct tttatataaa
     1921 atatatttaa tatttcaata ttaattaagt tatagtatgg aataattcga gatatttttt
     1981 aattttcaag gagtagttat ggatttcaat tcggttcttt tcagcattgg cgataaattg
     2041 ccaaaagatg caacatctac cgtgatgcta aaaaagaaat ttgatcgctt aaatgaggat
     2101 aaacaaaaag aagtagtagc acagcttcca atgataaagc taaaaagtcc cgctctagta
     2161 ttttgggtag ggactttttt atttggtgct tttggagtgg gtcgttttat gataggagat
     2221 tgggttttag ggcttatacg cttgggaatt acaattgtag ctatgatttg cggtgtttta
     2281 atgattacat atagtgcttt agggataata tatggtttgt tgtggcttgt taattggatt
     2341 tggtggattg tagatatgtt tttagtgggt aaaaaattaa gaaaacaaaa ttttgaaa
//
LOCUS       DAZAND010000140         2356 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.142, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000140 DAZAND010000000
VERSION     DAZAND010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.142"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            87..383
                     /locus_tag="ACHDOB_001722"
     CDS             87..383
                     /locus_tag="ACHDOB_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HFN3326626.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            510..1409
                     /gene="cysM"
                     /locus_tag="ACHDOB_001723"
     CDS             510..1409
                     /gene="cysM"
                     /locus_tag="ACHDOB_001723"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HFN3326627.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPVNLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEIIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(1416..1976)
                     /locus_tag="ACHDOB_001724"
     CDS             complement(1416..1976)
                     /locus_tag="ACHDOB_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HFN3326628.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLAGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSITHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(1973..>2356)
                     /locus_tag="ACHDOB_001725"
     CDS             complement(1973..>2356)
                     /locus_tag="ACHDOB_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326629.1"
                     /translation="YIIKDSKKITKADFSTPLTCDLNVKDCTYSFNNKEVLISLNPKP
                     LQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIKPKIHRLNSTDYESKIVLAACVLD
                     TMRFRVEFMDNNKPIGFYFDFELKK"
BASE COUNT          857 a          293 c          378 g          828 t
ORIGIN      
        1 aaaacttaaa aaaaactgtt ttttacttga tattgttttt taaatatgct aaaattaggc
       61 gtttcaatta aaacaaagga gcttttatga ctaaagcaga tttcatttca ttagttgctc
      121 aaacagctgg gctaacaaaa aaagacgcta ctactgctac tgatgcagtt atttctacta
      181 ttactgatgt tttggctaaa ggtgatagca ttagttttat tggttttggt actttttcaa
      241 ctcaagaaag agctgctaga gaagctagag taccaagcac aggaaaaaca atcaaagttc
      301 ctgccacaag agttgcaaaa tttaaggtag gtaaaaacct taaagaagct gttgcaaaag
      361 caagcggcaa aaagaaaaaa taaaacttcg gctagataaa ttctagcctt ctttcttaat
      421 taattcagat attttgtatc ttttatttac tttatttttt taaactttta taaaactatc
      481 attattaaac aaaaaaggat attaaaatta tgaaagtaca tgaaaaagta agtgagctta
      541 taggaaatac tcctattata catttgaaaa aatttggtat caatgttttt gctaaatgtg
      601 aatttttaaa tcctagtcat tctataaaag atagagcagc ttttgaaatg attaaagatg
      661 ctttagatag taaaaaaatt aatcaagata ctacaatagt tgaagcaact agtggaaata
      721 ctggaatttc tttggctatg atttgtgcag atttgggact taaatttatt gctgtaatgc
      781 ctgaatctat gagtttagaa agaagaaaaa tgataacact ctttggcgct aggttagaat
      841 taactcctgt aaatttagga atgaaaggag cggttgataa agcaaatgaa atattattaa
      901 atactccaaa ttcttttatg gtttctcaat ttgaaaatat ttcaaataaa aatgcgcatc
      961 gtaagaatac ggctttagaa attttaagag atttggataa tgaacttgat atttttgtag
     1021 ctggttttgg aactggcggt actattagtg gagttgggga aatactaaaa gaaaaattag
     1081 aaaaagtgca tattgttgga gtcgagcctc taaattctcc attgcttagc aaaggtgaag
     1141 cgggaagcca taaaatacaa ggaatagggg cgaattttat acctgctatt ttaaataaag
     1201 aaattataga tgaagtgatc acggtaagta atgaagatgc tataaataca gccaaagaac
     1261 ttgccaaaag tggtttaatg gtaggtatat caagtggagc aaatgtattt gccgcaagta
     1321 tgctagcaaa gaaatttcca gataaaagaa ttttaactat gctaaacgat acggctgaaa
     1381 gatacctctc aactgatctt tttgcttaag tataattatt gagaatttag aaaaattcta
     1441 agttctctta aaatttcttg tggatttaaa tcgctaattt ctttataaaa atgacctttt
     1501 tcatcaataa gataaagcat attgctatgt gttatagaat aacccataaa agaatcattt
     1561 agatctattt tttgatattg aacattatat tgttttgtta ttttttgaag agttttttca
     1621 tcttttgcaa ttaaagcatc tgcttttgga taaaagtatc gtaaccattc gtttgtattg
     1681 cttaagttat tatctctatt tggatctaaa gaaataaaaa gaaggtgagc cttaggatta
     1741 ttgatttgct ttaaggcttt gcctgctaaa ctaagagttg ctggacaaac atcagggcaa
     1801 taagtgtatc caaaatagat aataagctta tctcctttaa aatcttttag ggtggtttcc
     1861 tcttttaagt ctgattttaa gataaaatca taagaatttt gatgattttt aataaaaaat
     1921 attacaccta aaataatggc aactataact ataaacaaaa taatattttt tttcattttt
     1981 ttagctcaaa atcaaaataa aaccctatgg gtttattatt atccataaat tctaccctaa
     2041 aacgcatagt atctaaaacg caagcagcaa gaactatttt actttcatag tctgttgaat
     2101 ttaatcgatg tattttaggt ttaatttcac ccatatacat atttaatcca taaattttaa
     2161 ttcctaagtt gttataattt cctagattta caatctttag atttgtaaca tctaaagatt
     2221 gtaagggttt gggatttagg gaaattaaga cttctttatt attaaaacta tatgtgcagt
     2281 ctttaacatt aagatcgcaa gtcaatgggg tagaaaaatc agcttttgtt atttttttag
     2341 aatcttttat tatata
//
LOCUS       DAZAND010000141         2283 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.143, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000141 DAZAND010000000
VERSION     DAZAND010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.143"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..746
                     /locus_tag="ACHDOB_001726"
     CDS             <1..746
                     /locus_tag="ACHDOB_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326630.1"
                     /translation="KWISKFKNKNILLNLGMMNTGRMDFQHQNLVYIMHDTRDAGHSI
                     FLNYDNLLACSIFFSVRHAISATWVNDRDQFLYPNDLYENDDEFKSDCLAFMLFHGQN
                     RISAKEGINHFIPFSEKELGITKEAFESDFMYKFIKGKIKDENSLFGDELVKIEFSLE
                     AQELLKAGKELFKYYHTHSEDKGYLVNASFYDIKEFFQGRDEKGKMNNPAKAKDEYYK
                     ALLSDLNANLKILAKKIEPKIYEYGFLKE"
     gene            749..2065
                     /locus_tag="ACHDOB_001727"
     CDS             749..2065
                     /locus_tag="ACHDOB_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HFN3326631.1"
                     /translation="MAKKQFSLTKLSVPIFWDLLSKYLTIIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQAISIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            2041..>2283
                     /locus_tag="ACHDOB_001728"
     CDS             2041..>2283
                     /locus_tag="ACHDOB_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326632.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKIRFEKKVLKDDELIF"
BASE COUNT          744 a          258 c          435 g          846 t
ORIGIN      
        1 gtaaatggat atctaagttt aaaaacaaaa atatattatt gaatttagga atgatgaata
       61 ctggtagaat ggattttcag caccaaaatc ttgtttatat tatgcacgat acaagagatg
      121 ctggacattc tatattttta aattatgaca atttattagc ttgttctata ttcttctcag
      181 tgcgtcatgc tataagtgct acttgggtaa atgataggga tcagttttta tatcctaatg
      241 atttatatga aaatgatgat gagtttaaaa gtgattgttt agcttttatg ctttttcatg
      301 gacaaaatcg cataagtgca aaagaaggga taaatcattt catacctttt agtgaaaaag
      361 aactaggtat cacaaaagaa gcttttgaga gtgattttat gtataaattt ataaagggca
      421 agataaaaga tgaaaattcg ctttttggtg atgagttagt aaagatagaa ttcagtcttg
      481 aagctcaaga gctcttaaaa gcaggaaaag aactttttaa gtattatcac acacatagcg
      541 aggataaagg ctatcttgtc aatgcttcgt tttatgatat caaagaattt tttcaaggta
      601 gggatgaaaa aggtaagatg aataaccctg ctaaagcaaa agatgaatat tataaagctt
      661 tactgagtga tttaaatgca aatttaaaaa ttttagccaa aaaaatagag ccaaaaattt
      721 atgaatacgg ctttttaaaa gaataatcat ggcaaaaaaa caattttccc taacaaaact
      781 cagtgttcct attttttggg atttgctttc aaaatacctt actatcatca tcaataccgc
      841 tatggtgtcg cattattcta attttcttgt tggtgctatg ggcgctggaa atcaaatttt
      901 agatcttttt atcactattt tttcattttt aagtgtgggt tgtagtgtgg tgatcgcaca
      961 agcaattggt gcaaaagatc atgttttagc aagaaaagtg attcatcaaa gtttgttctt
     1021 aaatgcactt ttaggctttg tatgcggtgt gcttatttta tggcatgggg agtatttgct
     1081 ttatctttta aaaattccac aagaattgct caaagatagc gaaatttact tacatatgct
     1141 tgcaatttgt ttgttttttg atgccatagg tattgtttta gctgctattg taagggttta
     1201 taatatggct tattgggtca tgtttatagg ttttttgatg gatatagtgg tgatttgtgg
     1261 aaattattat gttttgcatt atacaaagtc agaacttttt ggaatagggc ttagtaatat
     1321 ttttgctcgc attgttgcta tagttgcttt gtttgcgata cttttttata aacttaaaat
     1381 tcatcttaaa atcaaagaaa tgataaaact tgaaaaagaa gttttaaaaa aggttttaaa
     1441 tataggagga ttttcagcag gggaaaatct tttgtggata gtccaataca ctatagcttt
     1501 tgcttttgta gcaagcttag gtgaggcgag tttgagtgtg caaacgattt attttcaaat
     1561 ttcaatgctt atcatgctta taggacaagc tataagcata gctaatgaaa tcatagtagg
     1621 taaattagtc ggtgctagat atgaaaatat cgcttataaa catgcttggc gtgctttata
     1681 ttttagtgta atagcgagtg ctttagtggc gtttttaaac tatctttgtc aagattttac
     1741 tatgcaaatt ttagggctta aagaagagct aaaaaattta atgatacctt tatttgctct
     1801 ttcaatcttt cttgaaattt cacgaacttt taatatagtt atggttaatt ccttgcgcgc
     1861 aagtggcgat gctaagtttc cattttttag cggacttgtt tttatgatgg gggtatcttt
     1921 gcctgtgggt tatgtgcttt gttttcattt taatcttgga attttagggg tttggatagg
     1981 attttgtgca gatgagtttt tgcgtggaat ggtaaattca tacagatgga aaagtaaaaa
     2041 atggcaaggc aaagctctag tttaaaatca tttatttata aagatgagtg ctatttttat
     2101 tctaaaaaat gcataaaaac tttaagatta aggctaaatg aaaagggtga atttgttctt
     2161 agtattcctt atttttgcac ctttaaaagt gtttatgagt ttttagataa atcaagttct
     2221 tggatgaatg aggcaaaaat aagatttgaa aaaaaagttt taaaagatga tgagttaatc
     2281 ttt
//
LOCUS       DAZAND010000142         2283 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.144, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000142 DAZAND010000000
VERSION     DAZAND010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.144"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..407)
                     /locus_tag="ACHDOB_001729"
     CDS             complement(<1..407)
                     /locus_tag="ACHDOB_001729"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326633.1"
                     /translation="MNEKNIVLLGGSNSVMVNGLQKGLKEGIEKFNTTVNKEQEKLKF
                     YNLALGASSSLQNLYELKRNRNRTILKNAKLIISESNINDSWSYNNFEIYGIIESFFT
                     ELSCLNSKILILILPFFNYNSKVINQIHKKLAL"
     gene            482..1801
                     /gene="rimO"
                     /locus_tag="ACHDOB_001730"
     CDS             482..1801
                     /gene="rimO"
                     /locus_tag="ACHDOB_001730"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HFN3326634.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVLIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNFHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            1791..>2283
                     /gene="tilS"
                     /locus_tag="ACHDOB_001731"
     CDS             1791..>2283
                     /gene="tilS"
                     /locus_tag="ACHDOB_001731"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HFN3326635.1"
                     /translation="MQIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYEFFEKICFEQ
                     DYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRQNYTLLRPLLFISKDEIS
                     SFLK"
BASE COUNT          795 a          279 c          425 g          784 t
ORIGIN      
        1 tttagagcta attttttgtg aatttggtta atgactttag aattgtaatt aaaaaaaggt
       61 agtattagaa ttaatatttt actattcaaa caacttaatt ctgtaaaaaa tgattctata
      121 attccgtaaa tttcaaaatt attataagac caagagtcgt ttatgtttga ttcggaaata
      181 ataagtttag cattttttaa tatagttctg tttctattgc gtttaagttc atataaattt
      241 tgtagcgatg aagatgctcc caaggctaaa ttataaaatt ttaatttctc ttgctccttg
      301 ttgacagtgg tattaaattt ttcaatacct tcttttaacc ctttttgtag cccatttacc
      361 attacagaat tacttccacc aagtaaaact atattttttt cattcataaa tttttcctaa
      421 ttattatttt gatatgattt taaggaatta ttttatcaaa aaatttaaaa aagtgagaaa
      481 aatgtcaaaa ctttatctta tgtctttagg ttgtaataaa aatttagtcg atagtgagat
      541 tatgctagga cgtcttagtg cttatgagct ttgcgatgaa ccaagtaaag ccgatgtttt
      601 gatcgtaaat acctgtggtt ttatcgacag tgcaaaaaaa gaaagtatta atgcgatttt
      661 ggatttgcac gaacaaagaa aaaaagattc tcttttggtg gttacgggtt gtttgatgca
      721 gcgttaccgc gaagaactta tgaaagaact tcctgaggtt gatcttttca caggtgtggg
      781 tgattatgaa agaatcgatg aaatgatact taaaaaaaca aatttatttt caaattcgac
      841 ttatttgcaa agtgaaaatt ccaaacgtat tatcacaggt tcaaatttcc atgcttttat
      901 aaaaatcgcc gaaggttgta atcaaaaatg ctctttttgt gctatcccaa gttttaaagg
      961 caagttaaaa tctcgcgaga taagtagcat tatagctgag cttaaagatt tggtagctag
     1021 aggttataag gacttttctt ttattgcaca agatacgagt tcttatttgt ttgataaggg
     1081 tgaaaaagat gggcttatac gcttaatcga tgaggtggaa aaaatcaaag gcataagagc
     1141 ggctagaatt ttatatcttt atcctacgag cgcgagtgaa gctttgatca aacgcattat
     1201 agcttctgaa atttttgtaa attattttga tatgcctttg cagcacataa gtgataatat
     1261 gcttaaaatc atgaagcgtg gggcaaatag tacaagactt aaagaaatgc taaatttaat
     1321 gaaaagtgcg ccaaatagct ttttacgcac aggctttatc gtagggcatc caggtgaaag
     1381 tgaggcagat tttgaagagc tttgtgagtt tgttaaagat tttggttttg ataggataag
     1441 cgtttttgcg tattctaagg aagaagatac ggccgctttt gatatggagc aagtgccttt
     1501 taaagtgatc aataaaagac ttaaaatcat agaaaaaatt gttgatgaag tgatagaaaa
     1561 aagttttgaa aaagaagtag ggcaaaagcg tttagtagtt tgcacaggag aaagtagcga
     1621 gggagagttt tttatcgcag ctaaagattt aagatgggat agagagattg atggggaaat
     1681 tcttatcaat gaaagtgaat gtggaaattt agaaatgggg caaatttatg aatgtgaaat
     1741 tttacaaaac cttgataaaa agctccttgc taaggcttta agaaaagtag atgcaaatta
     1801 aagatgaaat tttagccctt ttaaaaaagg gtaaaaattt actcgctttt tcttatggaa
     1861 gtgattctag tgcgcttttt tatcttttaa tgcaagaaaa gatcgacttt gatcttgtga
     1921 tgatcaatta caaaactaga aaaaatagtg atttagaaga gttaaaagcc aaagagcttg
     1981 ctttgaaatt tcataaaaaa attttcataa aacacgctcc taaatttcaa agtaattttg
     2041 aaaaaaaagc cagagatttt cgctatgaat tttttgaaaa aatttgtttt gagcaagatt
     2101 atgatcatct tatcttagcg catcatttaa acgatcaatt tgaatggttt ttgatgcaac
     2161 tttcacgagg tgcaggtttg gctgaaattt taggtatgca agagtgcgaa aaacgccaaa
     2221 attatacact tttacgccct ttactcttta taagtaaaga tgaaatttca tcttttttaa
     2281 aag
//
LOCUS       DAZAND010000143         2136 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.145, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000143 DAZAND010000000
VERSION     DAZAND010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2136
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.145"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..307
                     /locus_tag="ACHDOB_001732"
     CDS             <1..307
                     /locus_tag="ACHDOB_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326636.1"
                     /translation="NLNSSISKFWIKNNAATLGDGIYGAKIYIEKLPIPKINSKNQKL
                     VDELINLVDEILKAKEQNKNASTQELENKINSLTYKLYNLTEDEIKIIENKEQKWKI"
     gene            295..1488
                     /locus_tag="ACHDOB_001733"
     CDS             295..1488
                     /locus_tag="ACHDOB_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326637.1"
                     /translation="MENLTKEQKKLFYKFIKNIKDENSLKQLEQFLDLIENNAIQNSL
                     KDIAEFNSVYKGNGNNEEMSIKDMIEDIKIGQKDIDEIYWKIFDIQSDNKNESSALIE
                     IEKAKEYADRIKSDYEKFYDQNAQGNVTKGIISKLKQACNDIETNKDKIKKFEEFYNE
                     IFVGIKADENGKGGKLSLKDRLNEQKTEINNLISSKKQELENCLNDYKDKFENLYKEK
                     NDKIDELLPGATSKGLAEAYKDEKEDMQENIKKWNGIFIGSIVLFITLFVIYFIISLN
                     KDFTFASFFRAFPFLFFSGFFTYYSTKQIAEYKRMASEYAYKQRLNQTYKGYETQIKE
                     TNNEELKNQLLKIMLDSAENNPSKILDKKGEIPSLSVIEKMLDILPFDTLKRIQDKIK
                     AKIEK"
     gene            1561..>2136
                     /locus_tag="ACHDOB_001734"
     CDS             1561..>2136
                     /locus_tag="ACHDOB_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002916381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326638.1"
                     /translation="MIKETHRKNMREYKIRRQLFNILSKNNPNNIKEYDISIPEYKKI
                     KKIIEKIKGKEDFRQSDGLFSDDEKWYLVCKATLDLSSLCDNMNNIQYNAITQCNIIF
                     SECNISLNDKQSENNRIVKTKLYFYNCTFEKTLNLKNIIFEKTLTFNQCKFKRKIRMY
                     SNIFLSHLVFRDCYDKQSKKITSLDLQENEFK"
BASE COUNT          979 a          209 c          301 g          647 t
ORIGIN      
        1 aaatttaaat tctagtattt caaaattttg gataaaaaat aatgctgcta cattgggtga
       61 tggaatttat ggtgcaaaaa tttatataga aaaacttcct ataccaaaaa taaattctaa
      121 aaatcaaaaa ttagtcgatg agcttataaa tttagtcgat gaaattttaa aagccaaaga
      181 gcaaaacaaa aacgcaagca cccaagaact agaaaataaa atcaattctt tgacttataa
      241 actttacaat ctcaccgaag atgagataaa aatcattgaa aataaggagc aaaaatggaa
      301 aatttaacta aagagcaaaa aaagttattt tataaattta ttaaaaacat taaagatgaa
      361 aattctttaa aacaattaga gcaatttctt gatctaatcg aaaataatgc tatacaaaat
      421 tcattgaaag atattgcgga atttaattct gtttataaag gaaatggcaa taatgaagaa
      481 atgtctataa aagatatgat tgaagatata aaaatcggac aaaaagatat agatgaaatt
      541 tattggaaaa tttttgatat tcaatctgat aataaaaatg aaagtagtgc tttaatagag
      601 atagaaaaag ctaaagaata tgcagataga ataaagagcg actatgagaa attttatgat
      661 caaaatgctc aaggcaatgt taccaaaggg attatctcga agttaaaaca agcttgtaat
      721 gatatagaaa caaataaaga taaaataaaa aaatttgaag aattttataa tgaaattttt
      781 gttggcatta aagcagatga aaatggaaaa ggcggaaaat tatctcttaa agatcgttta
      841 aatgaacaaa agactgaaat aaacaattta atttctagta aaaaacaaga attagaaaat
      901 tgtttaaatg attataaaga taaatttgaa aatttgtata aagaaaaaaa tgataaaata
      961 gatgaattat tgccaggtgc aacttctaaa ggattagccg aagcttataa agacgaaaaa
     1021 gaagatatgc aagaaaatat taaaaagtgg aatggtattt ttattggctc catagttctt
     1081 tttataactc tttttgtaat ttattttatt atatcattaa ataaagattt tacatttgca
     1141 agttttttta gagcttttcc gtttttattt tttagtggat tttttactta ttattctaca
     1201 aaacaaattg cagagtataa aagaatggca agcgaatatg cttacaaaca aagattaaat
     1261 caaacttata aaggatacga aactcaaatt aaagaaacga ataatgagga attaaaaaat
     1321 caacttttaa aaattatgtt agattctgcc gaaaataatc caagcaaaat acttgataaa
     1381 aaaggtgaaa ttcctagttt aagtgtgatt gaaaaaatgc ttgatattct tccatttgat
     1441 acattaaaga ggattcaaga taaaattaaa gcaaaaatag aaaaataatt ataaaaaact
     1501 atttaaaaac cgcacgaaaa aattccatag tgccaagttg aaaaagatag gaaggataaa
     1561 atgataaaag aaacacatcg gaaaaatatg agagagtata aaattagaag acagttattt
     1621 aatattctat caaaaaacaa tccaaataac ataaaagaat atgatatatc tattccagag
     1681 tataaaaaaa taaaaaaaat aatagaaaaa ataaaaggaa aagaagactt taggcaaagc
     1741 gatgggttat tttctgatga tgaaaaatgg tatttggttt gcaaggcaac actagactta
     1801 tcttcattat gtgataatat gaacaatatc cagtataatg ctattaccca gtgtaatatt
     1861 atttttagcg aatgtaatat tagtttaaat gacaagcaat cagagaataa tcgcattgtt
     1921 aaaaccaaac tatactttta caattgtact tttgaaaaaa cattaaattt gaaaaatatt
     1981 atttttgaaa aaacattaac ttttaatcag tgtaaattta aaagaaaaat acgtatgtat
     2041 agtaatattt ttttaagcca tttagttttt cgagattgct acgataaaca aagtaaaaaa
     2101 atcacatctt tagatttgca agaaaacgaa tttaaa
//
LOCUS       DAZAND010000144         2101 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.146, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000144 DAZAND010000000
VERSION     DAZAND010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.146"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..792)
                     /locus_tag="ACHDOB_001735"
     CDS             complement(<1..792)
                     /locus_tag="ACHDOB_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HFN3326639.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENQHYAKLEY
                     EQNVSILPQFAYDINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNATNNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNAGTPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFPIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKK"
     gene            841..>2101
                     /gene="pif1"
                     /locus_tag="ACHDOB_001736"
     CDS             841..>2101
                     /gene="pif1"
                     /locus_tag="ACHDOB_001736"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HFN3326640.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSASVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNYLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWVGSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFAN"
BASE COUNT          768 a          237 c          323 g          773 t
ORIGIN      
        1 ttttttagag cctatttttc cataaaaata gtttttatct tctttgtagt aaggataaat
       61 agcgccaatt ctactttcaa agaaaaattt accatcctcg ctatagatag gaaatttttc
      121 ttttagcggt gtgataaagt tgagattttc atagattttc gctctatcgt ttgagaaaaa
      181 ttccaaattt ttactttcaa caaatccaaa tccagcttca cctaaaacaa aagcataacg
      241 cttatcttta ctaaaatgtg aaattaagac aggggttcca gcatttaaaa tgccatcgct
      301 tgcatagtca aaaggaattc cttcattttc aaaaaaagga ttttttaaga tagctctttg
      361 ggttggaaga tttttaatga ttgtattttg gataattaaa gctttttgat taagtttgcc
      421 aaattcttgg atatttgcgt tatttgtagc gtttttaaac catgaaagtg gaataatttg
      481 tttattgaaa aaataataag tattttttga atttaaatat aagggaaagg accaaaaaat
      541 attttgtcct ttgtaatttt taaacgaatc atgccaaggg ttaaagaaat attttttata
      601 tcgttttgca tcaaaattaa tatcgtaagc aaattgtggc aaaatgctta cattttgttc
      661 gtattcaagt tttgcataat gttgattttc atttttttgt tctaaatttt catgatgaag
      721 tgaagttaaa ttttttgttg aacaagctgt taaaaatagc actataaaag taaaatataa
      781 acaagatttc ataatcaacc ttttagaaaa aatagttata attaaagcca aggaaatata
      841 atgcttgata aactagaaaa aattttagct tatgataatg tttttttaag tggtggtgct
      901 ggagttggta aaagcttttt gacaaatgag cttatcaaat cttatagaaa acaaaaaaaa
      961 ttagccatag ctcttggttc tagtgctcta tcggcgttta atataggcgg tgttacctta
     1021 cacagctttt tttgtttagg atattgtgat gatatgatga aattaagcgc attggatcgc
     1081 aatcaaaaac aaaaagaaaa attaacaaaa cttaaagagc ttttaaaaac gattgagctt
     1141 attattatcg atgaaatttc catggttagc gcaagtgttt ttgaaatgat aggctttaga
     1201 cttaaaaatt ctcaatttaa tggaaaaatt ttagttgtag gagatttttt tcaactgcct
     1261 cccgtaatta aagaaaaaaa agaaacttta tttaatcatt cttattatgc tttttcttca
     1321 tttttttggc aagatttaaa ttttaagaat attaaacttt ctcaacctaa aagaacacaa
     1381 aatatggaat tttataacta tttatctttg attagacaag gttttttaga tgaaaaaatt
     1441 ttaagctttt ttgaatcttt gcgaattgat tataaagaat tagaaaattt agaagatgat
     1501 tatactttac tttgtggtat caataaaaaa gtaaacaata tcaatcaaga aaaattaagc
     1561 aaacttgaga ccccacttgt atgctttaag gctcaggtta aaaaagaaga taagagaata
     1621 aaagatgaag aacttgattc ttgggttgga agcttaaata tattggaaga attaaatatt
     1681 aaaataggtg ctcgtattat tttttgtgta aataattggg ataagaatta ttataatggt
     1741 gagcaaggca ttatagaaga tattctttat gaagaggaga aaatttatat tagtattatt
     1801 aaaaataatg ggatgaaaat tttacttgaa ccttatactt ttttcatgga agaacttgaa
     1861 caatcaggta aagattttgt tgttaatatt cttgcaagtg ttacacagtt tcctattaaa
     1921 ttagcttatg ctatcactat acacaaatca caaggtatga gtattgaaaa attagtgtgt
     1981 gatattgatc atatttttga aaatggacag ctttatgtcg ctctttctcg cgctacaaac
     2041 ccaaatactt taaaaattta ttctacaaaa aagataaatt ttggatttta ttttgctaat
     2101 a
//
LOCUS       DAZAND010000145         2022 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.147, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000145 DAZAND010000000
VERSION     DAZAND010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.147"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            466..1017
                     /locus_tag="ACHDOB_001737"
     CDS             466..1017
                     /locus_tag="ACHDOB_001737"
                     /inference="COORDINATES: protein motif:HMM:NF017885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HFN3326641.1"
                     /translation="MTYKEIKDKTPYEILDLLEMKEPPFNPFEIAQKLGINVVKDLDL
                     DKIDTEGQISVDEKGEPIIWINPLKNENRQRFTLAHELGHLANDILPSIENPIIDSYE
                     TLYRSNTYGGIETRANQFAARLLMPLRQIEDFIAECRKTTPDLKAAEAILLIASKFEV
                     SKQAVFHRLKNVGLIKQDYTYPF"
     gene            complement(1014..1298)
                     /locus_tag="ACHDOB_001738"
     CDS             complement(1014..1298)
                     /locus_tag="ACHDOB_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326642.1"
                     /translation="MDRVSADIRQGVNKRFINAICNHNNELVLEYLKNGMSVTKECMG
                     KEPMFYAVTHNNFGAILLLLKYGAILDKEYLEESNKNFSKEALEFLASLL"
     gene            complement(1358..1987)
                     /locus_tag="ACHDOB_001739"
     CDS             complement(1358..1987)
                     /locus_tag="ACHDOB_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFN3326643.1"
                     /translation="MQMQEVIEKLKDILASEGKCNLKTKDIAKELGIHPDTFNSMKFR
                     NSIPYPQILNFLNQRNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGGGGINDL
                     IDSSDLIIDEKVLNFFGSKECEFITCYGESMEPIIKDGSICVIDRNKTFKNKSICVIN
                     TRDGLYIKQVLKQDDGVILHSLNPLYEDIFYKNGDFLLIGVVIGELSRL"
BASE COUNT          736 a          292 c          266 g          728 t
ORIGIN      
        1 aaagagcttt tgattatgaa tttttagcaa gctaagagag taaaaatact ctctttaata
       61 tttaattttg taaaaatatg gtaaagtacc tttaaaatta aaaataattt aaggatttat
      121 tatagaaaac aattacacca attctgatat tattactatt gcaagttctt atctaactta
      181 tggaagttta attgttgcta ttgctacttt cttaacagct gttattgcca tagggcttac
      241 tatatattat aaccgtgata aacaaagatt aataaaagaa acaactgatg tatttttaaa
      301 taaaattata gaagatgaga aattacgcaa tgattttata aataaaattc taaaaaatag
      361 tgaatttatg gaagaatttg aaagaatggt cgatttacat ataaatgata aaatatctat
      421 attgacagat attgatcaag aaaaatcaca aataggaggt ttggaatgac ttataaagaa
      481 ataaaagata aaacccctta tgaaatttta gatttattgg aaatgaaaga accaccattt
      541 aatccgtttg aaattgctca aaaattaggt ataaatgtag ttaaagatct tgaccttgat
      601 aaaattgaca ctgaaggtca aattagcgta gatgaaaaag gtgaacctat tatttggata
      661 aatccgctta aaaatgaaaa tagacagcgt tttacattgg cacatgaatt agggcattta
      721 gctaatgata ttttacctag catagaaaat cctattattg atagttatga aaccctttat
      781 agaagcaata catatggtgg aatagaaact agagccaatc aatttgcggc aagactactt
      841 atgcctcttc gacaaataga agattttata gcagaatgca gaaaaacaac acctgactta
      901 aaggcagcag aagcaatatt acttattgct tcaaaattcg aagtttcaaa gcaagctgtt
      961 tttcacagac ttaaaaatgt aggtctgata aaacaagatt atacatatcc tttttagagc
     1021 aaagaggcta aaaattctaa agcttctttg ctaaaatttt tattgctttc ttctaggtac
     1081 tctttatcta aaatagcacc gtattttaat aaaagtaaaa tcgctccaaa attattatga
     1141 gttactgcat aaaacatagg ctctttaccc atgcattctt tagtaacact cataccattt
     1201 ttaagatatt ctaaaacaag ttcattgtta tgattgcaaa ttgcgtttat aaatcttttg
     1261 ttaacacctt gtcttatgtc tgctgatact ctatccatct ttatatcctt ttgtattgat
     1321 gagacaagat tagcttggct tagcttattg tgtgctgtca tagtcttgaa agttctccaa
     1381 ttaccacacc aattagcaaa aaatctccat ttttataaaa tatatcttca tataaaggat
     1441 ttaaagagtg taaaatcact ccatcatctt gttttaaaac ctgttttata tataaaccat
     1501 ctctagtatt aatcacacaa atgcttttat tcttaaaagt tttatttcta tctattacac
     1561 aaattgaacc atcttttatt attggttcca tactctctcc gtaacaagta ataaactcac
     1621 attctttact tccaaaaaag tttaaaacct tttcgtcgat gattaaatca gagctatcaa
     1681 tcaaatcatt tataccacct ccgcctaaac ttgcatttgt tttataaagc tttaaaattt
     1741 tatacttgtt ttcacattct aattgatctt ttggggaact tccatagaag aaataattaa
     1801 tgcttatatt tctttgattt aaaaagttta ggatttgtgg atatggaatg gagtttctaa
     1861 atttcatgga attaaaagta tcaggatgaa ttcctagttc tttggctata tcttttgttt
     1921 ttaaattaca cttaccttca ctggctaata tatcttttaa cttttcaatc acttcttgca
     1981 tttgcatgtt aaatcctttg attttaattt caaagaaatt ta
//
LOCUS       DAZAND010000146         2016 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.148, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000146 DAZAND010000000
VERSION     DAZAND010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.148"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1252
                     /gene="recG"
                     /locus_tag="ACHDOB_001740"
     CDS             <1..1252
                     /gene="recG"
                     /locus_tag="ACHDOB_001740"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HFN3326644.1"
                     /translation="YNFLKRLKAKQTHFKAHQINVFNIANWLKDLPFSLTKDQLNALK
                     DIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAILMAPTSILAYQLYEEAK
                     KFLPDFMNILFIKGGKKEKDLEQNIQKANLIIGTHALIHLESHNAVLVMIDEQHRFGS
                     AQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSELLNFSFIKQMPFKKDITTYCIQ
                     NEGFSKLSEKIKEEISKNHQIIIIYPLVSASDNIPYLSLEQAKEYWQSHYEKVFVTHG
                     KDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVGAERLGLATLHQLRGRVG
                     RVGLKSTCYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNRLSGDLLDGFMQHGNEFK
                     FFDFSKDEEILEKVKKDLAKKLPN"
     gene            complement(1249..1632)
                     /gene="ctb"
                     /locus_tag="ACHDOB_001741"
     CDS             complement(1249..1632)
                     /gene="ctb"
                     /locus_tag="ACHDOB_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HFN3326645.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEVWLGLFEESLNMVYNEEM
                     KAVILQRAQMIASHFQNMLYKYGGH"
     gene            1727..>2016
                     /gene="nssR"
                     /locus_tag="ACHDOB_001742"
     CDS             1727..>2016
                     /gene="nssR"
                     /locus_tag="ACHDOB_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HFN3326646.1"
                     /translation="MKDYLELLSSVGKLKKIQKNSILFYEGEEAKKFFILLKGKIRIY
                     KSTASDKEITLHYFNPPNFIAEMPAFKKLNYPANAIFEEDGEILEIDFINFQ"
BASE COUNT          712 a          274 c          331 g          699 t
ORIGIN      
        1 atataatttt ttaaagcgtt taaaagctaa acaaacgcat tttaaagctc atcaaatcaa
       61 tgtttttaat atagctaatt ggcttaaaga tttgcctttt tctcttacta aagatcagct
      121 taacgcctta aaagacatag aaaaagattt acactcaaaa gaagccaaaa ggcgtgtgat
      181 tatgggtgat gtggggtgtg gtaaaacctt ggttttactc ggtgcggctt tgatggttta
      241 tcctaagcaa gctattttaa tggcacctac tagtatttta gcgtatcagc tttatgaaga
      301 ggctaagaaa tttttacctg attttatgaa tattttgttt attaaagggg gtaaaaaaga
      361 aaaagattta gaacaaaata tccaaaaagc aaatcttatc ataggcactc atgctttaat
      421 tcatttagaa agtcataatg ccgtgcttgt aatgatagat gaacaacatc gttttggatc
      481 agctcagcgt gaaaaaattc attctttaaa taagcaagaa tttgcccctc attttataca
      541 gttttcagct acgcctattc caagaacttt aagcatgata caatctgaac ttttaaattt
      601 tagctttatt aaacaaatgc cttttaaaaa agatattaca acttattgca tacaaaatga
      661 aggtttttct aagcttagcg agaagatcaa ggaagaaatt tctaaaaatc atcaaattat
      721 cattatttat cccttagtga gtgctagtga taatattcct tatctttctt tagagcaggc
      781 caaagaatat tggcagagtc attatgaaaa agtttttgta actcatggaa aagataaaca
      841 aaaagatgaa attttagagc gttttagaga tgagggaaat attttactaa gcactacagt
      901 ggtggaagta ggtatttctt tgccaagatt gagtatgata gtgattgtgg gggcggaacg
      961 tttaggactt gctaccttac atcaacttcg tggccgtgta ggtcgtgtag ggcttaaaag
     1021 tacttgctat ctttatacta aacttaaaga aattccgagt cgtttaaaag aatttgctag
     1081 cactttagat gggtttaaaa tagcagagct tgatcttaaa aatcgtttga gtggagattt
     1141 gctcgatggt tttatgcaac atggaaatga gtttaaattt tttgattttt ccaaggatga
     1201 ggagatttta gaaaaggtga aaaaagattt ggcaaaaaaa ttgccaaatt aatgtccacc
     1261 atatttataa agcatatttt gaaaatgtga agctatcatt tgtgcacgct gtaaaataac
     1321 tgctttcatt tcttcattat aaaccatatt taaactttct tcaaaaagtc ctagccaaac
     1381 ttcaaaaaat tcttgaggaa aaggaggtaa atctagatgc ttttttaagg gttgcccatt
     1441 ataatcacct tctcctaaaa gcatgcctgc ccaaaaattt cctatttttg ctttatgttc
     1501 tttccattct tcatcacttg ttccaatagc attgttaaaa atagggccca aatccttatc
     1561 ttttctaact ttttcataaa atatttccat gagttttgct atgctttctt gattaattgt
     1621 ttcaaatttc atataagcct ttcttaaatg ttaattttat ggcgttaata tagcaaaaat
     1681 aagataaatt aaatttaaca taagttaaga atggaaaatg tatataatga aagattattt
     1741 agaactttta tctagtgtag gaaaattaaa aaaaattcaa aaaaatagta ttttatttta
     1801 tgagggcgaa gaggctaaaa aattttttat tttactcaag ggaaaaatac gcatttataa
     1861 aagtacagca agtgataaag aaattacttt gcattatttt aatcctccaa attttatagc
     1921 agaaatgcct gcttttaaaa aattaaatta tcctgctaat gctatatttg aggaagatgg
     1981 agaaattttg gaaattgatt ttattaattt tcaaaa
//
LOCUS       DAZAND010000147         1998 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.149, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000147 DAZAND010000000
VERSION     DAZAND010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.149"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..245
                     /locus_tag="ACHDOB_001743"
     CDS             <1..245
                     /locus_tag="ACHDOB_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HFN3326647.1"
                     /translation="INDLREYFEKFMIILEKKANERLENMVKEEDVLNYLKEHQDLGK
                     KIKNILDYELQHIKEHRPDIINSWEYYKKFLEFFKE"
     gene            complement(272..1357)
                     /gene="wlaRG"
                     /locus_tag="ACHDOB_001744"
     CDS             complement(272..1357)
                     /gene="wlaRG"
                     /locus_tag="ACHDOB_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032603539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class E lipooligosaccharide biosynthesis
                     aminotransferase WlaRG"
                     /protein_id="HFN3326648.1"
                     /translation="MMFFLNLKQINDRFNTEFITKFKEILESGWYILGKQCEKFENNF
                     AKYCGVKHCIGVANGLDALRLIIKAYDFKENDEIIAPANTYIASILAITDNKCKPILI
                     EPDINTYNINPDLIEEKITKKTKAIMVVHLYGQVCDMEKIQLLANKYNLKIIEDCAQA
                     HGAIYKDKRVGNLGDAAGFSFYPGKNLGALGDAGCICTNDDNFASKIRALANYGSHKK
                     YENLYIGLNSRLDEIQAAFLDIKLKYLDEDNNKRKNIANFYLQNIKNENIILPSNKFD
                     HVWHLFVVKTKLRDELQHYLNNHDIQTIIHYPIPPHKQKCYKDLNHLQLPITENIHQE
                     VLSLPISPTMKENDFKKVADILNKWKV"
     gene            complement(1323..>1998)
                     /locus_tag="ACHDOB_001745"
     CDS             complement(1323..>1998)
                     /locus_tag="ACHDOB_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFN3326649.1"
                     /translation="SNNNYKIIGGIYNNSLNISDVNYLGATNKIISGRDAFRFSIYNK
                     LIGFPFYKKTIDKIINFNEESFNGDEYSFREHLLQAKKIAFIDTEFYVYNFNQESITK
                     KIGVHHWDTWKTWFNLEKLAQKHNYEKKLIKKINKIRYSIYYELCIKFNKTEYLFSQN
                     EKNIILNKILENKNHLSRINSIFDFLFYKCKDEKGKYIKFINKYTFYYKKIKGNNVFF
                     EFKTNK"
BASE COUNT          676 a          255 c          240 g          827 t
ORIGIN      
        1 taatcaatga tcttagagaa tattttgaaa aatttatgat tattttagag aaaaaagcga
       61 atgaaagact tgaaaatatg gtaaaagaag aagatgtttt aaattattta aaggagcatc
      121 aagatttagg aaaaaaaatt aaaaatattt tggattatga attgcaacat ataaaagagc
      181 atagaccaga tattattaat agttgggaat actataaaaa atttcttgaa ttttttaaag
      241 aataagcgaa taaaatggag agggcaatct atcagacttt ccatttgttt aatatatcag
      301 ccactttttt aaaatcattt tctttcatgg ttggcgatat aggtaatgac aaaacttctt
      361 gatggatgtt ttctgttatg ggtagttgca aatgatttaa atctttatag catttttgct
      421 tatggggagg gataggatag tgtataatag tttgaatatc atgattattt agatagtgtt
      481 gtaattcatc tctaagcttt gttttgacta caaatagatg ccaaacatga tcaaatttat
      541 tactaggtaa tataatattt tcatttttta tattttgtag ataaaaattt gctatatttt
      601 ttcttttatt attgtcttca tctaaatatt ttaattttat atccaaaaaa gcagcttgta
      661 tctcatctaa tctagaattt aatcctatat ataaattttc atatttttta tgagagccat
      721 agtttgctaa agctctaatt ttggatgcaa aattatcatc attggtgcaa atacacccag
      781 catcccctaa agcacctaaa tttttaccag ggtaaaaaga aaaaccggca gcatctccca
      841 aatttccaac tcgtttatct ttataaatag cgccatgtgc ttgagcacaa tcttctataa
      901 tttttaaatt gtatttatta gctaacaact gaattttttc catatcacaa acttgaccat
      961 aaagatgaac aaccatgata gctttagttt tttttgtgat cttttcttct attaaatcag
     1021 gatttatgtt gtaagtattg atatcaggct ctattagtat aggtttgcat ttattatcag
     1081 ttatagctaa aattgatgct atgtatgtat ttgcaggagc tatgatttcg tcattttctt
     1141 taaagtcata agcttttatg atcaatctta aagcatcaag cccatttgca acgcctatgc
     1201 aatgtttaac cccacaatat tttgcaaaat tattttcaaa tttttcacat tgctttccaa
     1261 gtatatacca accactttct agaatttctt taaattttgt tataaattca gtgttaaacc
     1321 tatcatttat ttgttttaaa ttcaaaaaaa acattatttc cctttatttt tttatagtaa
     1381 aaagtatatt tgtttatgaa ttttatatat ttaccttttt cgtctttgca tttataaaat
     1441 aaaaaatcaa atatactatt gattctggat aagtgatttt tattttctaa tattttgttt
     1501 aagattatgt ttttttcatt ttgtgaaaac aaatattcag ttttattaaa tttaatacat
     1561 aattcataat atatactata tcttatttta ttaatttttt ttattaattt tttttcataa
     1621 ttatgctttt gtgctaattt ttcaagatta aaccaagttt tccaagtatc ccaatgatga
     1681 acacctattt tttttgtaat gctttcttga ttaaaattat aaacatagaa ctcagtatca
     1741 ataaaagcta ttttttttgc ttgcaatagg tgctctcgga aactatattc atccccatta
     1801 aagctttctt cattaaaatt tattatttta tcaatcgttt ttttataaaa cgggaaccct
     1861 attaatttat tataaatact aaatctaaat gcatctctac ctgatattat tttatttgta
     1921 gctcctaaat agtttacatc ggatatattt agactattat tatatatgcc tcctatgatt
     1981 ttatagttat tgtttgaa
//
LOCUS       DAZAND010000148         1983 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.150, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000148 DAZAND010000000
VERSION     DAZAND010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.150"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..212
                     /locus_tag="ACHDOB_001746"
     CDS             <1..212
                     /locus_tag="ACHDOB_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326650.1"
                     /translation="NVKEKIHFFAMFFTLFKLMAYVILVAGFLFLHRQDKLDIFAYIC
                     GISSLLVCVFIFILYIKKYESKKNY"
     gene            190..1377
                     /locus_tag="ACHDOB_001747"
     CDS             190..1377
                     /locus_tag="ACHDOB_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN3326651.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALVGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIISLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            1370..>1983
                     /locus_tag="ACHDOB_001748"
     CDS             1370..>1983
                     /locus_tag="ACHDOB_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HFN3326652.1"
                     /translation="MINTQLASQIVNTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKTLSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDT"
BASE COUNT          653 a          272 c          308 g          750 t
ORIGIN      
        1 caaatgttaa agagaaaatc catttttttg ctatgttttt tactctcttt aaattgatgg
       61 cttatgtaat attggttgct ggatttttat ttttacatcg ccaagataaa ttagatatct
      121 ttgcttatat ttgtggaatt tcatccttgc tagtttgtgt gtttattttt attttatata
      181 taaaaaagta tgagtccaaa aaaaattatt aaatcaatga cagcactttt tgctggtatg
      241 gcatttttat ttgcaggtaa tgccttgata gtaagctcta taggtgttat attaaaagaa
      301 aacggagaaa gttctttagc tgttggagta gtaagttctt gtttttttgt aggcgctctt
      361 gttggaacta tcagtgctca taaaattatt tctcgtatag gtcatatacg ctcttttggg
      421 ctatttggtg ctatttttgg aatttcagct atgcttcata cagtaagcga aaatcttatt
      481 ttttgggctg ttttaagatt tttcatagga atttgctact atggactttt aatggtcata
      541 gaatcatggc ttaatgaaaa aagcaaaaat gccattcgat ctagaatttt aggtttttat
      601 gaaattgttt tttatcttgc gtttggtatt ggagttttaa tcatagcgtt aaatttgagc
      661 aaacatagtg tatttattct cagtgcaact ttaattttac tttcatcttt acctttaaat
      721 ctaattaaaa tcaaagaacc tgttttgccc gcatcaagtc ctatttctat acctaaaatt
      781 tttgatatag ctcctttggc tatcgtcaca agctttatag ctggaatgct tataaatggc
      841 tttttttcta tggcatcttt atttatactt ttgcaaggtt ttgatacaaa agcggtttct
      901 tattttatat tttgtggggt tttaggtggt tttattgcac aaaccatcat aggaactatt
      961 tcagataaac ttggtcgcaa atttgctatt atcacttgcg caagcatagg atttatcact
     1021 atgcttatat ttatcttttt taaacttcat ttgtatatgc aatatttttt aggaattact
     1081 cttggtatag gaatattttg tttatatgct ttagcacttg ctagagcaaa cgatgtttta
     1141 gtaagcaaaa ataaaggcgt agagttaggt cgtggggttc ttttttgtta ttctttgggc
     1201 tctttgtttg gccctttaat tttaggtttt ttaatgcaat attttgaaat caaaggtttt
     1261 atatggtttt atataatttc tttagcattt ttaattcttt ttgctatcaa taaaccaaat
     1321 attttaaata aaaaatttaa gaaaaagcct ggaaatatgg tgatatttga tgattaatac
     1381 tcaactagca agtcaaattg tcaatacgca aaaaaatgat ttaaaagtag ataactctgc
     1441 ttcaaaagat aaaacaaatt taaaagacaa tccaaaagaa gcacttgcac aagctttaaa
     1501 gcaaaattta ggtttaagca aggacgctag tagtgaggaa atactagcaa aatttgttca
     1561 aaatgaaaca ggtaccaaat taaaagaact tgttaataaa cttttagatc aaatcaatgc
     1621 tcaaaaaaat cccgattccc ctgtacttaa acaaggaaaa aatttaaatt tagctcctaa
     1681 ttttgctaat gaattaaaaa ctttaagtac agaacttgca aaaagcgata cttttacaca
     1741 agttttagat agattaaatc aaattttaaa acctgccagt gaaataaaaa acaataactt
     1801 agctcctttg tttaaaaatt caggcgtatt tttagaagct aaattaaaag atgccctaaa
     1861 cgaagaatta ctacccaaaa gttttcactc tcttttaagt acaatcaaag gtcttagtag
     1921 cgaaaaacta agcgttcaga tagcccagct tgcaaataca aatttaagcc caaaagacac
     1981 ttt
//
LOCUS       DAZAND010000149         1968 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.151, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000149 DAZAND010000000
VERSION     DAZAND010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.151"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            31..609
                     /locus_tag="ACHDOB_001749"
     CDS             31..609
                     /locus_tag="ACHDOB_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326653.1"
                     /translation="MGLKDNLKAVKNELNTEEQFIENFIKGERFIRKYKFYISAVVII
                     LVAWFAGNFIISKINDYKTKEANEIYANLIQDPSNKNLLEQLKNKNTNLYAIFLLKEN
                     INDFNNTALQNELKQIYNNAQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNK
                     IEEANVLLSQIKENSSLNQIAKNLKHYQGITQ"
     gene            606..1604
                     /locus_tag="ACHDOB_001750"
     CDS             606..1604
                     /locus_tag="ACHDOB_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326654.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPEQTNGDLSHNGNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYILIAYQDGEYFTADDNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNTQVFKLSEAVDKISFMGNGKFYYGDKILDLL"
     gene            1601..1891
                     /locus_tag="ACHDOB_001751"
     CDS             1601..1891
                     /locus_tag="ACHDOB_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HFN3326655.1"
                     /translation="MIKILEQTIKALKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            1878..>1968
                     /locus_tag="ACHDOB_001752"
     CDS             1878..>1968
                     /locus_tag="ACHDOB_001752"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="type III; catalyzes the formation of
                     (R)-4'-phosphopantothenate from (R)-pantothenate in
                     coenzyme A biosynthesis; type III pantothenate kinases are
                     not subject to feedback inhibition from coenzyme A and
                     have a high Km for ATP; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantothenate kinase"
                     /protein_id="HFN3326656.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEF"
BASE COUNT          801 a          252 c          252 g          663 t
ORIGIN      
        1 aaaataaaaa tattttttca aggataaatt ttgggactaa aagataattt aaaagctgtt
       61 aaaaatgaac ttaacacaga agaacaattt atagaaaatt ttatcaaagg agagagattt
      121 atacgcaagt ataaatttta tatatctgct gttgtgataa ttttagttgc ttggtttgct
      181 ggaaatttta taatctcaaa aataaacgat tataaaacaa aagaagcaaa tgaaatttat
      241 gccaatctaa tacaagatcc tagcaataaa aatcttttag aacaacttaa aaataaaaat
      301 accaatcttt acgctatctt tttactaaaa gaaaatatta atgattttaa taatacagct
      361 ctccaaaatg aactaaaaca aatttataat aatgctcaaa caaacacttt acttaaaaat
      421 attattgcat tatctttagg ggataaatcg atatttttaa aaaattatga taaattatta
      481 gaagcttaca aacttttaga gcaaaataaa atcgaagaag ctaatgtttt actttctcag
      541 ataaaagaaa attcaagttt aaatcaaata gctaaaaacc tcaaacatta tcaaggcatt
      601 acacaatgaa aaaaatattt ttaacactat tttgtttaat atttctatgt gcttgtggca
      661 ctaaaagaca atattttgaa ccagaacaaa ccaatggaga tttaagccac aatggtaatt
      721 taaaaagcaa aatcgttgac tggaatctag tttctgcaaa acttagcaat aatactgcta
      781 tattaaaaaa taatatttct atagataagt ttaaacttcc taaaaattat atacttatag
      841 cttatcaaga tggagaatat tttaccgcag atgacaatgg gaatttaaaa atttttgaca
      901 attcttataa tgaaatttat aattttcaat ttgacgctag tgttgtagga gtagcttcta
      961 atggagatga tttagccctt gtacttgcaa ataatactat agttcttgca aatcgttctt
     1021 tgggtattaa attcagtcaa accctaacct cagctccagc tcaagacagt cgtaccgcta
     1081 atcctatatt tttagacaat atcatcgtat atccaacgct agatggcaaa attttaattc
     1141 tttcaagaaa caatcttcaa gtcattaaag atgtggttat ttcagcagaa aattttttca
     1201 acaatgtaat ccatctaagt gtaattggag ataaacttat agcagcaaca gctaaaaaaa
     1261 tcattgttgt aagccctgct agaactcttt atcttgacgc tgacataaaa gatgttgcac
     1321 ttagtgatga tggtattttt atactagaaa aagatggcac tattattaaa actgattata
     1381 acttaagaaa aattgcagaa aaaaaatttg aatttgctat ttttgtaaaa agcaatatat
     1441 acaataatta tttatatatt tttgaaaaaa caggctatct tatcaaaatg aatctaaatt
     1501 tagataatac acaagtattt aaactttcag aagctgttga taaaatttct ttcatgggga
     1561 atggtaaatt ttactacgga gataaaattt tagatttgct atgataaaaa ttttagaaca
     1621 aacaataaag gctttaaaat taaatttaaa gccctatgac ttaagtatgt tgactagaaa
     1681 aaaaagttat atttgcgcca aagatcaaaa taacattctt tttatgtata caggaaaaac
     1741 aaaattttta atgaaagatg ccttattttt agaaaatcta gcacagcaaa ttaacataaa
     1801 taacaaatat ttttttagca tggcttctct ttgctctaaa gcaaaaaatc atctagaaat
     1861 gaaaggattt aatatctatg ttgctctgtg atattgggaa ttcaaatgct aatttcctag
     1921 atgataacaa atattttact cttagtatag atcagttttt agaattta
//
LOCUS       DAZAND010000150         1932 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.152, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000150 DAZAND010000000
VERSION     DAZAND010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.152"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            44..1903
                     /locus_tag="ACHDOB_001753"
     CDS             44..1903
                     /locus_tag="ACHDOB_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HFN3326657.1"
                     /translation="MREELFLKNTQALFEVDEFLACTLRSLKCLTFALIQDENGINFK
                     KDDIFLYENPNKELLENLTLFKTEYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFE
                     DNLEILTLAFHLFDFSEELKKEQLILFYTPNINTAQLTTLFTYEIIQKSVKIFNLFIH
                     NDFYQQFYSTQIQNINTQLIEMIRFIVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQ
                     EFLKERRAKVENAIIVSTGPSLIKQLPLLKKYTNKATIFCADSAYVILGKYGIKPDYV
                     CMLERDDIVSKCFDNDFGEFNKNILFILASVVHKEVLDFLEKDQRTYMLVHRPLNFAA
                     SLKLDEYGYLGVGHSVSNMIYELAGALRFENIIFIGQDLAYGEDGSSHPKEHIHGSQG
                     EEIRGEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWAKEKLNITTYNCTEGGARIEG
                     TIEKPFLWACENLLDKNLNKPFDFPKFLDKKLAKEKLEKIKKYLQKSILESKEFIKKT
                     QTQLQKLRYTLEKNDKNFQTLGKIKNDLLNLFKEFKKLKLFNELCQAIYFHNECEILK
                     FEVLNTNKQKENLIDFLKIQHNWFIQGLGYLDTQNKTIEKSLENWNFDDIIRK"
BASE COUNT          772 a          255 c          277 g          628 t
ORIGIN      
        1 ttaaagaaag aaaattagat aaatggatgg aaagggtgag aaggtgagag aggaactttt
       61 tttaaaaaat actcaagctt tgtttgaggt cgatgagttt ttagcttgta cactgagatc
      121 acttaaatgc ttaacttttg cacttatcca agatgaaaat ggaataaatt ttaaaaaaga
      181 tgatattttt ctttatgaaa atcccaataa agagctttta gaaaacctta ctctgtttaa
      241 aaccgaatat aacaaatatc ctgttttgtt tttttatggc tttggaaatg gaatgtttta
      301 taaaacttta tgtaaaaaca aacaacataa acacattatc atttttgaag acaatcttga
      361 aattttaact ttagcttttc atttatttga ttttagcgaa gaattaaaaa aagaacaact
      421 aatacttttt tatactccaa atattaatac agcacaactc accacacttt ttacttatga
      481 aatcattcaa aaaagtgtaa aaatttttaa tctttttatc cataatgatt tttatcaaca
      541 attttatagc actcaaatac aaaatataaa tactcaactg atagaaatga tacgatttat
      601 cgttttaaac aaaggtaatg atccacatga ttctttagtt ggaatcaaac atactctaga
      661 taatctccct aaaatgttaa atcatggaat ttttcaagaa tttctcaaag aaagaagagc
      721 taaggttgaa aatgctatca ttgtttctac aggaccaagt cttataaaac aacttccttt
      781 attaaaaaag tatactaata aagctacgat tttttgtgca gatagtgctt atgttatcct
      841 tggaaaatac ggtataaagc ctgattatgt ttgcatgcta gagcgtgatg atatagtttc
      901 taaatgtttt gataatgatt ttggtgaatt taataaaaac attcttttta tacttgcttc
      961 tgtagttcat aaagaagtat tagatttttt agaaaaagat caaagaactt atatgcttgt
     1021 acatcgccct ttaaattttg cagctagttt aaaacttgat gaatacggat atcttggagt
     1081 aggacacagt gtttcaaata tgatctatga actagccgga gccttaagat ttgaaaatat
     1141 catttttata ggacaggatt tagcttatgg cgaggatgga agttcacatc ctaaagagca
     1201 tatacatgga agtcaaggtg aagaaatcag aggagaaaaa tatacactag cttatggagg
     1261 aaaaggcaaa gtaagaactc aactcacttg gaatttattt cgtcaagctt ttgaaaaaga
     1321 tatattttgg gcaaaagaaa aactcaatat caccacctac aactgcaccg aaggtggagc
     1381 aaggatagaa ggaaccatag aaaaaccttt tttatgggct tgtgagaatt tacttgataa
     1441 aaatttaaat aaaccttttg attttccaaa atttctagat aaaaaactag ccaaagaaaa
     1501 attagaaaaa ataaaaaaat atctccaaaa aagcatttta gaatctaaag aatttataaa
     1561 aaaaactcaa actcagcttc aaaagcttag atacacttta gaaaaaaatg acaagaattt
     1621 tcaaactctt ggaaaaatca aaaatgatct tttaaatctt tttaaagaat ttaaaaaact
     1681 caagcttttt aatgaacttt gtcaagctat ttattttcat aatgaatgcg aaattttaaa
     1741 atttgaagtt ttaaacacaa ataagcaaaa agaaaattta atagactttt tgaaaataca
     1801 acacaattgg tttatccaag gtttaggata tcttgatact caaaacaaaa ccatagaaaa
     1861 aagtttagaa aattggaatt ttgacgatat aatcagaaaa taattaggat ttccaatgac
     1921 cttcacccct ac
//
LOCUS       DAZAND010000151         1913 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.153, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000151 DAZAND010000000
VERSION     DAZAND010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.153"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..631
                     /locus_tag="ACHDOB_001754"
     CDS             <1..631
                     /locus_tag="ACHDOB_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFN3326658.1"
                     /translation="FCKFVLTLVFCSSFALANNSFITLNPSLPNSENSVIEAFSYKCI
                     HCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNGKDAS
                     YSDSLSHKLADVYFVSYFLNKQRNFSNLDEFYDIGLKAMNVNKNEVLNFLNTPKAKEI
                     LSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(665..1651)
                     /locus_tag="ACHDOB_001755"
     CDS             complement(665..1651)
                     /locus_tag="ACHDOB_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFN3326659.1"
                     /translation="MNKFSIVLTLLLCGSCALALDPNLEKTKSATGIDLPTAKWNLPK
                     ALNEDGTIDETKMPKNSEYSKMVILGNKILNETSKYVGPQAKDPKKRFAGNNLSCSSC
                     HANGGSVQNQSGFVGIWARFPQYNARGDKVITLADRINGCFERSMNGKRMPSDTPEMK
                     AMLTYMQWLSQGVPVGAKIEGQGLKKIDFISRAADPKKGKAIYMDKCAVCHQENGLGL
                     KNEDSAGAYYLYPPLWGDDSYNTGAGMYRLIKAASYIKENMPQGAPDLSLEDAYDVAA
                     YMNSQARPIKANRDKDFPDRKVKPLDMDVGPYDDSFFTTQHRYGPYTNMIKK"
BASE COUNT          647 a          322 c          265 g          679 t
ORIGIN      
        1 tttttgcaaa tttgttttaa cgcttgtatt ttgttcaagt tttgcattag caaataatag
       61 ttttattacc cttaatccaa gtttacccaa ctctgaaaat agtgtaatag aagcattttc
      121 ttataaatgt atacattgtt ataatcatca taaatttgga actcttgaaa aactaagaga
      181 agcttttcca aatttacatt ttaaactcta tcctgtaagt ttaatgaatg gggaattttc
      241 caaagaaatg aatgagcttt ttgcctttgc tcaatacaaa gatgagcaaa atggtaaaga
      301 tgcgagttat tctgatagtt tatctcataa acttgctgat gtttattttg tttcttattt
      361 tttaaacaag caaagaaatt tttcaaattt agatgaattt tacgacatag gcttaaaggc
      421 tatgaatgta aataaaaatg aagtattaaa ttttttaaat accccaaaag ctaaagaaat
      481 tttaagcgag tttcaaagag ctaatgatat agctaaaacc tatggcaccc ctgcttttgt
      541 tgttaatgga aaatatcaaa ttaacccaag cgcaatcaat tcaatgcaag atttagaaga
      601 tctagttaaa aaattaagca atatgaaata ataaattttt aaggcaataa aaattgcctt
      661 aaaattattt tttgatcata tttgtataag gtccatagcg atgttgggtt gtaaaaaagc
      721 tatcatcata aggtcctaca tccatatcta aaggcttaac ctttctatct ggaaagtctt
      781 tatctctatt tgctttaata gggcgagctt gtgaattcat gtaagctgct acatcataag
      841 catcttcaag acttaagtca ggcgcacctt gaggcatatt ttctttaata taagaagcag
      901 ctttgataag acgatacatt ccagctcctg tattataact atcatcaccc caaagtggtg
      961 gataaagata atacgcccct gcgctatcct catttttaag ccctaagcca ttttcttgat
     1021 gacaaacggc acatttatcc atataaattg ccttaccttt tttaggatca gctgctcttg
     1081 agataaaatc tatcttctta agtccctgcc cttctatctt agctcctact ggaactcctt
     1141 gagataacca ttgcatataa gttagcatgg ctttcatttc aggtgtatcg ctaggcattc
     1201 ttttgccatt catagagcgt tcaaaacagc cattgatcct atctgctaag gtaattactt
     1261 tatctcctct ggcattatat tgtggaaatc ttgcccaaat tcctacaaaa cccgattgat
     1321 tttgcacact tccaccatta gcatgacagc ttgaacaaga aagattattt cccgcaaatc
     1381 tttttttagg atctttggcc tgtggaccca catatttgct tgtttcatta agaattttat
     1441 ttcctaaaat aaccattttg ctatattctg aattttttgg cattttagtt tcatctatag
     1501 tgccatcttc atttaaagcc ttaggcaaat tccatttagc agtaggcagg tcaatacctg
     1561 ttgcactctt ggttttttcc aaatttggat ctaaggctaa agcacaactt ccacataaca
     1621 acaaagttaa aactatagaa aatttattca tcaattttcc tccttatttt gcgtaattta
     1681 aattcagtat aagactttat ttagaaaaag tcaataaaac ctaattacat tttaagaaaa
     1741 aagctttaaa ccttaaaata atattcattt atatttaaaa tagaacttat aaatatttaa
     1801 agcaaaaata aagttttttc gctataataa aatcttgcaa tatttttaaa ggttaggtta
     1861 atgaaaaatt taagcattca agaaaaaaaa gacttagaca actgtgtttt tca
//
LOCUS       DAZAND010000152         1853 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.154, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000152 DAZAND010000000
VERSION     DAZAND010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.154"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..518)
                     /locus_tag="ACHDOB_001756"
     CDS             complement(<1..518)
                     /locus_tag="ACHDOB_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HFN3326660.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNVKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEIFAYKNFFI"
     gene            complement(515..994)
                     /locus_tag="ACHDOB_001757"
     CDS             complement(515..994)
                     /locus_tag="ACHDOB_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase family protein"
                     /protein_id="HFN3326661.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKENEKTIGYMIYFYTFSSFWGSGGIYLEDIYIREDFRKKGYGKAVF
                     KFLGEICKKENLKRLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            1125..1259
                     /gene="rpmH"
                     /locus_tag="ACHDOB_001758"
     CDS             1125..1259
                     /gene="rpmH"
                     /locus_tag="ACHDOB_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HFN3326662.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            1256..1582
                     /gene="rnpA"
                     /locus_tag="ACHDOB_001759"
     CDS             1256..1582
                     /gene="rnpA"
                     /locus_tag="ACHDOB_001759"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HFN3326663.1"
                     /translation="MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            1579..>1853
                     /gene="yidD"
                     /locus_tag="ACHDOB_001760"
     CDS             1579..>1853
                     /gene="yidD"
                     /locus_tag="ACHDOB_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HFN3326664.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFKGGFDYPRVSKNFYPMNLCFKPIFLAKKQLCF"
BASE COUNT          681 a          258 c          239 g          675 t
ORIGIN      
        1 attatgaaaa aatttttata agcaaaaatt tcacctttta aaatgtgata atctttaaat
       61 cccaagcttt taaatgtgta ttctcctaga caaagcaaaa aagcaggttg aatcagtttt
      121 agttcgttcc agaaaaatgg taagcaagat tgtagcgaaa aatcatcaaa ttttccatta
      181 caaaaacatt taaatagata agaaaaataa aaatcttcat cgcaaagccc taaaatttga
      241 taaatatagt gttttaattt ttcacctttt tttgaattaa gtaaaattcc actttcattt
      301 tcactctttt gcccaaaaac atcaagaatt agcaatttga cattttttat cttaggctcc
      361 ataagactaa attttcttgt tttggaaaat tggcataagg tgcaagatga aacaagttgt
      421 tttaattctt gaaaattttg tacttgttca aaatggtttg tatgtgtatc aacaaagtta
      481 aaccccatag cttttaaata ataaagactt cttatcataa atcacacaat ttttctaaat
      541 tttctccact tagacgataa tttctccatt gtttaagatg tttagcgttt aaactttcat
      601 aaaaattaat acctaaaata ttatcattta agcaaaccca gtcaagtctt tttaaatttt
      661 cttttttgca aatttctcct aaaaatttaa aaacagcttt tccataacct tttttacgaa
      721 aatcttctcg tatataaata tcttcaaggt aaattccacc gctgccccaa aaagacgaaa
      781 aagtataaaa ataaatcata tagcctatag ttttttcatt ttcttttaac aaaaaagcac
      841 gagcaaattt attttttagt aaagaatgtt ccagtttttc tttcgtgcat tgaagaaaat
      901 ctaacatatc ttcgtatttt gcaaattcta tgatcatctc ttgtaaaata tctaaatctt
      961 cttgtcttaa atcaataatt ttaaattctg acatttttaa ccttttaaaa ataatttcaa
     1021 aatttatcaa aagaatttaa aaattactct taatcaaaag caatttataa gtaagattaa
     1081 gataaaatac aagtttattt tataattttt taaggaaaaa tcaaatgaaa agaacttatc
     1141 agccacatgg cactccaaga aaacgcactc atggtttccg tgttcgtatg aaaactaaaa
     1201 atggtcgcaa ggtgatcaat gcaagacgcg ctaaaggtag aaaaagactt gctgtgtgaa
     1261 aaattttgat aaatttagca caaacgagga attttcatct gtatataaag taggtaaaaa
     1321 atggcattgc gaaggtgtga tcatttttta tctgaatagt tatgaaaaaa aaatagcagt
     1381 tgttgctagt aaaaaagttg gaaaagcagt ggttagaaat cgttcaaaac gaattttaag
     1441 ggctttgttt gctaagtttg aaagatatct tcaagatggc aaatatattt ttgtagctaa
     1501 aaatgaaatc actgaacttt ctttttctag gttagaaaaa aatctaaaat ggggattgaa
     1561 aaaactagaa tgtttcaaat gatatgccta aaaatactcc gtttttatca gaaattctta
     1621 agccctttaa aacccgctgc ttgtaggtat tatcctagtt gttctgagta tgcgctttgg
     1681 cagtttcaaa aaaagaattt ttttctagct tttttttcta ctttttttag aattttaaga
     1741 tgtaaccctt tttttaaagg gggttttgat tatcctagag tttctaaaaa tttttatcct
     1801 atgaatttat gttttaagcc tatattttta gcaaaaaaac aactttgttt ttt
//
LOCUS       DAZAND010000153         1772 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.155, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000153 DAZAND010000000
VERSION     DAZAND010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.155"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            54..395
                     /locus_tag="ACHDOB_001761"
     CDS             54..395
                     /locus_tag="ACHDOB_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HFN3326665.1"
                     /translation="MACGSSNPEDLAKNFTKDLYSGDAKSVMSYIDLSEAKSDEEKTF
                     VSGKITQVVAENAAKAKRMGGVKDIQIEEKTINEDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDGKWLVLLK"
     gene            379..984
                     /locus_tag="ACHDOB_001762"
     CDS             379..984
                     /locus_tag="ACHDOB_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiX/YebB-like N1pC/P60 family cysteine
                     hydrolase"
                     /protein_id="HFN3326666.1"
                     /translation="MFYLNKILYFVLILFLLIGIWGFFLNSNPSNQIIKKPHLPSLEI
                     GDLVFRAGIGSESFLIENLSQSPYSHIAMVVKTSPTMLIHVTTDDDKNAKNQVILSSM
                     DDFLKLSHKIAIKRLKFDEKTKQNIVTKALEHLGRKFIISTDKDAFYCTTFLEQSINS
                     ITPFHLQYTLIKAPFNEGLYLFPQTFFENNQSVLIYESQNF"
     gene            1048..1395
                     /locus_tag="ACHDOB_001763"
     CDS             1048..1395
                     /locus_tag="ACHDOB_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326667.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGTPATPNTQAIPV
                     ARKIEIQCYKKAY"
     gene            1530..>1772
                     /locus_tag="ACHDOB_001764"
     CDS             1530..>1772
                     /locus_tag="ACHDOB_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013463392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326668.1"
                     /translation="MKKWIFIVFCFILGFIIHIFYIGYTNELLFNKFIKNSNPDYTIT
                     DIYFKKGFLTSKGSFTLNHSHTQLSTKINLKFNNYFF"
BASE COUNT          662 a          250 c          223 g          637 t
ORIGIN      
        1 aaaaatgaaa tttttcaaac tttctttctt ggttttagtt gccttttttt atagtggctt
       61 gcggttcttc aaatcctgaa gatttagcta aaaattttac aaaagatctt tacagtggtg
      121 atgctaaatc tgttatgagt tacattgatc ttagcgaagc taaaagtgat gaagaaaaaa
      181 catttgttag tggtaaaatc actcaagttg ttgctgaaaa tgcagccaaa gcaaaaagaa
      241 tgggtggtgt taaagatatt caaattgaag aaaaaacaat caatgaagat tctgctaaaa
      301 tcagagtttt agtgttattt aacaatgata ataatcaaag cagcaatgtt tttcttgcta
      361 aaaaagatgg aaaatggctt gttttactta aataaaattt tatattttgt cttaatttta
      421 tttttattga ttggaatttg gggtttcttt ctaaattcca atccttcaaa tcaaatcatc
      481 aaaaaacccc atctaccttc tcttgaaata ggcgatcttg tctttcgtgc aggaatagga
      541 agtgaaagtt ttttaataga aaatttaagt caaagccctt attctcatat cgctatggta
      601 gttaaaactt ctccaactat gctcatacat gttacaacag atgatgacaa aaacgctaaa
      661 aaccaagtta tcttaagctc tatggatgat tttttaaaac tgagtcataa aattgctatt
      721 aaaagattaa aatttgatga aaaaaccaaa caaaatatag ttactaaagc tttggaacat
      781 ttaggcagaa aatttatcat aagtacagat aaagatgctt tttactgcac tactttttta
      841 gaacaatcta ttaactccat taccccattt catcttcaat acactctaat caaagctcct
      901 tttaatgaag gtttatatct ttttccacaa actttttttg aaaataatca aagcgtatta
      961 atttatgaaa gtcaaaattt ttaatttcac attcacttca cttaaaaatt ttataatgtc
     1021 atcactttac attaaggaga aataattatg aaaaaaagta ttttattcgc atcagcactt
     1081 ttagctagct caatgctttt tgcagatagt ctaaaacttg aaggtactat tgcacaaatt
     1141 tatgataaca ataaaacctt gcttattgac tctatttatg gcggacaaat ggctataaaa
     1201 gttctaccaa ataccgaaat agaaatggat gattgtggta tttttggaac agataaagat
     1261 ggaactttta aagatttaca ggttggaaat tttttagaaa gtaaaatttc ttatggaaca
     1321 cctgctacac caaatactca ggctattcca gtagctagaa aaattgaaat tcaatgttat
     1381 aaaaaagctt attaatataa atcccttaac aagggattta taaaaatcat tctttactaa
     1441 actacttcat cactcttaaa taaaaattta aactcttttt taacaagcaa tttataaaat
     1501 aacacttata ttttcatcta aggcaaataa tgaaaaaatg gatttttatt gttttttgtt
     1561 ttatattagg ttttattatt catatatttt atataggata cactaacgaa cttttattta
     1621 ataaatttat taaaaacagc aatcctgatt atacaattac agatatttac ttcaaaaaag
     1681 gttttttaac ttctaaagga agttttactt taaatcactc tcatacacag ctttcaacca
     1741 aaatcaacct taaatttaat aattattttt tc
//
LOCUS       DAZAND010000154         1713 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.156, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000154 DAZAND010000000
VERSION     DAZAND010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.156"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..>1713)
                     /locus_tag="ACHDOB_001765"
     CDS             complement(<1..>1713)
                     /locus_tag="ACHDOB_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HFN3326669.1"
                     /translation="SYTQSCRKFFLKQGAFSLYHSKNMDNFIKKAYDIVLKDYFDDFS
                     PPSDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPMIKAFIEILNDAHLQ
                     IDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKTKFESILKENKNDFAKLLL
                     ENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNYALNFIDEKNLSELR
                     LAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHFGANELLVQKALQSM
                     HTIGFYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDKQVIFDLNLVFALRR
                     LKYSKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPFWTVRFLSDEEGNYS
                     FDEQVFLMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIESENEISLAGIYRAYC
                     SKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSKLENLENLELLYTLT
                     WLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKELTLKRSKIFLEQDE
                     ILQD"
BASE COUNT          622 a          280 c          177 g          634 t
ORIGIN      
        1 ttatcttgca aaatttcatc ttgctctaaa aaaatcttac ttcttttaag tgttaattct
       61 ttttttactc ttcttgcgct ttcttcaagt agattttcat cttcaaaacc ttgttttgca
      121 ttttctaaaa gtttatcaag aactctaaaa taaaaagcat tataatttaa agccttagcc
      181 tttagccaag ttaaagtgta taaaagctct aaattttcta aattttctag cttagaaacc
      241 aagctactta caacaatagg attgtatata tcttcttttt ctacaagatc ttttaaggca
      301 ttattgtttt taaatatctt aagaccccat tctaaaattt cattctttaa atcaaatttg
      361 gagcaatacg ctctatatat gcctgctaaa gaaatttcat tttcactttc tatagcgctt
      421 aaaagtatca caagctttaa aatcattttt tcatcggttt taagtttttg gagtatctca
      481 agctcatctt cgtatttttc aaattcactt aacataagaa aaacttgctc atcaaaacta
      541 taatttcctt cttcatcgct taaaaaacga actgtccaaa aaggcttgca taaatctttt
      601 aaaattccac tatcaagcaa aagttttaaa acacaaaaac tatgcctttt ataaaaaatt
      661 ttctcaaaaa gtattaaagc tttttctata tcttttttac tgtatttcaa tcttcttagg
      721 gcaaaaacca agttaagatc gaaaataacc tgtttatctt caagttttaa taagtattct
      781 aaaacttcca caagagtttt aaatttatat tcttgtttaa gagtatgatt taatccatct
      841 tgaatttgct ttgctagaaa gtgcgtataa aaacctatag tatgcatact ttgcaaagcc
      901 ttttgaacca acaactcatt tgctccaaaa tgttttttag cttttttata cattaattca
      961 ctcaaatcat gaacattaat aagtaaaaac tcatcctcat ctttagcgct taataaattc
     1021 atcgctgatt ttaaagaaag taaaaaatct ccagctaaac gcaactcact taaatttttt
     1081 tcatctataa aatttaaggc ataatttttt ggagaagtct taaaaagaac aagcaaactc
     1141 tctaaggatc ttaaatgatt taatccgcca aaatctttta agatattaaa ttcctgcttt
     1201 ataaatggaa tatcaaattc tttaaaattt tctagcaaaa gcttggcaaa atcattttta
     1261 ttttctttta aaatactctc aaattttgtc ttaatccctt taaataaaat cctagaacca
     1321 catatgaaac gagtttgtat tatagaagtc ttaagctcat tgctagcatt ataaagtccg
     1381 ttaaattcta agataacaga gtcaatttgc aaatgcgcat catttaaaat ttcgataaaa
     1441 gccttaatca taggttttaa atgaaaagcc ttaatatctt tataaacaaa aatcaaagaa
     1501 atactttcat taaaacaaag actattattt gcatatgctt tgcttgctaa aacacaaaaa
     1561 gggatattat cacttggagg tgaaaaatca tcaaaataat ctttaagaac tatatcataa
     1621 gcttttttta tgaaattatc catattttta gaatgatata agctaaacgc cccttgctta
     1681 agaaaaaatt ttctacaact ttgggtatag gaa
//
LOCUS       DAZAND010000155         1613 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.157, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000155 DAZAND010000000
VERSION     DAZAND010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1613
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.157"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            96..470
                     /locus_tag="ACHDOB_001766"
     CDS             96..470
                     /locus_tag="ACHDOB_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HFN3326670.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERARSEIFFNKKVDIFDAS
                     KGHFLLAKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILLFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            complement(462..>1613)
                     /locus_tag="ACHDOB_001767"
     CDS             complement(462..>1613)
                     /locus_tag="ACHDOB_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326671.1"
                     /translation="LLNAKEQKLVDVKPVENFYPKLSVQECNTNCLFDLLESRLYLSF
                     LSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEKTIKSYSNTIINSS
                     IAYLLRQRAEIKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGFTLKGANELKNYSG
                     NMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAIFSDGSALSSNLNS
                     RILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNTPLIKTALASSQLRIYNIH
                     PYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNEIFNQSIDYNWIAY
                     ATSIGVDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASFEELK"
BASE COUNT          547 a          197 c          263 g          606 t
ORIGIN      
        1 ggaatttttt aatataaact aaaaagcgat atcaaagaat ttccgttgta taatccaatg
       61 ttttttaaat gtaaaatatt ttttaaggta aagcgatgaa aatgcgtgtg tattatgaag
      121 atactgatgc gggtggagtg gtgtatcata gtaattattt aaaattttgc gagagagcaa
      181 gaagtgaaat ttttttcaat aaaaaagtag atatttttga tgcgtctaag ggacattttt
      241 tgcttgcaaa agcaaattgt aatttcttaa aacctgcaaa acttggagat atgatagaga
      301 ttaaaacaaa aattttagaa gtcaaaaatg cttctgtgga aattttacaa gaaatttata
      361 aagatgaaat tttgcttttt aaaatggaat taactttagc ttttattaaa aacgaaaaac
      421 cagctagaat ggatatgcag ttaaaaaagc tctttgaaga attattttaa ttcttcaaag
      481 cttgcttgtt tgccttgcat aagacgcact ttgtaatcaa cttgagaatt tttgattttc
      541 tcatcaaata aactttcgct ttttttattt aagaattcgg tataaaagta atcaactcct
      601 atactagtag cataagcaat ccagttataa tctatacttt gattaaaaat ttcattaaga
      661 tagactaagt tatcatcgtg gttattgatg gaattagcaa tgatgaaatt ttctctatct
      721 ccttgttgtg ttaaacttaa aaatgttgga ttatagttga tttgagtgga taaaagcaca
      781 taaggatgaa tgttataaat tcttagttga gaacttgcta gagctgtttt gatcaatgga
      841 gtgttaaaaa atattgaggc attattaact ccaccttgtg atcttaaaag cctgctaaaa
      901 tcaagcttct cgccttctat ggtatatatt ctagcattat tattttgagc aagaattctt
      961 gaatttagat tgcttgataa agcagagcca tcgctaaata ttgcgatatt agcatttgat
     1021 ttgcttaaaa gtgtggcaat ttgagcatca tagtcaatac ttccaaaaat aatattttga
     1081 tttgaaattt gtatgttgtt tttatggata gttggtatga aaattttcat atttcctgag
     1141 taatttttca actcgttagc accttttaga gtaaatccag ctatggcata ctgatatcct
     1201 tgagcttgtg ctgcatcaag tgcggctcgg attttatcac tatcttctgt gccggttaaa
     1261 aaaactttta ctttgatttc agctctttgt cttaaaagat aagctatgct tgaatttatt
     1321 atagtatttg agtaactttt tatagttttt tctgggataa ttatcgcaag tttaacagaa
     1381 gtaatttttt gaacattttt ttcaaaatca gtaatggaat ttaataattt tgcataaaca
     1441 ttagatagaa attgatcgtt ttgatctgca aattcactta aaaaactgag atacaatctt
     1501 gattctaaaa gatcaaaaag acagtttgtg ttgcattctt gaacgcttaa tttaggataa
     1561 aaattttcaa caggttttac atcgactaat ttttgctctt ttgcattaag caa
//
LOCUS       DAZAND010000156         1583 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.158, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000156 DAZAND010000000
VERSION     DAZAND010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.158"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(87..1433)
                     /locus_tag="ACHDOB_001768"
     CDS             complement(87..1433)
                     /locus_tag="ACHDOB_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HFN3326672.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LEQLGFGVGAALGVKGGVFDIKTLVAFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVLDRASGGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFSAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
BASE COUNT          638 a          307 c          172 g          466 t
ORIGIN      
        1 cgcttatatt tttataaatt tttgactcaa aaatatcata aaacaatgaa ccaatcattg
       61 aaaaatcaaa agttctttta ttttaattat attatcccag ctacctcagc aaaaatcaag
      121 caaataatac ttatacccca tatataaaaa aagcttcttt tgatatgatc tttaatatta
      181 acctctgcta aaccacaacc tagcaaagtt gcaggcacaa caggagaaat aaatgtcgca
      241 caatttcttg ctatcaccat gataatagct atagtcaaag gttcagcact aaaagcctta
      301 gttacactca aaactatagg catcactcca taaaaataag aatctgtaca aaaaataatt
      361 gccattggaa cagccaatat ccctaccatc aaaggaatat aagcgcctaa ataatctgga
      421 acaaaattta aaatcaaaac acccattttc tccataatac cacttttatc aaatacgcct
      481 attaatatcc cagcaccaat taaagtaata tacataagca ttgcaccacc acttgcacga
      541 tctaaaactt ttttagctgt ttttaaatta ggataattaa gcggtaaaat tattgcaagt
      601 cctatcataa agcaaatata actaggaata atgccgctaa ttaaaagccc aataacccca
      661 atagctacaa gtaaatttaa ccaaaaccat ttttcattat ggtgttcgct tttttctata
      721 tttaaattta ttccagacaa gttacctgcg cctgcacctc tttttatttc tatcttagca
      781 atccaaattg ccaaaagaag ggataatacc aaacctacaa tctgaatagg tataatatgg
      841 tgccaaagca aatttgcatc cattcctata ttagtagccg ctcttaaagt aggaccaccc
      901 caaggaataa cattcataac ccccatagcc gaagtaataa tcaataacat tgaagtcttt
      961 cttataccta aacgctcata aataggtaat aatgcaggta ttacaataag aaaagtagaa
     1021 gcacctgaac catctaaatg cacagcagca gcaataaaaa cagtaagaat gcaaacttga
     1081 tatacattag ctttcatttt tgataaaaat gcatttaaaa ttttagtaaa aaaaccactt
     1141 gcatttaaaa cactgaaaaa gagtatagaa aaaacaaaca aagctgccgt atccgttacg
     1201 cttttgactc catctttaat aaaagcaacc aatgttttaa tatcaaaaac acctccttta
     1261 acccctaaag ctgcacccac gccaaaacca agttgttcaa gaataagtaa aatacaagct
     1321 acactaatac ttacacttat aaaagctaat gctggagtag tataatcttt tagcaaaagc
     1381 caaactatca atcctaacga gaaaaaacct aataaagcta aaaaaatttc catatcctat
     1441 ccttttgtat catttttatt cgataataaa ataggatatt ttaagtccaa cttatatgtg
     1501 tttaaattta tagctttttg aaaaaaatat attttctaat gtaaccattt taaacaagaa
     1561 taaaaaaata attttgaatt att
//
LOCUS       DAZAND010000157         1386 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.159, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000157 DAZAND010000000
VERSION     DAZAND010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1386
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.159"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            20..424
                     /gene="wlaRB"
                     /locus_tag="ACHDOB_001769"
     CDS             20..424
                     /gene="wlaRB"
                     /locus_tag="ACHDOB_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class E lipooligosaccharide biosynthesis
                     3,4-ketoisomerase WlaRB"
                     /protein_id="HFN3326673.1"
                     /translation="MKNYKILKLDAIKDDRGKLVALESNKEIPFEIKRVYYIFDTDPN
                     FPRGAHAHKNLEQVLIMMSGSCDIILNDGKNCEKICLNRPDMGLYIGKNMWREMKNFS
                     YGAKLLVLASDFYDEKEYIRNYDEFLRNINDT"
     gene            414..881
                     /locus_tag="ACHDOB_001770"
     CDS             414..881
                     /locus_tag="ACHDOB_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HFN3326674.1"
                     /translation="MIHKMSDVQSSNIGKNTNIWQFCVVLPNAKIGDNCNICSHCFIE
                     NDVVIGDDVTIKCGVQIWDGITIEDNVFIGPNVTFCNDKYPKSKQYPKEFLKTIIKKG
                     ASIGANATILPGVIIGENAVIGGGLSLQKILQPIQLIIAKLFQNNNFLQGLCK"
     gene            878..>1386
                     /locus_tag="ACHDOB_001771"
     CDS             878..>1386
                     /locus_tag="ACHDOB_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFN3326675.1"
                     /translation="MSDFCIIGKNINMYLVDDEDAGFIFELRSDVVKNKFLNKIDNDI
                     KKQREWIRLYKKREKNKKEFYFTIRNKNNEKLGLVRLYDFIDDSFCWGSFIIKHGVAF
                     YISIEVVMNVYEFAFYNLGFNASHFDVRKDNDRVIAFHKKFGAKIIKEDIDNFYFNIS
                     KQEYEIAKE"
BASE COUNT          564 a          113 c          254 g          455 t
ORIGIN      
        1 atcatgcctt aaaagtggca tgaaaaatta taaaatttta aagttagatg ccataaaaga
       61 tgatagaggt aaattagtag ctttagaaag caataaagaa attccatttg agataaaaag
      121 ggtgtattat atatttgata cagatccaaa ttttccaaga ggagcacatg cacataaaaa
      181 tttagagcaa gtgcttataa tgatgagtgg ttcttgtgat ataatactaa atgatggaaa
      241 aaattgtgaa aaaatttgtt taaatcgtcc tgatatgggt ctttatatag gtaaaaatat
      301 gtggagagaa atgaaaaatt tttcttatgg agcaaaattg ctagttttgg caagtgattt
      361 ttatgatgaa aaagagtata taagaaatta tgatgaattt ttaaggaata ttaatgatac
      421 ataaaatgtc agatgtacaa agtagtaata taggtaaaaa tacaaatata tggcaatttt
      481 gcgtagtttt acctaatgct aaaataggag ataattgcaa tatatgttct cattgcttta
      541 tagaaaatga tgttgtgatt ggagatgatg ttacgattaa gtgcggggtt caaatatggg
      601 atggtataac aatagaagat aatgttttta tagggccaaa tgtaacattt tgcaatgata
      661 aatatccaaa atcaaaacaa tatccaaaag aatttttaaa aactataatt aaaaaaggcg
      721 cgagtattgg tgctaatgcg acaattttac caggtgtaat tataggagaa aatgcagtga
      781 tagggggggg gctatcgtta caaaagatat tgcagccaat acaacttatt attgcaaaat
      841 tatttcaaaa caataatttt ttacaaggat tatgcaaatg agtgattttt gcataattgg
      901 aaaaaatatt aatatgtatt tagttgatga cgaagatgct ggatttattt ttgaactcag
      961 aagtgatgtt gtaaaaaata aatttttaaa caaaatagat aatgatataa aaaagcaaag
     1021 agaatggatt agattatata agaagagaga aaaaaataaa aaagaatttt attttacaat
     1081 cagaaataaa aataatgaaa agttaggcct agttagattg tatgacttta ttgacgattc
     1141 tttttgctgg ggaagtttta taataaaaca tggggttgcc ttttatatat ccatagaggt
     1201 tgttatgaat gtgtatgaat tcgcatttta taatttaggt tttaatgcta gtcattttga
     1261 tgtaagaaaa gataacgata gagttatagc ctttcataaa aaatttggtg ctaaaattat
     1321 taaagaagat attgataatt tttattttaa catttcaaaa caagaatatg aaattgcaaa
     1381 agaaaa
//
LOCUS       DAZAND010000158         1379 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.160, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000158 DAZAND010000000
VERSION     DAZAND010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1379
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.160"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            99..>1379
                     /locus_tag="ACHDOB_001772"
     CDS             99..>1379
                     /locus_tag="ACHDOB_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HFN3326676.1"
                     /translation="MEKFIERLLEEDIKFEKDVNNGLSDINIFDALNIETKENYHSKF
                     IAYLIDINKDHYQKNFAKVFLEKLGKSLVNTKFENLNIEDIKSVETEACIKDNRRIDI
                     LITLSDKRYIIIENKIYAKDQKNQLKDYINFVRKNIKNIKDCYKNILTIYLHQDECAS
                     PSDYSLGNFTIKTNLIKDKNENNVSYYLKMDYIWIKEWIDECIKIYEEKSTKDQKFIL
                     DIQNIIFTLNQYKSILQWYMTDEYTQRDDVLEFIFQNNIKMQNLKNAMILYRYNKNKS
                     ELKNLNEENYKKAKDIIQHKWSNICEYIIEEFFDSFEHKEIKIGDITFIGNKIEENRV
                     NHGVFIFYPIDYKNESIYPCIYIYFKKKYYDIIGLTFEISNDDEEDIENEKYKECLKL
                     FKDVKEENVRKYQNHYYCDKLINNEKLEGEYAFIY"
BASE COUNT          635 a           93 c          194 g          457 t
ORIGIN      
        1 tctacttaac ttgcctataa aattaataat cagttttttt agtttgtaat taaaaattta
       61 tttacatgta aaattgtata aaatttggaa agtgatacat ggaaaaattt attgaaaggt
      121 tgcttgaaga agatattaaa tttgaaaaag atgtgaataa tggtttgagt gatataaata
      181 tatttgatgc tttgaatatt gaaacaaaag aaaattatca ttctaaattt atagcttatt
      241 taattgatat aaataaggat cattatcaaa aaaattttgc aaaggtattt ttagaaaaac
      301 ttggtaagag tttagtaaat acgaaatttg aaaatttaaa catagaagat ataaaaagcg
      361 tagaaacaga agcctgcata aaagataata gaaggataga tattttaata acattaagtg
      421 ataaaagata tattataata gaaaataaaa tttatgcaaa agatcaaaaa aatcaattga
      481 aagattatat taattttgta agaaaaaata tcaaaaatat aaaagattgt tataaaaaca
      541 tattgactat atatttgcat caagatgagt gtgctagtcc tagtgattat agtttgggaa
      601 attttacaat aaagacaaat ttgattaaag ataaaaatga aaataatgtt agctattatt
      661 tgaagatgga ttatatatgg attaaggaat ggattgatga gtgtataaaa atatatgaag
      721 aaaaatcaac caaagatcaa aaatttattc ttgatataca aaacattatt tttactctaa
      781 atcaatacaa aagtatttta caatggtata tgacagatga gtatactcaa agagatgatg
      841 tactagaatt tatttttcaa aacaatataa aaatgcaaaa tttaaaaaat gcgatgattt
      901 tatatagata taacaaaaac aaatcagagc ttaaaaattt aaatgaagaa aactataaga
      961 aagctaaaga tattatccag cataaatgga gcaacatctg cgaatatata atagaagaat
     1021 tttttgatag ttttgaacat aaggaaatta aaataggtga tataactttt atcggcaata
     1081 aaatagaaga aaatcgtgtt aatcatggtg tgtttatatt ttatcctatt gattataaga
     1141 atgaaagcat atatccatgt atatatattt attttaaaaa aaaatactat gatattattg
     1201 gtttgacatt tgaaatttca aatgatgatg aagaagatat agaaaatgaa aaatataaag
     1261 aatgtttaaa attatttaaa gatgtaaaag aagaaaatgt tagaaaatat caaaatcact
     1321 attattgtga taaattaata aacaatgaaa aattagaagg agaatacgct tttatttat
//
LOCUS       DAZAND010000159         1368 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.161, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000159 DAZAND010000000
VERSION     DAZAND010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1368
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.161"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..>1368)
                     /gene="ciaB"
                     /locus_tag="ACHDOB_001773"
     CDS             complement(<1..>1368)
                     /gene="ciaB"
                     /locus_tag="ACHDOB_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HFN3326677.1"
                     /translation="NNKILSTQFPNLDDAMEFLRKNHLYQKTPEGEICERSYGVLVRI
                     GNLWKFVPYARFFENEILKLEFAFENMIDQLKIFASNEEEKAYIEYFEKLKLAFCEKD
                     EDRVIKTWQEAEFAWMKVKSPLQVGHPLEYYEDNYTHAVALEWDIRIEDENDFDVLKF
                     GNEIKESFEHVYKNIGLEDCELEKEVLSNIEKTQLYICTPMIFYGAELKGLFSAQVVP
                     NDEFVSSKAGKKIFAFINFVYENAKTKPFMKISSEVFDKEFLDFGRNILFYQEKIWKR
                     VYEVSTIGHEFGHIFFIANDTEKTMNQSGFFKNIEEYKATTGGLINFFYHEQDDLIMP
                     VFHELIKRAIGLISWQRVDEVKPYYTEGLIHLSLLFESEVLIFQNNNLKINFDLEHYE
                     KFKELTLKNYHELAKHYALRLDAKEFLSRFCEIEDNIFLPIMPKCKEFVKFYYDLYEK
                     IGNEI"
BASE COUNT          487 a          239 c          121 g          521 t
ORIGIN      
        1 tcaatttcat taccaatttt ctcgtataaa tcataataaa atttaacaaa ttctttacac
       61 ttaggcataa taggaagaaa aatattatct tcaatttcac aaaatctact taaaaactct
      121 tttgcatcaa gtcttaaagc atagtgtttt gccaattcat gataattttt taaagttaat
      181 tctttaaatt tttcataatg ctctaagtca aaatttatct tcaaattatt attttgaaaa
      241 atcaatactt cactttcaaa aagcaaacta agatgaataa gtccttctgt ataataaggc
      301 ttaacttcat caaccctttg ccaagaaata agtccaatag ctctttttat aagttcatga
      361 aaaacaggca ttatcaagtc atcttgctca tgataaaaga aatttataag tccacctgta
      421 gtagctttat attcttctat atttttaaaa aaaccactct gattcattgt tttttcggta
      481 tcattagcaa taaaaaatat atgaccaaat tcatggccta tagttgatac ttcataaacc
      541 cttttccaaa ttttttcctg ataaaataaa atatttcttc caaaatccaa aaattcttta
      601 tcaaaaacct cgctagaaat tttcataaaa ggctttgttt tagcattttc atatacaaaa
      661 tttataaagg caaatatttt tttgcccgcc ttagaactta caaactcatc atttggaacg
      721 acttgagctg agaataaacc tttaagttca gcaccataaa atatcatcgg agtgcaaata
      781 taaagttgag ttttttctat attagataaa acttcttttt ctaattcaca atcttcaagt
      841 cctatatttt tataaacatg ttcaaaactt tccttaattt cattaccaaa tttcaaaaca
      901 tcaaaatcat tttcatcttc tattcttata tcccattcta atgccaccgc atgagtataa
      961 ttatcttcat aatattctaa aggatgtccc acttgtaaag gtgattttac tttcatccaa
     1021 gcaaattcag cttcttgcca agtttttata actctatctt catctttttc acaaaacgct
     1081 aattttaatt tttcaaaata ttctatataa gctttttcct cttcgttgct agcaaatatt
     1141 ttaagctgat caatcatatt ttcaaaagca aattctaatt ttaaaatttc attttcaaaa
     1201 aatctcgcat aaggaacaaa tttccataaa tttcctattc taactaaaac accatagctt
     1261 cgctcacaaa tttctccttc tggagttttt tgatataaat gatttttacg taaaaattcc
     1321 attgcatcat ctaaatttgg aaattgagta gataaaattt tattattt
//
LOCUS       DAZAND010000160         1322 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.162, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000160 DAZAND010000000
VERSION     DAZAND010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1322
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.162"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            5..748
                     /locus_tag="ACHDOB_001774"
     CDS             5..748
                     /locus_tag="ACHDOB_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HFN3326678.1"
                     /translation="MTIDLNHNFTSFVLLDEVDFNFSELKSILEDKFNIKIADENFTK
                     EGVIFSYENMLITLNLIKNPIPNHEAEYYANFNFMWKDALEQTKKHKAHLLIAVLSQD
                     QSKLEQAKMFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYV
                     SVYPSENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKD
                     ILKFEDGKEIKFIKSQGISVENESLKIIF"
     gene            813..1229
                     /locus_tag="ACHDOB_001775"
     CDS             813..1229
                     /locus_tag="ACHDOB_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HFN3326679.1"
                     /translation="MKAKLTLLALLGATVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGDWKEVDGKYKALPHTILPSVMKKVSATQPNA
                     QILEIDKEINGYKFKFNNNMKVYTDMQGNVLGQKLD"
BASE COUNT          504 a          143 c          212 g          463 t
ORIGIN      
        1 taacatgact atagatttaa atcacaattt tacctctttt gttcttcttg atgaagttga
       61 ttttaatttt tcggagttaa aaagcatttt agaagataaa tttaatataa aaatagctga
      121 tgaaaatttt accaaagagg gagtgatttt ttcatatgaa aatatgttga ttactctaaa
      181 tttgattaaa aatcctatac ctaatcacga agcagaatac tatgcaaatt ttaattttat
      241 gtggaaagat gccttagagc aaactaaaaa acataaagct catcttctta tagcggtgct
      301 aagtcaagat caaagcaaat tagaacaagc taaaatgttt acgaaaattg cagctttatg
      361 tttggataat aaacatgctt taggttttta tacaggtgca gttgttttag agcccagttt
      421 ttatatagaa aatgcaaaaa tgttagatga taatcgcttg ccggtatata attggatata
      481 tgttagtgtt tatcctagtg aaaatggagt taatgcttat acttatgggc ttagaaattt
      541 tgataaatta gaacttgaag tttgtgattt aaacatagaa gaaaaagaac ttttcttttg
      601 tatttatgat attgttttgc atattttaac ttatgatatt aatctaaaag ataaagatat
      661 tttaaaattt gaagatggaa aagaaataaa atttataaaa agtcaaggta taagtgttga
      721 gaatgaaagc ttgaaaatta ttttttaagt ttcacattca cttcacagtt ttgagttaaa
      781 ctttcgccaa ccaagacaaa aaaggagaaa ctatgaaagc aaaattaact ttacttgctt
      841 tgttgggtgc tacggtgctt ttagctaaag atatggttgt tcctgctagc gaacttccaa
      901 ataatgccaa agaatttatt tctaaaaatt ttaaaaccgc tcaaattggt ttggtgaaaa
      961 aagatataga ttcttatgat gtaattttaa atgatggaac tgaaattgat tttatgatca
     1021 atggagattg gaaagaagtt gatggaaaat ataaggcttt accacatact attttaccta
     1081 gtgttatgaa aaaagtaagt gcaactcaac caaatgctca aattcttgaa atagataaag
     1141 aaattaatgg ttataaattt aagtttaata ataacatgaa agtttatacg gatatgcaag
     1201 gaaatgtcct aggtcaaaaa ttagattaat ttttgaaaat ttaactctct tagaaaattt
     1261 gatgcaaaaa tttggaagca tagtcttcca aatttttatt ttttgattgc aaaacccaaa
     1321 at
//
LOCUS       DAZAND010000161         1306 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.163, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000161 DAZAND010000000
VERSION     DAZAND010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1306
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.163"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            27..>1306
                     /locus_tag="ACHDOB_001776"
     CDS             27..>1306
                     /locus_tag="ACHDOB_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN3326680.1"
                     /translation="MNFRSLNISTKLILSVAIGVILGIIVLVSTVSIYISENMEKEAK
                     DSIFLASKRYTNYMEGILNETVALTKGTATSLNDMFEHNNQVDADLIESLMKNLFDSS
                     LYSAYTFLYLKDTSVLGDAQGIDKRYTSSDGKTFAMIYFDQTTGKSGGIETIQTPNNF
                     GNLKIIEQVEKNAKYGDKDSLFVGPPTKLNYDGKDFLGINFGMPIFNNKGKLIGVAGY
                     TLDFSEVSETILDPKLDFFEGDLRFLMTDKGVITIHKNHNAILKTLGDINKDPSVELV
                     NNAVKEHKTVIIDDYVASTGDLSYASVSSFSTANNSSHWSMVVTAPKNSVLAPLKKLE
                     IIFIIISFFILLVILIIVYVCVKKIVGSRIPVILKSLENFFHFLNHKKHEVDLISIKA
                     DDELGKMGKMINENILATKKGLEQDNQAVKESVQT"
BASE COUNT          481 a          165 c          207 g          453 t
ORIGIN      
        1 aaatttttaa aagttaagga aaaaatatga attttcgttc tttaaatata agcactaagc
       61 ttattctatc tgtagctata ggggtaattt taggcattat cgtattagtt tcaacagttt
      121 ccatatatat ttctgaaaat atggagaaag aggccaagga ttcaatattt ttagcttcaa
      181 aaagatacac caattatatg gaaggtattc taaatgaaac tgttgcactt acaaaaggaa
      241 ccgcaacttc cttaaatgat atgtttgaac acaataatca agttgatgct gatttgattg
      301 aaagcttaat gaaaaattta tttgatagta gtttatattc agcttatact tttttgtatt
      361 taaaagatac ttcagtgcta ggggatgctc aaggaattga taaaagatac acaagttctg
      421 atggtaaaac ttttgctatg atttattttg atcaaaccac tggaaaatct ggaggaatag
      481 aaacgattca aacgccaaat aattttggta atttaaagat tatagagcaa gtagaaaaaa
      541 acgctaaata tggagataaa gacagtttat ttgttgggcc accaactaaa cttaactacg
      601 atggaaaaga ttttctaggt attaattttg gaatgcctat ttttaataat aaaggtaaat
      661 tgattggagt tgctggatat actttagatt tttctgaagt ttctgaaacc atacttgacc
      721 caaaattaga tttttttgaa ggggatttaa gatttttaat gactgataaa ggtgttatta
      781 ccattcataa aaatcataat gctattttaa aaacacttgg cgatataaat aaagatccct
      841 ctgtggaatt agtcaataat gctgttaaag aacacaaaac tgttataata gatgattatg
      901 ttgcttcaac tggagattta agctatgcat ccgtttcatc ttttagcact gcaaataatt
      961 caagtcattg gagtatggtt gtaactgctc ctaaaaattc agttttagca cctttaaaga
     1021 aactagaaat tatttttatc atcatttctt tttttatact acttgtcata ttgattatag
     1081 tttatgtctg cgttaaaaaa atagttggat ctagaattcc tgttatttta aaatctttag
     1141 aaaatttctt tcatttttta aatcacaaaa aacacgaagt tgatttaatt tcaatcaaag
     1201 ccgatgatga acttggaaaa atgggcaaaa tgatcaatga aaacattctt gctactaaaa
     1261 aaggtttaga acaagacaat caagccgtta aagaatcagt tcaaac
//
LOCUS       DAZAND010000162         1225 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.164, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000162 DAZAND010000000
VERSION     DAZAND010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1225
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.164"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            100..1164
                     /locus_tag="ACHDOB_001777"
     CDS             100..1164
                     /locus_tag="ACHDOB_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HFN3326681.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFRNNTVRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
BASE COUNT          476 a          166 c          186 g          397 t
ORIGIN      
        1 aacaaacttt ttcctaaaaa agcttttttt tactaagtta atactaaaat accttttcta
       61 gttaaaaagc taaaaatttt agatttagga aaagttttta tgaaataccc tttagattgt
      121 gaagaaaatt ttgaaaaatc attcttattt tggctagcaa aatatgtaaa atttaaactc
      181 aactcactat ctaacaaaga gttaaaaaat ccacaagctt tagcagaagt taattttgct
      241 cttacaaaag gtgtaaaaaa cattgatgaa cttgacgctc tagcaaaaaa agcaagaaat
      301 gctggtttaa gtggagttaa tacttatttt aatcctttaa aaaaagtatt cgaatattta
      361 aatttttaca agctttattc tttaaaacag attgatgaag aactcattgt agaagtttta
      421 gcaagtataa caggtgcttt atcagatgca agtaaaaaaa attaccgtat tgctgtgatt
      481 aatttttttg attttttaga caagcaaaat gaagaagatg aaaaagcgca tattttcgat
      541 atcaatctta aaaactgggc aggtatagcg ggttctaaag gggtaaaatt acctgaattt
      601 atgagcgaag aagagcttaa aaaatttctt gatgctattg aaaatgcaga ttttagaaac
      661 aatactgtac gcaataaact tattattaaa atcatcattt ttacaggcat acgggtaagc
      721 gaagctatca atatcaaaat gggtgatatt agcgaagaaa atgatcttta tatcataaga
      781 ataagagcta aaggcaataa atatcgtgtt gtaatgataa aaaaagaact tatttacgat
      841 ttgcttaaaa atgtaagtat taattatatg agcaaagacg ccctactttt tgtcaataaa
      901 aaaggcactc cactgactca atcttatgtc agtcgcatag tagaacagct tttatttcgt
      961 gcaggaattc gcaaacaaaa aaatggtgct cacatgttgc gtcatacttt tgccacccta
     1021 ctttataaaa aacaaaaaga tttagtttta gttcaagaag ctttagggca tgcaagttta
     1081 aatacctcaa gaatttacac tcattttgat aacgataaat taaaacttgc cgcacaggtt
     1141 gcaaaggaat taagtgactc ttgaaaacta tgctattttt ggtaaatatt tttaccatga
     1201 tttaaaacac actttaaaag ccttt
//
LOCUS       DAZAND010000163         1138 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.165, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000163 DAZAND010000000
VERSION     DAZAND010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.165"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..838
                     /locus_tag="ACHDOB_001778"
     CDS             <1..838
                     /locus_tag="ACHDOB_001778"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HFN3326682.1"
                     /translation="VNEIFSKYKINAVINFAAESHVDNSIKNPDIFIKTNIYGTWNLL
                     NSAYKTWFLEPFLKKDEFKQSFFYQISTDEVYGSLGENGKFTEDNAYAPNSPYSASKA
                     SADMLVRSYHHTYGLNAVISNCSNNYGPFQHDEKLIPTIIRNALNNAQIPIYGDGKNI
                     RDWLYVKDHCVAIESIYKYAFEKIKENNSFFDVFNIGTNEEWQNIDIANKICSYLDNV
                     LPKNTSYKEQITFVKDRAGHDRRYAIDPTKLQRVIGWKAQENFNSGLDKTIQWYIKKY
                     KG"
     gene            841..>1138
                     /gene="wlaRA"
                     /locus_tag="ACHDOB_001779"
     CDS             841..>1138
                     /gene="wlaRA"
                     /locus_tag="ACHDOB_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class E lipooligosaccharide biosynthesis
                     3,4-ketoisomerase WlaRA"
                     /protein_id="HFN3326683.1"
                     /translation="MNYTILKFKTINSKNSILNVHQKDVNCPFEIKRIFYIYDFLNDS
                     IRGDHANLNSEFIFIALNGSCEILIDDGQTKQKIILNDKTKGLYIDKMIWKQMYN"
BASE COUNT          481 a          123 c          167 g          367 t
ORIGIN      
        1 ggttaatgaa attttcagca aatataaaat aaatgcggtt ataaattttg cagcagaatc
       61 acatgtagat aattctataa aaaatccaga tatttttata aaaacaaata tatacggaac
      121 ttggaattta ttaaactcag cttataaaac ttggtttctc gaaccttttc ttaaaaaaga
      181 cgaatttaaa caaagtttct tttatcaaat aagtacagat gaagtttatg gatctttggg
      241 agaaaatgga aaatttacag aagataacgc ttatgctcca aattcccctt attcagcttc
      301 aaaagcaagt gctgatatgc ttgttagaag ttatcatcat acttatggat taaatgctgt
      361 tatttctaat tgttctaaca attacggacc ttttcagcat gatgaaaaac ttatacctac
      421 cataataaga aatgcattaa ataacgctca aattccaata tatggagatg gtaagaatat
      481 aagagattgg ctatatgtaa aagatcattg cgtggctata gaaagtattt ataaatatgc
      541 ttttgaaaag ataaaagaaa ataatagctt ttttgatgta tttaatatag gaacaaatga
      601 agaatggcaa aatatagaca tagctaataa aatttgttct tatttagata atgtattgcc
      661 aaaaaatact tcttataaag agcaaattac ttttgtaaag gatagagcag gtcatgatag
      721 aagatatgcc atagatccga caaaattaca gagggttata ggttggaaag cacaagaaaa
      781 ttttaatagc ggtttagata aaactataca atggtatatt aaaaaataca agggttaaat
      841 ttgaactata caatattaaa attcaaaacc ataaatagta aaaattcaat attaaatgtc
      901 catcaaaaag atgtaaattg tccatttgaa attaaaagaa ttttttatat atatgatttt
      961 ttaaatgatt caataagagg tgatcatgct aatttaaatt cagaatttat ttttatagct
     1021 ttaaatggaa gttgcgaaat tttaatagac gatggacaaa caaaacaaaa aataatatta
     1081 aatgataaaa ccaaaggctt atatatagat aaaatgatat ggaaacaaat gtataatt
//
LOCUS       DAZAND010000164         1086 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.166, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000164 DAZAND010000000
VERSION     DAZAND010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.166"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            49..231
                     /locus_tag="ACHDOB_001780"
     CDS             49..231
                     /locus_tag="ACHDOB_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326684.1"
                     /translation="MKKVVLISALLGAFAANVFAANTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTPAQ"
     gene            complement(367..441)
                     /locus_tag="ACHDOB_001781"
     tRNA            complement(367..441)
                     /locus_tag="ACHDOB_001781"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(406..408),aa:Glu,seq:ttc)
     gene            589..>1086
                     /locus_tag="ACHDOB_001782"
     CDS             589..>1086
                     /locus_tag="ACHDOB_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HFN3326685.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAEL"
BASE COUNT          398 a          141 c          156 g          391 t
ORIGIN      
        1 ataattacaa ttaatttgca actaaaaatt attcataagg aggaaaatat gaaaaaagtt
       61 gtactaatct cagcattact aggtgctttc gcagctaatg tttttgcagc taatactcca
      121 agcgatgtga atcaaacaca tacaaaagct catcattcaa aagctaaagc tgataaaaaa
      181 catgaagcta aaactcacaa aaaaacaaaa gagcaaacac cagctcaata atgcccagcc
      241 ttgatataag tctataatag acttatatca aaagctattc gtattctaca aaataaatta
      301 ttaatattta ttaaatttta atagaaaaaa tgaaaaaatc gttattttaa aagaaaaatt
      361 aaaaagtggt gacccatacg agactcgaac tcgtgttacc gccgtgaaag ggcgatgtcc
      421 taaccgctag acgaatgggc cacttttaag gagtaaaaaa taaaaatgaa attgaattat
      481 atatatttat ttcttaaaat ttaattaaat atatcaaaat tatgtgattt ttatctttgt
      541 ttgattataa tttcatcttc aattttttat aaaattttag gatttattat ggatttttat
      601 agtcttattt ttttatcctg tgctttagga atggatgctt ttgctgtatc actatgcaaa
      661 ggttttagtg ttaaaaaact acatttaaaa cattatctta ttgttggaat ttattttggt
      721 ggatttcaag ccttgatgcc aactattggt tattttatag gcataacttt tgcatctttt
      781 attgcgagta ttgatcattg gatagctttt attttacttt ctttaatagg attaaaaatg
      841 atcaaagagt cattggaaaa tgaaaattgc gatagtaatg ccaatcaatt tggctttaaa
      901 accatgctag ctttagcaat tgctacgagt atcgatgcac tagcagttgg tgtgagtttt
      961 gcatttttaa atgtaaattt attattagct atatttttaa taggtattat caccttcatt
     1021 ttatgcatca ttgctctaaa aataggaaat aaatttggaa tttatcttaa aaataaagct
     1081 gaactt
//
LOCUS       DAZAND010000165         1045 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.167, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000165 DAZAND010000000
VERSION     DAZAND010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.167"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..408)
                     /locus_tag="ACHDOB_001783"
     CDS             complement(<1..408)
                     /locus_tag="ACHDOB_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326686.1"
                     /translation="MDYNVFLLNIQDKINQEDFFNLKLKFEQLQNKKEALSNLVFLRL
                     QDPIKPLIMSMICGFLSLGWLAIDRFMIKDYALGILRIILSLFPCVLFLILGISYEND
                     SNLDISEIFFGLFGIFLLLGIIWWGVDLFLVYKK"
     gene            complement(458..811)
                     /locus_tag="ACHDOB_001784"
     CDS             complement(458..811)
                     /locus_tag="ACHDOB_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002920535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326687.1"
                     /translation="MKCFNAKFMFVGILAVFLSACSSGIPKCSDQDVQNVLTEIILEH
                     NFGRFSEVDRKKLKFTYSGFMSDLTDKESKTQYCKAQVKANGSIDSRPYKWDAWIEYF
                     ARYTDDGMVYVEITR"
BASE COUNT          394 a          195 c           91 g          365 t
ORIGIN      
        1 ttttttatag actaaaaata aatctactcc ccaccaaata atgcccaata atagaaaaat
       61 tccaaacaac ccaaaaaaaa tttcagaaat atccaagtta gaatcatttt catagctaat
      121 tcctagtatc aaaaataaca cacaaggaaa taaagataat attatacgca atattcctaa
      181 tgcatagtct tttatcataa atctatcgat tgccaaccaa cctaaactta aaaaaccaca
      241 tatcatactc ataattagag gttttatagg atcttgaagt cttaaaaata ccaaatttga
      301 taaagcttct tttttatttt gtaattgttc aaacttaagc tttaaattga aaaaatcttc
      361 ttgatttatt ttatcttgta tatttaaaag aaaaacatta tagtccatat ccagtctcct
      421 caaaattaac tttttaaggc atttttgcct taaaaagtta tctggtaatt tctacatata
      481 ccataccatc atcagtatat ctagcaaaat actcgatcca agcatcccat ttgtaagggc
      541 gagaatcaat acttccattt gcttttactt gagctttaca atactgtgtt ttactttcct
      601 tatcggttaa atcgctcata aaaccgctat aagtaaattt caacttttta cgatcaacct
      661 cagaaaatct accaaaattg tgttctaaaa taatctcagt taaaacattt tgtacatctt
      721 gatcactaca ttttggaata ccgctactac aagcactcaa aaatactgcc aaaattccaa
      781 caaacataaa tttcgcatta aaacatttca ttaatttcct ccttttttgt tcacctaaat
      841 aatattttag tttctcttca tctgtaccaa gttcaccatt ttacttgtaa tctctaaaaa
      901 aacctgtgca atatttagag caacagacaa aatatttaaa agcaattttc tttattgctt
      961 aagaattcta aacctcactt gccacaaaaa caaaatttac taaaaacttg ataaaaatat
     1021 tttgcaaact tatttttgat tgttt
//
LOCUS       DAZAND010000166         1042 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.168, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000166 DAZAND010000000
VERSION     DAZAND010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.168"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..234)
                     /locus_tag="ACHDOB_001785"
     CDS             complement(<1..234)
                     /locus_tag="ACHDOB_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326688.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVVEFLKNKYKDF"
     gene            complement(218..>1042)
                     /locus_tag="ACHDOB_001786"
     CDS             complement(218..>1042)
                     /locus_tag="ACHDOB_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-to-5' oligoribonuclease B"
                     /protein_id="HFN3326689.1"
                     /translation="FEKICKEKNIKIFLLDHHQSGEECAQKYSWYLLDSKRCATKIVY
                     DFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGLIANAKEINRVMFKESQ
                     IDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKNDDTLSNLISYFVVEKLSE
                     LKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFIDVSSRKTLSFRANGKID
                     VSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLIKSKELKKENNESKQ"
BASE COUNT          355 a          180 c          106 g          401 t
ORIGIN      
        1 aaaatctttg tatttatttt ttagaaattc cacaacttct aaaatttcat caaccccttc
       61 tttgttggaa ttttcgagca cattatctat attatcaata taagcttcta ttgcattttc
      121 taatttttct cttttaactc cagcgtataa aagcatagct tctaaaacta tgctaagctc
      181 atattgtaaa tcttctagtt cattttttaa ggttttatta ttgttttgat tcattgtttt
      241 cctttttaag ttctttgctt ttaattaaat caataatttg agccttaata taattataat
      301 ttgccccatc tttaaatgtc gcaaaaagtc caccactagc atttttatgt ccaccgccac
      361 ctactaaatt tttagccatt aaacttacat ctatttttcc atttgcacga aaacttaagg
      421 tttttctaga actaacatca ataaaaaagt cataatcagg attttttact aaaaaatcat
      481 ttccaataac agaagtattg cctatatttg aagttaagat gcctttatgg ccttcatatt
      541 ctatactgaa attttctttt agctcactta gtttttcaac tacaaaataa gaaattaaat
      601 tagaaagagt atcatcattt tttctggcaa aataatcctt ttttataaaa tgagtagcat
      661 tatcgagtaa aatatttgca ttttcttttc ctataaattt ccaagcctta tcaagcaaga
      721 aaaacatata atcgatttga gattctttaa acatcacacg atttatttct tttgcattgg
      781 caatcaagcc taaaaaaacc tttccaagtt caaaattttc atcctcgctt agccaaatat
      841 caacagcatt aaccacatca acaaattttg aaagctctaa aacaggggtg cagattttag
      901 agaaaaaatc ataaacgatt ttagttgcac atcttttaga atcaagtaaa taccaagaat
      961 atttttgagc acattcttcg ccactttgat gatgatcaag aagaaaaatt ttaatatttt
     1021 tctctttgca aattttttca aa
//
LOCUS       DAZAND010000167         1042 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.169, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000167 DAZAND010000000
VERSION     DAZAND010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.169"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            58..777
                     /locus_tag="ACHDOB_001787"
                     /pseudo
     CDS             58..777
                     /locus_tag="ACHDOB_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            707..>1042
                     /locus_tag="ACHDOB_001788"
     CDS             707..>1042
                     /locus_tag="ACHDOB_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326690.1"
                     /translation="MGVENIYTLPLNGVPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDKRITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNN"
BASE COUNT          367 a          142 c          174 g          359 t
ORIGIN      
        1 gttgcaaata atcaatttgc gataaatcaa aaggatttta ttttagtgag aaatgagatg
       61 aaaaaatatt ttaatatttt taaaattttt acaaataaga caaatgcaaa atttggcttg
      121 ggcgtttgta gtgtggtttt atcttcttcg gtttgttttg cggcggttca ggctacaagc
      181 aaggatggaa aaatttttta tatttctgaa cattctttta aggataatca agtttatgat
      241 tttcaagcag aaatttttaa aaaaaattaa tggaaaaaat ttctatgctt ctaagtcaaa
      301 atatcctata ttaaatttaa ctatgattta taataaccct aaatctggaa ataaaaattt
      361 atgcaagctt gaaattttaa ctccggatac ttcaaaagaa gagatcataa cagcttttag
      421 cactttagga accgtatctt cagatactca agccgttcct agttctttta tgccttttat
      481 tgtaacagct tatgctcaaa atacaaatgc aacaaataat aaacttatat tagaaaatgg
      541 agaattatct tctgtgtatt tttgcaaacc aagcataggg gattgtggag tacctaataa
      601 ttctcaaaaa ggcgatcgtt ttaagtattt aattactgcg gcgtttactg acaggggggg
      661 ggatttaaca atcaaaccat tttaaaagaa aactcctata tcaataatgg gtgtagaaaa
      721 tatctacacc ttgcccttaa atggagttcc ttatatttca ggatctgtag cttttgatgg
      781 tgaagctaaa gacaataaat taatcttaga gtcaaataca aaaattgacc ttcataattc
      841 ccagtatttt tcagatgaag aaggtaagga tatttatgat aaaagaatta ctcgtttaat
      901 gggagctttt ggtataaatt ctaatttaca aaacaataaa gttcttatcg attcagccaa
      961 tatcgtcctt catgggccag atggtgagta tacagctcgt tcgacctttg aaattttggg
     1021 tgctttagct gatgtaaata at
//
LOCUS       DAZAND010000168         1031 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.170, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000168 DAZAND010000000
VERSION     DAZAND010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.170"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..903)
                     /locus_tag="ACHDOB_001789"
     CDS             complement(<1..903)
                     /locus_tag="ACHDOB_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFN3326691.1"
                     /translation="MAKISILTPCFNHEKYVSYFLQSVLEQSFSDFELIIVDDCSSDN
                     STKEIQKFKDPKIKLIKHEFNKGINATLNTAFENSNGEYIVFCASDDILEKNALEIIY
                     KTFKDNDIIAVYPNLICIDENNEILGNLYPLKQRNKVELLYYLFMRYNCLTSVGLSLK
                     RDVFEKLYPLPNSMCNYQDMKMHIDILNIGEIKILETQLIRYRRTRDKTNISAHNSIT
                     TTRENLETEMLLDTYLKFDNIFLLEQIFHKEVNKTNIKPYQETLPFFLGIMALESDNI
                     YKKYWGYHKIMEFYKNDANAKILYE"
BASE COUNT          341 a          136 c          107 g          447 t
ORIGIN      
        1 ttcatataaa attttagcat tggcatcatt tttataaaat tccattattt tatgataacc
       61 ccaatatttt ttatatatgt tgtcagattc taaagccatt attcctaaaa aaaaaggcaa
      121 tgtctcttga taaggtttta tatttgtttt atttacttct ttatgaaaaa tttgctctaa
      181 taaaaatata ttatcaaatt ttaagtaagt atctaagagc atttctgttt ctaggttttc
      241 tcgagttgtt gtgatgctat tatgagcact tatatttgtt ttgtctctag ttcttctgta
      301 tcttataagt tgtgtttcaa gtattttaat ttcgccaata tttaatatat caatatgcat
      361 cttcatatct tgatagttgc acattgaatt tggtaaagga tataattttt caaaaacatc
      421 tctttttaaa gataatccaa ctgatgttaa gcagttgtat cgcataaata aataatataa
      481 taattctacc ttatttcttt gttttaatgg atataagttc cctaaaattt cattattttc
      541 atctatacaa atcaaatttg gatatacagc tataatatca ttatctttaa atgttttata
      601 gataatttct aaagcatttt tttctaatat atcatcactt gcgcaaaata ctatgtattc
      661 tccatttgag ttttcaaaag ctgtatttaa tgtcgcattt atacctttgt taaattcatg
      721 ttttataagt tttatttttg gatctttaaa tttttgaatt tcttttgtgc tattatcact
      781 tgaacaatca tctactataa tgagctcaaa atcactaaaa ctttgctcta aaacactttg
      841 taaaaaataa ctcacatatt tttcatgatt aaaacatggg gttagaatgg aaatttttgc
      901 cattacttta tccttgtaat attataactt atttaatttt tgagcgataa ttttaaatcc
      961 atcaatacct gaaattataa aatagttttc aaattcttga aagacattat atcctataaa
     1021 ttcgtttact a
//
LOCUS       DAZAND010000169          970 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.171, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000169 DAZAND010000000
VERSION     DAZAND010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.171"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>970
                     /locus_tag="ACHDOB_001790"
     CDS             <1..>970
                     /locus_tag="ACHDOB_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326692.1"
                     /translation="CYFMDCEFGYRQDKDNQAKLNFSNTHFEDNVYFNNSEFYNYADF
                     HECEFDDIACFYGVKFYKTPNFSACYFKEPKAVNLINVDIDKLDFKSVEKYIEDNYKD
                     ESYKNETKGIQDKKEFFKIKNKHKLRYAKNLKDSFRVIKDVLITQNNTLEAQEWHKLE
                     LYAKEKENHINLSVKDREKNADIFKNILIWFNCVLLNVYRNTSDHHNDFLKILNFTVG
                     MIVLYGVFIFFCQACIEPYSKFFNELKSSVIFIIIGILVFLCCIMFYFNRKKSIFAKS
                     IFFIIAMVFIVLYLVTYFYKTNEYKTILYLVMCYILSIYICYFFFNI"
BASE COUNT          370 a           84 c          142 g          374 t
ORIGIN      
        1 tgttatttta tggattgtga atttggatat aggcaagata aagataatca agcaaaatta
       61 aatttttcaa atactcattt tgaagataat gtttatttta ataattctga attttataat
      121 tatgctgatt ttcacgagtg tgaatttgat gatatagctt gtttttatgg agtgaagttt
      181 tataaaactc cgaattttag cgcttgttat tttaaagaac caaaagctgt aaatttaatc
      241 aatgtcgata tagataagct agattttaaa tcagtggaga aatatataga agataattat
      301 aaagatgaaa gttacaaaaa cgaaaccaaa ggaatacaag ataaaaaaga gttttttaaa
      361 attaaaaata aacataaatt aagatatgcc aaaaatttaa aagattcttt cagggttata
      421 aaagatgttt taatcactca aaataatacc ctagaagctc aagaatggca caagctagag
      481 ctttatgcga aagagaaaga aaatcatata aatttaagcg tcaaagacag agaaaaaaat
      541 gctgatatat ttaagaatat attaatatgg tttaattgtg ttttgttaaa tgtgtataga
      601 aatactagcg atcatcataa tgatttttta aaaattttaa attttactgt ggggatgatt
      661 gttttatatg gggtgtttat tttcttttgt caagcttgta tagaacctta tagtaaattt
      721 tttaacgaat tgaaatcgag cgttatcttt attatcatcg gtatattagt ttttctttgc
      781 tgcatcatgt tttattttaa tagaaaaaaa agcatttttg caaaatcaat attttttatt
      841 attgctatgg tgtttatagt cttatatctc gtaacttatt tttataaaac taatgaatat
      901 aagacaattt tatatttagt aatgtgttat atattaagca tatatatatg ttatttcttt
      961 tttaacatta
//
LOCUS       DAZAND010000170          895 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.172, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000170 DAZAND010000000
VERSION     DAZAND010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.172"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            38..895
                     /locus_tag="ACHDOB_001791"
                     /pseudo
     CDS             38..895
                     /locus_tag="ACHDOB_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
BASE COUNT          321 a          109 c          169 g          296 t
ORIGIN      
        1 tccctataaa ataatattag aaaggagcgc ttaaattatg aaaagcgtaa aattgaaggt
       61 tgcactgatt gcaaatttaa tcgcagtagt gtgtttggta attttaggtg ttataacatt
      121 tatgtttgta aagcaagcaa tttttcatga agttgtaaaa gctgaaacaa actatgttaa
      181 aacagctaaa aattctatgg agtcttttaa ggcaagaaat tctttagctc ttgaaagttt
      241 ggctaaaagt attttaaagc atcctgtaaa cagcttagat agtcaagatg ctttaatgcg
      301 ttatgttgga aaagatttaa agaattttag agatgctgga agatttttag cagtttatat
      361 cgctcaacca aacggagaac ttgttgtaag tgatccagat tctgatgcta aaaagtagat
      421 tttggaactt atggaaaagc tgataattat gatgctagaa caagagagta ttatatagaa
      481 gcagtaaaaa caaataaact ttatgttacc ccatcttata tagatgcaac tacaaattta
      541 ccttgtttta catattctac ccctcttttt aaagatggta aatttatagg ggttttggct
      601 gtggatgttc ttgtaacaga tttgcaagca gaatttgaga atttaccagg tagaactttt
      661 gtatttgatg aagaaaataa agtatttgct tctacagaca aaactctttt gcaacaaggt
      721 tatgatatta gtgcaattgc aaatcttgca aaaattaaag aaaattttga accttttgaa
      781 tatactagac caaaagatgg tagtgaaaga tttgctgtgt gtacaaaagt ttctggggct
      841 tatactgctt gtgttggaga gccaatagaa caaatagaag ctccagttta taaaa
//
LOCUS       DAZAND010000171          893 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.173, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000171 DAZAND010000000
VERSION     DAZAND010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.173"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..691)
                     /locus_tag="ACHDOB_001792"
     CDS             complement(<1..691)
                     /locus_tag="ACHDOB_001792"
                     /inference="COORDINATES: protein motif:HMM:NF013882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HFN3326693.1"
                     /translation="MKFFIINLKIAKDRKEYMQNLCLKHNLDYEIIQAVDGKELDSDF
                     VKNISDFSLSEKYLGRTLSLGEIGCALSHKKCFERMFELNLNECLILEDDAYFDEKLN
                     YILSLKDKFPKDLELFLLGHYRQVYLDDGFRIESPFSLRYDYKIDDFYHAKRLVGGGN
                     GTHGYYINKNGALKMYKYLEKIIFPYDHCTSNDNIINVYALYPVVITTDEIFGAQTYV
                     QDDNKRRYRKRS"
BASE COUNT          347 a          136 c           73 g          337 t
ORIGIN      
        1 tacttctttt tctatatctt cttttattat catcttgcac ataagtttgg gctccaaata
       61 tctcatcagt agttataaca acaggatata aagcatatac atttattata ttatcattac
      121 tagtacaatg atcatatgga aatattattt tttctaagta tttatacatt tttaaggcac
      181 catttttatt gatataatat ccatgggttc cattgccacc accaactaat ctttttgcat
      241 gataaaaatc atctatttta taatcatatc ttaaagaaaa tgggctttct atacgaaatc
      301 catcatctaa ataaacttgc ctataatgac caagtaagaa taattctaaa tcttttggaa
      361 atttatcttt taaacttaaa atataattta atttttcatc aaaataagca tcatcttcca
      421 atatcaaaca ctcatttaaa tttagctcaa acattctttc aaaacatttt ttatgggata
      481 aagcacaccc tatctcacca agacttaaag ttctacctaa atatttttcc gataaagaaa
      541 aatcactaat attttttaca aaatcactat ccaactcttt tccatcaaca gcttgtatga
      601 tttcataatc taagttatgc tttaaacata aattctgcat atattctttt ctatctttgg
      661 ctatttttaa attgattata aaaaatttca taaataaaaa cctatcataa taatttataa
      721 gataaaatta tactataata taaataaaaa aggttatgac aatgatatat tatccgtatt
      781 atttaaaaaa atatttagcg aagattgcat gcttgtttat accaaataaa aatataaggg
      841 caataattag agaaaaatta ctcaatcaat ttatgcaaat aaaacttgat aat
//
LOCUS       DAZAND010000172          821 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.174, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000172 DAZAND010000000
VERSION     DAZAND010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.174"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(121..>821)
                     /locus_tag="ACHDOB_001793"
     CDS             complement(121..>821)
                     /locus_tag="ACHDOB_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFN3326694.1"
                     /translation="DTEKFKFYLKNRDKKVTYQDLMEILYKNGIESSEATIKKWLMSK
                     EDNKTKPKPQYIKILCNALDIPFNEVILQDVFRNDNQINFRYFPDIYASAGLGTSSQS
                     EEVKIVSVDENFLKEILDIPIKKSYDIIKINGDSMEPILSNGDFIIIDRSKNSLETIS
                     NADIVIFRKNDDLFCKKIKKEPFEDYIFLVSENKKYEDKKVYNSEFEQCEILGAVVSK
                     MAVETFKNFIEVVG"
BASE COUNT          280 a          120 c           74 g          347 t
ORIGIN      
        1 gatatcctat aattactata atcaaattat taattttaac acttaaaata agaacaaaaa
       61 ttcctataat atatgacaat ataaaaggat tttttaaata ggttgttatt ttatttaagc
      121 tcatcccacc acttctataa aatttttaaa ggtttcaaca gccatttttg atactacagc
      181 gcctaagatc tcgcattgct caaattcgct attatatact tttttatctt cgtatttttt
      241 attttcagaa actaaaaaaa tataatcttc aaaaggttct tttttaattt ttttacaaaa
      301 taaatcatca ttttttctaa aaataacaat atctgcgttt gaaatagtct caagtgaatt
      361 tttacttcta tctataataa taaaatctcc attagataaa attggttcca tgctatcgcc
      421 attaattttt ataatatcat aactcttctt tataggtata tctaaaattt cttttagaaa
      481 attttcatca acggaaacta ttttaacttc ttcactttga gatgaggttc caagtcctgc
      541 acttgcataa atatctggga aatatctgaa gttaatttga ttatcatttc taaaaacatc
      601 ttgcaatatc acttcgttga aaggaatatc caatgcatta cataaaattt ttatatattg
      661 tggtttaggt tttgttttat tatcttcttt agacatcaac cattttttta ttgttgcttc
      721 tgagctttct atgccatttt tatataaaat ttccatcaaa tcttgatatg taactttttt
      781 atctctattt tttaaataaa atttaaattt ttcagtatca a
//
LOCUS       DAZAND010000173          797 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.175, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000173 DAZAND010000000
VERSION     DAZAND010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.175"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            3..>797
                     /locus_tag="ACHDOB_001794"
     CDS             3..>797
                     /locus_tag="ACHDOB_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFN3326695.1"
                     /translation="MKDMEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFDGI
                     LFERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISEHF
                     LAPILFDFKAEFKNIEIHSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLEIN
                     FWQDDELIVATSDKKLNEKEFYIDELLEQKWILREAGSGLRDKFLNEIGASSKKLNIF
                     LELDRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLK"
BASE COUNT          342 a          104 c          112 g          239 t
ORIGIN      
        1 aaatcaaaga tatggaaata tttttagatc ttttaaacac tcaaagtcca actcatacag
       61 ccaacaattt ttccataact caacctaatg tttcaatagt aattaaaaat ttagaaaata
      121 aatttgatgg tattttattt gaaagacttg gaaaaaaact cttacctaca ccaaaagctt
      181 tagaactagg aaaaaattgg ttaaaaatta tacaagctta ctatcaaagc ttagaaaaat
      241 taaacgacga aagtatgctc ttaggggaaa taaaaatagc ctcaactcaa agcatttctg
      301 aacatttttt agctcctatt ttatttgatt ttaaggcaga atttaaaaac atagaaattc
      361 actctcaaac gcagaattca aaagaatgtt taaatttact aaaaaacgga aatatagaat
      421 ttgcaatcat tgaagcagaa cttgatccgg ctttagtgga gtatgaaaat ttagaaataa
      481 atttttggca agatgatgaa cttatagtag ctacaagtga taaaaaactc aatgaaaaag
      541 aattttatat cgatgaactt ttggaacaaa agtggatttt aagagaagca ggctcaggct
      601 taagggataa atttttaaac gaaattggtg caagctcaaa aaaacttaat atttttcttg
      661 agcttgatag aatggctgcg attaaagaac ttgttttaca aaaaaaagca atctctattt
      721 tttccaaaaa aagcatagaa aaagaattaa aaaattcaac actttatgaa attaaattaa
      781 aaaatatcga cctaaag
//
LOCUS       DAZAND010000174          686 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.176, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000174 DAZAND010000000
VERSION     DAZAND010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.176"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            1..686
                     /locus_tag="ACHDOB_001795"
                     /pseudo
     CDS             1..686
                     /locus_tag="ACHDOB_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002891861.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          293 a           69 c          103 g          221 t
ORIGIN      
        1 aaaatatgat aatgaacatt tttataaaat aaatcacatt ataaaatcta aacacaaagg
       61 attttttgat tttgacgaaa aatctaaaaa tccaacatca cctttaaatc catgggctta
      121 tataagagta aaaaatgaag cattaacttt gaaagcttcg ttaaaaagta tacttccggc
      181 tatacaaaga gggattatag gatataatga ttgcaatgat ggaagcgaag agataatctt
      241 agaattttgc aaacagtatc cttcttttat accagtaaaa tatccttatg aagtacaaat
      301 tgaaaatcca caaagtgaag aaaataaact ttatagttat tataattatg ttgcaagctt
      361 tattccacaa ggagaatggc ttataaaaat agatgttgat catatgtatg atgctaaaag
      421 attatacaaa agtttttata tacctaaaaa aaagactatg atatactttg ttattctcga
      481 atagattttt attataaaga tgatgataga gctgaggtat ttatagtaaa gtataagagt
      541 atcaataata tcttgaataa caagagtaat gatcaatggt tgataaaaaa taatcatctt
      601 aaatgggcag aaagtatgca tgaagatagg tattgtatag agtatttgga tataaaaaag
      661 ttaaaaattt atcaaacaga attttt
//
LOCUS       DAZAND010000175          685 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.177, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000175 DAZAND010000000
VERSION     DAZAND010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.177"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>685
                     /gene="wlaTC"
                     /locus_tag="ACHDOB_001796"
     CDS             <1..>685
                     /gene="wlaTC"
                     /locus_tag="ACHDOB_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class E lipooligosaccharide biosynthesis protein
                     WlaTC"
                     /protein_id="HFN3326696.1"
                     /translation="NDKYLSYFEFLAGIKNKMIIYTQENIKEKILDTRKKHNLEDKTI
                     IITKELQEFDEQGYKKIIDTFRNYDQSINRKNPNNIECISPMYCYLMYLKPFFVCDAI
                     QRGLTDEDIMWLDFGFNHGGNFFVDKDQFNFYLQKQNSIDENKINLFSIKNDNKQTLA
                     NIYFSMETFLMGGIIFAKSKNWLLFKHHMQKCIKYFTSFGIIDDDQIMLLWCARNYRK
                     NYNIIKVYF"
BASE COUNT          296 a           68 c           86 g          235 t
ORIGIN      
        1 ataatgataa atatttatct tattttgaat ttttagcagg tatcaaaaat aaaatgatta
       61 tatacaccca agaaaatata aaggaaaaaa ttttagatac aagaaaaaaa cataatttag
      121 aagacaaaac cataataata accaaagaat tacaagaatt tgatgagcaa ggttataaaa
      181 aaataataga tacttttaga aattatgatc aaagtataaa tagaaaaaat ccaaacaata
      241 tagaatgtat ttctcctatg tattgctacc ttatgtattt aaaacctttt tttgtatgtg
      301 atgctataca aagaggtttg actgatgagg atataatgtg gcttgatttt ggttttaatc
      361 atggaggaaa ttttttcgta gataaagatc aatttaactt ttatctacaa aaacaaaata
      421 gtatagatga aaataaaatt aatctctttt caataaaaaa tgataataaa caaactttag
      481 caaacattta cttttccatg gaaacatttt taatgggtgg tattatattc gcaaaatcaa
      541 aaaattggct cttatttaaa catcatatgc aaaaatgtat aaaatatttt acctcatttg
      601 gaataattga tgacgatcaa ataatgcttt tatggtgtgc tagaaattat cgaaaaaatt
      661 ataacattat aaaagtttat ttttg
//
LOCUS       DAZAND010000176          662 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.178, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000176 DAZAND010000000
VERSION     DAZAND010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.178"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..275)
                     /locus_tag="ACHDOB_001797"
     CDS             complement(<1..275)
                     /locus_tag="ACHDOB_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HFN3326697.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDT"
     gene            complement(420..>662)
                     /locus_tag="ACHDOB_001798"
     CDS             complement(420..>662)
                     /locus_tag="ACHDOB_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HFN3326698.1"
                     /translation="ITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDF
                     AAESANYSKANILAQSGSYAMAQANSVQQNVLRLLQ"
BASE COUNT          201 a          121 c          115 g          225 t
ORIGIN      
        1 atggtatcta agattttaag ttgctcatcc atagccttat cagcagtttg taagatacct
       61 atagcatcat taccattgtt gatagcttga cctaaagtcg ctgcttgtga acgcaaagaa
      121 tctgctatcg ccatccctga agcatcatct gctgcggagt tgattctaag acctgaacta
      181 agtctgctta aagacttatc cagttctcta gcattaacaa ctgaatttgc atgtgcattt
      241 aatgcaccga tgttggtgtt tatcctaaaa cccattttaa atcctttcaa aatattgcat
      301 cgaaaagatt aaagcaaaaa gtgttccaag ttttagttta attaaaaatt ctagagctta
      361 aaataaaaaa gcctagtatt aaactaggct tggatttgta tatattacag ctttttaaac
      421 tactgtagca atcttaaaac attttgttga acagaattag cttgcgccat agcataagag
      481 ccactttgag ctaagatatt tgctttagag tagtttgcac tctcagccgc aaagtctaca
      541 tcacggattt gtgactcagc tgctttaacg tttacttgag taacagtgat gttgtttatc
      601 gttgatgtaa cttgattttg caccgaacca atgtcggctc tgatttgatc aagatttgtt
      661 at
//
LOCUS       DAZAND010000177          644 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.179, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000177 DAZAND010000000
VERSION     DAZAND010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.179"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..430
                     /locus_tag="ACHDOB_001799"
     CDS             <1..430
                     /locus_tag="ACHDOB_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326699.1"
                     /translation="LLFKDFIEYKQNKEIQNKNFIIQEEISKLKQDKQKLLTNIQDLN
                     FTLSNKISSTQQQFHILSTITKEINLDKNKAIILNQIISWLNSNELKITNLEFKQTKI
                     ILSFIDENHFKKALENLNLTFKILDKNEETFNIILEVIHE"
     gene            423..>644
                     /locus_tag="ACHDOB_001800"
     CDS             423..>644
                     /locus_tag="ACHDOB_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326700.1"
                     /translation="MNKIEVFLQNLNPREKFLFISFICLCALFLAFKIHDHFLENIFQ
                     KTLVEHNYLALNEAKIENSHLKEIGIKLTK"
BASE COUNT          295 a           87 c           50 g          212 t
ORIGIN      
        1 tttattattt aaagatttta tagaatacaa acaaaataag gaaattcaaa ataaaaattt
       61 tatcatacaa gaagaaattt ctaaactaaa acaagataag caaaaattat taacaaacat
      121 acaagattta aactttactc tttctaataa aatatcatct acacaacaac aatttcatat
      181 tttatccacc ataacaaaag aaatcaattt agacaaaaat aaagcaatca ttctaaatca
      241 aatcatatca tggcttaatt ccaatgaact taaaattaca aatcttgaat ttaaacaaac
      301 aaaaatcatt ctttctttta tcgatgaaaa ccactttaaa aaagcattag aaaatctaaa
      361 tttaactttt aaaattcttg ataaaaatga agaaacattt aatatcatat tagaagtcat
      421 acatgaataa aatagaagta tttttgcaaa atctcaatcc tagggaaaaa tttcttttta
      481 tttcttttat ctgcctttgt gctttgtttt tagcttttaa aattcacgat cactttttgg
      541 aaaatatttt tcaaaaaaca ttagtagaac ataattacct tgcattaaat gaagcaaaaa
      601 tagaaaattc acatcttaaa gaaataggga taaaactaac aaaa
//
LOCUS       DAZAND010000178          637 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.180, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000178 DAZAND010000000
VERSION     DAZAND010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.180"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            28..438
                     /gene="perR"
                     /locus_tag="ACHDOB_001801"
     CDS             28..438
                     /gene="perR"
                     /locus_tag="ACHDOB_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HFN3326701.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCAKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDSCKKCH"
     gene            484..>637
                     /locus_tag="ACHDOB_001802"
     CDS             484..>637
                     /locus_tag="ACHDOB_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326702.1"
                     /translation="MVYEIQKNFLLSDCTLLENLKKDNIPFRNSKFETFYTQITSNHS
                     VKFQSFC"
BASE COUNT          255 a           75 c           90 g          217 t
ORIGIN      
        1 tacttaaaaa agcaaggaat aaataaaatg gaattactac aaatgcttaa aaaacatgag
       61 ttaaaagcta ctccgcaaag actatgtgtt ttaaaaattt taaaaagaca tgagcatcct
      121 aatattgatg aattatatac agaaattaaa aaagaatacc cttcaatctc tttagcgacg
      181 gtttataaaa atcttaatac tttacaagaa caaggtttag ttgttgaaat caatgtttta
      241 aatcaaaaaa cttgttacga tatttatgaa gaagaacata ttcatgttgt ttgcgccaaa
      301 tgtggtggta tagaggattt aagttttaaa gatgctaagc tttatgaata tcaagagcat
      361 ttagaaaaaa agataggcaa tctcgtcaat catctgtctg tttgtgctta tgttgatagt
      421 tgcaaaaagt gtcattaagc aaaataaggt taaaataacc catatatttt aagggttatt
      481 ttaatggttt atgaaattca aaaaaacttt ttactatctg attgcactct tttagagaat
      541 ttaaaaaaag ataatatacc ttttcgaaat tctaaatttg aaacttttta tactcaaata
      601 acttcaaatc atagtgttaa atttcaaagt ttttgca
//
LOCUS       DAZAND010000179          611 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.181, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000179 DAZAND010000000
VERSION     DAZAND010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.181"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..>611)
                     /locus_tag="ACHDOB_001803"
     CDS             complement(<1..>611)
                     /locus_tag="ACHDOB_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HFN3326703.1"
                     /translation="KDTTGVEASIDANGQLLLSSREGRGIKIEGNIGGGAFINADMKE
                     NYGRLSLVKNDGKDILISGSNLSSAGFGATQFISQASVSLRESKGQIDANIADAMGFG
                     SANKGFTLGGYSSVSAYMSSAGSGFSSGSGYSVGSGKNYSTGFANAIAISAASQLSAV
                     YNVSAGSGFSSGSNLSQFATMKTTAFGVKDETAGVTTLKGAMAV"
BASE COUNT          200 a          139 c           96 g          176 t
ORIGIN      
        1 actgccatag cacctttaag tgtggtaaca cctgctgttt catcttttac tccaaaagca
       61 gttgttttca tagttgcaaa ctgagaaaga tttgatcctg atgaaaaacc tgagcctgca
      121 gaaacattat ataccgcaga aagttgcgaa gcagctgaaa tagctatagc gtttgcaaaa
      181 cctgtggaat aatttttacc gctacccaca gaataaccag aacctgaaga aaatccactt
      241 cctgcactac tcatataagc actaacagaa gaataaccac ctaacgtaaa tcctttgttt
      301 gcagaaccaa atcccatagc atcagcgata ttagcatcaa tttgtccttt tgattctctt
      361 aaagaaacag aagcctgaga gataaattga gttgcaccaa agcctgcaga agaaagattg
      421 ctaccgctga ttaaaatatc tttaccatca tttttaacta aagacaagcg gccatagttt
      481 tctttcatat cagcattgat aaaggcacct ccacctatat taccttcgat tttaatccct
      541 cttccttctc ttgagctaag caaaagttgt ccattagcat cgattgaagc ttcaactcca
      601 gtggtatctt t
//
LOCUS       DAZAND010000180          600 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.182, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000180 DAZAND010000000
VERSION     DAZAND010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.182"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            89..>600
                     /locus_tag="ACHDOB_001804"
     CDS             89..>600
                     /locus_tag="ACHDOB_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HFN3326704.1"
                     /translation="MKKIILFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAADTLDVNVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FPKLQVVNMQKNIALIQTHDTHEHSHEHEEHEHFDPHTWLDPILVQTMALNIYDALIQ
                     KYPQNKNLYK"
BASE COUNT          242 a           86 c           71 g          201 t
ORIGIN      
        1 ttatttaaag taatattgct tcaaaaattc tatgtattaa gcttaatatc gttataattt
       61 ggaaaaaatt tatatcgaag gaaatatttt gaaaaaaatt atattattta tcttatcttt
      121 agggatattt tatactttca cacaagctaa aaatttagag caagaacaaa atactagtag
      181 caatttagtt agtgtcagca tagcacctca agcatttttt gttaaaaaaa tagctgcaga
      241 tactctagat gtcaatgtta tcttacctcc aaatagcaat gagcataatt ttgaatttaa
      301 accaagcact atgaaaaaac ttgaaaaaag tgatatttat ttcaccatag gcttagaatt
      361 tgaaaaagtt tttacggata aatttaaaca aaattttcca aaacttcaag ttgtaaatat
      421 gcaaaaaaac atagctttga ttcaaactca tgatacacac gaacactctc atgaacatga
      481 ggaacatgag cattttgatc ctcatacttg gctagatcct attttagtcc aaactatggc
      541 tttaaatatt tatgacgcct taattcaaaa atatccacaa aataaaaatt tatataaaca
//
LOCUS       DAZAND010000181          591 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.183, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000181 DAZAND010000000
VERSION     DAZAND010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.183"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>591
                     /locus_tag="ACHDOB_001805"
     CDS             <1..>591
                     /locus_tag="ACHDOB_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFN3326705.1"
                     /translation="GNFKLNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIKEDI
                     EERIKESLMCLNLNESLLNKYPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFLDKN
                     TTLLFKKAILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENANVFELEN
                     QGVKFCNFIDFSNCKKYKDFKKPPSKIAIDPYKISF"
BASE COUNT          227 a           63 c           84 g          217 t
ORIGIN      
        1 tggaaatttt aaacttaata ataaacaaaa gcgtgaaatt tatttgcttt ttccagagcc
       61 tattttgtta aatcgtagcg taagggcaaa ttttttattt accttaaaaa cttatgggat
      121 taaagaagat attgaagagc gcataaaaga aagtttgatg tgtttaaatt taaatgaaag
      181 tcttttaaat aaatatccta atgaactttc atcaggacaa agtcaaaaaa tagcttttgc
      241 tatagcttta agcgtaagag cgaagtatta tttacttgat gaaccgagtg cttttttgga
      301 taaaaatact acacttttat ttaaaaaagc tattcttaaa atgcacgaaa atttcaatac
      361 aggtttttta atcgcaagtc atgataaaca ttttttagat tctttggctc aaaaaaaact
      421 ttatttacac agtggagaaa ttttagaatt tgaaaatgct aatgtttttg aactagaaaa
      481 tcaaggtgtg aaattttgta attttataga ttttagtaat tgtaaaaaat ataaagattt
      541 taaaaaacct ccaagtaaaa ttgctattga tccttataaa atttcttttt t
//
LOCUS       DAZAND010000182          566 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.184, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000182 DAZAND010000000
VERSION     DAZAND010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.184"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..302
                     /locus_tag="ACHDOB_001806"
     CDS             <1..302
                     /locus_tag="ACHDOB_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5416 family protein"
                     /protein_id="HFN3326706.1"
                     /translation="NLSQEDQEISFVKIEILNYDSNEDSLSFNLDIFPSGMSYKYGIL
                     KGSMHIILQGKTSSTMLFPFLKSMIYKNKSENSSEKIFTLMINQKKHYKLIANLS"
     gene            complement(305..511)
                     /locus_tag="ACHDOB_001807"
     CDS             complement(305..511)
                     /locus_tag="ACHDOB_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326707.1"
                     /translation="MEFLAFIFLIIIFLFVVFIIVTRYEKKIKLLNQNIQNMKEDIAD
                     LKETTQKNRSLIEKNRSNIENIIK"
BASE COUNT          215 a           57 c           68 g          226 t
ORIGIN      
        1 aaaatttatc tcaagaagat caagaaatta gctttgttaa aattgaaatt ttaaattatg
       61 atagtaatga agatagttta agttttaatc ttgatatatt tccaagcggt atgagctata
      121 agtacggaat tttaaaaggc tctatgcata ttattttaca aggtaaaact tctagtacga
      181 tgctttttcc gtttttaaaa agtatgattt ataaaaataa aagcgaaaat tcaagtgaaa
      241 aaatttttac tttaatgata aatcagaaaa aacactataa gcttatcgca aatctttctt
      301 agttttattt tattatattt tctatattag agcgattttt ttcaattaaa gagcgatttt
      361 tttgagttgt ttctttaaga tcggctatat cttctttcat attttgtatg ttttggttga
      421 gtaattttat ctttttttca tagcgagtaa cgatgataaa gactacaaat aaaaatataa
      481 taatcaaaaa aataaatgct aaaaattcca tatttttcct ttttaaaact agattttgaa
      541 atatatcatt taaatacttc aaaaaa
//
LOCUS       DAZAND010000183          528 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.186, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000183 DAZAND010000000
VERSION     DAZAND010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.186"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..>528)
                     /locus_tag="ACHDOB_001808"
     CDS             complement(<1..>528)
                     /locus_tag="ACHDOB_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HFN3326708.1"
                     /translation="NENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKAL
                     LQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMVLENDKLQAQDYTELCSSKP
                     FFQFSRIYFLELMSHYYERFHEDILGLNKKLAETFKNIILRNGNDPLDALQGIEQFVY
                     NLPQMITHPSYKELL"
BASE COUNT          206 a           66 c           61 g          195 t
ORIGIN      
        1 aaagtaattc tttataacta ggatgggtaa tcatttgagg aagattataa acaaattgtt
       61 ctatgccttg aagagcatca agaggatcat tgccatttct taaaatgata tttttaaaag
      121 tttctgctaa ttttttattc aatcctaaaa tatcttcatg aaatctttca taataatgac
      181 tcatcagttc taaaaaataa attctagaaa attgaaagaa aggtttagaa gaacaaagtt
      241 cagtataatc ttgagcttgt aatttatcat tttccaaaac catcaatctt gcactttgta
      301 attcacttga aaaatctaag atatgaaaca ttatccaaat gatttctata tctttttcaa
      361 aaacaacaat atgttgatga tttttatttt gcaataaagc tttaaataaa attccatttc
      421 caaaaccata aaaatataat acaggataaa gtagatattt atcattataa gtatttagca
      481 tagtttgcaa ttctttaatg ggatcttgat aaagtaaatt ttcattat
//
LOCUS       DAZAND010000184          488 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.187, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000184 DAZAND010000000
VERSION     DAZAND010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.187"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>488
                     /locus_tag="ACHDOB_001809"
     CDS             <1..>488
                     /locus_tag="ACHDOB_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-hydroxymethylpterin diphosphokinase MptE-like
                     protein"
                     /protein_id="HFN3326709.1"
                     /translation="LSLERIPLTSEFFNNDFGEFDKDILFVLKSYVHPHTTKYLQKNN
                     RNFMLVSTYASFINYLKLDDFGYFNMGFSVANMNFLLAIHLKHKNIVLIGQDLAYTKD
                     GLSHTKDYSNLDKHEGHFQRDKNKYTTQAYGGNGKVQSSEIWTLFRHNFEKDIVNIKM
                     NY"
BASE COUNT          185 a           58 c           68 g          177 t
ORIGIN      
        1 ctttctttgg aaaggattcc tttaacttct gaatttttta acaatgattt tggggaattt
       61 gataaggata ttttgtttgt tctaaaatcc tatgtccacc ctcatactac aaaatatctt
      121 caaaaaaata atagaaattt tatgcttgta tctacatatg caagttttat aaattattta
      181 aaacttgatg attttgggta ttttaatatg ggatttagtg tagctaatat gaatttttta
      241 cttgctatac atttaaagca taaaaatatc gttttaatag gacaagattt agcttatact
      301 aaagatggac tttctcacac taaagattat agcaatcttg ataaacatga aggacatttt
      361 caaagagata aaaacaaata taccactcaa gcttatggag gaaatggaaa agttcaaagt
      421 tctgaaattt ggacactttt tagacataac tttgaaaaag atatagtcaa tataaaaatg
      481 aattatca
//
LOCUS       DAZAND010000185          473 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.188, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000185 DAZAND010000000
VERSION     DAZAND010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.188"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..>473)
                     /locus_tag="ACHDOB_001810"
     CDS             complement(<1..>473)
                     /locus_tag="ACHDOB_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-hydroxymethylpterin diphosphokinase MptE-like
                     protein"
                     /protein_id="HFN3326710.1"
                     /translation="CMLERTEITAEFFNHDFGEFDKDIIFVCAGVVHPKAIEYLKGRN
                     LVITQKVLAFPYYINLKDFSYAAVGLSVAHTLSYLATYLNHKNIIFIGQDLAYAENGN
                     SHPDDYQNSATYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENEMIPNTRKM"
BASE COUNT          166 a           83 c           59 g          165 t
ORIGIN      
        1 tccatttttc tagtatttgg aatcatttca ttttcaaacc aatttttaaa taaaagccat
       61 atactatgag tttcaacttt tccatttcct ccataagctg tagttaaaat atgttcatac
      121 atttgacttt cataggtggc tgagttttga taatcatcag gatgagaatt gccattttca
      181 gcataagcta aatcctgtcc tataaaaatg atgtttttat gatttagata agttgctaga
      241 taagataatg tatgtgcaac actaagtcct acagcagcat aagaaaaatc tttaagattt
      301 atataatatg gaaaagcaag aactttttga gttatgacta aatttctacc ctttaaatac
      361 tcaatcgcct ttggatgaac aacccctgcg caaacaaata taatatcctt atcaaattcc
      421 ccaaaatcat gattaaaaaa ctcagcagta atttctgttc tttccaacat aca
//
LOCUS       DAZAND010000186          465 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.189, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000186 DAZAND010000000
VERSION     DAZAND010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.189"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            8..84
                     /locus_tag="ACHDOB_001811"
     tRNA            8..84
                     /locus_tag="ACHDOB_001811"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:42..44,aa:Asp,seq:gtc)
     gene            151..>465
                     /locus_tag="ACHDOB_001812"
     CDS             151..>465
                     /locus_tag="ACHDOB_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326711.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDKLEN
                     FKK"
BASE COUNT          157 a           47 c           91 g          170 t
ORIGIN      
        1 tttggatgca gcggtagttc agctggttag aatgccgccc tgtcacggcg gaggtcgcgg
       61 gttcgagccc cgtccgctgc gccatcttgc ttggtaacaa ttttataagt ataatttgca
      121 aaataataaa aaatagaact aaggaaaaaa atgcttatta ttggacataa attattaaaa
      181 aatttagatt tttcttttat tgaaagtgtt gaagaagtta aagataataa agtttattgt
      241 attgtttatg atgaaaaatt gatttcttat ttaagtcaaa atgattttga atttgctatt
      301 ttagttcaaa ataaagacga gatattttta gccaatgctt taggggctaa gtttttgctt
      361 tgtaatgata aaaaacttgc aaaatttgct agtaaggttg cagaatttta tgtttttgat
      421 agtagggttt taatgattgt tgataaatta gagaatttta aaaaa
//
LOCUS       DAZAND010000187          443 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.190, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000187 DAZAND010000000
VERSION     DAZAND010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.190"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            57..>443
                     /locus_tag="ACHDOB_001813"
     CDS             57..>443
                     /locus_tag="ACHDOB_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HFN3326712.1"
                     /translation="MTYNEKIISMNNDLLDHQHKELFEISKKLSLMNQRHVGTKELKI
                     VLRELLIMINRHFSDEEAFMREIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEE"
BASE COUNT          193 a           56 c           57 g          137 t
ORIGIN      
        1 tattatagca ttataatccg ctctcgaaaa atataaatat aaaagtactc aaaaccatga
       61 cttataatga aaaaattatt tcgatgaata atgatctttt agatcatcaa cataaagaac
      121 tttttgaaat ttctaaaaaa ctctctttaa tgaaccaacg tcatgttgga acaaaagagt
      181 taaaaattgt cttaagagag ttgttgataa tgatcaatag acatttttca gatgaagaag
      241 cctttatgag agaaatagaa tatccttata tcaaccatca tacaagaatt catagaaaaa
      301 ttatcttaga aattgaagaa attatcatca gtgaagctaa atttgtaaat ataatgaccg
      361 aaaaattaaa tctcgttgtt caagatttta tctttaaaca tacagccaaa gaagattcaa
      421 agatagtaaa gtattacgaa gaa
//
LOCUS       DAZAND010000188          419 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.191, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000188 DAZAND010000000
VERSION     DAZAND010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.191"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            134..>419
                     /locus_tag="ACHDOB_001814"
     CDS             134..>419
                     /locus_tag="ACHDOB_001814"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326713.1"
                     /translation="MKYVLASDMLKNIELLGNFYNFDQINLISLLSDRQAVQQAEIDL
                     KRMNICSNYMLDKKKYNLLFLMRYSLAARFFNRLDYRLGKCLLDAKEIRKI"
BASE COUNT          159 a           36 c           64 g          160 t
ORIGIN      
        1 tttaaatatt gaatttaatt cgatcgcaaa tttactttta cagaaatcct atgatttgaa
       61 acgatatgac aattttttgc tattttcggc ttattcaaaa tgtaatgtta aaaaatttca
      121 atatattaat ttaatgaaat atgttttagc ttcagatatg ttgaaaaata tagaactgtt
      181 gggtaatttt tataattttg atcaaattaa cttaataagt ttattgtcag atcggcaagc
      241 ggtgcaacag gcagagattg acctaaaacg tatgaatatt tgcagtaatt atatgttaga
      301 taaaaaaaaa tataatttac tttttttaat gcgttatagt ttggctgcta gattttttaa
      361 tagattggat tataggctag gaaaatgttt attagatgca aaagaaataa gaaaaataa
//
LOCUS       DAZAND010000189          385 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.192, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000189 DAZAND010000000
VERSION     DAZAND010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.192"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(6..81)
                     /locus_tag="ACHDOB_001815"
     tRNA            complement(6..81)
                     /locus_tag="ACHDOB_001815"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46..48),aa:Lys,seq:ttt)
     gene            complement(86..162)
                     /locus_tag="ACHDOB_001816"
     tRNA            complement(86..162)
                     /locus_tag="ACHDOB_001816"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(126..128),aa:Asp,seq:gtc)
     gene            complement(214..289)
                     /locus_tag="ACHDOB_001817"
     tRNA            complement(214..289)
                     /locus_tag="ACHDOB_001817"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(254..256),aa:Val,seq:tac)
     gene            complement(296..371)
                     /locus_tag="ACHDOB_001818"
     tRNA            complement(296..371)
                     /locus_tag="ACHDOB_001818"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(336..338),aa:Arg,seq:tct)
BASE COUNT          111 a           96 c           94 g           84 t
ORIGIN      
        1 aaaaatggtg tcccgtgttg gattcgaacc aacggccccc tccttaaaag ggagatgctc
       61 taccggctga gctaacgaga caagatggcg cagcggacgg ggctcgaacc cgtgacctcc
      121 gccgtgacag ggcggcattc taaccagctg aactaccgct gcatccaaag taaagaagta
      181 gagattataa aacctattta tgattttata aaatggtggt cactataaga ctcgaactta
      241 tgacatccac cttgtaaggg tggcgctcta ccaactgagc taagcgacct atgattggcg
      301 acccctagag gatttgaacc tctgtttcca cacagagaga gtgttgtcct gggccactag
      361 acgaaagggt cataacccta acaat
//
LOCUS       DAZAND010000190          375 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.194, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000190 DAZAND010000000
VERSION     DAZAND010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.194"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>375
                     /locus_tag="ACHDOB_001819"
     CDS             <1..>375
                     /locus_tag="ACHDOB_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HFN3326714.1"
                     /translation="IEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAY
                     YKVYQSIKHCRDFSKILSNDFNNIQNIYLNLNKKENDLNLAIRKIDEFKNKLENIKQM
                     QDLYEILQPLRTQFELNLARIYV"
BASE COUNT          167 a           35 c           44 g          129 t
ORIGIN      
        1 gatagaagga accatagaaa aacctttttt atgggcttgt gagaatttac ttgataaaga
       61 tttaaataaa ccttttgaaa aattagaacc tttaagttta aataaacaaa atgaattttt
      121 acttaaggct tattataaag tttatcaaag tattaaacat tgtagagatt ttagtaaaat
      181 actcagcaat gattttaaca atatacaaaa tatatattta aatttaaaca aaaaagaaaa
      241 tgatttaaac ttggctatta gaaaaataga tgaatttaaa aataaattag aaaatatcaa
      301 acaaatgcaa gatttatatg aaattttaca acctttgcgt actcaatttg aacttaatct
      361 tgctagaatt tatgt
//
LOCUS       DAZAND010000191          356 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.195, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000191 DAZAND010000000
VERSION     DAZAND010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.195"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            11..>356
                     /locus_tag="ACHDOB_001820"
     CDS             11..>356
                     /locus_tag="ACHDOB_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HFN3326715.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTDKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDT"
BASE COUNT          141 a           54 c           53 g          108 t
ORIGIN      
        1 aggatacaat atgaaaaaaa ttcttctctt aggtgctctt tttgctgtaa atctttgggc
       61 tgttaatgat atagaggtaa aaaatgcctt tgtaaaacaa actccacctc atgcacaaaa
      121 tagtgctatt tttcttacca tttttaataa tactgataag gatattgctc taataagtgc
      181 caaaagcgat atcagtgaag tcagtgaact gcatacacat atacataaag atggaaaaat
      241 gatgatgcaa aaaattcctg aaattattat aaaagctcat tcaagcacag agcttaaatc
      301 aggaggttat catataatgc ttttaaaact aaaaaaacct attattaaag acacga
//
LOCUS       DAZAND010000192          352 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.196, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000192 DAZAND010000000
VERSION     DAZAND010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.196"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..341
                     /locus_tag="ACHDOB_001821"
     CDS             <1..341
                     /locus_tag="ACHDOB_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HFN3326716.1"
                     /translation="IDGYSLAYNDFKKTKIIIEKAIKKLKKNGKFFSITPSFNNEGFI
                     KDEKLPYHTCKPTHGSDAFTGIIRYCDEKDIKQLYQGENYQIIDIKINTLKNLENNLS
                     ELYIIEGKKL"
BASE COUNT          161 a           42 c           46 g          103 t
ORIGIN      
        1 ggattgatgg gtattcactt gcttataatg attttaaaaa aacgaaaatc attatagaaa
       61 aagcaattaa aaaacttaaa aaaaatggta aatttttctc tattactcca agttttaata
      121 acgaaggttt tattaaagat gaaaaactac cctatcacac atgcaaacca actcatggaa
      181 gtgatgcttt tacgggaata atacgttatt gtgatgaaaa agacataaaa caactttatc
      241 aaggagagaa ttaccaaatt atagatataa aaataaatac attaaaaaat cttgaaaata
      301 atctcagtga actttatata attgaaggaa aaaaattatg aataacagca ct
//
LOCUS       DAZAND010000193          338 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.197, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000193 DAZAND010000000
VERSION     DAZAND010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.197"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>338
                     /locus_tag="ACHDOB_001822"
     CDS             <1..>338
                     /locus_tag="ACHDOB_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HFN3326717.1"
                     /translation="AQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFI
                     NQEFQIGASSNQTVKATIGATQSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQF
                     QKVVISTSVGT"
BASE COUNT          129 a           54 c           57 g           98 t
ORIGIN      
        1 gctcaagatg gacaaagttt aaaaacaaga accatgcttc aagcagatat caaccgttta
       61 atggaagaac ttgacaatat cgcaaatact acttcattta acggtaaaca acttttaagt
      121 gggaatttta tcaatcaaga atttcaaatc ggtgcaagtt caaatcaaac tgtaaaagct
      181 actataggag caactcaatc ttctaagata ggtttaacac gctttgaaac aggaggaaga
      241 atttcatcta gtggcgaagt acaatttact cttaaaaatt acaatggtat agatgatttt
      301 cagtttcaaa aagttgtgat ttcaacttca gttggaac
//
LOCUS       DAZAND010000194          317 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.200, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000194 DAZAND010000000
VERSION     DAZAND010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.200"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..262)
                     /locus_tag="ACHDOB_001823"
     CDS             complement(<1..262)
                     /locus_tag="ACHDOB_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326718.1"
                     /translation="MKKIFLSVFLALSLNAQNLEIDKIRTDLYSKSGANVLKKVEISL
                     EFDGNNLKENENKLIDAVNTVISGFFYEDIFTEIGKNNFKKTL"
BASE COUNT          112 a           49 c           21 g          135 t
ORIGIN      
        1 ctaaagtttt tttaaaatta ttttttccaa tttctgtaaa aatatcttcg taaaaaaacc
       61 ctgaaattac tgtatttaca gcatcaatca acttattttc attttctttt aaattattcc
      121 catcaaattc caaagaaatt tcaacttttt taagaacatt tgccccactt ttagaataca
      181 aatctgttct tattttatct atttcaagat tttgagcatt taaactcaaa gccaaaaaaa
      241 cacttaaaaa tatttttttc atttaatgcc tttaaatgat ttgttcttgt atttcaagat
      301 ctaaaaaatt atgtttt
//
LOCUS       DAZAND010000195          314 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.201, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000195 DAZAND010000000
VERSION     DAZAND010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.201"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>314
                     /locus_tag="ACHDOB_001824"
     CDS             <1..>314
                     /locus_tag="ACHDOB_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326719.1"
                     /translation="ENLQNLKNTMQDIMIYYKLRYSFSKDVKDMSKNKNLDILNIDEK
                     DGGTLLYKINNQACVGIELTRHDSRMAMKIYGIENLDKECKLFIQSPSFKDLSYTKKD
                     FK"
BASE COUNT          136 a           38 c           46 g           94 t
ORIGIN      
        1 atgaaaattt acaaaatttg aaaaatacca tgcaggatat tatgatatat tataaactcc
       61 gatattcttt tagtaaagat gtaaaagata tgagtaaaaa taagaatttg gatattttaa
      121 atatagatga aaaagacggt ggcactttac tttacaaaat caacaatcaa gcttgcgttg
      181 gaatagaact tacaagacat gactcaagaa tggctatgaa aatatacgga atagaaaatt
      241 tggataaaga gtgcaaacta tttatccaat caccttcttt taaagatctt tcctacacaa
      301 aaaaagattt taag
//
LOCUS       DAZAND010000196          299 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.202, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000196 DAZAND010000000
VERSION     DAZAND010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.202"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>299
                     /locus_tag="ACHDOB_001825"
     CDS             <1..>299
                     /locus_tag="ACHDOB_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HFN3326720.1"
                     /translation="YINEDIFENLDRIRYTDKNGHNANLKKPDLSSIYFIVNEELSFS
                     YFSNINLIKNKNILYVDTKSISKDNAFATIKTLAKELNFKEPNDNDEYKFKQKFW"
BASE COUNT          135 a           31 c           35 g           98 t
ORIGIN      
        1 ttatataaat gaagatatat ttgaaaattt agatagaata agatatacag ataaaaatgg
       61 acataatgct aatcttaaaa aacctgattt atcatctatc tattttatcg taaacgaaga
      121 gctaagtttt agctattttt caaatataaa cttgattaaa aacaaaaata tattatatgt
      181 agacacgaaa tcaatttcaa aagataatgc atttgccact ataaaaactc ttgctaaaga
      241 gcttaatttt aaagaaccaa atgataatga tgaatataaa tttaagcaga aattttgga
//
LOCUS       DAZAND010000197          293 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.203, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000197 DAZAND010000000
VERSION     DAZAND010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.203"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..263
                     /locus_tag="ACHDOB_001826"
     CDS             <1..263
                     /locus_tag="ACHDOB_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN3326721.1"
                     /translation="KTTIKIKNFPHYSNLKIKIYSLNSYIGDIIPKFNIVNGDILINF
                     IGRSITDDSRFRVEFLNNNAPTGFFFDFDVTMQKNFQTGNTH"
BASE COUNT          115 a           32 c           30 g          116 t
ORIGIN      
        1 ataaaactac tataaaaatt aaaaattttc ctcattattc taatttaaag attaaaattt
       61 atagtttaaa ttcctatata ggcgatatca ttcctaaatt taatatagtt aatggtgata
      121 ttcttataaa ttttataggt agaagcatta ccgatgattc tagatttagg gttgaatttt
      181 taaacaataa tgctccaact ggttttttct ttgattttga tgttactatg caaaaaaatt
      241 ttcaaacagg taacacacat tgaaaaattt tcaaaatttt atattcaaat aaa
//
LOCUS       DAZAND010000198          258 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.denovo.206, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000198 DAZAND010000000
VERSION     DAZAND010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 258)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 258)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..258
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.denovo.206"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>258
                     /locus_tag="ACHDOB_001827"
     CDS             <1..>258
                     /locus_tag="ACHDOB_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN3326722.1"
                     /translation="VIIVVVFSVILLYFIVSKYLSPLAAIQTGLTSFFDFINHKTKNV
                     STIEVKSNDEFGQISNAINENILATKRGLEQDNQAVKESVET"
BASE COUNT           95 a           47 c           34 g           82 t
ORIGIN      
        1 tgtcattatt gtagtagtat ttagcgtaat cctcctttat ttcatcgtat caaaatatct
       61 ctccccactt gcagctatcc aaacaggttt aacttcattc tttgatttta tcaaccataa
      121 aacaaaaaat gtttctacta tagaagtaaa aagcaatgat gaatttggac aaatctcaaa
      181 tgctatcaat gaaaacattc ttgctactaa aagaggttta gaacaagaca atcaagccgt
      241 taaagaatcg gttgaaac
//
LOCUS       DAZAND010000199         6057 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.guided.089, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000199 DAZAND010000000
VERSION     DAZAND010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6057)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6057)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6057
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.guided.089"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            69..1172
                     /gene="cmeA"
                     /locus_tag="ACHDOB_001828"
     CDS             69..1172
                     /gene="cmeA"
                     /locus_tag="ACHDOB_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HFN3326723.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMARATFENASKDFNRSKALFSKNAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTVGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETIQGKLYFIDSVIDANSGTVKAKAVFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQDQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            1172..4294
                     /gene="cmeB"
                     /locus_tag="ACHDOB_001829"
     CDS             1172..4294
                     /gene="cmeB"
                     /locus_tag="ACHDOB_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HFN3326724.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGVISLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNDDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALVLAIGIVVDDAIIVVENIDRILHENEQINVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLNKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAAANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            4287..5765
                     /gene="cmeC"
                     /locus_tag="ACHDOB_001830"
     CDS             4287..5765
                     /gene="cmeC"
                     /locus_tag="ACHDOB_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HFN3326725.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSSF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNT
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(5788..6039)
                     /gene="cmeU"
                     /locus_tag="ACHDOB_001831"
     CDS             complement(5788..6039)
                     /gene="cmeU"
                     /locus_tag="ACHDOB_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CmeU family protein"
                     /protein_id="HFN3326726.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINNTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
BASE COUNT         2116 a          925 c         1037 g         1979 t
ORIGIN      
        1 gatataatta gccaaaaatt tttgtaataa atattacaat ttttaattta atttttcaag
       61 gcaaaaccat gaaattattt caaaaaaata ctattttagc tttaggtgtt gtgcttttac
      121 tcactgcttg tagcaaagaa gaagcaccaa aaatacaaat gccgcctcaa cctgtaacaa
      181 ccatgagtgc taaatctgaa gatttaccac ttagttttac ttaccctgct aaacttgtca
      241 gcgattatga tgtcattata aaacctcaag ttagtggcgt aatagtaaat aaacttttta
      301 aagctgggga taaggtaaaa aaaggacaaa cattatttat tatagagcaa gataaattta
      361 aagctagtgt tgattcggct tacggacaag ctttaatggc tagagcaact tttgaaaatg
      421 caagcaagga ttttaatcgt tctaaagctc tttttagtaa aaatgcaatc tctcaaaagg
      481 aatacgactc ttctcttgct acatttaaca attcaaaagc tagtctagca agtgctagag
      541 cacaacttgc aaatgcaaga attgatctag atcataccga aataaaagct ccttttgatg
      601 gtactgtagg agatgcttta gttaatatag gagattatgt aagtgcctca acaactgaac
      661 tagttagagt tacaaattta aatcctattt acgcagattt ctttatttca gatacagata
      721 agctaaattt agtccgcaat actcaaagtg gaaaatggga cttagacagc attcatgcaa
      781 atttaaatct taatggagaa accattcaag gcaaacttta ttttattgat tcggttatag
      841 atgctaatag tggaacagta aaagccaaag ccgtatttga taacaacaac tcaacacttt
      901 taccaggtgc ttttgcaaca attacttcag aaggttttat acaaaaaaat ggctttaaag
      961 tgcctcaaat agctgttaaa caagatcaaa atgatgttta tgttcttctt gttaaaaatg
     1021 gaaaagtaga aaaatcttct gtacatataa gctaccaaaa caatgaatac gccattattg
     1081 acaaaggatt gcaaaatggc gataaaatca ttttagataa ctttaaaaaa attcaagttg
     1141 gtagtgaagt taaagaaatt ggagcacaat aatgttttct aaatttttta tcgaaagacc
     1201 tgtttttgct tcagttgttg caattatcat ttctttagct ggagtcataa gtcttacaaa
     1261 tttacctata gaacaatatc cttctttaac tcctcctaca gttaaagtaa gtgcaactta
     1321 cacaggagct gatgcacaaa ccattgcttc aacagttgca agtcctatcg aagatgcaat
     1381 caatggcgcg gataatatga tttacatgga ttcaacttca agttcttcag gaactatgag
     1441 tttgactgtc tattttgata tcggtacaga tcctgatcaa gccaccatag atgttaataa
     1501 tagaatttca gccgcaactg caaaaatgcc agatgcagtt aaaaaacttg gagtaacagt
     1561 tagaaaaact tcctcaacaa cacttgctgc aatttctatg tattcaagtg atggttcaat
     1621 gagtgcagta gatgtatata actatatcac tttaaatgtg ttagatgagt taaaaagggt
     1681 tccaggagtt ggagatgcaa atgctatagg aaatcgtaat tattctttaa gaatttggct
     1741 caagcctgat ttattaaata aatttggaat cacagctact gatgtaattt ctgcggttaa
     1801 tgaccaaaat gcccaatacg caactggtaa aattggcgaa gaacctgtaa ctcaaaaatc
     1861 cccttatgtt tattcaatca ctatgcaagg aagattgcaa aatcctagtg aatttgaaaa
     1921 cattatttta agaacaaatg atgatggatc atttttaaga cttaaagatg tagctgatgt
     1981 ggaaatagga tcacaacaat acagctcaca aggacgatta aatggcaatg atgcagttcc
     2041 gattatgatc aatcttcaat caggggcaaa cgcattgcat acagcagaac ttgttcaagc
     2101 taaaatgcaa gaactttcaa aaaatttccc aaaaggttta acatataaaa ttccttacga
     2161 tacaacaaaa tttgtaatag aatcaatcaa agaagttgtt aaaacttttg ttgaagcttt
     2221 aattttagtt attattgtta tgtatatgtt cttaaaaaat ttccgtgcaa cccttattcc
     2281 tatgatagct gtacctgttt cattgttagg aacttttgct ggactttatg ttttaggttt
     2341 tagtattaac ctacttacgc tttttgcttt ggttttagcc atagggatcg ttgtagatga
     2401 tgcgatcata gttgtagaaa atatcgatag gattttacat gaaaatgaac aaataaacgt
     2461 aaaagatgct gccattcaag cgatgcaaga agttagctct ccggttattt caattgttct
     2521 tgtgctttgt gctgtttttg taccagtttc ttttatatca ggttttgttg gagaaattca
     2581 aagacaattt gctcttacct tagctatatc tgtaactata tcaggttttg ttgctcttac
     2641 cttaacacct tctttatgcg cactcttttt gcgacgtaat gaaggagaac catttaaatt
     2701 tgtaaagaaa tttaatgatt tttttgattg gagcacctct gtatttagcg caggagtagc
     2761 atatattcta aaaagaacca ttcgttttgt tttaattttt tgtattatgc ttggagcgat
     2821 tttttatctt aataaagctg tgccaaattc tttagttccc gaagaagatc aaggtttgat
     2881 gattagtatt atcaaccttc cttcagcttc agcactccat agaacaattt cagaagttga
     2941 tcacataagc caagaagttt taaaaactaa tggagttaaa gatgcaatgg ctatgatagg
     3001 atttgatctt tttacaagtt cactcaaaga aaatgccgct gcaatgttta taggtttgca
     3061 agactggaaa gatagaaatg taagtgctga tcaaattata gccgaactta ataaaaaatt
     3121 tgcttttgat cgcaatgctt caagtgtatt tataggctta cctcctatac ctggattgag
     3181 tatcacaggc ggttttgaaa tgtatgttca aaacaaaagc ggaaaaagct atgatgaaat
     3241 acaaaaagat gtaaataaac ttgttgctgc ggccaaccaa agaaaagaac tatcaagagt
     3301 aagaacaaca cttgatacaa ctttccctca atacaagctt ataattgata gagataaatt
     3361 aaaacactac aatcttaaca tgcaagatgt ttttaacacg atgaatgcaa ctataggcac
     3421 ttattatgtt aatgattttt ctatgctagg taaaaacttc caagtaaata tccgcgcaaa
     3481 aggtgatttt agaaatacac aagatgcatt aaaaaatatt tttgtaagat caaatgatgg
     3541 aaaaatgata ccacttgatt ctttcttaac tttacaaaga agttcagggc ctgatgatgt
     3601 aaaacgattc aaccttttcc cagcggcaca agttcaaggt caacccgcac caggttatac
     3661 ttcaggtcaa gctatagaag cgattgctca agtagcaaaa gaaactttag gggatgatta
     3721 ttccatagct tggagtggat cagcttatca agaagtttct agtaaaggaa cagcaagcta
     3781 tgcttttgct ttaggtatga tatttgtctt tttaattcta gctgcccaat atgaaagatg
     3841 gcttatacct ttagcagttg taacagctgt accttttgcg gtatttggat catttttatt
     3901 ggtatattta aggggattta gcaatgacat atattttcaa acaggacttt tgctcttgat
     3961 tggactttca gctaaaaatg ctatcttaat agtagaattt gcaatggaag agcgctttaa
     4021 aaaaggcaaa ggagtttttg aagcagctgt tgcagcagca aaacttcgtt ttcgtcctat
     4081 cataatgact tctttggcat ttacttttgg ggtcttgcca atgattttcg caacaggagc
     4141 aggaagtgct tcaagacact ctttaggaac agggcttatt ggtggaatga tcgcagcatc
     4201 aactttagcg atattctttg tgcctttatt tttctatctt ttagaaaatt ttaatgaatg
     4261 gctagataaa aaaagaggta aggttcatga ataaaataat ttcaattagt gctatagcaa
     4321 gttttactct tttgatttca gcttgctctt taagtccaaa tttaaatatt cccgaagcaa
     4381 actatagcat tgataataag cttggagcct tatcttggga aaaagaaaac aatagctcta
     4441 tcacaaaaaa ttggtggaaa gactttgatg atgaaaattt aaataaagtg gttgatttag
     4501 cacttaaaaa taataatgat ttaaaacttg ccttcataca catggaacaa gctgctgctc
     4561 aattaggtat agattttagc agtttgttgc caaaatttga tggtagcgca agcggtagtc
     4621 gtgcaaaaac agctataaat gctccaagca atcgaaccgg ggaagtaagt tacggtaatg
     4681 attttaaaat ggggcttaat ttaagctatg aaatcgatct ttggggaaaa tatcgcgata
     4741 catatcgcgc ctcaaaatca agctttaaag caagtgagta tgattatgaa gctgcaagac
     4801 tttctgttat ttcaaataca gttcaaactt attttaatct tgtaaatgct tatgaaaatg
     4861 aaaatgctct taaagaagcc tatgaatctg caaaagaaat ttataggatc aatgatgaaa
     4921 aatttcaagt tggcgctgta ggtgaatatg aacttgctca agcaagagcc aacttagaaa
     4981 gtatggcttt acaatataat gaagcaaaat taaataaaga aaattacctt aaagctttaa
     5041 aaattttaac ttcaaatgat ttaaatgaca tactttacaa aaatcaaagc tatcaagttt
     5101 ttaatcttaa agaatttgac attccaactg gaatttcaag caccatcttg cttcaacgtc
     5161 cagatattgg ctcttcttta gaaaaattaa ctcagcaaaa ttatcttgtt ggagtagctc
     5221 gcacggcttt cttacctagc ctttctttaa caggattatt gggatttgaa agtggggatt
     5281 tagatacctt ggttaaagga ggttctaaga cttggaatat aggtggaaac tttactctgc
     5341 ctatttttca ttggggtgaa atttaccaaa atgtaaattt agctaaactt aataaagatg
     5401 aagcttttgt aaattatcaa aatactttga ttactgcttt tggagaaatt cgctatgctt
     5461 tagtagctag aaaaactata cgcttacaat acgataatgc acaagcaagc gaacaatctt
     5521 ataaaagaat ctatgaaatt gctaaagaac gctatgatat aggagaaatg tctttgcaag
     5581 attatttaga ggcacgtcaa aattggctta atgctgcggt tgcttttaat aatactaaat
     5641 attcttatgc caattccata gtagatgtaa tcaaagcatt tggtggagga tttgagcaaa
     5701 gtgaagatac gagtaaaaat ataaaagaag aatcaaaaaa tttagatatg tcttttagag
     5761 aatagtttgt tctattctct aaataaatca aaaatctttg tctaaatctg catctgtaat
     5821 ttcataagcc ttgtaaatag caggcaataa ttttcttata gcataatcaa aatgataaaa
     5881 ttgcttatat acctcttctg gatttaaatt tttagcattc ttaaaatcaa atacttcagt
     5941 attattgatt ttggcaatat tttcatcaaa ataagagtaa aactctgctc tttgtttaaa
     6001 caaagcattt aaattttgaa caattttggc tttatccatt ttatatcctt tttaaat
//
LOCUS       DAZAND010000200         3682 bp    DNA     linear   BCT 19-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867011-rid22678863.guided.123, whole genome shotgun
            sequence.
ACCESSION   DAZAND010000200 DAZAND010000000
VERSION     DAZAND010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867011
            Sequence Read Archive: ERR11203722
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 07-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002301243.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002301243.1
            Genome Coverage       :: 162x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/19/2024 01:51:03
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,836
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,762
            CDSs (with protein)               :: 1,762
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 26 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3682
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867011-rid22678863.guided.123"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            35..808
                     /locus_tag="ACHDOB_001832"
     CDS             35..808
                     /locus_tag="ACHDOB_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HFN3326727.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(893..1777)
                     /locus_tag="ACHDOB_001833"
     CDS             complement(893..1777)
                     /locus_tag="ACHDOB_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HFN3326728.1"
                     /translation="MIRIDINHPINTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNVKENIA
                     YATSSKAKVSELLALMGLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELAKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSSISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDIKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(1774..2448)
                     /gene="modB"
                     /locus_tag="ACHDOB_001834"
     CDS             complement(1774..2448)
                     /gene="modB"
                     /locus_tag="ACHDOB_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HFN3326729.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKGKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYNLAHQYAFILFIFSFLVLFSLYFVN
                     KKMSFQ"
     gene            complement(2441..2842)
                     /locus_tag="ACHDOB_001835"
     CDS             complement(2441..2842)
                     /locus_tag="ACHDOB_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HFN3326730.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSILMLELKYLENLKI
                     GASVELLFKEHELCFSTSKTLLSVENSFLAKITKIKKGELLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(2839..3588)
                     /gene="modA"
                     /locus_tag="ACHDOB_001836"
     CDS             complement(2839..3588)
                     /gene="modA"
                     /locus_tag="ACHDOB_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HFN3326731.1"
                     /translation="MKKFIVFFGILFFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGIENLKEKAGKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAIIIDTKYFSPLEQSYVITKY
                     AKDKKLAFEFSEFIGSSKAKEIFKKYGFSTP"
BASE COUNT         1375 a          561 c          488 g         1258 t
ORIGIN      
        1 tttgtttaaa attatttaaa tagaaagata ttttatgaaa aaaataactt tatttttact
       61 tttcttaaat ttagtgtttg ggcaagataa gatattaaat aattggttta aagagtataa
      121 tacaagcggc acttttgttt tttatgatgg aaaaacttgg gcgagtaacg acttttcaag
      181 ggctatggag actttctctc ccgcttccac ttttaaaatt tttaatgctc taattgcact
      241 tgatagtggt gtgataaaaa ctaaaaaaga aattttttat cactatagag gtgaaaaagt
      301 atttttatct tcttgggcgc aagatatgaa tttaagttca gctataaaat attctaatgt
      361 tcttgctttt aaagaagtgg caagaagaat tggtatcaaa actatgcaag aatatttaaa
      421 caagcttcat tatggtaatg ctaaaatttc caagatcgat actttttggc ttgacaactc
      481 actaaaaata agcgctaaag aacaagcaat tttgcttttt agactttcac aaaatagctt
      541 acctttttct caagaagcaa tgaatagtgt taaggaaatg atttatttaa aaaatatgga
      601 aaatttagag ctttttggaa aaacaggttt taatgatgag caaaaaattg cttggattgt
      661 aggttttgtg tatttaaaag atgaaaataa atataaggct ttcgcgctaa atttagatat
      721 tgataaattt gaagatttat ataaaagaga aaaaatttta gaaaaatatt tagatgaact
      781 tgtaaaaaaa gttaaaaatg atggctagtg agtatttcgt aaaatgcaaa aatacttaat
      841 tgtatgattt gcgtacactt aaagtactca ttaaaaaatt aaatttttgc tcttatttat
      901 caagttttcc tacgatgata gggttaaagg cttttatgga tagcaaaagc gtatcgccga
      961 tttttatatc ttgataagct tttagaaatt cctcttcact aagagtgatt ttaataatat
     1021 cttgatttaa aagcaaggtt aaaaccacta aaatatcact ttttttaatt tctagcaaag
     1081 ttgcactcaa acgcaatttt gcactaatac ttgaatgagt aaaaaattca tttttaggaa
     1141 aatccttaat gatttttcca tttttaagct ctaaaattct atgacttaac ttataaattt
     1201 cagccaaatc atgactgact aataaagtac ttatcttaaa atactctaaa attttagcca
     1261 attcatcttg taaattggcg cgcattttaa aatccaaagc gcttaaaggc tcatctaaaa
     1321 gcaaaatttt tggttccctt gctaaagctc ttgctagggc taccctttgt gcttgtcctc
     1381 cgcttaaatg tttaggataa attttagcca aattttcaag tcccattaag gctaaaagct
     1441 cgctaacctt tgccttagaa ctagtggcat aggcaatatt ttcttttaca ttcatatttg
     1501 gaaaaagcgc ataatcttga aaaacaaaac caatttttct tttttgtaaa gctaagctaa
     1561 aattttttga agaatcaaac caaagttcat tatctacttc tatacgcccc aatttaggct
     1621 ttataagtcc tgctatgatt tttaaaagag tggtttttcc tgctccactt tcgccaaaaa
     1681 gtgcagtaat ttttcctgat tctatatctt ttttaaaatt taaatccagt cttcctttag
     1741 cagtatttat aggatgattg atatcaattc ttatcattga aaactcattt ttttattgac
     1801 aaaataaaga ctaaaaagca ctaaaaaaga aaaaataaac aatataaaag catattgatg
     1861 ggctaagtta tagtttaaga tttcaagttc atcgtaaata gctatactag ctactaaagt
     1921 ttcaccttgt ttatgtcctc ctatcatcat cacgactcca aattcaccca cagtatgagc
     1981 aaaactcatc gcacaagcac taaaaattcc tgctttagaa ttaggtaaaa tcactctaaa
     2041 aagagtataa attttacctt tacctaaact ataagaagca tcgagcaaat ttggattgat
     2101 cgatgaaaag gcactttgca aaggatttac cataaaaggc aaagaaaaaa tcaaagaagc
     2161 aaaaacaaga ccttcaaaac taaaaaccaa agaaagatta aaatattctt ttaaaacttg
     2221 ccctaaaaaa ctattagccg aaaaagttac aagcaaataa aatcccaaaa cgctaggagg
     2281 taaaatcaaa ggcaaagaaa taaagctttg aaggattgtt ttaaaaggaa aacgcacaaa
     2341 acttaacaaa taagctaaaa atacaccaat aaaaaaaaga ataaaagtcg tgataaaagc
     2401 aagtttaaaa gtaagataaa gagtttgtaa aaaagctgga tcaagcacta tgactcctta
     2461 atacaatatc atttgctttt acaaaacaaa gccattcttg attttcacaa atttcaagtt
     2521 ctaaagcttt ttctttggtg ataatactag aaagttcgtt acctttaaaa tcaaaaaata
     2581 cctgatacaa aagttcgcct tttttaattt ttgtaatttt agctaaaaaa gaattttcaa
     2641 cacttaaaag agttttactt gtactaaagc aaagctcatg ctctttaaaa agaagttcta
     2701 cactcgcacc aatttttaaa ttttctaagt attttaattc aagcattaaa atactaaaaa
     2761 tcacttcttt ggaaagtatt ttaacaataa ctatatcctc ttgatttaaa agctcgcaaa
     2821 tttgtccttt tataaggttc atggtgtgct aaatccgtat tttttaaaaa tttcttttgc
     2881 ttttgaagag ccaataaatt cgctaaattc aaaggctaat tttttatcct tagcgtattt
     2941 tgtgataaca taactttgct ctaaagggct aaaatacttt gtatcaatta taatagcctt
     3001 acccttagga tgattgatag aagaaactaa agaataagcc actatagcta tatctgaatt
     3061 tttgctatct acatgtaaaa caggcactga gatattttcg cctaaaacga ttttatcctt
     3121 aagaagctca tttaaaccca aattttcaag cacttcttta gctgctactc cataaggagc
     3181 tactttagga ttggctatgc ttagatgcgt gattttacct gccttttctt ttaaattttc
     3241 aatgcctcct tggagtaaat tttcatccaa actatacaaa gccaaaactc ctaaaacata
     3301 aacttttggc tttattaaag catttttatc atcataaata gccttagcat atttagtatc
     3361 cgctgaaaaa aagagatcaa attctcttcc ttgttttaaa agctcataat attttccaga
     3421 agcaccaaaa accaattcta ttttatcttc tggatgtgtt ttcaaaaact catctttaac
     3481 ttcactcatc gcctttgaag ctgaagaagc tacaaaaatg cttaaatttt gtgcatttaa
     3541 acacgaaaca aaaaacaaaa tcccaaaaaa tactataaac tttttcattt agttttcctt
     3601 gtgtaaaaat ttaatttttg gattataaca caaaaaattc attttatatc atttttgcat
     3661 aaaataaata caggatgata ag
//
